LOCUS       DASQSJ010000001         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_517402, whole genome shotgun sequence.
ACCESSION   DASQSJ010000001 DASQSJ010000000
VERSION     DASQSJ010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517402"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            547..909
                     /locus_tag="VE223_00005"
     CDS             547..909
                     /locus_tag="VE223_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20004.1"
                     /translation="MYTVKKEFIVSKIETPQEGGPYLYLILTDPNRNFTSSRRQQGFP
                     EKPFGVAAIPITSLEDLKNLPKKISDAIEGAFGSGRNNTSESTIFKMNTSEYEELGIK
                     EGDKITVEMKISNKDMET"
     gene            1164..1499
                     /locus_tag="VE223_00010"
     CDS             1164..1499
                     /locus_tag="VE223_00010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20005.1"
                     /translation="MSHTPDDRNYTDSNESGASSTLERAGDLTGEPPSNEATNTKTAS
                     KMANLLEGLQFPATKEDIRNHINRKSPAMGNRINDVFEAVQNNLEDGVRYNSAYDVEM
                     AAGLVQKKD"
     gene            1741..>2044
                     /locus_tag="VE223_00015"
     CDS             1741..>2044
                     /locus_tag="VE223_00015"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HZC20006.1"
                     /translation="MADNEKRSSAAATPRRRRTTKKEKDLLQHKSNQDNLASAIMTLE
                     NINQNHFREINKIIKSRINELLDILNSDDQKFSLSVRAANAISMLDRMTQDKAMKSH"
BASE COUNT          755 a          361 c          364 g          564 t
ORIGIN      
        1 tatttgattt attggatgac aagcaaaagt atacatttag acccctgaaa ataagccccg
       61 agatttggga ttacttcagt aacaacacag gtggcatcta ccgcctgtat ggaagtttaa
      121 ataaaattga agataaacaa tagataatat agtgaattta gcaagacgta caatagataa
      181 tataatgaga tcgagattag gtttagcgta caataacacc tatattttgc gacgctatag
      241 caacaacata atttttaaaa ctcttctctt gtattgtctt cactcctaac caacatacca
      301 tatctgatat catttaaaag tcgtctttta ctgaaattat attcgttctc atcatttggc
      361 taggaaagga gtgcgaggca cctgtgctat ttgctcgatc ctatgattac agaacatatg
      421 caaccatcag tttactaaat ttttatcatc gccaaagtaa agacctacgg gttctcaagg
      481 gcattaactc taggatggga aaaagtcgca tctgaataat taggtctata tttgtgtaag
      541 taaacaatgt atactgtgaa gaaggagttt attgtttcaa aaatcgagac gccccaagag
      601 ggtggtccat atctatatct catattgact gaccctaacc gaaactttac ctcttctaga
      661 agacaacagg gattcccaga aaaacccttt ggagtggcag ccatacctat tacctcgtta
      721 gaggatttga agaatttgcc aaagaagata tccgatgcta ttgaaggagc atttggtagt
      781 ggtcgaaaca atacttcaga atctaccata tttaagatga acacttctga atacgaagaa
      841 cttggtataa aggaagggga taagattact gtagagatga aaatatcaaa taaagacatg
      901 gaaacataac taatgattga tgatttattg atcacgccaa gccatctcaa tagctttaat
      961 acgcagcaga gccaatattc cttggcttcc aaattttgtt tacaagaact ttgaatatct
     1021 tgaactaatg aagtgcttgt atgagaacaa atccacgtat agtatatggg atctttacat
     1081 ttctacgaga gatctagaat cttagactgt aatctttatc acaaattcga accattatag
     1141 atcacaatag gtgaaaataa aacatgtccc atacaccaga cgatagaaac tatactgaca
     1201 gtaatgaatc aggagctagt tcaacattag aaagagcagg agaccttaca ggggagccac
     1261 ctagtaatga ggcaactaac acaaagacag catcaaaaat ggcaaaccta cttgaaggtt
     1321 tacaattccc agcaaccaaa gaagatataa gaaatcacat aaatagaaag tctcctgcaa
     1381 tgggaaatag aattaacgat gtgttcgaag ctgtccaaaa caaccttgaa gacggagtta
     1441 gatataacag cgcttatgat gtagaaatgg ctgctggatt ggtgcaaaaa aaggattgat
     1501 ctcactatca tgtcgtctac aaggtgtttt agtatctaat tcgtttgcct caacgacaat
     1561 aacaatctta tagaagatac tacgtctttt acttttttta tgctatcttt ctacatcgcc
     1621 tagcttaatt gacacacgca aaaaacctgt ttggctttca atgctcctct cttgtatatg
     1681 taatattgat agatccacat aattgatata ttcaataact ataaagtaat aaaagtcaca
     1741 atggcagaca acgaaaaaag atcatctgct gctgcaacac caagaagaag gagaacaaca
     1801 aagaaagaaa aggacttgtt acaacataag agtaaccaag ataatttagc atctgcaata
     1861 atgacacttg aaaatattaa ccagaaccac tttcgtgaaa ttaacaagat tataaaaagc
     1921 aggataaatg aattactcga tatattaaac agtgatgatc aaaagtttag cctatctgtg
     1981 agggcagcaa atgccattag catgttagat agaatgacac aagacaaggc aatgaagtcg
     2041 caca
//
LOCUS       DASQSJ010000002         2567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_79912, whole genome shotgun sequence.
ACCESSION   DASQSJ010000002 DASQSJ010000000
VERSION     DASQSJ010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79912"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..741
                     /gene="trpS"
                     /locus_tag="VE223_00020"
     CDS             <1..741
                     /gene="trpS"
                     /locus_tag="VE223_00020"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HZC20007.1"
                     /translation="YTYENILDIIATGFDSKKTKIVVDTKHIQYLYPLASEIAKRITF
                     STAKSVFGFSNSTNVGMIGFPPIQAAPCFLPSVIEGKPTPVLIPAAIDQDPYWRMTRD
                     VAERMGYYKPSQIHSKFLPGLGMSGKMSSSKPETALFTSDEPEEIEKKVSAAFTGGQA
                     TVGMQRLLGGNPIGCPVFWYLRYFFDTERESDERLLKCKSGNLLCGECKSDLAKGSKS
                     FITNFKKRREKAKDVIANFMYDGQSYGK"
     gene            748..1038
                     /locus_tag="VE223_00025"
     CDS             748..1038
                     /locus_tag="VE223_00025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20008.1"
                     /translation="METTEKFECDDTYEAEKLSSLTAVQEDNSTYIHNIADVIENEII
                     IILKDKSCHSILMKDSSNAMKLKELLLQIVQGKKTISESSFDHYVTKITITQ"
     gene            complement(1236..1574)
                     /locus_tag="VE223_00030"
     CDS             complement(1236..1574)
                     /locus_tag="VE223_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20009.1"
                     /translation="MHRHDLIDLASYKIGINIKQLKEGLDPEIIGYWYKRVEDRAIEI
                     VPSHLRNKIHFEQDRLLWMKFKMDVSRRAVPYIMQVIEDYIPLMPYSTGLYFRKIQQI
                     LMEEIDKELR"
     gene            complement(1795..2277)
                     /locus_tag="VE223_00035"
     CDS             complement(1795..2277)
                     /locus_tag="VE223_00035"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HZC20010.1"
                     /translation="MLNKFDVVATGGTFDEIHDGHLALICKAFEIGNKVIIGVTSDEF
                     AAKTKGMNRIHHTYQERVANLKEVIEKKVGKVIYEISKLDSDYGPAVTSGEIGALVAS
                     VETAKKGEDLNIIRSRNGLPMLRIIAVEMRRADDGRPISSSRIRAGEIDASGRILKSK
                     "
     gene            complement(2365..>2567)
                     /locus_tag="VE223_00040"
     CDS             complement(2365..>2567)
                     /locus_tag="VE223_00040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20011.1"
                     /translation="PATVCKDIPKRSMIIDLNFYALYYMTIIELINRNLTMTRKYLLI
                     DIPRVCKDIPKRSVYFIFPPSL"
BASE COUNT          824 a          470 c          444 g          829 t
ORIGIN      
        1 tatacttatg aaaatatatt agatataatt gcaacggggt ttgactcaaa gaaaacaaaa
       61 attgtggttg atactaagca catccaatac ctttaccctc tcgcatcaga aattgcaaag
      121 agaattacat tttcaactgc aaaatcagtt tttggttttt caaactcaac caatgttggt
      181 atgataggat ttccacccat acaggctgca ccatgtttct tgccttcagt aattgaaggc
      241 aaaccaactc ctgttttaat tccagcagcg atagatcaag atccttattg gagaatgaca
      301 agagatgtcg ccgaacgtat gggctattac aaaccctccc aaatccacag caaatttctt
      361 ccaggtcttg gcatgtcagg caaaatgtcc tcctcgaaac ctgaaaccgc attatttacc
      421 tcagatgagc ccgaggaaat tgagaaaaaa gtgtctgcag cctttacagg aggccaggca
      481 acagttggta tgcaaagact attaggggga aatcctatcg gatgtcctgt tttctggtat
      541 ctacgatatt tttttgatac ggaaagagag tccgatgaac gtttgctaaa atgcaagagc
      601 ggcaatttat tatgcggaga atgtaaaagt gatttggcaa aaggatctaa gtcctttata
      661 acaaatttta agaagcggag ggaaaaagca aaagatgtta ttgctaactt catgtatgat
      721 ggacaaagct acggaaagtg atctgttatg gagacgacag aaaaatttga atgtgatgat
      781 acatatgaag cagagaaact atcatccttg acagcagtac aagaagacaa ttcgacatat
      841 attcataata tagccgatgt tatagaaaat gaaataatta ttattctcaa ggataaatca
      901 tgtcatagca ttcttatgaa agatagcagt aacgctatga agctaaagga attgctatta
      961 caaatagttc aaggaaagaa aactatttct gagagtagct ttgatcatta cgtaacaaaa
     1021 attaccatca cacaatgaac aacgttcttg gtttgtaatt gtttcactat aaaataacaa
     1081 gaccatatca aaaagacttt aactggcctt ggttggtcct gcagtactat tactaattgg
     1141 taactatgac gttaagataa aatttccttc tataagacat gacttggcgg caactagaca
     1201 ggattgcgtc tctgtgaggc cctgggcaaa cctattcaac gcaactcctt atctatctct
     1261 tccattagta tctgttgaat ttttctaaaa tatagaccag ttgaatatgg catgaggggt
     1321 atataatctt ctattacctg cattatatat ggtacagctc ttcttgatac atccatttta
     1381 aatttcatcc ataataacct atcttgttcg aagtgtatct tatttctaag gtgagaaggg
     1441 acaatttcta ttgctcgatc ttctactctc ttgtaccaat aaccaataat ttctggatca
     1501 agtccttctt ttaactgttt tatatttatc ccaattttat aagaagctag atctataaga
     1561 tcatgtctat gcatgtaaat tagcatcgat aatcagaata aaagtcaggg aatacacatg
     1621 gtttaagtaa atagttcaac ttttaaacgc agctactatt gctatgtttt ttgtgtttca
     1681 attaggcaaa taatattgtt gttaatgttg ctattcctct tgtagcccta attgatacaa
     1741 gaaggttgtt tcattctgat gaaacgtcag taatcaaata ataatgaata atttttactt
     1801 ggattttaaa attctgcctg aagcatcgat ttcgcctgcc cgtatacgtg aagaggagat
     1861 cggacgtcca tcgtccgctc ttctcatctc aacagcaata atcctcaaca tgggcaagcc
     1921 attcctcgat cggattatat taagatcctc tccttttttg gccgtttcaa cgcttgctac
     1981 aagtgcgccg atctcaccag aagtcacagc tggtccatag tcgctatcta atttgctaat
     2041 ttcataaatg accttgccaa ctttcttttc aattacttct tttaaattgg ctaccctttc
     2101 ttgataagta tggtggatcc tattcatccc ttttgtttta gctgcaaatt cgtcactcgt
     2161 gactccaata attactttgt ttccaatctc aaatgccttg cagatcaaag ctaaatgtcc
     2221 atcatgtatt tcatcgaatg ttccaccggt tgcgactaca tcaaacttgt ttagcattga
     2281 tagtttctct aaggtaaatt tgtggatata aataaagaat tcaatataga ggttttacaa
     2341 gatgctttcg gtttgtatca gtatctataa cgaaggtgga aaaataaaat acactgacct
     2401 ttttggaata tctttacata ctcttggaat gtcaattaac aaatatttac gtgtcatagt
     2461 tagatttcgg ttaatcaact ctattattgt catgtaataa agagcataaa aattaagatc
     2521 aatgatcatt gacctttttg gaatatcttt acacactgtg gcgggca
//
LOCUS       DASQSJ010000003         2126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_358333, whole genome shotgun sequence.
ACCESSION   DASQSJ010000003 DASQSJ010000000
VERSION     DASQSJ010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_358333"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            427..774
                     /locus_tag="VE223_00045"
     CDS             427..774
                     /locus_tag="VE223_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20012.1"
                     /translation="MMYKKQQTNYVLLFGIVVSAILVASLHINNSLLAQKALAQGATM
                     PNATSKPGSTTTGGKTANQSGAVTTKQSDINAVLNAVRNTNATSMATKNIINATTAGN
                     TTSAAGNTTNKTG"
     gene            1220..2026
                     /locus_tag="VE223_00050"
     CDS             1220..2026
                     /locus_tag="VE223_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     alpha"
                     /protein_id="HZC20013.1"
                     /translation="MVTAEIRKLPEEGDIVIATIKEVMGHGAYVRLDEYNGMTGFLHI
                     SEIATGWIRNIERYVRPKQKAVLKVIRVDKTRAEVDLSLKQVSGEERKSKLIEIKKNE
                     KASAFLEIIKSKAKINDIQLNEIEDKILQKYDYVYDVFETVAKKGVDAIQNLGLSPEV
                     VKAIEEESNKIQIPHVEIRGVIEISLKRSDGIDVIKNMLTTVESSKSSANVDVTYIGA
                     PKYRIVIVAENFKVAEKAMNNVVEKVHSSIDKYHGTFNFIREESKKTHQG"
BASE COUNT          752 a          338 c          415 g          621 t
ORIGIN      
        1 tttcaacttt cagataagga ttttatgctt tgataattta tacaaactgc ataggtatac
       61 agcatataat aatgatagta tttaaaaaat tttatgtgtt agtggctctg tcgaaaccat
      121 ttattcttga taagacaaaa ggtgtaatat ggccatacca cacatgtgat gaaagaatca
      181 acgtatgtct gttatgcatc atgaagaatg ctaggatgca gctattcctt cataggaaga
      241 gcaatcacat tttcatagtc tggcagcatt ttgttctggt atgagggtaa aggttaccgc
      301 atgtttacag aatggttggt aaatagaatc tgtatatata atacaatagt tcttgacata
      361 caaaactgaa tggagtgtta taatagaaat cagaaaaatt aataaatttc atacgagttc
      421 ttttttatga tgtataaaaa acaacagaca aattatgtat tgctgtttgg gattgtcgtt
      481 tcagccatac tggtcgcatc attacatatc aacaatagtc tactcgcgca gaaagcgcta
      541 gctcaaggcg ccactatgcc gaatgcaaca agtaaacctg gcagtacgac gactggtggc
      601 aaaacagcaa accaatctgg tgccgtaaca accaaacaaa gcgatataaa tgcagtactc
      661 aacgcagtcc gtaataccaa tgcaacaagt atggcaacca agaatattat caatgcaaca
      721 acagcaggta acacgaccag tgcagcaggt aacacgacca ataaaactgg ttagattgtt
      781 atcactaata atatgatgat aatatataac gtcaaggtca actacggata gtaataactg
      841 gctattgaag tctcatcgtt tatatggtat ctaaggtacc ttccagcatt ttttgacgtc
      901 ttttttaatt tcaattcatc tctgggatat actcaagttg tgtattcgag ttcttggagg
      961 tttctcttcg attcttttca agggcttacc cgagaacaac tatgtcctgc tcgtacgata
     1021 atcggtatag ctatacattt aacttttgtc catacttgag tcatcaaaat ctttattgga
     1081 agaatgttta ggtatttaaa tcagattagt gcaagaatat tatataaagc ggttatataa
     1141 tatccattct atccaagtag gacctgcatt tctacagggc aaccttaaag tatgccattt
     1201 gtacggttta cctttacgaa tggttactgc cgagattaga aaacttcctg aggaaggtga
     1261 cattgttatt gcaactatca aggaagttat gggtcacgga gcgtatgtta gattagatga
     1321 atataatgga atgaccgggt ttcttcatat ttctgaaatt gcgacaggat ggatacgtaa
     1381 tattgaacgt tatgtaagac caaaacagaa ggcagtttta aaagtaatca gagtcgacaa
     1441 gacaagagct gaagttgatc tttcactaaa gcaagtatcg ggagaagaaa gaaaatccaa
     1501 gctcatagag attaaaaaga atgaaaaggc gtctgccttc ttggaaatca taaagtcaaa
     1561 agctaaaatt aatgatattc agttaaatga gatagaagat aaaattcttc aaaagtatga
     1621 ttacgtttat gacgtttttg aaactgttgc aaaaaaggga gtcgatgcta ttcaaaatct
     1681 tgggttatcg cctgaagtcg taaaagctat tgaagaagaa agcaacaaga tacagattcc
     1741 acacgttgag atcagaggtg tgatagagat ttctctgaaa agatctgatg gcatagatgt
     1801 aattaagaat atgcttacaa cagtagaatc aagcaaaagt agtgcaaacg ttgatgtcac
     1861 ctatattgga gctccgaaat ataggattgt tatagtggca gaaaatttca aggtagcaga
     1921 gaaagcaatg aataatgtgg tagaaaaagt tcattcttct attgacaaat accatggcac
     1981 ttttaatttt attcgcgaag aatccaagaa aacacatcaa gggtaagtaa atgaaacgct
     2041 ttattcgaaa atgtccatta tgtggaacat atacgttaaa atatcaatgc ccaaaatgta
     2101 agcttcggca tcatgacgtc gagcaa
//
LOCUS       DASQSJ010000004         6124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_398501, whole genome shotgun sequence.
ACCESSION   DASQSJ010000004 DASQSJ010000000
VERSION     DASQSJ010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398501"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(287..463)
                     /locus_tag="VE223_00055"
     CDS             complement(287..463)
                     /locus_tag="VE223_00055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20014.1"
                     /translation="MEPTLRQILAVYISRHRNNMIVAEAFLSLLIKIYGGKHTTVYSD
                     GGSGIQKHVYYQDY"
     gene            1168..1431
                     /locus_tag="VE223_00060"
     CDS             1168..1431
                     /locus_tag="VE223_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZC20015.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENNLLEYLEGSQTYKTTEKGLNFLKMHNEIGELLQTSPKQER"
     gene            complement(1504..2307)
                     /locus_tag="VE223_00065"
     CDS             complement(1504..2307)
                     /locus_tag="VE223_00065"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HZC20016.1"
                     /translation="MSELKLEFVGKQVKDMYGTFVGKVVGMITDSDGSIESVGVDCGS
                     LGLKQLTYEQLLVQGDYVIYIPRWRLDAQKLLRQKNLTLKRIKALQDIVSENDLMKGD
                     AELVHIKYEKRLHEIEEDEKSINEKLQARLNELEAESKSIKAVLFDAKLQYRSNEVTE
                     EIYQQISIYTNELLEHINLERAEINNIKAKLSKQTLENISSTPSNIAITTQGLTAAES
                     TSQDETAKQNVMTPQIVASNTPAEEKVVVTRDNNSETETNWLNQVISSE"
     gene            2530..4182
                     /locus_tag="VE223_00070"
     CDS             2530..4182
                     /locus_tag="VE223_00070"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HZC20017.1"
                     /translation="MMHNGHASFYDYFSDEEGSILNSHFSNANRPVFAIITPKQVDRG
                     ALMARYSRTDKTMRRIFLDEFAKNPNRGEEFYKRILLEYGDDSVAELGEAQVAIEWVS
                     NIASKEIEDHRIGLSYLEKSSRYVAFDQKVNGQYKYCREERIMSSSHADRYLQACDHA
                     FDVYSKNIQPMQRFISEVDPIDRFFFFDSLSKKDIPYNNLKSEKDIESARRVYNATIR
                     AKSLDVLRGLLPASTLTNLAITGNGRAFEYLLSTMYASKLNEVKNLAEQLHTELNQVI
                     AAFVRRANDKYGRSLQSYLANTRSAISELVQHHIKNIELDEENTRSVKLINFEDNIDA
                     EIKIVSAILYEHAKGQSLEKIIKYTKSITPEDRHKIIQTYTKFRTNRRHRPGRAFEMV
                     EYTFEMLTNFGMFRDMHRHRILTLERQLLSTRHGYDIPAEVIDLDIVKDYKDCMYKSN
                     EAYEIISKNLPEEAQYVVNFAYKYPYFIKVNLREACHLIELRTTPQGHQDYRDICQKM
                     FGQIKLVHPLLAEEMKFVDLNKYELERFNAEKNVEKKRSELH"
     gene            complement(4183..5271)
                     /gene="fen"
                     /locus_tag="VE223_00075"
     CDS             complement(4183..5271)
                     /gene="fen"
                     /locus_tag="VE223_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HZC20018.1"
                     /translation="MGICKEEFEEKVKSLYYLIYVMGLDLKLLVEPYPITISELSNKI
                     VAVDAYNAIYQFLATIRGPTGELLTSTDGDVTSHLSGLFYRNINLLADNIKLIYVFDG
                     KPNPLKLKEIERRRQIKQEASERYHEAITEGRVEDARKYSQATSILTDKMVEESKKLL
                     TLLGIPFVLSPSEGEAAAAYMTKQGTAFTCASQDYDSILFGARKLTRNLTISGKRKVP
                     NKKAYMAVEPEIIEYERVLNQTKLTHEQLVDVGILIGTDFNPEGFAGIGPKTALKLIR
                     EYGKLENIEKIKHLLSDIPYQEIRNIYLKPETPKVYNIQFNEVNYNSIVNFLCTEKNF
                     SAERVNAAIEKLRRSISHRNQSLENWFS"
     gene            complement(5235..5420)
                     /locus_tag="VE223_00080"
     CDS             complement(5235..5420)
                     /locus_tag="VE223_00080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20019.1"
                     /translation="MPKARISITIDSKTAHDIENYYRTKVKAAAENEGSIPKLSNVYE
                     EIVTLGWESVKKNLKKK"
     gene            complement(5569..5686)
                     /locus_tag="VE223_00085"
     tRNA            complement(join(5569..5614,5633..5686))
                     /locus_tag="VE223_00085"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5634..5636),aa:Ser,seq:cga)
     gene            5883..>6124
                     /locus_tag="VE223_00090"
     CDS             5883..>6124
                     /locus_tag="VE223_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20020.1"
                     /translation="MSLKPPTIEEIKKLSVTDIVTMGALAGSLRDQLEKYIEIDPYTM
                     PDPFSDKDDCNYSVIVDREGPHRIVAMIAIKKDPLP"
BASE COUNT         1958 a         1086 c         1066 g         2014 t
ORIGIN      
        1 aaaagaaaga attttgtatt atttaattcc agctgttgcc ggttcggcac tagtaactaa
       61 agtcccttca ccccctaaat aataaaatta gtattggatt gatgatatcg ttatgcataa
      121 acaaaaaaag aattagtcat ttgtggacat gccgtagatt gcagtccatt tcttcttctt
      181 atacatgaga aatagccgtc aaatgcttca gttctatcct cctttagata ttcaattgct
      241 ctttcgacaa ctatactctt ttcatatgat gaatgtagtc tatgttttaa taatcctgat
      301 aatacacatg cttctggata ccacttccac catcgctata aacagtagta tgtttaccac
      361 cataaatttt gattaataaa ctcagaaatg cctctgcaac tatcatatta ttcctatgtc
      421 ttgaaatata aacagcaagg atttgtctaa gggttggttc cacaataacc catcagcaat
      481 gcttcattac tagaaccaat ctgtattata gtctcatcta ttagaaatgc tgataccctc
      541 ttttacaacg gtaaaagatg tctaggaagg attgaacctc tgaactcatt tccatactac
      601 gacatgactc cttcttcctt cgtctccaaa tggctgaata gcctcagagg tacttatgga
      661 acttagtact ggaaaatata agtataatat gcatatagtt tacttctacg atgttctctc
      721 atgttcaagt acgatcatcg aaatgagaga atgttcgcgg ctatatcttt atccttagat
      781 taacagaacc agcggctctt aacttttcgt cggatttccc taaccaaata ggtgttaatt
      841 ttcgtcagat aggtgttaaa gcctaatgca ggaagtttca ctgagctaga tgagtctatg
      901 actttaaagg tcagaaaaag gccaaagcga accacactct ttgacgtaaa taggagttac
      961 tagagatcga ccactctgag ttctaaacgt ggtatctttg acttacgcca tttaatactt
     1021 aagattaagg cagcgagtta ggtcataacc caaacaacat gaagaggcta gatccattga
     1081 ttttagttat ctgtatacac catacataat atggttatag taaaatgtat caatatatta
     1141 aataaacaaa tccagtgtac ttaaaatgtg aaatacagaa gtagaacaga aatagtagca
     1201 atgatcttag aagcagcaaa tggtggagca accaaaacta aaattatgta taaagcattt
     1261 cttagctatg cacagttaag ggaatatctt tctgtgctta ttgaaaacaa cttattggag
     1321 tatctagagg gctctcagac atacaagact actgagaagg gattaaactt tctaaagatg
     1381 cacaatgaga taggcgagct tttacaaacc tctccaaagc aagaaaggta ataagctgat
     1441 tctttttccc atattttcta aaaatagaaa acagtaaaac tccaagaaac agtttaggag
     1501 tttttattcg cttgaaatta cttggttcaa ccagtttgtt tctgtttctg aattattatc
     1561 acgtgtcaca acaactttct cctccgcagg agtatttgaa gctacaattt ggggcgtcat
     1621 tacattttgt ttagcagtct cgtcttgtga ggtagattca gcagcggtta aaccttgagt
     1681 tgttatagca atatttgacg gtgtggaaga aatattttcc aaggtctgtt ttgagagctt
     1741 tgccttaatg ttattgattt cagccctttc taggttaata tgctctagta attcatttgt
     1801 ataaatgcta atttgttgat agatttcctc tgtaacctcg ttactcctat attgcagttt
     1861 tgcgtcaaat aatactgctt tgatgctttt gctttctgct tctaattcat tcaatctcgc
     1921 ttgcaatttc tcattaatag atttttcatc ctcctcaatt tcatgcaacc ttttttcata
     1981 ttttatatga acgagttcag catcgccttt cattagatca ttttcactaa ctatgtcttg
     2041 aagagccttt attctcttta atgtaaggtt tttctgtctc agtaatttct gagcatctaa
     2101 tctccacctt ggaatataga ttacataatc tccctgaact agcaattgtt catatgttaa
     2161 ttgttttaag ccaagagaac cacaatctac accgacagat tcaattgaac catcgctgtc
     2221 tgtaatcata cccaccactt ttcccacaaa agtgccatac atatctttga cttgcttacc
     2281 tacaaattcg agcttcagtt cactcatgcg aaatgattga taagtagata taatgatatc
     2341 attgtcaaat ttgttggatt atttagctca tatagataat agatccaacg tgggtccttc
     2401 ctgtagcatg acaatcctat cggagagatc aggtagaatc caacgttttg gttaacattt
     2461 acaactgtta ataagcatat tcagatatgc tacgttttta tccatgatag ttatgaatat
     2521 tgcatattta tgatgcacaa tggtcatgca agtttttatg attatttctc agatgaagaa
     2581 ggatcgattc ttaattcaca cttttctaat gcaaataggc ctgttttcgc aataatcaca
     2641 cccaagcaag tggatagggg ggcattaatg gctagatatt ctagaacaga taagacaatg
     2701 aggcgcatat tcttagacga attcgcaaag aatccaaaca ggggagaaga attctataaa
     2761 cgtatattat tagagtatgg agacgattct gttgcagagc tgggagaagc gcaggttgca
     2821 atagaatggg tttcaaatat tgcttctaaa gaaattgaag atcatagaat aggattgtca
     2881 tatcttgaaa aatcctcacg atatgttgcc ttcgatcaaa aagttaatgg acagtacaaa
     2941 tattgtagag aagaaagaat catgtcatca tcacatgctg atcgatacct tcaagcctgc
     3001 gatcatgctt ttgacgtata tagcaaaaat attcaaccaa tgcagagatt tatttcagag
     3061 gttgatccaa ttgatcgatt cttttttttc gattctttgt caaaaaaaga tataccctac
     3121 aataatttga agtctgagaa agatattgaa tctgctagac gtgtatacaa tgcaacgatc
     3181 agggccaaat cacttgatgt tcttcgcgga cttttacctg catccactct tacaaattta
     3241 gccattacag gtaatggtag agcatttgaa tatttgctat cgacaatgta tgcttcaaag
     3301 ttaaatgaag taaaaaattt ggcagaacag ctacatacag aactaaacca agttattgca
     3361 gcttttgtaa gaagagccaa tgacaagtat ggcagaagcc ttcagtccta ccttgcaaat
     3421 acaaggagtg caatatctga gcttgtacaa catcatataa aaaatatcga actagatgaa
     3481 gaaaacacac gatcagtaaa actgataaat tttgaagata atattgatgc agaaataaaa
     3541 atagtctcag ccattctata tgaacatgca aaaggtcaat cacttgagaa aatcataaag
     3601 tataccaaat ctattacacc agaagataga cataagataa ttcagacata tacaaaattt
     3661 cggactaatc gaagacatag accgggtaga gcatttgaga tggtagaata tacatttgaa
     3721 atgcttacaa attttggaat gttccgggat atgcatcgtc atagaatttt aactttagaa
     3781 aggcaattgc tttctaccag gcatggatat gatattcctg ccgaagttat tgatttggat
     3841 attgtcaaag attataaaga ttgtatgtac aaatctaatg aggcatacga aattatttca
     3901 aagaatctgc ctgaagaagc tcaatatgtg gttaatttcg catataaata cccttacttt
     3961 attaaggtaa acctacgtga agcatgtcat ctgatcgaac tacgaactac tccccaagga
     4021 catcaggact atcgtgacat atgccagaaa atgtttgggc aaataaagct tgttcatcca
     4081 ctccttgcag aggaaatgaa attcgttgac ctaaataaat atgagctaga gagatttaat
     4141 gccgagaaaa atgtagaaaa gaaaagatca gaattacatt agttagctaa accaattttc
     4201 gagtgattga ttgcgatgtg aaatggatct tcttagcttt tctattgctg catttacacg
     4261 ctctgcagaa aaattttttt cagtgcatag aaaattaact atactattat aatttacttc
     4321 gttaaattgt atattataca cctttggagt ttctggtttt aaatatatat tccgtatttc
     4381 ctgatatggg atatccgata acaaatgctt aattttctca atgttttcta gtttaccata
     4441 ttctcgaatt aactttaaag ctgttttagg cccgattcct gcaaagcctt ctggattaaa
     4501 gtcagtgcct atcaaaattc cgacatctac caattgctcg tgtgtcaatt tagtttgatt
     4561 aagaacccgt tcatactcaa taatttctgg ctcaactgcc atgtatgctt tcttattggg
     4621 aacttttctt ttgccgctga ttgtaagatt acgtgtaagt tttctggcgc caaacaatat
     4681 ggaatcataa tcctggcttg cgcatgtaaa tgcagtacct tgttttgtca tgtatgcagc
     4741 agcagcctca ccctcagaag gtgatagaac aaaagggatt ccaagtagag tcaggagctt
     4801 tttagattct tccaccatct tatctgttaa aatagaagta gcctggctgt actttcgtgc
     4861 atcttctact ctaccctctg tgattgcttc atggtatctt tcagatgctt cctgttttat
     4921 ttgacgtcgt cgttcaatct cttttaactt tagaggatta ggtttgccat caaaaacgta
     4981 aataagtttt atattatctg caagcaaatt gatatttcga tagaaaaggc cactaagatg
     5041 acttgttaca tcaccatcgg tgcttgtaag taattcgcct gttggaccac gaattgtggc
     5101 gagaaattga tagattgcat tgtatgcgtc aactgctaca atcttatttg ataattcaga
     5161 tatcgtaata ggataaggct ctacaagtag ttttagatct aaccccatta cataaattag
     5221 gtaatagaga gattttactt tttcttcaaa ttcttcttta cagattccca acccaaagtg
     5281 acgatttcct catagacatt agacagttta ggtatagaac cttcattttc agcggctgcc
     5341 tttactttag tgcgataata attttctata tcatgagcag ttttgctatc aatagtaata
     5401 gaaattcgtg ctttaggcat tatagctaac gttttaattt gctttattaa tttttactca
     5461 ttataaacgg ttacccagtg gttttacaga atctgagggc agtaatttac atatttatcc
     5521 ttatgtttag ttatctatgg gctaatatag caaatattaa tgatggaacg ccgggagtgg
     5581 gatttgaacc cacgagtccc gaaggacatc agctaacaca tcaattatgg atctcgaggc
     5641 tgacccctgt tagggctcta gacttaccta gcttgggtac cccggcactt tttttgatag
     5701 gatattgcaa tttaatgttt ttccgaaata aagaatttca tcgatgtcta ataatattac
     5761 gatttaggag acatcgaatg tctgtgatca tctatccgtt ttcaaaatat gttttcattc
     5821 caattgtaca ttcaaattgg attagattat ataaatgaag gttattaagg ctatgtgtgc
     5881 tagtgtctct aaagccacct actattgaag aaattaagaa gttatccgta actgatattg
     5941 tgacgatggg tgcattagct ggttcgttga gggatcagct agaaaaatat attgaaattg
     6001 atccatatac catgcccgat cctttcagtg ataaagatga ctgcaattat tctgttattg
     6061 ttgatagaga aggaccacat aggatagttg caatgattgc tattaagaag gatccactac
     6121 ccca
//
LOCUS       DASQSJ010000005         2790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_120261, whole genome shotgun sequence.
ACCESSION   DASQSJ010000005 DASQSJ010000000
VERSION     DASQSJ010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120261"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VE223_00095"
     CDS             <1..330
                     /locus_tag="VE223_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HZC20021.1"
                     /translation="EKLENDNIIKFYSAVLDHEKLGYDLTAIIEVTAVKGKISEVERH
                     IAKLPNVCAVYDITGLTDMVIIAKFKNRKDLSNFVKKDLSMSFVERTNTHIVLLTVKE
                     DFRFIDS"
     gene            complement(1750..2328)
                     /locus_tag="VE223_00100"
     CDS             complement(1750..2328)
                     /locus_tag="VE223_00100"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZC20022.1"
                     /translation="MTKSFSSSTPSKVVVEIGMGDGRLLEKLVKCDGNIHSTYIGIEL
                     DKQQYENAKRRINFVNTILLNGSFEDILPTFPDDFFDLVIAVLPDPDFIDNLQQWKWE
                     SFYKVVYSKLKNHGLFQLITELTDESLQPIPDKIFYDWVEYLVTTFQSIGFVLLTKED
                     GAPSDYSTRCIDQFRGDPERIRMITLNFEKKD"
     gene            complement(2374..>2790)
                     /locus_tag="VE223_00105"
     CDS             complement(2374..>2790)
                     /locus_tag="VE223_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family peptide modification chaperone"
                     /protein_id="HZC20023.1"
                     /translation="VSDVKRYVGRINGIGNINVEVVWDPPWNIEKMEPTVREKMGFGK
                     PNLRFQIDYERYQPLKKGQVNKQDDGSLILINEKQQGFMINQAIVDFWYTCDGTKTIN
                     QLTDQFSTKLGMPRQQVEQEVVQLIQQLLEAELLNP"
BASE COUNT          948 a          464 c          478 g          900 t
ORIGIN      
        1 gaaaaattgg agaatgacaa tatcatcaaa ttttattccg cagtacttga tcatgagaaa
       61 ttaggttatg atttgactgc aatcatcgaa gttacagctg ttaaagggaa gatatcggaa
      121 gtagaaagac acatagcaaa gttgccaaat gtgtgtgctg tatatgatat tactggatta
      181 acagatatgg taataatcgc aaaattcaag aatcgcaagg atcttagcaa ctttgtaaaa
      241 aaagatttat cgatgtcatt tgttgaaaga actaacaccc atatcgtatt attaactgtc
      301 aaagaagatt ttcgatttat agatagttaa aatgtatata caagtataca agtataataa
      361 taaccagcag ttctacaaat tcctttacat tactgcatat tagcagttga tttctctgtc
      421 agactaaaga aatccaagat gtcattatta tcttcccata tttgctattt taaataataa
      481 tctctactag tatactgcga gaaccctagg aatattttag gaatctttac aacaaactag
      541 caaagataag agtgccaatt acactcttag cacatcatgg atagtatgag gattaaggca
      601 attgaagtat cagaagcaaa cacttcgaaa tactgtagga aatgctatca aaaagatgaa
      661 caaaggatac aaggattgtt taattgtatc gatccaaatt gcaatataaa ggaagacaat
      721 gctgactgaa acgctgcttt tagtattgca tattgggctt gatatattca ttctaaagta
      781 gggttaactg tgaagatacc caagttgaga actctttgta gtatagaaga atacgatgat
      841 cacaagagaa acctccttta aaccagaggt agtagtcacc taatggtaat ccaaagtaaa
      901 ggaaagactt gtgcttattg tacgagaaga gctagtatat acatatataa caaaccagta
      961 tgtcaaaatt tatctggttg catttgccaa aacctttatc tcttatgaat ctaattggaa
     1021 ttcagaaata taattgattc aatggcatcg aggacacaag aagtgtgatt ttgaaaagcg
     1081 cattcaacta tacctgaagc ggactcatga caaagatcga aagaatagct aaacgtagta
     1141 tgaacttcct aaaacttgtc tggtgatcat atcttaatgt ctaactttat ataacatctg
     1201 tttgacaagt gttgtagtat tccaaacttc tacacgatgg gaaacaatta gaacaggtat
     1261 attctgcaaa gttaggaaaa cctgtatttg gtatacatgg cctgagatta tcctataaaa
     1321 gtcaaagcca gctgaagaat tcgagtgtaa actatggaca gttaaagaga ctaaaggagg
     1381 agaacactcc atggttgctg gaaagtgtta tgtcagatcg catttaagtt tcaacgacta
     1441 tggatcagca aaagaagtgt agctattgtg gaaatatatg catgatcctc cttctgaatg
     1501 tcaaacagaa tatagcaata atagtgaaag atctgaaatt agaaagatat ttttctccaa
     1561 caaacatatt ccatctggat catattcaat atatttatta ttcatttaga gttaaccaat
     1621 tgtatttgta tgctattact tctaatttct catagttggc ccaatatgga catgttggat
     1681 ccatagttaa ctatatgtat gtcacaaaca ggatccgttc taaagtgaat attccatgca
     1741 aacctgtgtt taatcttttt tttcgaaatt caatgtaatc attcgtatac gttcgggatc
     1801 acctctgaat tggtctatgc atcttgttga atagtctgat ggagcgccat cttccttagt
     1861 caataggaca aatcctatgg attgaaaggt tgttacaaga tattcaaccc aatcgtaaaa
     1921 tatcttgtca ggtattggtt gcaatgactc atcggttagt tctgtaataa gctgaaataa
     1981 accatgattt tttaattttg aatagacaac tttgtagaat gattcccatt tccactgttg
     2041 gagattatcg ataaaatccg gatctggcaa taccgcaata actaaatcaa agaagtcatc
     2101 cgggaaagta ggaagaatgt cctcaaaaga gccgttcaat aatatggtat tgacaaaatt
     2161 aatccttctt ttggcatttt catattgttg tttgtctagt tctatcccaa tataagtaga
     2221 atgaatattg ccgtcacatt ttactagttt ttctaaaagt cgtccatcac ccatgcctat
     2281 ctcaacaaca acttttgaag gtgttgatga actgaatgat tttgtcatag tgtaaactaa
     2341 atctaatttt agataaggtg aaaaatccca taatcaggga ttaagcaact cggcttcaag
     2401 taattgttga ataagctgaa ctacttcttg ttcaacttgc tgtcttggca ttccaagttt
     2461 agtagaaaac tgatccgtca gctgattgat tgtctttgtc ccatcacatg tataccagaa
     2521 atctacaatt gcttgattta tcataaatcc ctgttgtttc tcgtttataa gaattaatga
     2581 accgtcatct tgtttgttga cttgaccctt ttttagaggt tgataccttt cataatctat
     2641 ttgaaatcga agatttggtt ttccgaatcc catcttttct cttacagttg gctccatctt
     2701 ctcaatattc catggcggat cccagacaac ttctacatta atattgccaa taccattgat
     2761 cctgccaaca tatcttttta catcactgac
//
LOCUS       DASQSJ010000006         5812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_80824, whole genome shotgun sequence.
ACCESSION   DASQSJ010000006 DASQSJ010000000
VERSION     DASQSJ010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5812
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80824"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..647)
                     /locus_tag="VE223_00110"
     CDS             complement(66..647)
                     /locus_tag="VE223_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20024.1"
                     /translation="MSDPVLLFDNLSGRWFASISDITIHSIRVAVSKTDDPTGVWRIY
                     NIPFGLQSNNCSDQPFIGLSKDKFVITVNNWDNDCDWHSDNRPPKFMGVQFTVGCKAD
                     LLSGSRSAKSIQSEPELTYFSLHPAIAFTPTTTLLIVTTGDFNHNNVQALYIDGHSLY
                     HLQLELVSYGIQDTHVAPDGIQPMVQVARQVTN"
     gene            complement(700..930)
                     /locus_tag="VE223_00115"
     CDS             complement(700..930)
                     /locus_tag="VE223_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20025.1"
                     /translation="MNNLRTLTNKQWPLSHRSNYFNITAIVSAKFEGLSQNCCVSPDI
                     QVAAGTKHVVEMVNLDGAIYTKKWNSSKVFWT"
     gene            complement(1068..1367)
                     /locus_tag="VE223_00120"
     CDS             complement(1068..1367)
                     /locus_tag="VE223_00120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20026.1"
                     /translation="MEISNLCYSNIVTSLILIIIISTFLPNYTATINAYSNTSTLPES
                     FGSFKGGIIGKSMISSALKSHSIALKTYNTTDMISYVGEVNVSNLTRPLFKPFAL"
     gene            complement(1527..2264)
                     /locus_tag="VE223_00125"
     CDS             complement(1527..2264)
                     /locus_tag="VE223_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20027.1"
                     /translation="MYGSRALEYHQSVPQAIRAILNSNNLYFQALISGIANYAALAQK
                     IKPAVEEITGVEVQIGTIVVAIKRFADTLTKERQQHEEGNKSNVDNRIEGARMSLTGS
                     IIDIDFNYKEFDEIFDMLDEVFENDSGSYNLIQTNKQLTLFTEDIEEIRNIVSTASKR
                     FDGKIKEGLSKITITLPSSTASASSDKEPQHQKPYYNMLSLVSDVLYNNQITLYNAFF
                     ALNEIVLILNDKDAARAYELLRAKISR"
     gene            2361..2900
                     /gene="hsp20"
                     /locus_tag="VE223_00130"
     CDS             2361..2900
                     /gene="hsp20"
                     /locus_tag="VE223_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HZC20028.1"
                     /translation="MWRDPFWNIRNTSRIFEDIDKEFADAEDMLGRMFRTVREISPSE
                     LTNFPYYYGYQVTIGPDGRPHVREFGNVKPSAKGLVEQSGTRAPLIDTALDEKQNMLK
                     ITAEMPGVNKEDIKVNVSDQYVSIHAEKGEKKYHADIPVDVELDDASAKATYTNGILE
                     LKMKLKQDPKSKAKEIRVE"
     gene            2958..5249
                     /locus_tag="VE223_00135"
     CDS             2958..5249
                     /locus_tag="VE223_00135"
                     /inference="COORDINATES: protein motif:HMM:TIGR01243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HZC20029.1"
                     /translation="MKDDNDNNKGNNLTLRVAETNPKFVGRGVALVDPKVMEKLDLST
                     GDVVEIRSARKKTFVLLWSSQPADYGRGLIRIDGYTRNNIGIGIDDRVNVQKAADVKK
                     ADQVILSPTEELNIVGLEEHLPELLEGRVVAKGDVIPLNIMGRKIGFVITSISPSSDG
                     ASLVDSNLTEFIIGSVPKAGVKGGSAVPRITYEDIGGLKNEVQKVREMIELPLRHPEI
                     FERIGIEAPKGVLLYGPPGTGKTLLAKAVANETNANFYSIGGPEIMSKFYGESEERLR
                     ETFKQAQENSPSIIFIDEIDSIAPKREEVSGDVEKRVVSQLLSLMDGIEGRGKLVVIG
                     ATNRPNALDPALRRPGRFDREIEIGIPDEQGRYDILQIHTRGMPLTEDVNLESIAKVT
                     HGFVGADLEALSKEAAMRSLRRVLPEINMEQNKIPVEVLNKIKITNEDFQNALKDVQP
                     SAMREVQIQRPNVSWDDIGGLPEVKEELAEAIEWPLKHADLFNQADVKPPKGLLLYGP
                     PGTGKTMIAKAVATTSEANFISVKGPELLSKWVGESEKGVREIFRKARQAAPCIVFFD
                     ELDAVAPRRGRSEGDAHVTERVISQMLTEMDGLEDLKGVVVIGATNRPDILDEALLRP
                     GRFDRILEVPLPDKEARKDILKIHTKRKPLDNTVDMDKLVELTGGFTGADIAAIVNAA
                     AMSAIKEYVATINENNKVRVENKTADPNITPNTTIKGEGDKSQDKQKEDKRPGLKITM
                     KHFESALQKIKKKTTAINNPSLV"
     gene            5292..5555
                     /locus_tag="VE223_00140"
     CDS             5292..5555
                     /locus_tag="VE223_00140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20030.1"
                     /translation="MITRSKFVNAVAVEANANATTSSNIIIDQQTAMLKKPARSRVDY
                     NFFNYCSQCDIKLSKQMLRCPDCRQKVRTRPWHRSKIIEFRRM"
BASE COUNT         1982 a          958 c         1198 g         1674 t
ORIGIN      
        1 tccctgatac caaatagcat tttgtatacg agcatctcct gtgttaacct taggttgttg
       61 ttctcctagt tagtaacctg tctagcaact tgtaccatag gctgaatgcc atctggtgct
      121 acatgagtat cttgaatacc atacgatact aactcaagtt gtaaatggta taaagagtgg
      181 ccgtcaatat acaaggcttg aacattgtta tgattaaaat caccagtagt gactattaac
      241 aacgttgttg taggggtaaa agcgattgca ggatgtaatg aaaaataagt tagctctggt
      301 tcagattgga tagatttcgc agatcgtgat ccactgagca gatctgcctt acatcctacc
      361 gtaaattgaa ctcccataaa tttaggtggt cggttatctg aatgccagtc acaatcatta
      421 tcccaattat taacggtaat tacaaactta tctttgctta acccaatgaa tggttgatca
      481 gagcaattat tggattgaag cccaaaaggt atgttgtaga ttctccagac tcctgtagga
      541 tcatctgttt tagaaacagc tacgcgaata ctgtgtatgg ttatatcaga gatggaagca
      601 aaccatcttc cagataagtt gtcgaacaag agtaccggat cactcataat agcatctgat
      661 ccttgtgaag ccctcacgat ggtaggacta aagagaaatt caagtccaaa agactttaga
      721 agagttccat ttttttgtat aaatcgctcc atcaagatta accatttcta ctacatgttt
      781 tgttccagcc gcaacttgta tatctggaga gacacaacag ttctgcgata agccttcaaa
      841 ctttgccgaa actatggcag tgatattgaa ataattgctt ctatgcgaca gtggccattg
      901 tttgtttgtc agcgtcctca aattattcat tgaagaacta ctagaagtat aagaatgggg
      961 ttcaatttca agaacgcttg tactaggttt tacaatttct gattgattct ttgccgattt
     1021 ataagcttgg aaattccttg ttagatagga ctcctttgaa tttattccta caaagcaaag
     1081 ggtttaaaca aaggtcttgt caagttgctt acatttactt ctcctacata cgatatcatg
     1141 tcagtggtgt tgtatgtctt taaggcaata ctgtgagatt ttaatgcaga agaaatcata
     1201 cttttaccaa taattccacc cttaaaagat ccaaatgatt caggaagtgt tgaagtattg
     1261 ctatatgcat ttatggtagc ggtataattc ggaagaaaag tcgagattat tataattaag
     1321 attagagatg taacgatatt gctataacat aaattactta tctccatatc gtcatagtat
     1381 gccactaagt atttgtgtat accttatatg tttaacaata tgttaattag ctgttgtcac
     1441 tatgcgaaca ttcaatttta cttgttccaa aataaaagtt catcaaaata actactactt
     1501 ctttaatgga acaaattata aatatatcat cttgatatct ttgctctcaa caattcgtaa
     1561 gctctagcag catctttatc attcaatata agcacaattt cgttaagagc gaaaaatgca
     1621 ttatacagag tgatttggtt attgtagaga acatctgaca ctaatgatag catattatag
     1681 tatggttttt gatgctgcgg ttctttatca gaggaagcag aagcagtaga agatggaaga
     1741 gtgatagtga tctttgaaag tccttctttt atcttaccat caaatctttt agaggcagtc
     1801 gacacaatat ttctaatttc ttcaatatct tctgtgaata atgtcaattg tttatttgtc
     1861 tgaatcaggt tgtaacttcc actatcattt tcaaacactt cgtcgagcat atcaaagatc
     1921 tcatcaaatt ctttatagtt aaaatcgatg tcaattatgc tacctgttaa tgacatccta
     1981 gctccttcta ttcgattatc tacatttgat ttgtttcctt cttcatgctg ctggcgttct
     2041 ttggttaatg tgtctgcaaa tcgtttgatt gcaactacta tagtacctat ctgaacttca
     2101 acgcctgtaa tttcttctac cgcaggctta attttttgtg ccaaagctgc ataattggct
     2161 attcctgaaa tgagcgcttg gaagtacaga ttattagagt taagaattgc acgtatagct
     2221 tgagggacag attgatggta ttcaagtgct cgactaccgt acatacatgt tataattgcc
     2281 gtatataggt aataaaggtt ttgctacgta agaaaggatt atatattgta atagacatta
     2341 caatatgtca ggtgacacaa atgtggagag atccgttttg gaatattagg aacactagta
     2401 gaatttttga agatatagac aaagagtttg cagatgctga agatatgttg gggagaatgt
     2461 tcaggacagt tagggaaata agtccatcag aactcactaa ctttccatat tattatggat
     2521 accaagtaac aataggccct gatggcagac cccatgtaag agaatttggc aatgtgaaac
     2581 cgtctgcaaa gggccttgta gaacaaagtg gtacaagggc accattgatc gatactgcat
     2641 tagatgagaa gcaaaatatg ttgaaaatca cagcagagat gcctggtgta aacaaggaag
     2701 atatcaaagt aaatgtgtcc gaccaatatg tctccataca tgcagaaaaa ggtgaaaaga
     2761 agtatcatgc agacatacca gtcgatgttg agctagatga tgcttctgca aaggcgactt
     2821 atacaaatgg catactggag ctcaaaatga agctaaagca agatcccaaa tcaaaggcca
     2881 aagagataag ggtggagtaa aagattagac acgatgtccc aatatctatt tttgaatcga
     2941 ggtgacaaca tatgaatatg aaagacgata atgataataa taagggcaat aatctaacgt
     3001 taagggtggc tgagactaat cccaaatttg taggtagagg agtagcactt gttgatccaa
     3061 aggtgatgga gaagttagat ttgtctacag gcgatgtagt tgaaattaga agtgcgagaa
     3121 agaaaacttt tgttttatta tggtccagtc agccagctga ctatgggcgt ggattgatta
     3181 gaattgatgg ctatactcgt aacaatatag gtataggtat tgatgacaga gtaaacgttc
     3241 agaaagcagc tgatgtcaag aaggcagatc aagtaattct atcgcctaca gaagaattga
     3301 atattgtggg tttagaagaa catcttcctg aattacttga aggacgcgta gttgccaagg
     3361 gtgatgtgat tccacttaat ataatgggaa ggaaaattgg ttttgtaatt actagtatat
     3421 caccatcttc agatggagca tcgttagttg acagtaatct tacggagttt atcattggat
     3481 cagtacccaa agctggtgta aagggcggca gtgccgttcc taggataacc tacgaagaca
     3541 ttggtggtct gaaaaatgaa gttcaaaaag tacgggagat gattgaactt ccgctaagac
     3601 atccagagat ctttgagaga attggaattg aagcaccaaa aggcgtttta ctttatgggc
     3661 caccgggaac tggaaagacc ctgcttgcaa aggcagtagc caatgagaca aatgcaaact
     3721 tttattctat aggtggtcca gagataatga gtaaattcta tggagaaagt gaagagcgct
     3781 taagagaaac attcaagcaa gctcaagaaa attctccatc gattatattt atagacgaaa
     3841 tagactcaat cgccccgaaa agggaagagg tgtcaggaga tgtcgaaaaa agagtagttt
     3901 ctcaattgtt atcattaatg gatggaattg aaggaagagg taagcttgtt gtaataggtg
     3961 ctaccaatag gccaaatgca cttgatcctg cattacgacg tcccggcaga tttgataggg
     4021 agattgaaat aggaatacct gatgaacaag gcaggtatga tattctacaa attcatacta
     4081 ggggaatgcc actaactgaa gatgttaatt tagaatctat agccaaagtt acccatggat
     4141 ttgttggtgc tgacttggaa gcattaagta aagaagcggc catgcgttca cttcgaagag
     4201 tacttcctga aatcaacatg gaacaaaata agattcctgt tgaagtttta aataagatca
     4261 aaattacaaa tgaagatttc cagaatgcac taaaggatgt tcaaccatca gctatgagag
     4321 aagtacagat acaaagacca aatgttagct gggatgacat cggtggatta cccgaagtta
     4381 aagaagaatt agcagaggca atagaatggc cgttaaaaca tgcagattta ttcaatcaag
     4441 cagatgtgaa gccaccaaaa ggtttactgc tttatggtcc tcctggaaca ggaaagacaa
     4501 tgattgctaa agcagtagca actacttctg aggctaattt cattagtgta aaaggaccag
     4561 aactactgag taaatgggta ggggaatcag aaaaaggggt tagagaaata tttagaaaag
     4621 ctaggcaggc agctccatgc atagttttct ttgatgagct agatgcagtc gctccaagaa
     4681 gaggcaggtc tgaaggagat gcacacgtta cagaacgtgt aatcagccaa atgttaactg
     4741 aaatggatgg attggaagac cttaaaggag tagttgtaat aggtgcgaca aacagaccag
     4801 acatactaga cgaagcattg ctaagacctg gcagatttga ccgaatactt gaagtaccat
     4861 tgccagataa ggaggcaagg aaagatatat tgaaaatcca cactaaaaga aaaccccttg
     4921 ataatactgt ggatatggac aaactagtag agttaacagg tggatttaca ggagctgata
     4981 ttgcagctat agtaaatgca gcagcaatgt cagcaattaa ggaatatgtt gctaccatca
     5041 atgaaaataa taaggttaga gtggagaata aaactgcaga tccaaatata actccaaata
     5101 caaccatcaa aggagaaggt gataaaagtc aggataaaca gaaagaagat aaaagaccag
     5161 gcttgaaaat tacaatgaaa cactttgaaa gcgccctcca aaagatcaaa aagaagacaa
     5221 ctgccattaa taatccaagt cttgtctaga tcaatataaa gaatacaaga ggaggttcaa
     5281 gccaaaaaca catgatcact agaagtaaat ttgtaaacgc agtagcagta gaagctaatg
     5341 ctaatgccac tactagtagt aatattatca tagaccaaca aaccgcaatg ttaaagaaac
     5401 cggctcgcag cagagtagac tataactttt ttaattattg ttctcagtgt gatataaaac
     5461 tctcaaaaca aatgctacgt tgtccagact gcaggcaaaa ggtaaggaca agaccatggc
     5521 atcgttcaaa aataatagaa ttcagaagaa tgtagaaatg ataaataaac ctagagatta
     5581 agatatacat gcatgtgata ataaacttca ctttattaaa gaatcgttgc tgttgttgtc
     5641 tagagaataa tgatatccaa gcttttgcag cattgttact aaaatctgtt attgcatcag
     5701 ctgttctatt atagattctc aggttctccc ttgctgcatc tattgcattg attaccagcc
     5761 tgattgttaa ttcctactgt tctacagtat tgctagtgat ttcatttgct tg
//
LOCUS       DASQSJ010000007         2988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_439013, whole genome shotgun sequence.
ACCESSION   DASQSJ010000007 DASQSJ010000000
VERSION     DASQSJ010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439013"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1266)
                     /locus_tag="VE223_00145"
     CDS             complement(<1..1266)
                     /locus_tag="VE223_00145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20031.1"
                     /translation="MTVNPLPPSNSPEKRSEILYGVENAVGRGVYFMSNVKRRMDIYF
                     DHRAPSIVVEIPEYKNGYIDIRKRGGKIRAFTEITKDNIHYCKELIKLVDELRHLNGV
                     KGGIAVSESEYMATTLLEEAKPLTQVIFSSVKEVVEQGQYIFDTLWNTAIPAEQKIRE
                     IEEGVVPIRTRLINKQDEIIKQICHLNNSAERLSICSTFGGMQMSYRHFFDSYKRIVE
                     RNRSIDNIVSGNDLLRWIINIDKDNLDLVKIFLQHRIQIRHVKNMPPMNFGVSDKEVA
                     LTIEKMEGGNVSQSFLISNEPLYVSHFNSLFEELWKNGIDAKDRIKAIEDGVDTEGIE
                     IIQNPAEIQKFSFDLVKSAREELLLLYSSANAFHRQEYVGAIQSLKEAAYKRGVNVRI
                     LTPADDSIVKTAQRWTEQQQQQEKEQLLNP"
     gene            complement(1713..1880)
                     /locus_tag="VE223_00150"
     CDS             complement(1713..1880)
                     /locus_tag="VE223_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20032.1"
                     /translation="MLCSHHVLDYEKKSMKITWLRCKTCGNIFGWLEDDRQKIEGKVV
                     RMSYSEKIRLR"
     gene            2418..>2988
                     /locus_tag="VE223_00155"
     CDS             2418..>2988
                     /locus_tag="VE223_00155"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HZC20033.1"
                     /translation="MVGLALLLIATILITASSVLTKPMQIASSNSLFSKTTSPNLVSP
                     SNSQTIINNNTTITQGPSNQAKIKVVASFFPIYEFVKAVGGDKIDASVLIPVGAEPHD
                     FDPTIQQIQNVQSADMLVYNGAGMEASWINKTNPKFSVDSSKGIKLVADADPAIHAST
                     DPHIWLDPILAIHQIENIRDGLIKVDPRNA"
BASE COUNT          881 a          580 c          471 g         1056 t
ORIGIN      
        1 cggatttagt aattgttctt tttcctgctg ttgttgttgt tctgtccatc gctgtgctgt
       61 ctttacaatc gaatcgtctg ctggagtcaa gattctaacg tttacacctc ttttgtatgc
      121 tgcttctttt agagattgaa ttgctcctac atattcctgg cgatgaaatg cgttagcact
      181 ggaatatagc aacagtaatt cttcccttgc tgatttaaca agatcaaaac taaacttttg
      241 tatctctgca ggattttgaa taatctctat tccttcagta tcgactccat cctcaatggc
      301 ttttattcta tccttggcat cgattccatt tttccataac tcttcaaata aagaattaaa
      361 gtgacttaca tacaatggtt cattactaat taagaagctc tggcttacat taccaccttc
      421 catcttctct atcgtaaggg ctacttcttt gtctgataca ccaaaattca tgggcggcat
      481 attcttgaca tgtcttattt gtatcctatg ttggaggaat atttttacta aatccagatt
      541 atctttatct atgttaataa tccatcttag taagtcattg ccgctaacaa tattatctat
      601 acttctattc ctctcaacta tcctcttgta ggagtcaaag aaatgtctgt aactcatttg
      661 cattccacca aatgttgagc aaattgataa cctttcagca ctattgttta agtggcatat
      721 ttgtttgata atctcatctt gtttatttat cagtcttgtt ctaataggta ctactccctc
      781 ttctatctct cttatcttct gttcggctgg aattgcagtg ttccataagg tatcaaatat
      841 gtattgccct tgttccacaa cttctttaac actgctgaaa ataacttgtg tcaatggttt
      901 tgcttcttct aagagtgtag ttgccatata ctcagattca ctaacagcta ttcctccctt
      961 aactccgttc aaatgacgta attcgtcgac caatttaatt aactccttac aatagtgaat
     1021 attgtctttt gtaatttcgg taaaagctct tatttttcct cctctttttc ttatgtcaat
     1081 atatccattc ttgtattctg gtatctctac tactatagat ggggctctat ggtcaaaata
     1141 tatatccatt ctcctcttta catttgacat aaaatacact ccccttccta cggcattctc
     1201 taccccatat aatatctcag atctcttttc tggagaattc gatggaggaa gcggattgac
     1261 agtcaatata attaaaagac gtaaatgttc cttataaaat taagaaccaa gaaagtagtt
     1321 atttatcaca tgtttctgat gcagtaacga tagtgacgtc tgtatacttc atgtatgtat
     1381 tcaaacccat atctgaagat ctatatcaag tcctaaacca gcggcctttg cagaaacacc
     1441 tacaataact accgattacg cggtatcgcc tatcttggaa tgttttgaag attgtcttca
     1501 acacatgcca ttgaaaacta atatgtatat tcaaaatgag ccattgaact tgtttaacta
     1561 ttttcctgag ctgaaggata tattatgcat acaaaaagaa atatttctgt tgctcctgtg
     1621 tgagatcttg ctggacaaaa aagggaacat ggctgaattt tctgctggat aataaatttg
     1681 atcggtaata atatcttcat tttactggtg cattatctta atcttatctt ctctgagtat
     1741 gacattctta caacctttcc ttcgatcttt tgtctatcgt cttctaacca accaaagata
     1801 ttgccgcatg ttttacatcg tagccatgtg attttcatac tcttcttttc atagtcaagt
     1861 acatggtgtg aacacagcat taaatttaaa ataatgactg caatggtatt ataatacctt
     1921 tgtaataaaa ccgatggctc atatctaagc ggcttctttg accacctatt ccaatagaga
     1981 atcaatcaca ttatcttata ctttattaga tacactctgg tccaaagtga aataaagatt
     2041 cgaaatcact atatatcata tagtgatttt atagtagatt tgaaattaga ctcttttttg
     2101 taagccaact gccgttagtt gtagcccata tatatctact aatctggtca taactcctgt
     2161 ttatggccaa gagggtgctc ttcctaccgc taacgcaggc tcatcacaaa tagtaagcct
     2221 ggacgccctt gatggaggca atactcgctg ccctaaggtg ataattcgta ttattgctgt
     2281 atcaaaagta actttgcttg ttttagatag gctatacgga atagtgcaat tattaagcaa
     2341 tttgtatatg tataataatt tttattaaaa aagatttata taattaataa ttatgtaatg
     2401 gtggtatgaa tgtgattatg gtaggtttag cgttgctatt gatcgcaacg atattaatta
     2461 ctgcttcttc tgttttgaca aaaccaatgc agatagcttc ttcaaattca cttttttcaa
     2521 agaccacgag tcctaatttg gtcagtcctt cgaattctca gactataata aataacaaca
     2581 caacaataac ccaaggacca tctaatcaag ccaaaatcaa agttgttgca tcgttctttc
     2641 caatttatga atttgttaaa gctgttggag gagataaaat agatgcatcg gttcttattc
     2701 ctgttggtgc agaacctcat gattttgatc ctaccataca acaaatacag aatgttcaat
     2761 cagcagatat gttagtatat aatggtgcgg ggatggaggc tagttggata aacaagacaa
     2821 atccgaagtt ttcagttgat agcagcaaag gaatcaagtt agttgcagat gctgaccctg
     2881 ctattcatgc atctactgac cctcatatat ggctagatcc aatactcgca atacatcaaa
     2941 ttgaaaacat tcgtgatgga ttgataaagg tggacccaag gaacgcag
//
LOCUS       DASQSJ010000008         5721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_439097, whole genome shotgun sequence.
ACCESSION   DASQSJ010000008 DASQSJ010000000
VERSION     DASQSJ010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5721
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_439097"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VE223_00160"
     CDS             <1..316
                     /locus_tag="VE223_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HZC20034.1"
                     /translation="EFEYKKGTDLEAKRVGFGSYGSGSSAMVFSGVIQPQYKEIVKRM
                     NLDVEIGPRKKVSMEEYGKLHENGISFNDSILQTSKEFILAKIGGSTADKAGLREYAY
                     IN"
     gene            complement(885..1100)
                     /locus_tag="VE223_00165"
     CDS             complement(885..1100)
                     /locus_tag="VE223_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HZC20035.1"
                     /translation="MTHVAKIIEIVGSSDKSWQDAAQAALNEAKKTIHGIKGVEVGDM
                     TAKVDPNNGNITEYHTAVKIAFGVEHG"
     gene            complement(1144..1398)
                     /locus_tag="VE223_00170"
     CDS             complement(1144..1398)
                     /locus_tag="VE223_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20036.1"
                     /translation="MHNRKFLSSIPKEIATPIVNLTLTHVRSDLIAFQSNKPNRIDNT
                     IIHLQPTSRIIAAILDVKKMPIRITNTKLQHAGIVGTSLS"
     gene            1558..2478
                     /locus_tag="VE223_00175"
     CDS             1558..2478
                     /locus_tag="VE223_00175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20037.1"
                     /translation="MSQCQSVSEAITVKGKEPSSFSNPTLTPPANSVNLDYYGAKNKS
                     TKDIALLSNVSVLNNKEKEKQVSSITYTVKFECGVISEDAGLLMPGYYDTDLSILNKQ
                     GYPITVLLNVIVNNSNQSSNSIIKTLHPLESTGISCKDILSIFNIKGQEIVEGFMIIF
                     APLDNGVLNSLTNSGAINTAPLQLHPLPDQLNLLDVRLFYSANSFASSPQNQIVNKIG
                     FSILNDVSGKIPHPMLLKTLYVTLQSQTNTIFEPQIQVKRILADKYNLSKSEETSLKV
                     KIYDVDTIPASLLDRHAISSLQIQPQTNYQ"
     gene            complement(2597..3808)
                     /gene="ilvA"
                     /locus_tag="VE223_00180"
     CDS             complement(2597..3808)
                     /gene="ilvA"
                     /locus_tag="VE223_00180"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006549 - isoleucine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HZC20038.1"
                     /translation="MVPTIEDVFRARDLLDGSVKRTPLQKSHTFSKLTGTNIFLKLES
                     LQKTGSFKVRGALAKVSMLSEEQKKYGVVAASAGNHAQGVAYAASRNNISCTIIMPQD
                     ASPAKVAATKSYGAKVILQGSGYEEAWIAAQEIAKKESRTIIHAFDDAQVIAGQGTIG
                     LELLEDLPDLNQVYIPIGGGGLAAGTAIAIKSKKPHVRIIGVESRAFPAMKESLAKGS
                     LQNIKAGYTIADGISVKSPGELTYKIATKYIDDVMLVDDSSIVKTMFLLMERAKLVIE
                     PSGAASLAYLLSNTHLKKDENIVSLLSGGNIDMYLLGQVVAKGLMHMGRMLKIFIQLP
                     DKPGALKTVVDGIAELSVNIVEVEHDRLSANISAGTAGVYLSLEMEDETHAERLIEFL
                     RIKGIQFRVVS"
     gene            complement(4107..4982)
                     /locus_tag="VE223_00185"
     CDS             complement(4107..4982)
                     /locus_tag="VE223_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20039.1"
                     /translation="MRLPFKDNDYFTKNVNSAFENIRSAYLRAIAPQLTKKKVNVMLG
                     DGSIIQSDTFDLNRIIVFYQNLINELKGWTTAGISRSNTDDLHRLYCEFTQAAGKYHL
                     HGYFGIQFHILQYYRIDKSVITIQKELAQIVNKASETFKSMAGRGNDILSDELERIGY
                     ANIGSEELFTELFGNRTLFEHLEGKAMSIENEFPEFEEIHQKKIQLFSELNNLLVKLY
                     QISPTSIDYNQLMQGEEGVVIYFDIEMIKNQKTNEKDSYINSKRITIDSTWQILSKLN
                     EVEKTLQHIVNDEQS"
BASE COUNT         1741 a         1063 c          968 g         1949 t
ORIGIN      
        1 tgaatttgaa tataagaagg gtactgatct agaagcaaag agggtgggct ttggatctta
       61 tggtagcggt agtagtgcca tggtttttag tggcgtaata cagccccaat ataaagagat
      121 agtaaaacga atgaatcttg atgtagaaat cggaccgcga aaaaaagtct ctatggaaga
      181 atatgggaaa ctacacgaaa acggaataag ctttaatgac tccattttac aaaccagtaa
      241 agaatttata ctggcgaaaa ttggcggcag tactgctgac aaagcaggat taagagaata
      301 tgcctacatc aactaatatg actcactcat atgttggcat cctatttact catccgatgc
      361 tacatcggca gtgttgttat tagaaaagta ccttgaaaca ccttctctct gtgttctcaa
      421 aacatcagtg tgtatttctt tgggattctg accgtttgca ttcttccaat cttctctaaa
      481 tattgctact gctgatacct ctagcttcag aaaacctttg aaggtgtaga gaaatttgtt
      541 aatggccctg aaattacaaa ttcaatgtaa gtctaatgag tttggatgca gacctttccc
      601 tttagcgtgg tattttcaat aaacttgtcc ttgcaatcct tctaaaacaa tgtcagacag
      661 cctactcttg aaataatgat ggataactct gcatgttatt gcattctggt aagactttgg
      721 actttggctg taggagtact acaacagaac caaaaatttg gttttgttga ccactcttga
      781 gaaatgttgt tgaaatagtg tgggcggtta tctattataa ccaactacaa cataatacct
      841 gttcttccct tgtttttctt ttgctctttt ctatcgtgta aatattaacc atgttctaca
      901 ccaaatgcta ttttgacagc tgtatgatat tctgtaatgt tcccattgtt tggatctact
      961 tttgcagtca tgtctccgac ttctacccct tttatgccat gtattgtctt cttggcttcg
     1021 ttcaatgcag cttgtgctgc atcctgccaa cttttgtcag aactgccaac tatttctatt
     1081 atttttgcaa catgtgtcat gaaaacactg aaaatgaacc tagaaatatt tctttctata
     1141 cgcttaggat aaacttgtcc cgacaatgcc tgcatgttgg agctttgtat ttgtaatcct
     1201 tatcggcatc ttttttacgt caagaatcgc tgctataatt cgtgatgtcg gttgtaggtg
     1261 tattatggtg ttatcaatcc tatttggttt gtttgactga aatgctatca aatctgatct
     1321 cacatgggtt aacgttaaat taacaattgg agtggctatc tcttttggaa ttgatgataa
     1381 gaatttacga ttatgcataa aagcagatat ttaaaaacat ctagacagcc atactataaa
     1441 ttattgaagt ttaataatga ttaaataaac aataaaatgg catgccagtc aaataattcc
     1501 aacggatctc gttgcgttat tactagggca actttattag tcacggctct tattttaatg
     1561 tcgcaatgtc aatcagttag tgaagctatc acggtcaaag gtaaagaacc ttcttcattc
     1621 tccaatccga cattgacgcc tccggcaaat agtgttaatt tagattacta tggggctaaa
     1681 aacaaatcca cgaaagatat tgctctgttg tcgaatgtgt ctgtgctaaa taataaagaa
     1741 aaagaaaaac aggtcagcag tataacttat accgtgaaat ttgaatgtgg tgttatatcc
     1801 gaagatgccg gtctgctgat gccgggatat tatgatactg atcttagtat tttaaataag
     1861 caagggtacc caatcacagt attattgaat gtgatagtca ataatagcaa tcaatcttct
     1921 aattctataa taaagacatt acaccctctg gaatcaacag gaataagctg taaggacatt
     1981 ttgagtatat tcaatattaa aggacaagag atagtggaag gatttatgat tatattcgcg
     2041 ccacttgaca atggtgtctt gaactctttg acaaatagtg gagcaataaa tactgctcct
     2101 ttacaattac atccattgcc agatcaactt aacttacttg atgtacgttt gttttactca
     2161 gcaaattcct ttgcatcttc tccacaaaat cagattgtaa acaaaatcgg cttttctatt
     2221 ctaaatgatg tgtccggtaa gattccgcat cctatgctat tgaagacgct atatgtgacc
     2281 ttgcagtccc aaacgaacac tatatttgag ccacagatcc aagtaaagag aattttagcg
     2341 gacaaataca atttatcaaa gtcagaagaa acaagtctaa aggtcaagat ctatgatgta
     2401 gacacgatac ctgcttcatt gttggatcga catgcaatct cttcattgca aatacaacca
     2461 caaactaatt atcaatagtg tataccttat cgaagttcga tgctgtattt ttatcgtctt
     2521 aagcgaggtt tcaactcgtt tttatatcaa tacattatat ttcgaaggcc gatctatgta
     2581 ataatgtata tgcatatcaa ctaactactc taaattgtat tccttttatt cgaagaaact
     2641 caattaaacg ctctgcgtgc gtttcatctt ccatttcaag acttagatat acacctgcag
     2701 ttccagcaga aatattagca cttaatcgat cgtgttctac ttcaacaata ttgacactaa
     2761 gctctgcaat accatccact accgtcttta atgctcccgg tttgtctggt agctgaataa
     2821 aaattttgag catcctgccc atatgcatta gccctttggc cacaacttgt ccaagtaagt
     2881 acatgtcaat attgcctcct gaaagtaatg atactatatt ttcgtctttc tttaaatggg
     2941 tatttgatag caaatacgca aggcttgcag ctccggatgg ttctatgact agttttgctc
     3001 tttccataag taaaaacatg gttttaacta ttgaagaatc atctactagc attacatcat
     3061 ctatatattt agtagctatt ttgtatgtca attcgccagg tgacttcaca gaaataccat
     3121 ctgcaatggt atatcctgcc tttatattct gcaaagaacc ctttgcaaga gattctttca
     3181 tagctggaaa agctctagat tctacaccga tgatcctcac atggggtttt tttgacttga
     3241 ttgcaattgc agtacctgcg gctagacctc ctccacctat tggaatatac acttgattaa
     3301 gatctggcaa atcctctaac agttctagac caattgttcc ttgtcctgct attacctggg
     3361 catcatcaaa agcatgaata attgtacggc tttctttctt cgcaatttct tgggctgcaa
     3421 tccaagcttc ttcataacct gatccctgta gaatcacttt tgcgccatat gattttgtag
     3481 ctgccacctt agctggtgaa gcgtcttgtg gcataatgat tgtacatgaa atgttattcc
     3541 ttgatgctgc atatgcgact ccttgtgcgt gattaccagc agacgcagca accacaccat
     3601 attttttctg ttcctctgat aacatactta ctttagcgag tgcccctcga actttaaatg
     3661 agcctgtctt ctgaagagat tcgagtttta aaaaaatatt ggttccagta agctttgaaa
     3721 atgtatgaga tttttgtaat ggtgttcttt taacggatcc atctagtaaa tccctagctc
     3781 taaacacatc ttcgatagtt gggaccattt gttttttctc tatacttgat atactaatgc
     3841 acccagttta cgcgttaatt ataatttgtg ttttggcatc tatcttcact gttctacaaa
     3901 tattgtcata acttgtagag catagaccgc tgttgtgatt aacaataata attatatcaa
     3961 acaattagtg ggtaataaaa gactttacaa ttcttctcta aacaaagaca aacctgtgaa
     4021 cttcgcaagg cgacattaat gcacatctaa tgctttataa caacataatg aagatggtat
     4081 gtgcattctg ctgtatctta ttgatgtcat gattgttcgt cattcactat gtgttgcagt
     4141 gttttttcta cctcatttag tttgctaaga atctgccatg ttgaatcgat tgttattctt
     4201 ttagaattaa tatatgaatc cttttcattg gttttctgat tcttgatcat ctcaatatca
     4261 aaatatatta caactccttc ctctccctgc attaattggt tataatctat tgatgttgga
     4321 gatatttgat acaatttaac caataaatta tttagctcac taaatagctg gatttttttt
     4381 tggtgtatct cttcaaattc tgggaattca ttttctattg acattgcttt accttctaga
     4441 tgttcaaaca gtgtcctatt cccaaatagt tcagtaaata gctcttcaga tccgatgttt
     4501 gcataaccaa ttctttctaa ttcatcagat agtatatcat ttcctctgcc agccattgat
     4561 ttgaatgtct ctgatgcttt gtttacaatt tgagctaatt ctttttgaat agtaataaca
     4621 cttttgtcaa ttctataata ctgcagtata tgaaattgaa ttccaaaata accatgcaga
     4681 tgatacttac cagctgcctg cgtaaactca caatatagac gatgtaggtc atctgtgtta
     4741 gatctagata tccctgctgt agtccatcct ttaagttcgt taatcaaatt ctgataaaat
     4801 actatgattc tatttaggtc aaaagtatca gactggatga tactaccatc tcccaacatg
     4861 acgttaactt ttttcttggt caactggggt gctatggccc tgagatacgc agatcgaatg
     4921 ttttcaaaag cagaatttac attcttcgta aaataatcat tatctttgaa tggtaatcgc
     4981 attctatttc gctatatctt atgtattaat taaatattgc aatacctttg acttaatagc
     5041 gggtgccata atggacacta tgaatatgtt cgttacctaa gggtatttag tttcgttaat
     5101 gacgcttact gtatgactga ctataaaatt tgagttatat attgtacact gagtacacgc
     5161 gtactcacca aaaaagtcct tataaaaaag taagaaacag gtcaatgagt aagcgctgaa
     5221 tcactatgtg actatgagat gcggagatca ttttaaaatc caattctgat attggttgac
     5281 acccttagct taacacaata tgggatatgg cagtcttgaa aaggggcata tcaatatgaa
     5341 tcaaatttaa aactagcaag atttctcaat aacaaaagtc aagattccgc ttgtaatcgt
     5401 tatgtagatc tatctgacca agaaactttg ctataaatgt ggttttcatg cagataccat
     5461 tttaacgaag cacagatttc aacacaggca ttaccagtga ttgttttccc ttttaaaagg
     5521 agtgttggtt cctaagaagg tttcataaat atgagatcaa caacagttca aatacgaagg
     5581 taattctaaa cgacaggttt tctattttat tattgataac tcatttttta gtctaaaata
     5641 taaattcccg acgtgaaaag agtagaaatt aaacaaccga cggtatagca ggtggctgct
     5701 ggacatattt tagtaaatcc c
//
LOCUS       DASQSJ010000009        10504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_81286, whole genome shotgun sequence.
ACCESSION   DASQSJ010000009 DASQSJ010000000
VERSION     DASQSJ010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10504
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81286"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1476
                     /locus_tag="VE223_00190"
     CDS             <1..1476
                     /locus_tag="VE223_00190"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HZC20040.1"
                     /translation="VAKLKNQTTLFDDKMTVERVYSTLDKIARTLGPGSQEAKLRLVS
                     SLLNNATPRESRYIMKFVMGTLRLGIADYSVMDALALAFTGDKSNRNTLGNAYNVSSD
                     LGAIAKLLSTTGLESVKSLQITLFKPIRPMLAERASISEEALGKMGRKAAAEYKLDGE
                     RIQVHKNKEKVELFSRRLEKITDHYPDVAEAIKSIRVDEAILEAEVVAINTNTDEFLP
                     FQELMHRRRKYGIKLAVENYPVVMNFFDVLYIDGDNKTSLTYIHRRKILEKIIKGSRN
                     EKLRLVPQTIVEKSEQIDKFMASAIESGCEGLMIKQLTSTYRAGSRASAWLKLKREYR
                     SDIADTLDLVITGALYGRGRRVGRYGALLLGAYDSKSDIFRSTCKVGTGFTDQLLEEL
                     YNNLENHLITHRHARVDTGMEMDVWFEPKIVIEIIASEITLSPSHTAAMNSIRPGYGL
                     ALRFPKFTGKIRYDKKPEDATDVEELVSLYKKQMRTITGGR"
     gene            complement(1584..1913)
                     /locus_tag="VE223_00195"
     CDS             complement(1584..1913)
                     /locus_tag="VE223_00195"
                     /inference="COORDINATES: protein motif:HMM:NF016308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gar1/Naf1 family protein"
                     /protein_id="HZC20041.1"
                     /translation="MVVAKLEERGEVMHLAKSGRLIIRLVTDNKETKNGELLVDANGK
                     PIGKVIEIIGPVNAPYASVAPMTDRINKIIGIKVFSGGFPPKRRISGSKNYRQHRNYV
                     HNSKVKR"
     gene            complement(2043..2363)
                     /locus_tag="VE223_00200"
     CDS             complement(2043..2363)
                     /locus_tag="VE223_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HZC20042.1"
                     /translation="MKDYEHIILWLDYFNKHLSKRKGRKVKRDRAVFDPTIIELIDAV
                     KSIGYNPLTEETNDKARYPRRSFVRSGYVMLPKSEDVKKTAIIDIVAEKMVQKRSKQK
                     TSQR"
     gene            2503..2952
                     /locus_tag="VE223_00205"
     CDS             2503..2952
                     /locus_tag="VE223_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HZC20043.1"
                     /translation="MARIHAHTHGKSHSARPTSKDIPSWITHSQGEVSSLVVQLSKEG
                     LTSSEIGSRLRDEYAIPLVKPILGKKITKVFDENNIKLDMPEDLNQLVQKAVGLQRHL
                     RAHNSDHRNVRSLELIEAKIHRLSRYYKRIGKLQKNWKYAAVIAQLE"
     gene            2962..4404
                     /locus_tag="VE223_00210"
     CDS             2962..4404
                     /locus_tag="VE223_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HZC20044.1"
                     /translation="MGVNELYQALKPICEKICSIVENGNEIFIIAHSDADGIISASII
                     SASLARLGAKCTVRTISDMTLDTIEQMRSENHDFYIITDLGGGMANELFKALNKKWMI
                     IDHHQIPLEEMHEDYTDNILNAWKYSIDGDKEICAGGMSYMVANTLDRKNRDLSSIAT
                     VSAIADRQDQGDKKSLLGVNSEIMKTAQSLGLISVDLDLMFTGRETRPLHEALAYTSF
                     PYIDGLTWNTENCYTIFKNAGVMMKDNDERWRTLSEISQEEKSIILDAIAKFVATSSQ
                     NPSANIIDNLIGYRYTLTNEDQRSQLRDAREFSAMLNACGRIGKAGVGIGICMGDRNL
                     MLAEGEEIVATYRTTLRNYISTIFAEKWRLVDDGESVFVNGEGLLSEDLVGAVASLLS
                     ESPTFSNRLLFVRALAKDGTYKFSSRKCIGCKIELNLGLLIRHCSESIGGIGGGHFAT
                     AGCRIPSRRLEHFLQNLRSSIANERFATAS"
     gene            4379..4642
                     /locus_tag="VE223_00215"
     CDS             4379..4642
                     /locus_tag="VE223_00215"
                     /inference="COORDINATES: protein motif:HMM:NF011470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HZC20045.1"
                     /translation="MRDSQLPLRVITTIEIKFLDKFEMNAIMKALTPDNINFPKGLSM
                     QSFSKDNTLFFEFFCNTEVETLINTVDEVLSHISVAKKVINDD"
     gene            4632..5915
                     /gene="serS"
                     /locus_tag="VE223_00220"
     CDS             4632..5915
                     /gene="serS"
                     /locus_tag="VE223_00220"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HZC20046.1"
                     /translation="MMIDLKLLKENPQVIKEMLKKRNLDFPIDELINLDKKRRELIVQ
                     VQEIKHKKNNLANSIAIKKKNRHDPKAELEEMRIVGRKIVSLEEEKATIELKFRRLIM
                     MLPNIIDKSVPIGNSETDNLVIKREEDGKKRLGFKPKDHIDIATNLDLIDLERASKIS
                     GSRFYFLKNELVMMNQALIHFALDFLSEKGYILAQPPYMIKKNAMEGAVILGDFEDVI
                     YKVEGEDLYMIGTSEHAMASMHMDEILDGKKLPIRYAGISPCFRKEAGAHGKDMKGIF
                     RVHQFEKVEQFVYSRPEYSYKEHDTMLTVTEKFYELLGIPYRIVLLCSAEVGKVSAKT
                     YDIEAWMPGQNAHREIGSCSNCTDYQSRRLSIRFRDKTNEETRLVHTLNSTLVATERT
                     LVTIMENNQTSKGTVEVPDVLQKYMGDMKEISRAI"
     gene            6300..6623
                     /locus_tag="VE223_00225"
     CDS             6300..6623
                     /locus_tag="VE223_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20047.1"
                     /translation="MNRPIIMATATMVILAASAFALQSIQMAKAQYGGTTGGGSLEEQ
                     LKLARAKITNAHQAGAYGSGTPMLGTNINETTIFIVIIVAIFGGVAAAFFIKSRSGAK
                     AKATA"
     gene            6794..7072
                     /locus_tag="VE223_00230"
     CDS             6794..7072
                     /locus_tag="VE223_00230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20048.1"
                     /translation="MSAILSLMAVVSTAFKDLITQIGPAYDPLFYDVMIYIFGTMLFA
                     VFLLSVIAFWLRRKGLGGGSAKEKWTQELEKYFEREQIGLIPDEKHHW"
     gene            complement(7297..7485)
                     /locus_tag="VE223_00235"
     CDS             complement(7297..7485)
                     /locus_tag="VE223_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20049.1"
                     /translation="MVLDGTAMLDCKWIWVEAPCIWEWAQEPDEKILFVQQIKDRTTE
                     CFDDHFPCRKQNCDLQHV"
     gene            complement(8026..8583)
                     /locus_tag="VE223_00240"
     CDS             complement(8026..8583)
                     /locus_tag="VE223_00240"
                     /inference="COORDINATES: protein motif:HMM:NF016619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HZC20050.1"
                     /translation="MINSKTLFLTALAAVTVLSTAFAFLPMAEGHGVQAQLQSRFVKI
                     NDESFSAQTVHTGDTITVKGTLQSLVNRPLRAWLSLFSDSTNAGVRWEFIARDPPGNI
                     FDIPAQASIPYSITAKALEPGIYHVHTQLNIEHIGPGLGPGQTVQVTGPPIFKPVPWG
                     DITYQCIIIGAGLGITFATRPWQVI"
     gene            9155..9718
                     /locus_tag="VE223_00245"
     CDS             9155..9718
                     /locus_tag="VE223_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HZC20051.1"
                     /translation="MAQMPALIPKEVEIQRLKKIYIMVIMLGSIAASVEVDNFVDGSL
                     HQTAIRDSAFTPAHWWLYSHFIALPLGWGFVAMYDRRVPILRGPNNSINTGLKITIIG
                     YLATMFTIGVNELWHFWFVEEIFSVPNHWMFNMGVVVAFMGALAYVVRVYARLVELGA
                     ETPAKNPYVAEMYKLALEGKLYSRSIP"
     gene            9933..10232
                     /locus_tag="VE223_00250"
     CDS             9933..10232
                     /locus_tag="VE223_00250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20052.1"
                     /translation="MTLPKGYGGGGRGGGGAYGSRDDIERMIGRRVENMKGIYILGFA
                     LCWAATAGGVYVGVTVYPWAYPLPSGLYALSVLTVIEALGFFFIMKITGEKTIRA"
BASE COUNT         3491 a         1809 c         2033 g         3171 t
ORIGIN      
        1 gtagcgaagt taaagaatca aactactcta tttgacgaca aaatgactgt tgaaagagta
       61 tattcaacct tagataagat tgcacggacc cttggccccg gttcacagga agccaaatta
      121 agacttgtga gtagcctttt aaacaatgca actcccagag agagcagata tataatgaag
      181 tttgtaatgg gaacattacg acttggtata gcagactatt cggtaatgga tgcattggcg
      241 ttagcattta caggggacaa atctaacagg aatacgctag gaaacgctta taatgtttca
      301 agcgacctag gagcaatagc aaaactatta tctacaacag gtcttgaatc cgtaaaatca
      361 ctccaaataa ctttgtttaa accaattaga ccgatgctgg cagaacgcgc aagtatctct
      421 gaagaagcat taggaaaaat gggcaggaag gcagctgcag aatacaaatt agacggcgaa
      481 agaatacaag tacacaaaaa caaggaaaaa gtagaactct tttctaggag acttgaaaaa
      541 attacagatc actatcctga tgtagcagag gcaataaaat caattagggt agatgaagca
      601 atattagaag cagaggttgt agccattaac accaatactg atgaatttct accatttcag
      661 gagctaatgc atcgccgcag aaaatatggg ataaaactag cagtagaaaa ttatccagta
      721 gttatgaatt ttttcgatgt attatatata gacggagata acaagacttc tttaacttac
      781 attcatcgcc gtaaaatcct tgaaaaaata attaaaggat cacgtaacga aaagttgagg
      841 ttagttcctc aaactattgt cgaaaaatca gagcaaattg acaagtttat ggcatctgct
      901 attgaaagtg gatgcgaagg actaatgata aagcaactta ctagtacata cagagcagga
      961 tctagagcat ctgcgtggct gaaactaaaa cgcgaataca gaagtgatat tgctgataca
     1021 ctagatctag tcataacagg tgcgctttat ggcagaggtc gtagagttgg aagatatggt
     1081 gctcttttgc ttggagcgta tgattctaaa tctgacatat tcagaagtac gtgtaaagtt
     1141 ggaactggtt ttactgatca acttctggaa gaactctaca ataatttaga aaatcacctc
     1201 attacacata ggcatgcaag ggtggatact ggaatggaaa tggatgtatg gtttgaacca
     1261 aaaatcgtaa ttgaaattat tgcatctgaa ataaccttaa gtccttccca cactgcagct
     1321 atgaattcaa taaggccagg atatggactc gcactaaggt ttccaaagtt tacaggcaaa
     1381 ataagatatg ataagaagcc agaagatgct actgacgttg aggaattagt atcactgtat
     1441 aagaaacaaa tgagaacaat aactggtgga aggtaatgac atatgctatc caaaatcgcc
     1501 tgctgcatta ctgaaaattc ttcttatgtg ttaagagaag aagattactt atatttatat
     1561 ccaaaacaca ttggaaagta attttacctt ttcaccttac tattgtgtac ataattcctg
     1621 tgttgccgat aattcttgga tccagaaatt cgccgtttag gggggaatcc accactgaag
     1681 accttgatac caattatctt gtttattctg tcagtcattg gtgctaccga tgcataaggt
     1741 gcattaacag gtccgattat ctcaatcact tttcctatag gctttccgtt tgcatcaact
     1801 aataattcac cattctttgt ttctttgttg tcggttacta atctgatgat cagccttcca
     1861 ctctttgcta aatgcatgac ctctcctctc tcctctaatt tagcaactac cataaatacc
     1921 aatgttctgt caagaatatt tcagttgtcg ttaaacaata ttcttacgtc aattgcctgt
     1981 gaaaaggttt ttaattatca aagaacgtac aagaatattc taatgttatt atcttttaat
     2041 tgctatcgtt gactagtttt ctgtttactt cttttttgta ccattttttc tgcaacgata
     2101 tcaataattg cagttttttt tacatcttct gattttggga gcatcacata tcctgatcta
     2161 acaaaagatc ttctaggata tcttgcctta tcattggtct cttctgtcaa tggattgtaa
     2221 cctattgatt tgacagcatc aatcagttct ataatcgtcg gatcgaaaac cgcgcgatca
     2281 cgttttacct tgcgtccctt gcgttttgac aaatgtttgt taaaataatc aagccataaa
     2341 attatatgct cataatcttt caacttgcat taattaacaa gtcttaaata ttaagattaa
     2401 tagtcaaaag atgataagtt tttaaatcat taaaagttca aagaaatcag tttataataa
     2461 tcaggtaaca tttagatata cataggtctt ccagtatagc acatggcacg aattcatgct
     2521 cacacccatg gtaaatcaca ttctgctcgt ccgacttcta aagacattcc ctcatggata
     2581 acgcacagcc aaggggaggt gtcttcgttg gttgtacaat tatcaaaaga aggtttgaca
     2641 tcgagtgaga tcggtagtag attgcgtgac gaatatgcta taccacttgt aaaaccaatt
     2701 cttggcaaaa aaattaccaa agtatttgat gaaaataata tcaaactaga tatgcctgaa
     2761 gatttaaatc aactagttca aaaggcagta ggacttcaaa ggcatctgag agcccacaat
     2821 agtgaccaca gaaacgtccg ttctttggag ctaattgagg caaagataca cagactttct
     2881 agatattata aacgcattgg gaagcttcaa aagaactgga aatatgcagc agttattgct
     2941 cagctagagt aagagctcag tatgggcgtc aatgagcttt atcaagctct aaaacctatc
     3001 tgcgaaaaga tttgttctat agtggaaaat ggcaatgaga tttttattat cgcgcattcg
     3061 gatgcagatg gtataatttc tgccagcata atttctgcat cattagcaag attaggtgcc
     3121 aaatgtaccg ttcgaactat ttctgatatg actttggaca ccatagagca aatgcggtct
     3181 gaaaaccatg atttctatat aatcaccgat cttggaggag gaatggctaa cgaattattt
     3241 aaggctctta ataagaaatg gatgataatt gaccatcatc agattccatt agaagaaatg
     3301 catgaagatt ataccgataa tatcctaaat gcatggaaat atagtataga tggcgataaa
     3361 gaaatttgtg ctgggggaat gtcatatatg gtagctaata cacttgatag aaaaaatagg
     3421 gatctttcat ctattgctac cgtttctgct atagcagata ggcaagatca aggagataag
     3481 aagtcactgc taggtgtgaa ttcagaaatt atgaaaactg ctcagtcatt gggactcata
     3541 agtgtagatc tagatcttat gtttacagga cgtgagacaa ggccgcttca cgaagctctt
     3601 gcttatacgt catttcccta tatcgacggg ttgacatgga atacagaaaa ctgctataca
     3661 atatttaaaa atgctggagt aatgatgaaa gataatgatg agaggtggcg aaccctatcc
     3721 gaaatttcac aagaagagaa aagcatcatt ttagatgcca ttgctaaatt cgtagcaact
     3781 tcttcacaaa atccatcagc caatataata gacaatctta taggatatag gtatacgcta
     3841 acaaacgaag atcaacgaag ccagcttcgt gatgctagag agttttctgc catgcttaat
     3901 gcatgtggaa ggatcggaaa agctggagta ggcattggaa tttgtatggg ggatagaaac
     3961 ttaatgttgg cggaaggtga agaaatagtg gctacctata gaacaacttt gagaaattac
     4021 atttctacca ttttcgctga aaaatggcgc ttagtagacg acggagaatc tgtttttgtg
     4081 aatggtgagg ggcttttatc tgaagattta gtaggagcag ttgcttcatt attaagtgaa
     4141 tctcccacgt tcagtaatag attacttttt gttagagctc tggccaagga tggtacttat
     4201 aaattttcat caagaaaatg tattggatgt aaaatagaac taaatctagg cttattaata
     4261 cgacactgtt cagaatctat cggtggaatt gggggcggtc actttgcgac agcaggttgt
     4321 agaattccat ctagaagatt agagcacttt ttgcaaaatc ttaggagctc gatagccaat
     4381 gagagattcg caactgcctc ttagagttat cactactata gaaataaagt tcctggataa
     4441 atttgagatg aatgcaatca tgaaggcatt aacaccagat aatattaact ttccaaaagg
     4501 gttgtcaatg caatcatttt caaaagataa tacattattt tttgaatttt tctgcaatac
     4561 tgaggttgaa actctgatca atacagttga tgaggtgtta agccatattt ccgtagcgaa
     4621 gaaagtgatc aatgatgatt gatttaaaac ttttgaaaga aaatccacaa gtaataaaag
     4681 agatgctgaa aaagagaaat ttagactttc caattgatga gctaatcaac cttgataaaa
     4741 aacgccgcga attaatagtc caagtacagg agattaaaca taagaaaaat aacctagcaa
     4801 attcaatagc catcaaaaaa aagaacagac atgatcctaa agcagaatta gaagaaatga
     4861 ggatagttgg aaggaaaatt gtcagtcttg aggaagaaaa agcgaccatc gaattgaagt
     4921 ttcgtcgtct aattatgatg ctgcctaata ttattgacaa atctgtccca attggcaata
     4981 gtgaaaccga caatcttgtt atcaaacgag aggaggatgg taaaaaaaga ctcggtttca
     5041 aacctaaaga ccacatagat attgccacta accttgattt gattgatctt gagagggctt
     5101 caaagatatc aggctcaaga ttttactttc tgaaaaatga actggtaatg atgaaccaag
     5161 ctttgataca ctttgcattg gattttttat cagagaaagg atacattctt gcccaacctc
     5221 cctatatgat taagaaaaat gctatggaag gggccgtgat acttggagat tttgaagatg
     5281 tcatctacaa ggtcgaagga gaggatctgt atatgatagg cacttctgaa catgcaatgg
     5341 cttctatgca tatggatgaa attttagatg gtaagaaatt accaatcaga tatgcaggta
     5401 taagcccatg ttttagaaaa gaagctggtg cacatggtaa ggatatgaaa ggtattttcc
     5461 gagtacatca gttcgaaaag gttgaacaat ttgtatattc acgcccagaa tattcatata
     5521 aggagcatga taccatgtta acagtaacgg agaaatttta tgagttgctt gggatccctt
     5581 accgaatagt actattgtgc tcagcggaag tgggaaaggt ttcagcaaaa acgtatgata
     5641 ttgaggcatg gatgcctggt caaaatgcgc atagggaaat cggatcatgt tcaaactgca
     5701 cagattacca atcgcgtagg ttaagcataa gattcagaga caagaccaat gaggaaactc
     5761 ggttagtcca taccttaaat agcacgcttg tagctactga acgaacctta gtaacaatta
     5821 tggaaaacaa tcagacttca aagggtactg ttgaagttcc agatgttctt caaaaatata
     5881 tgggtgatat gaaagaaatc tcaagagcga tttgacgttg gcatgaataa cagctttgta
     5941 ctgattaaac gtaattagca atatgatttt ggtgtgaata ccttcgtgaa acgagaatac
     6001 caatctatta ttaatatgtt gtattgtgca tactaataaa actacagata atccacaaaa
     6061 ctatggtaca gatagatgat aacaacaatt tgcaaatatg cttattttat tttattatta
     6121 tttttatttt ctaaatagtg ctgggtggta aatatcagaa tacttatgaa aatctgttta
     6181 cttcatgaaa tgatagatac aaagcaacaa tcatttatgc aagaataaca gtataggtca
     6241 tatacatttt tgacccagac acaaaggtta aataattgaa ctcggctgaa tagatcacta
     6301 tgaataggcc aattataatg gctacagcaa caatggttat ccttgcagct tcagcatttg
     6361 cattacaatc tattcagatg gcgaaagctc aatacggcgg cactaccgga ggaggtagtc
     6421 ttgaagagca actaaaatta gcgagggcca aaatcactaa tgcacaccaa gcaggagcat
     6481 acgggtctgg aacaccaatg cttggaacta acattaacga aacaactatc tttatcgtta
     6541 tcatagtagc aatatttggc ggtgttgcag cagcgttctt tataaagagc agaagtggcg
     6601 caaaggcaaa agcaaccgct taaagctgcc tattttttta tttagcaaga aattttaact
     6661 ctaacttcaa aattacaatg tttctcattt catttaccaa ggtggtcgtg aacttgaagg
     6721 agaacgtgga atagtctaga ttgttttaga ccaaaatgta tatatcatag aattctactt
     6781 gcagtatatg ataatgagcg ctatcctgag ccttatggca gtggttagta ccgcattcaa
     6841 ggatctgatt acacagattg gacctgcata tgacccacta ttctatgatg taatgatata
     6901 catcttcggc accatgctgt ttgcagtgtt cttgttaagt gtcattgcct tttggttaag
     6961 aagaaaaggt cttggcggtg gttctgcaaa agagaaatgg acacaagaac ttgaaaagta
     7021 ctttgaacgt gagcaaatag gtctaattcc ggatgaaaaa caccattggt aaatcatagc
     7081 aggcattact aactgaaaaa tccaaacgaa acccattact tattttcttt gttttttatc
     7141 tggataagac attactacgg atcaaatgat aataaacaat aacttccagg ttgaaagaag
     7201 gactcttaaa ttaacctgcc tcatattatt aggaatgtaa tgaattgaat tctatctgaa
     7261 ctcgcgtaaa tacagtacta acaatttcag ccagttctaa acatgctgta ggtcacaatt
     7321 ctgtttccta cacggaaaat gatcgtcaaa acattctgtt gttctatctt ttatctgttg
     7381 tacaaataga atcttttcat caggttcttg agcccattcc catatacatg gtgcttcaac
     7441 ccaaatccat ttacaatcaa gcatcgctgt accatctaac accatctgtg aatatgggtt
     7501 ttctgtcgta tctattcctc atatgtataa agaatccata ataaactaaa attgttcttt
     7561 cacttgaaag atgtatcatc aaacatctgt ttaggtcagg ttcgtaggct atccataacc
     7621 ataaatcatg accatcttct attctcaata acgtttagtc aacaaataat atattagctg
     7681 actttatatt tttctactac aagtctatct atctatacaa tcagaatatc gctgaaccca
     7741 cttcaaattg ctacattgac ctcttctaat tgttgttatt gattctaaac gccaatctaa
     7801 aggatctgga actaaaatat agatataaac cataactgat tatagctaga tgtgtcctat
     7861 agcattccat atgttgaaca aaacttaact tatatcccaa taagttaaga gctaaaagaa
     7921 tttataaact gtttttatag tatccaagaa gcgactgcga tcttcttcaa tatgacaata
     7981 tagtaaggct aaaattaaaa gaaaaaagag ttgggttgac tttttctaaa tgacttgcca
     8041 cggtcttgtt gcaaatgtta ttccaaggcc tgctccgatg atgatacact gatatgttat
     8101 atctccccat gggaccggtt tgaagatcgg tgggccagtt acttggacag tttggcccgg
     8161 accaaggcct ggaccaatgt gctctatatt aagttgtgtg tgcacgtgat aaatgcctgg
     8221 ttctagcgcc ttcgcagtaa tggaatatgg tattgatgct tgagcgggta tatcaaatat
     8281 atttcctggg ggatcccttg cgataaattc ccatctgact cctgcattag ttgagtcgct
     8341 aaatagtgac agccatgctc ttagaggcct attgactagg ctctgtagtg tgcccttgac
     8401 tgttattgta tcgccggtgt gaacagtttg agcagaaaag gattcgtcat ttattttgac
     8461 aaacctactt tgaagctgcg cttgtacccc atgcccttct gccattggta agaaagcaaa
     8521 tgcggtagag agcaccgtaa ctgctgcaag agccgtaaga aataacgtct tgctatttat
     8581 catattgtta atctacccat aacactagaa acaaagatat atattttgct gagaggaccg
     8641 atagctaaat ttggcaccta gatagatatc ttaataattt gtatatattg taaagctatc
     8701 agatttagga aattcatttt aaatctactt actttaaata cgttaaacta ataggaagaa
     8761 gaacaggtca gctcacagtc attatgatta tagttaagcg gtgttcgtgg aatggcttat
     8821 catttgttac tacttctgat caggtaactt ctatatctat agtaaatcaa cattctatta
     8881 tcatcgatat tattattaat atccgtcctc ttgtttcgtc tttgtcaatt ataactgtaa
     8941 tcaattatga atcgatatgt tctagcacgt acatcaccaa tgataatcat caatgataat
     9001 cagaatctcc tctattgttc ttataacatg atctatattt ggtcccaaat ttcagtacaa
     9061 ttttcataaa atattatata tattttatta tatggattgc aaatgcgtat gctatactaa
     9121 tatagctcct tgtcgaagtg attttgaata gcatatggca caaatgccag cactaatacc
     9181 aaaggaagta gaaatccaac ggctaaagaa gatctatatc atggtcataa tgctaggttc
     9241 aattgcagca tcagtagagg tagataactt tgttgatgga tcattgcatc aaacagctat
     9301 tcgagatagt gcatttactc cagcacactg gtggttatac agccacttta tagccctccc
     9361 actaggatgg ggatttgtgg caatgtatga cagaagagta ccaatcctta gaggccccaa
     9421 taactccata aacactggtc taaagataac tattattggt tatctggcaa ccatgttcac
     9481 aattggagtc aacgagctgt ggcacttttg gtttgtggag gaaatatttt cagtccccaa
     9541 ccactggatg tttaacatgg gagtcgtagt ggctttcatg ggtgctcttg cgtacgtagt
     9601 aagggtatat gcacgtctgg tagaactagg agcagaaaca ccagcaaaga acccctatgt
     9661 agctgaaatg tacaaactag ctctagaagg caagttgtat agcagatcta ttccataagg
     9721 cagcaacaag agtgatacct caaaattgac ctaatcatat aaggccacca ttttttattt
     9781 tttctttttt cttgcatttt aagaatattc ttgtacctct aactgaagaa cagatagatt
     9841 gatggtaaac tttgagtcag ttaaattagt cccacgggat tggctggact taacagcaaa
     9901 atttaaaagt gcatattatg attgtatact taatgacttt acctaaagga tatggtggcg
     9961 gtggacgtgg aggcggcggt gcttatggaa gccgagacga tattgaacgg atgattggcc
    10021 gcagggttga aaacatgaaa ggtatttaca tattaggctt cgcattatgt tgggcagcaa
    10081 ctgcaggtgg agtttatgta ggtgtaacag tctatccatg ggcatacccg ttgccaagtg
    10141 gcctttacgc gctttctgtg cttacagtaa ttgaagcatt gggtttcttc ttcattatga
    10201 agatcacagg cgaaaaaaca attcgtgcgt aatcgtctta ttttctattt ttttgcatag
    10261 tttatttctt aacattcatg tgtcacatag tataacagaa tattatgagc taaattacaa
    10321 ggatgcttat gaaatagcat gctcagttac gctcgacatt cagaatgatt aactggctct
    10381 atgcgttaag ttggaatttt tgaaataatc ggtgtttatc acaattgcct ttgtgctctt
    10441 gtcggacaat aacgcatgag actaatagtt gcttattttg ttaaatccaa tccaattcca
    10501 agta
//
LOCUS       DASQSJ010000010         5090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_239596, whole genome shotgun sequence.
ACCESSION   DASQSJ010000010 DASQSJ010000000
VERSION     DASQSJ010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5090
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_239596"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..3211
                     /gene="carB"
                     /locus_tag="VE223_00255"
                     /pseudo
     CDS             41..3211
                     /gene="carB"
                     /locus_tag="VE223_00255"
                     /inference="COORDINATES: protein motif:HMM:NF009455.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) large subunit"
     gene            complement(3236..4009)
                     /locus_tag="VE223_00260"
     CDS             complement(3236..4009)
                     /locus_tag="VE223_00260"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HZC20053.1"
                     /translation="MVNVCPLYPHPALLLDGVWNGKRHKYIAISDLHIGFESAICTKG
                     ITIDSNLLLDEMLNEIFDLVNTYHVDGVVLLGDLKNSIGSITKNEWEKIPKFLKLLSD
                     SLDVYLVPGNHDGNIRFLIPQNVQVVSNKGMFLNNDTLLVHGHTMPLKLRPTTKRIVM
                     GHIHPIFQKSGSIIGGQRVWLYLKVKREAIFLSAKGILDIIVLPTFNRYLFAERHSIK
                     SVSPILNKAIKYNAIERSMVVTLNGSIIEDTTAVLGSVI"
     gene            4108..4419
                     /locus_tag="VE223_00265"
     CDS             4108..4419
                     /locus_tag="VE223_00265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20054.1"
                     /translation="MKRRERTISSRAVKLHVFQPSGRKLWTVVGKDNEHWTDPDLEFC
                     SCKNYYYRTLSNLEACYHLKTVKQANENNEFVSITFDDSEYNGFVKALLIDNARKLLD
                     C"
     gene            complement(4426..4917)
                     /locus_tag="VE223_00270"
     CDS             complement(4426..4917)
                     /locus_tag="VE223_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20055.1"
                     /translation="METEHRMQSQAKRGLASANEETRLRVARKGGISPHHIRGLAAAN
                     PQTRSRVAKAGGEARAQDKEGLRDAGRKGGETVKAEYGVEFYQSIGEKGGETVKEKYG
                     TDFYREIGEKGGGIVKEKYGIRFYSEIGKLGGETVKQERGPGFYSVIGRKGGETKAED
                     TTT"
BASE COUNT         1636 a          948 c         1009 g         1497 t
ORIGIN      
        1 aagcaggcga aagtcttagt gtggccgcca atttgactac tccggttcac aatgcttaaa
       61 ggcgcttaat gaagatgaga tcagaactgt tctaataaat ccaaacattg caactattca
      121 aacagacact gcgtttgcag agaaagtata tcttgtaccc attaatccca gctatgttga
      181 aaaagtgatc gaagctgaaa gaccagactc tataatgtta gcatttggcg gacaaactgc
      241 gctaaattgt ggtgtagcac tacacaaatg tgggatctta gaaaaatatg gaatcagagt
      301 tttaggcact caaataaggg gaatagaaat tacggaagat agacttttat tcaaagaagc
      361 gatgaaaaaa agcaatatac ctgttttgca gagtgctcca gcatactcac tggaagaagc
      421 tctagaaatt gctaaagaaa ttgtctatcc tgttattgtc agagtagcat atactctagg
      481 aggaagagga ggaggtgtag cgtataacga atatgaatta caagaaattg ttcaaagagg
      541 ccttactctt agcctagttc atcaggtatt gatagaaaaa tatgttggtc attggaaaca
      601 aattgaatat gaagttatgc gcgattgcag agggaatggt attactgttt gtaacatgga
      661 aaatgttctc gccatgcgtg tacatactgg tgataatata gtagtcgcac cttcgcagac
      721 actcaacaat tttgaatatc atatgttgcg ttctgctgct ctgcgagcta cagatcattg
      781 taatattatt ggagaatgca acattcagtt tggtttagat ccgctgtcag atgaatattg
      841 cgctattgaa atcaacgcga gactctcaag gtcatctgca cttgcaagta aggcgactgg
      901 gtatccgctt gcatatatgg ccgcaaagat aagtcttgga tactcgctga ccgaattaat
      961 caaccgaatt acgaaggtca caactgcaaa ctttgaaccg tcgttagatt atgtcgttct
     1021 aaaaatgcct agatgggatt ttcaaaagtt tgaacttgtg aagcggaaat taggtagtaa
     1081 tatgaaatcc gtaggcgaag taatggcaat aggtaggaac tttgaagagg ttatacagaa
     1141 ggcaattagg atgtgtgaaa ttggcaaaga tggcttagta gctaataatg ttgagtctaa
     1201 taatatcgtg gatgaagaca ttgaaagaat agaggaggcg ctgttgcatc ctaatgatga
     1261 aataattttt accatagtca aagcaattca cgcaggaatg tctatcaaac taataagcca
     1321 attgtcctct attgatccat ggttcttggc aagaataaag aacatagtag atatggaata
     1381 caggctacga aattccaatc tcgaagtaga agtaatcaga gaagctaagc gaattggatt
     1441 ttctgataaa cagattggaa gatgtatgga tctcgacgaa ctcaaattaa ggacttttag
     1501 gaaaagattt ggtatcaatc cggtggttaa acaaattgat actctggcag ccgaatggcc
     1561 agcaaaaaca aactatttgt atctgaccta tggtggtcaa actgacgata tagaacttgg
     1621 gcgaaagaaa gaaaaaagtg tagcagttat tggagctggt ccgtacagga ttggcagcag
     1681 cgtggaattt gattggggga cagtcaatat ggtatgggga ttgaaagaaa atgggattaa
     1741 agaggtttct ataattaact gtaaccctga aactgtttct actgattatg atgttcctga
     1801 caggttgtat tttgaagagt taacattcga aagagtcatg gatatttatg aaaaggaaaa
     1861 tcccataggg atcgtgacct gtatgggcgg acagactgca aacaacctaa ccccaaagct
     1921 tgccagagct ggtgtgaaca tcataggaac cagtagcgac gatgtcgaca gagcagaaga
     1981 cagagcaaaa tttgggcacc tattagattc actaggaata aagcaacctg cctggaaaaa
     2041 atttaccgac atttcagaag ctacagaatt cgcggataca gttaaatatc ctgttctggt
     2101 tagaccctct tacgttctaa gtggcgcagc catgaaggtc gtttgggctg aacaacaatt
     2161 ggaacgcttc ttgacagaag caacaaatgt tagtccagat catcctgtag ttataagcaa
     2221 gttcttgcaa gaagcagcgg aagtcgaagt tgatgctgta gcatcagcga aagaagttac
     2281 aataggttcc cttatcgaac atattgataa cgcaggtatt cattctggcg atgccatcat
     2341 gtgtattcct ccatggaggc tcgatagaag aaccatcgaa accataatag attactcaat
     2401 caaaattgga aaagccctta aaataaacgg accttttaat atacagtacc tcgttaagga
     2461 tgacgaagta tcagttattg aggccaacgt cagagcatcc aggtcaatgc cgtttgtttc
     2521 aaagtttttg gggctaaatc tgattaaact tgccgcaaga actatgacag ataaaccact
     2581 tccaaagatt tcaaatgatt tatggctgag gaggacagga tttggcatta aagtccctca
     2641 attttccttt atgcaactcg aaggagctga tatcgtcctt agtgtagaaa tgcaatcaac
     2701 tggtgaggtt gcttgcttcg gtgatagctt ttatgatgct ttgtccaaag cttatatagc
     2761 tgcaggatac tcacttcctt tatcgggctc tgccttagtt actattggag ggcaaaaaaa
     2821 caaagagagg ttattaccat taatttcact aatttcttca atgggataca acatcatggc
     2881 gaccgaacat acggcggaat tcatggtaaa aaacaacttc ggtaatatca tgcaagtcta
     2941 taaaatcagc gaacctcttc gcaaacccaa catagcagat ttgctttttg aacacaagat
     3001 tgattttatt ataaatattc cttctactgc tacaatcgaa aaatatgtcg gaatgttgta
     3061 cgatgaatac ttgattagaa gaaaggcagt agaaatgggt attccagtcc taacaacgat
     3121 ggaagcagcc tcttcttttg ttaaaacagt tgagtggtta aggagtaata ttccgacatt
     3181 aaacccactt agaagttata ttaagtttta agaataagaa ctttgtcaca tgttttcata
     3241 taacactacc caataccgct gttgtatctt caataattga gccatttagt gttacaacca
     3301 tagacctttc aatagcatta tactttatag ctttattgag tatcggagaa acagatttta
     3361 tagaatgtct ttcagcaaat agatacctat taaaagtggg gagaactata atatccagta
     3421 ttcccttagc cgaaaggaag atcgcttccc tttttacttt aagatacagc catactcttt
     3481 gtcctccaat aatactacca gatttttgaa aaattggatg aatgtgaccc atcacaatcc
     3541 tttttgttgt tggcctaagc ttcaaaggca tagtgtgacc atgaaccagc aatgtatcgt
     3601 tatttagaaa cattccttta ttacttacca cttggacatt ctgaggaatc aaaaaacgaa
     3661 tatttccatc atgattacca ggaaccaggt agacgtccaa agaatcagaa agtaatttga
     3721 ggaattttgg gatcttttcc cactcattct tggttataga tccaattgaa ttttttaaat
     3781 ccccaagtaa taccacccca tcaacatgat atgtatttac aagatcaaat atttcattga
     3841 gcatttcgtc aagtaataag tttgaatcta ttgtaattcc ttttgtgcag attgcggact
     3901 caaaaccaat atgcaaatcg gatattgcaa tatatttatg tcgttttccg ttccacaccc
     3961 catctaaaag aagggcagga tgaggataca ggggacaaac attaaccaca gttatactat
     4021 ccggattaca atcaaatata tcttcatata ttgcaacaat ctaagcaagt ataaagatat
     4081 tattgtatca caaaagtgaa attagctatg aagcgtagag aaagaacaat aagctctcgt
     4141 gccgtgaaac tccatgtttt tcaaccaagc ggaaggaagc tttggactgt tgtaggaaaa
     4201 gacaatgaac attggaccga ccctgactta gaattttgct cctgcaaaaa ttattattat
     4261 agaacacttt caaatcttga agcatgctat catttgaaaa ctgttaaaca agcaaatgag
     4321 aataatgaat tcgtatcaat aacatttgat gactctgaat acaatgggtt tgttaaagca
     4381 ttattgattg ataatgcaag aaagttactt gattgctgaa acatctcatg tagtcgtatc
     4441 ttctgctttg gtttcgcctc ccttcctacc tattacactg tagaatcctg ggcctcgctc
     4501 ctgctttact gtttcaccac caagctttcc tatttcactg tagaacctaa ttccatattt
     4561 ttccttgact atacctccac ccttttctcc gatttcacga taaaaatccg taccatactt
     4621 ctctttcact gtttcaccac ctttttctcc tatcgattga taaaattcaa caccatattc
     4681 tgctttcact gtttcaccac ctttccttcc agcgtctctg agcccttctt tatcttgtgc
     4741 tctagcctcc cctccagctt ttgcgactct cgatctcgtt tgaggatttg cagccgcaag
     4801 tcctcttatg tggtgcggtg aaatgccccc ctttcgcgcc actctcaatc ttgtttcttc
     4861 gttcgctgag gccaatcctc tttttgcctg tgattgcatt ctatgctccg tttccataca
     4921 agttaattct ttatatcaca taaaagggga ctagaagaaa gctagagaac ctttctattc
     4981 cgacattttt aatattgtca caggttagtg atctggtgaa aaataataat gttttgataa
     5041 taggctcagg cggaagggaa catgctcttg gatggaaact tagacaaagc
//
LOCUS       DASQSJ010000011         2081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_161046, whole genome shotgun sequence.
ACCESSION   DASQSJ010000011 DASQSJ010000000
VERSION     DASQSJ010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_161046"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VE223_00275"
     CDS             complement(<1..294)
                     /locus_tag="VE223_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20056.1"
                     /translation="MLHYSQSVRVNLKDRTRLLEENALTICNYIIAFKHEVNPRPSYI
                     KYIIQFLSELSKAVGVEKRLEDFTKDDILLYLDSYRKSENDDSMHRWIGSYNIK"
     gene            complement(237..440)
                     /locus_tag="VE223_00280"
     CDS             complement(237..440)
                     /locus_tag="VE223_00280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20057.1"
                     /translation="MYNDGDSSGSNAGNSRSRTGRRSNKSLETALAPIDTNGELDRKI
                     TLATECFTTAKASELILKIEPGY"
     gene            546..1334
                     /locus_tag="VE223_00285"
     CDS             546..1334
                     /locus_tag="VE223_00285"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HZC20058.1"
                     /translation="MIVTVDANWLVSRLDDPNIVIIDGRGIMPYRFGHIKNAVPLGVE
                     HVISIADNGANLAIDAQIAEKIFTKLDIDDSKEVIAYGEYPDPSVARIIWTLMYHGHP
                     NVKLLDIGYSQWQKAGLPITKQIQKTVQQPKEVIANFVAKTNPALRADAQMIKEKQND
                     PNVVIVDARTPQEHIQARIPGSILHNWEEGLGDFGKMLEDKDKLQSKFESKGITKDKE
                     VICYCHSGMRASHTYLQLKYAGFDNVRMYDGSIIDWARHGYPLR"
     gene            1650..>2081
                     /locus_tag="VE223_00290"
     CDS             1650..>2081
                     /locus_tag="VE223_00290"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HZC20059.1"
                     /translation="MIRMQGPANSCFDDIITRSKKINKKYHFQSKYTIRTTSLFLISA
                     LTLTVSLLPPTYAQQQSSTLYDPATSPIKHIVVIMQENRSFDNYFGTYPGANGIPKET
                     ACMPLSPGHSAMGCVKPFPSNSAVSEDLPHGYQSSIAAYDNG"
BASE COUNT          654 a          376 c          397 g          654 t
ORIGIN      
        1 tttgatgttg tagctgccga tccacctatg catagagtcg tcattctctg atttcctata
       61 actatcaagg tatagcagga tatcatcttt tgtaaagtct tcaagtctct tttctacccc
      121 gacagctttt gatagctctg ataagaattg aataatgtat tttatatatg aaggccttgg
      181 gttaacttcg tgtttaaacg caattatgta gttacaaatt gtaagtgcgt tttcttctaa
      241 taacctggtt ctatctttaa gattaactcg gacgctttgg ctgtagtgaa gcattcggtt
      301 gctaaagtaa tctttctgtc taattcaccg ttggtgtcga tcggcgctaa tgctgtttct
      361 aatgatttgt ttgagcgcct accagttctg cttctactat taccagcatt actgccacta
      421 ctatctccat cgttgtacat attttatatt cgctttaagt atacagattg ttataatgct
      481 ttgcaagaga aggcgttaaa gaaatataat gcgttccgac acaatgataa actgatctct
      541 agtaaatgat agtaactgta gatgcaaatt ggcttgtctc tcgtctggat gatcctaaca
      601 tagtcattat cgatggaaga ggaataatgc cttatagatt tggacacatt aaaaacgctg
      661 tacctcttgg tgttgagcat gtcatttcca tcgcggataa tggggctaac ttggccatag
      721 atgcacagat agctgaaaag atcttcacca aacttgatat cgatgattca aaggaggtta
      781 tagcatatgg cgaatatcct gatccttctg tggcaaggat aatttggaca ttgatgtatc
      841 atggacatcc aaatgtaaaa cttctagaca taggatatag ccagtggcag aaagcaggat
      901 taccaattac taaacagatt caaaaaacag tacaacaacc aaaagaggtt attgctaatt
      961 ttgttgcaaa aacaaatcct gcacttagag cagacgctca gatgataaaa gaaaagcaaa
     1021 atgatcctaa cgtggtaatt gttgatgcta gaacacctca agaacacatt caagcaagaa
     1081 ttcccggatc aatattgcac aattgggaag aaggattagg tgactttggc aagatgcttg
     1141 aagataaaga taaattgcaa agtaaatttg aaagcaaagg aatcaccaaa gacaaggaag
     1201 ttatatgtta ttgtcactct ggcatgaggg catctcatac atatctgcaa ctaaaatacg
     1261 ctggctttga taatgtcaga atgtatgacg gctccatcat tgattgggcg cggcatggat
     1321 atcctctgag gtaaggacca aatttttatc cgctttttat ttaggtaggc agtctatatg
     1381 atatatttgc agattgtact gatagatagc ggcactttaa atacgataag atacttgttt
     1441 agcttagccc gttgggtacg ttcggtctta caatagaggg tatttagtct tgttcattat
     1501 ggatactctc tttcaaaatt tggctatatg tttgttgttt tttgtataga agaggaattt
     1561 attaaagaga agcagctgct gatggtttta gggtatctct tcacaactca ttcaaggatc
     1621 cgtttaaatt cttgagtcat ttgaaataaa tgataagaat gcaaggacca gcaaattctt
     1681 gctttgatga tataataaca agatctaaaa aaataaataa gaaatatcac tttcaatcta
     1741 aatacacaat tagaacaact tcgctatttt tgatatccgc attaactttg accgtctctc
     1801 ttctgccacc aacttatgcg caacaacaga gcagcactct ttacgatcct gctacaagtc
     1861 ccataaaaca catagtagtg atcatgcaag aaaatagaag ttttgataac tactttggta
     1921 cttatcctgg cgctaatgga atacctaaag aaacagcatg tatgcctcta tctcctggcc
     1981 attcagccat gggttgtgta aaaccttttc cttcaaatag cgctgtctcc gaagatctgc
     2041 cacatggtta tcaatcatca atagcagcat atgataatgg c
//
LOCUS       DASQSJ010000012         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_479709, whole genome shotgun sequence.
ACCESSION   DASQSJ010000012 DASQSJ010000000
VERSION     DASQSJ010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479709"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(358..1725)
                     /locus_tag="VE223_00295"
     CDS             complement(358..1725)
                     /locus_tag="VE223_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HZC20060.1"
                     /translation="MQFIEYHRHYESKTRKSKRWYSRSAKIFAGGVNHNIRFFEPYPF
                     VTNAAKGRYLFDVDGNRYTDYWMGHWALILGHSPKPVVKALSEQIKYGILYGTVNDVS
                     VELGELIRKLMPRAENIRFSSTGSEATMYAVRLARAKTGRRVIAKVIGGWHGFNTTLM
                     QTVNHPFEAQEGPGLVEDESQFIESIPFNDLDRSLKVLETVRDDLACIIIEPLLGSGG
                     CIPPVDGYLQGLQEFAAKNDSLFILDEIVTGFRLSLRGAMSLYKLEPDIFTIGKIVGG
                     GMPIGAVCGKKEIMALADPVLKKEKESRCAIGGGTFSANPMTMNAGLATLNYLKENNN
                     RIYTKINKLGSDVRSGIAKIFSEAKVDVRVTGIGSLYLMHFLNGGVNNISTATDVAMS
                     NKELLRRYHMALIAKHGIFFLPLKMGAFSDAHDDRDVKNLLAATRSIVESGILHDKPS
                     LTKEI"
BASE COUNT          598 a          426 c          390 g          694 t
ORIGIN      
        1 caattctaag tggtttgaaa aggctgagtg ttcttcttct cacttctatg aactcagcaa
       61 gtaaatcccc aattccaccg ctcagtattt gagccatatt ttagaaatag gacttaatga
      121 aacttataaa ccaatagatt agttcaaaga tacggtacta tactatacga tatgatatga
      181 tgtctcgagc tgagttcatc agaaaaatcg cattcatatc tattctagta tataatattt
      241 aaggaaatgc ttttgcacta taataacaat ataataataa caacaataaa ccgcctttta
      301 aaattggcga tcaaataatt tgatagggac gctaaactag catgcataaa gacttggtca
      361 tatctccttt gtgagagaag gtttatcatg taaaattccg gactccacta ttgatcgagt
      421 ggcagctagc aggtttttga catcacgatc gtcatgggca tctgaaaatg cacccatctt
      481 caatggtagg aagaatattc cgtgcttggc tatcaatgcc atatggtacc ttctgagaag
      541 ttctttattt gacatggcta catctgtggc tgtgctaatg ttgttgacgc ctccatttag
      601 aaaatgcatt aggtaaagcg agccgatacc ggtaacccga acatccactt tcgcttcaga
      661 gaatatcttt gcaattccac ttctgacatc acttccgagt ttgttgattt tggtataaat
      721 tctgttattg ttttctttta ggtaattgag ggtagcaagc cctgcattca tcgtcattgg
      781 attggcagag aatgttccgc cacctattgc acagcgtgat tctttttcct tctttaagac
      841 cggatcagca agagccatta tttctttttt gccacaaaca gctccaattg gcataccccc
      901 acctacaatt ttgcctatcg taaagatgtc cggctcaagc ttatagagac tcattgcacc
      961 tctgagtgag agcctgaatc cagttacaat ttcgtctagt ataaacaagc tatcattttt
     1021 agccgcaaat tcttgcaacc cttgcaagta accgtctacg ggtgggatac atcctccact
     1081 gccaaggagg ggctcaataa taatacacgc caagtcgtct ctgacagttt caagaacttt
     1141 aagggatcta tctaaatcat tgaacggtat tgattctata aattgtgatt catcttccac
     1201 aaggccgggt ccttcttgag cctcaaatgg atgattcaca gtttgcatta atgttgtatt
     1261 aaatccatgc catcctccaa taactttggc tattactctt ctgccagttt ttgcccttgc
     1321 taatcgcaca gcatacatgg tggcctctga gcctgtactg gaaaaacgta tattttctgc
     1381 tctgggcata agctttcgga taagctctcc aagttctaca cttacatcgt taactgtgcc
     1441 atacaagatt ccatacttaa tttgctcaga taaagccttg acgactggct ttggagaatg
     1501 gccaagaatt agggcccaat ggcccatcca gtagtcagta tatctgttac catcaacgtc
     1561 aaagagatac ctgccttttg cggcatttgt aacaaatggg taaggttcaa aaaatcggat
     1621 gttatggtta actccgccgg caaatatctt tgcagatctc gagtaccatc gtttggattt
     1681 gcgggttttg ctttcataat gtctatgata ttctataaat tgcatctgtt aatgattcca
     1741 ttctgttaat cttttatttg tttgtaggtc tgaactttga ggaggactcc tttgcataaa
     1801 acctcttatt attatggaat attatttttt atttaaaagc aataatactg cagcaaaact
     1861 tcctctttca gtcttcttgc tagagtcttt tagctagaca gtccattgct aattgatatt
     1921 ttagattctc tacatacctg ataatttgtg ctttggcatc tttttggagt agtatcgatc
     1981 tctgggagca tggattcagg ttaacgggag tttgtaatgc tctggaagat agatagtact
     2041 aatataacaa actatttatt agaaacctat ctgcacagag aataaagtca gtattgttga
     2101 tttgacgg
//
LOCUS       DASQSJ010000013         5450 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_279586, whole genome shotgun sequence.
ACCESSION   DASQSJ010000013 DASQSJ010000000
VERSION     DASQSJ010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5450
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_279586"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..1032)
                     /locus_tag="VE223_00300"
     CDS             complement(19..1032)
                     /locus_tag="VE223_00300"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HZC20061.1"
                     /translation="MTKYARRLQKIGSSMLVSLPSEWIKNHNLKKGNMVLIEINRDNS
                     ISLFSSDVGNEDMKEVTIPYTPASIDSLVNQIYGAYLLGYNIIRIKGKSQISFDNREL
                     IKHIMQKLVGLEIIDEDGFNIISQFLLDANALNAEKILRRMSSIIAGMYRDTLEGLRS
                     KENGIGKLIMSRDDEVDRQYFLLVRLIRSAMVDQKLAGKLNLSNIDILDYRIAANQLE
                     SAGDYITEFASAVPDIFHTKLIDMITNLSILIEKMHERSVVAFTTKNRAESIEVVKMY
                     NKFNDLIKSIKELSAKAEPRNSELTVAIINSIYSMDKIARCWVDVADLVKPLYLTSPL
                     MNV"
     gene            1102..2025
                     /locus_tag="VE223_00305"
     CDS             1102..2025
                     /locus_tag="VE223_00305"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20062.1"
                     /translation="MTSVVVEPIAVARAFSPGHITGFVVRKSATTRNNNYLYVGSKGA
                     GFSIDRGITTTVEIYEHDLVNYRISINGLKVENAEVSKWVLEKYLKLIDKHYYINIEH
                     EINIPIGFGLGSSGAAALSLSYALNEAFNTGLSMKEAAQVAHNAEIACKTGLGTVIAE
                     FTGGFEMRIDPGAPGIGTVEKIELKNHKAVILCISPISTKSFLRNHIYLADGLGEKML
                     KRLRASREIDDFLEMSYYFAHHLGLTEGRCKLPIQRLRSQGFECGVALFGETLFTIVQ
                     SDRVNEVKECLKGFKGDLIVCNIDNTGARSV"
     gene            2037..2777
                     /locus_tag="VE223_00310"
     CDS             2037..2777
                     /locus_tag="VE223_00310"
                     /EC_number="6.3.2.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphopantoate--beta-alanine ligase"
                     /protein_id="HZC20063.1"
                     /translation="MNIPSNHPRAKSLYIRELLVTGFRNGLVAPEGLIAHGRGEAFDY
                     LLGEHTTKAAHDAANAASSMLLLSKYPVISVNGNVAALCAKEIIELSHVTGAAIEVNL
                     FYRTTEREMAIEKELKKNKAKTILGIGSEASMRIPELQSERRRVDPNGIYKADTLLVP
                     LEDGDRAEALVNMGKTVITIDLNPLSRTAKVAHITIVDNIIRAIPEMIVAAKQLKEKN
                     ASVMKRIVEEFDNKTNLAKSLKNIRGDI"
     gene            2778..3695
                     /gene="panB"
                     /locus_tag="VE223_00315"
     CDS             2778..3695
                     /gene="panB"
                     /locus_tag="VE223_00315"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HZC20064.1"
                     /translation="MQYEETNNGRKARKKIRVNDVIMMKQKKEKVSVLTAYDYSTASI
                     CDKSNVDILLVGDSAGMIMLGYPNTIPVSMEEMLLFCKAVSRGTKRAMVIADMPFGSY
                     QPNVNNAVKNAIQFIKAGCDAVKLEGADEIIHTIRDIVNAGVPVMGHIGLKPQTCTLW
                     EGYKLQGNTKDSALKLIADAKALEQAGVFSIVLEMVASEVAEVISKNTTIPIIGIGSG
                     CGCDGQVLVLHDMLGIYEEIKPKFVKRYAELSKLILEVILQYTNDVKSSKFPEEQNTF
                     HMNPTELKNLNKALKEKIDFKNECDKKSK"
     gene            3670..5004
                     /gene="coaBC"
                     /locus_tag="VE223_00320"
     CDS             3670..5004
                     /gene="coaBC"
                     /locus_tag="VE223_00320"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HZC20065.1"
                     /translation="MNVIKKANSRRTIVHPSKDITGLEGKDLAGKKIVLCITGSIAAY
                     KAIDLARLLMRHGADVHPVMSEMVASTLLTPDMMKWTTGNHVVTKLTGNLEHIFLADY
                     NMSDLILVYPCTANTIGKVANGIDDTPVTSILSVALGSRISIMIAPAMHKSMYSNPFI
                     KENICRLKNQGIEFLEPLISEGKAKVARSDQVLNSILNKFKETRINGVLLLAGKNVLV
                     TAGSTIEYIDPIRVITNLSSGKMGNAIAEEAAKRGANVTIVCGHTTYDSFSSLTNNII
                     KVNTSDEMYNTVMTELSSKKYDIVILAAAVADFKPEEKKFTKKIDSRKDKLLLPLSST
                     KKIIDKVKQTSKTDTLLVAFKAEYRVSNSHIVNRAYEKLKECNGDLIVANDVGREGSE
                     ISSDNNEVFIVDRQKKVIHLPLQNKRDIARKLLDIIEKYLDNKEIKDNNSIN"
     gene            complement(5245..>5450)
                     /locus_tag="VE223_00325"
     CDS             complement(5245..>5450)
                     /locus_tag="VE223_00325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20066.1"
                     /translation="KKPIGIASVEGAPCFSCTFQHLCSSEDETGQYSPEKCTWLEEWA
                     IDGLNRIITPSQPTTENMEKVEV"
BASE COUNT         1858 a          926 c         1023 g         1643 t
ORIGIN      
        1 tttcctgacc gtgtaaactt acacgttcat caatggagaa gtcaaatata atggtttaac
       61 caaatcagct acatcgaccc agcatcttgc aattttatcc attgaataaa ttgaattaat
      121 aattgcaacg gttaattctg aattccgtgg ttctgccttt gctgacagtt cctttattga
      181 ttttatgaga tcattaaatt tattatacat ttttacaact tcgatagatt ctgctctatt
      241 ctttgtagta aaagcgacta cagacctttc atgcatcttt tcaattaata tactaagatt
      301 ggtgatcata tcaatgagtt ttgtatgaaa aatatcaggc actgctgatg cgaattccgt
      361 aatataatca ccagcacttt caagttggtt agcagcaatt ctataatcga gaatgtcaat
      421 gttgctcaaa ttaagtttac ctgccagttt ctgatccacc atggcacttc gtatcaacct
      481 tacaagcaaa aagtattgcc gatctacttc atcatccctg ctcattatca attttccaat
      541 accattttcc ttgcttcgca gcccctccag tgtatcccta tacattcctg ctataattga
      601 gctcattcgt cttagaatct tctccgcatt tagtgcattc gcatcaagca agaattgtga
      661 gataatatta aagccatctt catcaattat ctctaagcct acaagttttt gcattatatg
      721 tttgataagt tctcgattat caaatgatat ttgggatttg cccttaatac gtattatatt
      781 gtagccaagg aggtaagcac catagatctg attaactaga ctatctatcg aggcaggggt
      841 ataagggatc gtcacttctt tcatatcttc gttacctaca tccgacgaaa acaaagagat
      901 cgaattatcc ctattaatct caattaacac catatttcct ttttttaagt tgtggttttt
      961 gatccattcg ctgggtaatg aaaccaacat gctactgcct attttttgta gccttctagc
     1021 gtatttagtc ataattagat ttatactgat ttatattaat taaacactat ttttatattt
     1081 tttattatct ataaattcaa tatgacatcc gtagttgtgg agcccattgc cgtggctaga
     1141 gcattcagcc caggtcacat tactggtttt gttgtaagga aatcagctac aactaggaat
     1201 aataattatc tttatgttgg ttccaaggga gcgggttttt caattgaccg gggaattaca
     1261 actacggttg aaatttatga gcacgattta gttaattatc ggatttcaat taatggcctc
     1321 aaagttgaaa atgcagaagt gtctaaatgg gttctagaaa aatatctcaa acttattgat
     1381 aagcactatt acatcaatat cgaacatgaa atcaacattc ctataggctt tgggcttggt
     1441 tctagtggag ccgcagctct aagtttatct tatgcactta atgaagcatt taatacaggt
     1501 ctgagtatga aggaggcagc acaggttgca cataatgcag agattgcttg taaaacaggt
     1561 ctgggaactg taatcgcaga atttacagga ggattcgaaa tgcgaattga tcctggggct
     1621 ccaggtattg gtactgtaga aaagatcgaa ctcaaaaacc ataaagctgt cattctgtgc
     1681 atttctccaa tttctacaaa atcatttctc agaaatcata tctatttggc agatggactc
     1741 ggtgagaaga tgttaaaaag attaagggca tcgagagaga ttgatgactt tttagagatg
     1801 tcgtattact ttgcacacca tctcggatta actgaaggga gatgcaaact ccccattcaa
     1861 agactaagat ctcaaggttt tgaatgtgga gtggcattat ttggagagac attatttaca
     1921 atagtccaaa gtgaccgggt gaatgaagta aaagaatgtc ttaaaggttt taaaggtgat
     1981 ttaattgtat gcaatattga taatactgga gcaagaagcg tatagttaaa aggtacatga
     2041 atatcccatc aaaccatcct cgtgcaaaat ctctttatat aagagagcta ctcgttactg
     2101 gttttagaaa cggattagtt gctccagagg gcctgattgc ccatggcaga ggagaagctt
     2161 tcgattatct tttgggtgaa catacaacta aagctgcaca tgatgcagca aatgctgctt
     2221 cttctatgct tttactttcg aaatatcctg taatttcagt taatggtaac gtggctgcgc
     2281 tttgtgcaaa agaaattata gaattgagcc acgttactgg tgccgcaata gaagttaacc
     2341 tcttttatcg tactactgaa cgtgaaatgg caattgaaaa agaattgaaa aagaataaag
     2401 cgaagactat tcttggaata ggttccgaag catctatgcg aatccccgaa ctacagagtg
     2461 aacgaagaag agtagatcct aatgggatct ataaagccga cactttgctt gtaccattgg
     2521 aagacggcga ccgagccgaa gctcttgtaa atatgggcaa aacagtgatc acgatagatc
     2581 taaatccact atcaagaaca gcaaaagtag cacacataac aattgtcgat aacatcatca
     2641 gagccattcc tgagatgatt gttgctgcaa agcagctcaa agagaaaaat gcttcggtaa
     2701 tgaagagaat tgtggaagaa ttcgataaca agacgaacct tgcaaagtca ctcaaaaata
     2761 ttcgtggcga tatatagatg caatacgaag aaaccaacaa cggcagaaaa gcaagaaaaa
     2821 aaataagagt aaatgacgtt ataatgatga aacaaaaaaa ggaaaaagtt tctgttctta
     2881 ctgcttatga ctattctact gcatcaattt gtgataaatc aaacgttgac atcttgcttg
     2941 taggtgatag tgcagggatg ataatgcttg gctatccaaa cacgattccg gtaagcatgg
     3001 aagaaatgct attattctgc aaggccgtat ctcgaggaac aaagagagca atggtcatag
     3061 cagatatgcc atttgggtca tatcaaccta acgtcaataa tgctgtaaaa aatgccattc
     3121 aatttatcaa agcaggatgt gacgctgtaa aacttgaagg tgcagatgaa ataattcata
     3181 caattagaga tatagttaat gctggagttc ctgttatggg acatataggg ttaaaacccc
     3241 agacttgtac cttgtgggaa ggctacaagt tacaaggaaa cacaaaggat tctgcgttaa
     3301 aactgattgc agatgcaaaa gcattagaac aagctggagt atttagcata gtattggaga
     3361 tggttgcaag tgaagttgcg gaagtaattt ctaaaaatac tactatccct attattggaa
     3421 taggttctgg ttgtggttgt gatgggcagg tgctcgtcct acatgacatg cttggaattt
     3481 atgaagagat caaaccaaaa tttgtaaaac gctatgcaga actttctaag ttaatcctag
     3541 aagttattct acaatataca aatgatgtta aatcaagtaa atttccagag gaacaaaata
     3601 cctttcatat gaatcctacc gaattaaaga atttaaacaa agcattaaag gaaaaaatag
     3661 attttaaaaa tgaatgtgat aaaaaaagca aatagtagaa gaacaatagt ccatccatca
     3721 aaggatatta ctggtttaga aggcaaagat ctagcaggaa agaaaatagt gctgtgcatt
     3781 actggtagca tagcagcata taaagcaatt gatttagctc gtttacttat gcgacatggt
     3841 gctgatgttc atcctgtaat gtcagaaatg gtagcttcga cattgcttac tccagatatg
     3901 atgaaatgga ctacgggtaa tcatgtggtt acaaagttaa caggaaatct tgaacacatc
     3961 tttcttgctg attacaacat gtctgaccta attcttgttt atccgtgtac tgccaataca
     4021 ataggaaaag tggccaatgg aattgatgac acgccagtta cgtctatttt aagcgttgct
     4081 cttggatcta gaatctcaat aatgattgca cctgcgatgc acaaatcaat gtacagcaat
     4141 ccatttataa aagagaatat ttgcagacta aagaatcaag gtattgaatt tttagaaccc
     4201 ttgatctctg aaggaaaagc caaagttgcc cgctctgacc aagttctaaa ttcaatttta
     4261 aataaattta aagaaaccag aataaacgga gttttgttat tagccggtaa gaacgtctta
     4321 gttactgcag gtagcacaat cgaatacata gatccaattc gcgtaattac aaatctaagt
     4381 tcaggtaaaa tgggaaatgc aattgctgaa gaagcagcga aaagaggtgc aaatgttaca
     4441 atagtatgcg gacatacaac atatgactcc tttagttctt taactaataa tatcattaag
     4501 gtaaacacaa gtgatgaaat gtataacact gtcatgacag aactttcttc gaagaaatat
     4561 gatattgtta ttctagcagc agcagtagca gatttcaaac ctgaagagaa aaaatttaca
     4621 aagaaaattg atagcagaaa agacaaactg ttgttaccac tttcatctac aaaaaagatt
     4681 atagataagg tcaagcaaac aagtaagact gatacactcc tagttgcatt caaggcagaa
     4741 taccgtgtct caaattcgca tatagtaaat agagcatatg agaaattaaa agaatgtaac
     4801 ggtgatctaa ttgttgccaa tgatgttggt agagaaggct ctgaaattag ttctgacaac
     4861 aatgaagtgt ttatagtaga taggcagaaa aaagttattc atttaccgct gcaaaacaaa
     4921 agagatatag caagaaagtt gcttgatata attgagaagt atctcgataa caaggaaatc
     4981 aaagataata attcaataaa ttaagcagat cattttattc acataacaaa tttctcggag
     5041 aatcctgttt ctaatcgttt acttgttatg cgaaagaagt caagaacaca acaacattat
     5101 taattatagc tggattaata ttttgataac attcatcatc tctcatatgt gatctaacta
     5161 gagccatatt aagcaattga gcaaattgat tcatttactc aatgctcgag atagattatg
     5221 ctcttaattt actaatttaa tgacttatac ttctactttc tccatatttt cagtggttgg
     5281 ttgtgaaggt gttattatgc gattaagacc atctatagcc cattcttcaa gccatgtaca
     5341 cttttctgga ctgtattgac ctgtctcatc ctctgatgag cacaaatgtt ggaaagtgca
     5401 actgaaacat ggagcacctt ctacacttgc tattcctata ggttttttag
//
LOCUS       DASQSJ010000014         2915 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_399120, whole genome shotgun sequence.
ACCESSION   DASQSJ010000014 DASQSJ010000000
VERSION     DASQSJ010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399120"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..1920)
                     /gene="ade"
                     /locus_tag="VE223_00330"
     CDS             complement(46..1920)
                     /gene="ade"
                     /locus_tag="VE223_00330"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000034 - adenine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HZC20067.1"
                     /translation="MERAASFEQKINTNLVSSLDDLDFSIEDLKRKIDLATGKEKVDL
                     VVKNANIVNVFSGEIHKGNVAIADGMFVGFGQTEEYMEYHAQNIIDVQGKFMCPGLVD
                     GHIHLESTFLAPREFCNIVALHGTSAVICDPHEIANVLGLPGIDYFIGSTIGLPVKVY
                     VMMPSCVPATHLETSGAVILDRDIHEYIDSNPNLVIGLAEMMNYPGVISKDNQTLSKL
                     IVGGSKPKDGHAPLLSGKSLDAYVIAGLGSDHECTNLKEAIEKIRKGMHIMIRQGAHE
                     KNLQDLISLINDFNSSHISLVSDDRDVIDLKENGHMDYLVRTAISFGLPPIRAIQMAS
                     INTARYFGLKNIGAIAPGFKADFILLDNLESFIISEVFLDGKRIDTYSSGNAEDKIYG
                     VTSDIHVNNKSSPSSLSILQNTIHIKALDNQNMFTIPKSTKCSTSLLVIGVVPGQIIT
                     QKRIIEPKVNEYHCPIADAKRDIAKLAVIERHHRTGNVGLGFVQGLGLQRGAIASSVA
                     HDSHNLVAAGMNDMDMLTAAKHILSIGGGLVVVNDEHVIASLPLPIAGLMSDQSIESV
                     ISNLNAVNEACRKLGNNVIKDPFMLLSFMSLPVIPSLKLTDKGLVDVDKFQFINLWVE
                     "
     gene            complement(2064..2519)
                     /locus_tag="VE223_00335"
     CDS             complement(2064..2519)
                     /locus_tag="VE223_00335"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HZC20068.1"
                     /translation="MKYKAQISEERSPKEYCTWQEVEVLVEKLAHTIQRSGKKYDVIL
                     AITNGGIIPARLIARELDINHIQFVPIRNKKLHVEEMLPLLKGRKYLVIDDIYDTGDT
                     FSKVFDVVKEFDCDFAFLMTRYKDGNFILAAKILNHEKWIVFPWERKRY"
BASE COUNT          903 a          555 c          472 g          985 t
ORIGIN      
        1 tttacaaggc atgtattaca aaggaagaat gcaagagtca attaatcact ctacccataa
       61 attgataaat tgaaatttat caacgtctac taatccttta tctgtcaact tcaaagaagg
      121 tataactggt agtgacataa aagaaagtaa cataaatgga tcttttatga cattattacc
      181 tagctttctg caagcttcgt taactgcgtt gaggttcgaa attactgatt ctatactttg
      241 atcagacatt agtcctgcga taggaagtgg caggcttgca ataacatgtt catcattgac
      301 tacgactaaa cctccaccaa ttgataatat atgtttggca gctgttaaca tgtccatatc
      361 attcattcct gctgcaacaa gattatgtga atcatgtgct acactacttg ctatggctcc
      421 tctttgtaga cccaaaccct gaacaaatcc cagtcctacg tttcctgtcc tatggtgtcg
      481 ttcaataacc gcaagctttg ctatatctct cttggcatct gctattggac aatgatattc
      541 atttacttta ggttcgataa tccgcttttg ggtaatgatc tgtcctggaa caactcctat
      601 taccagtagt gatgttgagc atttagttga cttaggaata gtaaacatat tctggttatc
      661 gagtgctttg atatggatgg tgttttgtag aatggatagt gatgatggag aggacttgtt
      721 attaacatga atgtctgatg tcactccata aattttgtct tctgcattac cactactata
      781 tgtgtctatt ctctttccat caaggaaaac ttctgatatt ataaaagatt ccaaattatc
      841 taacagtata aaatctgcct tgaatccagg agcaatcgca cctatgttct ttaatccaaa
      901 atacctagca gtattaatag atgccatctg aattgctctt attggaggta aaccaaaaga
      961 aatagctgta cgaaccaaat aatccatatg cccattttct ttcaagtcaa tcacgtcacg
     1021 gtcatctgaa acaaggctta tgtgagagct attgaaatca ttaataagag aaatcaaatc
     1081 ctgtaggttt ttttcatggg ctccttgacg tatcattatg tgcatgccct tacgtatctt
     1141 ttctattgct tctttaagat ttgtacattc atgatcacta cctaggccag caataacata
     1201 tgcatccaat gattttcctg aaagaagcgg agcatgccca tctttgggtt ttgatcctcc
     1261 tactattaat ttagacagtg tctggttgtc tttagatatt acacctggat aattcatcat
     1321 ttctgctaat ccaataacaa gattaggatt gctgtctatg tattcatgta tatctctatc
     1381 aagaattact gcgcctgatg tttccagatg tgtagcaggt acgcatgatg gcatcataac
     1441 gtaaaccttg acaggtaatc caatagttga gccaataaaa taatcaatac ctggtaggcc
     1501 aagtacattg gctatttcgt gaggatcaca tattacagct gaagtcccat gcaatgcgac
     1561 tatattacaa aattctcttg gagctagaaa agtagactct agatgaatat gcccatctac
     1621 aagtcctgga cacataaatt ttccttgaac atcgataata ttttgggcgt gatattccat
     1681 gtattcttct gtttgaccaa atcctacaaa cattccgtca gcgatagcaa cattaccctt
     1741 atggatctct cctgaaaaaa cattgactat atttgcattc tttacaacta gatcaacctt
     1801 ttccttacct gttgccagat caatctttct ttttaaatct tctatcgaaa aatcaaggtc
     1861 atctaacgaa ctaactagat tggtattgat tttttgttcg aagcttgcag cacgttccat
     1921 tgactagatg caatatcaaa gttcaaattc caagattata aacattcttg gttgttctat
     1981 tctcattaat gataatgata aatgattgtc ctatatctat ctatcaagat ctaaatagat
     2041 agaacatata gtatagacta tagtcaataa cgtttccttt cccatggaaa aacaatccat
     2101 ttctcgtgat ttaatatctt tgcagctaat atgaaattgc cgtctttata cctagtcata
     2161 agaaatgcaa agtcgcagtc aaattctttt actacatcaa atacttttga aaaagtgtcg
     2221 ccggtatcat atatatcatc aataacaagg tatttcctac ccttaagtaa gggaagcatc
     2281 tcttctacat gcaatttttt gtttcttata ggtacgaatt gtatgtgatt aatatctaac
     2341 tctcgagcga taagtctagc tggaataata cctccgtttg taattgccaa gatcacatca
     2401 tatttcttac ctgatctttg tattgtatgt gccagctttt ctacgagtac ttctacttcc
     2461 tgccaagtac aatattcttt tggtgatctc tcttcgctta tctgtgcctt atatttcaaa
     2521 tttgtaatac tcctaattat tttgtttaat aatgacttta ttaacgatcc taaaagaata
     2581 agatcggaac gtcttataag atctaggctg ctgattaaat gagatacaga agatgagatc
     2641 atgcaaaagg ggctggagaa catgccagaa atgacatgat atgaaaccag aatatttcac
     2701 tcctgattta cagcggaaaa taagagaact agtacgaact gtggcactga ctttcccacc
     2761 atcttgagcc tcaaaaagag gtaattttgt catgttgaac gcatataatt tatgtcaatc
     2821 gttttatacg tttgtgaacc ttgactatta tcgaaaaaaa taaaccttgt ttgtttgcaa
     2881 tgccttaaaa agatcgcata tataagcatt gttat
//
LOCUS       DASQSJ010000015         2573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_121163, whole genome shotgun sequence.
ACCESSION   DASQSJ010000015 DASQSJ010000000
VERSION     DASQSJ010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121163"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            391..711
                     /locus_tag="VE223_00340"
     CDS             391..711
                     /locus_tag="VE223_00340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20069.1"
                     /translation="MKKDLKLTIAGSTGFVIAAASILVLGIAITSISNLSVPTTVSAM
                     TMMPGNQTAGHGASNMTAGSGTSMASTAKMHLEEGMKALQSGDTQGAMMHLKLADKTL
                     GGTG"
     gene            1091..1510
                     /locus_tag="VE223_00345"
     CDS             1091..1510
                     /locus_tag="VE223_00345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20070.1"
                     /translation="MPTKLTTTISKISSIPNSVNSELVNDFYEYMRSNGTSERHQNNN
                     LKVMIAYAKFLGPEISFYDIQKKEQIISFLDTKIKSTEQDPDKKRIITWNHNLHRIKH
                     FFRWLTDKTLIHKGDIYSIWKRESQIMVKRNSEAQES"
     gene            complement(1547..>2573)
                     /locus_tag="VE223_00350"
     CDS             complement(1547..>2573)
                     /locus_tag="VE223_00350"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HZC20071.1"
                     /translation="RADKIVQDLLQEQPQGRQQQQRRRIDIRYIEPALQTKTTVLIID
                     RKLSLSVELKDDTKNTSVEAIGLATYSNSTATVLSYASIFESLWAQTELYDQLKVHHK
                     MQREFIDIAAHELRTPIQPILGLSQVLQSRLKNSVEHQELLDAIVRNAKRLQQLTENI
                     LDVTKIESNSLHLNKEQFNLRQIVLNVIADCKSQLKEYDDDNSIMLELVSKEDIFVEA
                     DKERITQVISNLLNNAIKFTQEDKGQQESGISITLEEPENDDRNKNKNNKEIIMRVKD
                     KGIGIAPEIMPRLFTKFATKSEKGTGLGLYISKSIVEAHGGRIWAENNNDGRGATFSF
                     SLPTLNR"
BASE COUNT          792 a          460 c          445 g          876 t
ORIGIN      
        1 tttggacact cataagctga tctactctct ttacattcta caggcaaaca gccacaatct
       61 gcacatctaa tttgcatgaa ccggctttga cgacatagat aaaaaatgtt taccgagaat
      121 taagttcgtt atctgtcaaa taattttttc tgattagccg ttgaagctgt tcggctaaac
      181 tgtatagaaa aggaaatgga agaagaacaa ggatcccatg aacttaattc agctctattg
      241 aattactata gtcgggattt ttgttttagt agaattttgt agagacatag ccattagtat
      301 caaatattct attcacggta aactttcaga aatggaattt ggatccaatt tggataaaag
      361 aataaataca aacctctaaa acccgtctca atgaaaaaag atctcaaatt gacaatagcc
      421 ggcagtacag gatttgtgat agcagcagca tcaatcttag tgcttggtat agcaataaca
      481 tccatcagca atctatctgt tcctactact gtatcagcta tgaccatgat gccgggaaat
      541 caaacagctg gccacggtgc tagcaatatg actgcaggta gtggtacaag catggcttcg
      601 actgcaaaaa tgcatttgga agaaggtatg aaagcattgc agagcggtga tactcaagga
      661 gcaatgatgc acctaaaact tgcagacaag acacttggcg gaacaggtta gctgaaaaaa
      721 gttaaccaaa aagatctgtt ttaacatcac tttttatttt tgttttttac aatactcctt
      781 gccaatgtat atcaattgat gataattcaa agaccgacta tcatacgttg atttcattac
      841 ttttcactcg gctgcctgtt ttatagaatt ataacgttca gagacatcgt cctcagtaag
      901 agatgttttg ctcttttccg caccaactga tatgtgttac ttcatcacga ataattttgt
      961 atacattatc tttgggccta aatgttgagt caaatttgat tcacacaccc ttgggcccat
     1021 tatatatacg ggttcatata ctcgcagaag gtattatgcg ataagtgcgt ttgaagaagc
     1081 aagataatga atgccaacta aactgaccac gacaatttca aagatttcat ctataccaaa
     1141 ttctgtcaat tcagaattag ttaacgattt ttatgaatac atgagaagta atggcacatc
     1201 agagcgtcat caaaataata atctaaaagt aatgattgct tatgccaagt ttttaggtcc
     1261 ggagattagt ttttatgata ttcagaaaaa agaacagatt atatctttct tggacaccaa
     1321 gataaaaagt acagaacagg atccagataa gaaacggata attacatgga accacaactt
     1381 acacaggatt aaacatttct ttagatggct aacggacaaa accttaattc ataaaggcga
     1441 catttatagc atctggaaac gggagtcgca gattatggtc aaacggaatt ctgaagctca
     1501 ggaaagttga gtgttatgat atgtcatggc tagttatttg agtgtactat ctgtttaaag
     1561 ttggtaaact aaatgaaaat gtagctcctc tgccatcatt attattctca gcccaaattc
     1621 taccaccatg agcttctaca atactttttg atatatacag acctaagcca gttcctttct
     1681 ctgatttcgt agcgaatttt gtgaataacc ttggcattat ttctggagct attccaatac
     1741 ctttgtcttt taccctcatg atgatttctt tgttattttt atttttattt ctatcatcat
     1801 tctcaggttc ctctaatgta atggatatgc cactttcttg ttgacctttg tcttcttgtg
     1861 taaacttgat agcattattt aataaattgg aaataacctg agttattctt tctttgtctg
     1921 cttctacaaa aatatcttcc tttgagacta attctagcat tatactatta tcatcatcat
     1981 attctttcaa ttgactcttg caatctgcta tgacgtttaa tactatttgt cgtaagttga
     2041 attgctcttt atttagatgt agcgagttgc tttcaatttt tgtaacatcc agtatatttt
     2101 cagtaagctg ctgcaaccgt ttagcattcc taacaattgc atctaacaat tcttgatgtt
     2161 ctacgctatt ttttagccgc gattggagaa cttgggataa tccaagtata ggttggatag
     2221 gagtgcgtaa ctcatgagct gctatatcaa tgaattctct ttgcatttta tgatgtactt
     2281 ttaattggtc gtacaattca gtttgagccc acagactctc aaatatagaa gcataagata
     2341 acacagttgc ggtgctattg gaatatgttg caagacctat tgcttcaact gaggtatttt
     2401 ttgtatcatc ttttaattct acagacaagg agagttttct atctattata agaactgtag
     2461 tcttagtttg tagcgctggt tcaatatatc taatatcaat tctccttctt tgttgttgtt
     2521 gtcgtccttg tggctgttct tgcaatagat cttgtactat cttatctgct cga
//
LOCUS       DASQSJ010000016         2149 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_40860, whole genome shotgun sequence.
ACCESSION   DASQSJ010000016 DASQSJ010000000
VERSION     DASQSJ010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40860"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..309
                     /locus_tag="VE223_00355"
     CDS             64..309
                     /locus_tag="VE223_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20072.1"
                     /translation="MHVRKSDKEAIIILAIASSIQYTSQYKYTDVILYRDIIAIFGSD
                     YYYSRSKQELKKAIEILEAFNRGVSKNNPFHKKIPKT"
     gene            400..819
                     /locus_tag="VE223_00360"
     CDS             400..819
                     /locus_tag="VE223_00360"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HZC20073.1"
                     /translation="MTKSVFYIAGLLILFLGLVIVLASIHFQQTRSAAYVQTTTTTTT
                     ASVSIVKGASSPSIAKPYDPSPLTVKAGTSVTWTNSDSTLHTVSSGLPEEGAVGTLFD
                     SSLIAPGKTYTHNFDKVGIFDYSCTLHPFMRGQVMVK"
     gene            complement(1402..>2149)
                     /locus_tag="VE223_00365"
     CDS             complement(1402..>2149)
                     /locus_tag="VE223_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20074.1"
                     /translation="FLPLILVILMLVLVFSFSTVKMAYAHLTKKFGNLSVTVGWSNEP
                     ALVGELNNAIVQVNQTSGKTPTGVINALANMNILAKYGGVTKPLDFVPSEQTDGLYNG
                     KIIPTRIGSYSLVLNGTIQGQKINAQIPLDEVQGKQQISFPDSGSSSGVAGGEGGSAP
                     TGAAINSNNVGPQLQGILSQLSNDIDSTRNSIDTIAKNNADTQKSVQDLKNAADRSYM
                     IGMAGIGAGVAGIVIAAVALSRKDILKVPS"
BASE COUNT          666 a          425 c          383 g          675 t
ORIGIN      
        1 gattaagaac cataatctat agttatatgt atattcatgt gattttgcag tgttggcctt
       61 ctagtgcatg tcagaaaaag tgacaaggaa gcaataatta ttctagccat cgcttcatca
      121 attcaatata cgtcacaata caaatataca gatgtaatac tatatcggga tataatagca
      181 atttttggga gcgattatta ctatagccga agcaaacaag aattgaaaaa ggctattgaa
      241 attcttgaag cattcaacag aggtgtctcc aaaaataacc cattccacaa gaaaattccc
      301 aaaacgtaga tgcatatatc taaagcaaat aattcctaaa ctatttagca tcttttccat
      361 gaaaatcatt aaagcacagt tcgtactttc ttaaattcaa tgacaaaatc agtattctat
      421 attgccggtc tgctgatact atttcttggt cttgttattg ttttagcatc catacatttc
      481 caacaaacaa ggtcagcagc atatgtacag acaacaacaa caacaacaac tgcatctgtt
      541 tcaatagtta aaggcgcttc gtctcctagc attgcaaaac catacgatcc gtcacctctc
      601 acagtaaagg caggtacatc agttacatgg acaaatagtg attctacttt acatacagta
      661 agctccggtc ttccagagga gggggcggtg ggtactctgt ttgattcaag tctcattgca
      721 ccaggtaaaa cgtatacaca taactttgat aaggtgggca tctttgatta cagctgtact
      781 ctacatccat tcatgcgtgg acaggtaatg gttaaatagt aaagaatgat cttaactgat
      841 tattcatccc attgataaaa tgtcagccga gatctcgata gacagagtct gtctctgtct
      901 tgaagcattt tatcataagg tttagagctt agaataaaag tttccaataa agatgtcaat
      961 agtctgttag tttcttgagt tgttagccta agcatagcta taccctggta taaatgagca
     1021 gctctttttg cattgtgacc tctttctctt tttattaaat tttgacaata gcatatgaaa
     1081 cgtttaatga aataatataa tacaaaacga tgcattagca ttagatagac agtgatctac
     1141 tagagaatgg ttaaaagttg aatttacttg aatactcagt gacattaaat gttcaattta
     1201 acatgaagta cttttgctgc acctttgagt attaaaataa aagtaatgca gtacaaggca
     1261 tagccttatt cctgtacctg tattagattt tgtaagctgc agaaatttat tactgtgatt
     1321 aacttataat gctttgctag aaactgcctt ggaatttgaa tatgattgta tctgccaaga
     1381 ataattataa ctactacagt attatgacgg aaccttaaga atatccttac gggaaagtgc
     1441 tacggctgct atgacaatcc cagccacacc cgcccctatt ccagccattc ctatcatata
     1501 agatctatcc gctgcgttct tcaaatcctg gactgatttc tgcgtatctg cattattttt
     1561 ggcgattgtg tctatgctgt ttctagtcga gtcgatatca tttgacaact gactgaggat
     1621 tccttgtagt tggggtccaa cattgttact attaatggca gctcctgtgg gggcactacc
     1681 accttctcct cccgctactc cgctagaact gccgctatct ggaaaagata tctgctgctt
     1741 tccttgaact tcatcaaggg gtatttgagc attgattttc tgtccttgta tcgtaccatt
     1801 caatacaagg ctataggagc caatcctggt aggaattatc ttaccattgt acaatccatc
     1861 agtttgctct gagggcacaa aatcaagcgg ttttgttact ccgccgtact ttgccaagat
     1921 gttcatatta gccaaggcat ttataacacc tgttggtgtt tttccgctag tctggttaac
     1981 ttggacgatg gcattattca gttcccctac aagcgccggt tcgttactcc aaccaaccgt
     2041 cactgaaagg ttaccaaact tcttggttag gtgggcatat gccattttaa cggtggaaaa
     2101 agaaaaaact aaaactaaca tcaagatgac caatatcaac ggcagaaat
//
LOCUS       DASQSJ010000017         6553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_2561, whole genome shotgun sequence.
ACCESSION   DASQSJ010000017 DASQSJ010000000
VERSION     DASQSJ010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6553
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2561"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1050..1181
                     /locus_tag="VE223_00370"
     CDS             1050..1181
                     /locus_tag="VE223_00370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20075.1"
                     /translation="MTTCPICKGSGKLPVTQEPKAESHGEETVSECPTCYGKGEVDK"
     gene            complement(1810..2034)
                     /locus_tag="VE223_00375"
     CDS             complement(1810..2034)
                     /locus_tag="VE223_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20076.1"
                     /translation="MGAVFRPKDLARGNRKIIDNAIKDFTPDTKDNATSLLDSEKGEE
                     KESEDRVKKILGQDKAKQLMSDIKSKEKIM"
     gene            complement(2594..4339)
                     /gene="poxB"
                     /locus_tag="VE223_00380"
     CDS             complement(2594..4339)
                     /gene="poxB"
                     /locus_tag="VE223_00380"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF006591.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_function: GO:0052737 - pyruvate dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006090 - pyruvate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HZC20077.1"
                     /translation="MAKKVADIIVDSLIASGVRRIYGVAGDSLNGITDAVRDRGKEKI
                     SWIHVRHEETAAFAAGAEAHLTRELAVCAGSCGPGNTHLINGLYDCYRNRVPVLAIAA
                     HIPSREIGSSYFQETHPELLFKECSHYCELVSRADQIPRILDIAMRTALSLSGVSIIV
                     LPGDVALQEAVSARPITRIKQPEVVVCPSPQGIAELAEALNSSEKVTILGGAGCAGAH
                     SELIKVAGILQAPIVHAMRGKEFIEYENPYDVGMTGLLGFSSGYYAIMNSDLLLMLGT
                     DFPYQQFYPPHAYIVQIDIRGEQIGRRTKVDLGLVGNVRETLTALIPLLKQKEPEKGN
                     HHLKKSLDHYREARKNLDAHAVGKTGQKSIHPQYVAKLIDELASPEAIFTCDVGTPTI
                     WAARYLHMNGKRRLLGSFSHGSMANALPQAIGAQEAFPDRQVICLSGDGGFSMLMGDF
                     ISLKQLKIPIKVVVFNNSSLSFVELEMKSAGFLSYATDFVETDFSKLAEAVGILGLRA
                     ERPEQVKSSLSQALEHEGPALVDVTVNRQELAMPPTITLEQIKGFTLYMIKAVVNGKG
                     DEVVDLAKTNLFTYH"
     gene            5619..>6553
                     /locus_tag="VE223_00385"
     CDS             5619..>6553
                     /locus_tag="VE223_00385"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03619 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HZC20078.1"
                     /translation="MKVGISLPQIGQQATKDNIIHVARQAEKEGFDSVWTFDRLLWPL
                     NPQTPYRGTSDGRLPIEMQNVLDPIALLTFVAANTDKIALGTSVVDMLFHTPVILGRR
                     FATLDVLSEGRVISGLGIGWSEDEYQASNIPFKKRGKRADEFIQVLKKIWTDDVVEFK
                     GEFYNIPSSKIGPKPIQKPYIQIYLGGYDPKAFSRIVNYGANGWLASMSGGKSLQDLG
                     NSISELKDRARKANKNPNDFRIILLTYPGRSFNKSDGSNSNSNNSNNSSSTRLPFTGT
                     IDEIGTDIQRIKEFGIVDHIIFSYNFSAEAENIDK"
BASE COUNT         1997 a         1255 c         1182 g         2119 t
ORIGIN      
        1 gggaagaatc taacggtatt ggattaatag atgataattt ctggataatt actagataaa
       61 tgttgttatc tggaatgcac tcattattaa caaaggcatg aatacatctg gataagaaaa
      121 atccataaga tatagtatac aatgcttaac tatctatcat ttcatcaata taagatcaca
      181 gcattttagc atcgactttt gtacagcata ttaaaaatag catagaagat atcctcaaat
      241 caaacgtatt gctaaagaag ttacagacac gataatatta catttaacga tggagatata
      301 ctcatactat gctttgggat ttgctctttc atgttccttt ctatgtagtt aacagataca
      361 tgctgtagat atgagtctta gatattaaca gggttgtgaa tatcccatat atgattggaa
      421 ttggtagacc tataatctat atcattattg gagtcataat aatagcttta gtgtattatt
      481 ttaggaagtc aagaagaata agaacaggac taaacggtta gtatagactg caataaacct
      541 tatgccatct ctttagtggt ttccttccct ttgagtaatt ggatactccg acttgtatat
      601 tctttaaaat agtattcagg ttgggtcgct attaccttgg cgagttagac cgtcccccaa
      661 gcacagatta acgaacctat cactacttgc aacttcttca gagagtctta taagttgctt
      721 ataatgatga atataataga cataaaaata ggttgtattc ttatcggatt ggcagaataa
      781 gagcatgcag aattatataa aagagcaata gaaaacatcc tatcaaatac cttcctatct
      841 gacttgtcaa gacattttct aaattctttc cattcatttt gttccattac actggctatt
      901 ctaaatgaag gaattgttct gcccatctaa tgactcctgt atttattttg agatactggc
      961 agtagctaat aaatacagac aataatgggt atattttgta tcgatggtgc aatgagtttc
     1021 aaaattatga agaggtatag caaatcgtaa tgacaacttg tcctatctgt aaaggttctg
     1081 gtaaattgcc agttacacaa gaaccaaagg cggaatcaca tggtgaggaa acagttagcg
     1141 agtgccctac atgctatggt aaaggagaag tagacaagta ggccaagtat ttgtcattat
     1201 tttatctaag agtatatatt agaatcagac taaaatctga ctaatgcctt gctagttgtt
     1261 actagttgta ataacattat ctattacttt aatcaaagct aatcttaggt agcaatatgc
     1321 acatttcaga tatatacaga ctggtatgag ctgtactaca gttgctggat gatatcttag
     1381 tatagagccg ttacaccagt tcctattgtt attttattag ttctagccaa tgcagctcga
     1441 gccatggcta tgcttccaat cctgaagctc ctatgttcca ccaagacata taatgatcac
     1501 cactccagca tcgatcaatt ccattctagg gtacgtatat cacgtcatgc aaaaagtcag
     1561 atggatttaa ccttttcatg agcagcaatt tcatctttta ataatttcaa agctgctgaa
     1621 cggtacagta gattcttctt cttattagtg gtttaagaca agagttaagc ctgtataggc
     1681 agcaaggtcg caagacaact ccaagagcta tatatttaca ggttatattc acctttattt
     1741 acctaattgt ttctgggatg attccagtac ctgtctaatt aatgtcatac agagccaaca
     1801 aaagtaattc tacattattt tttcttttga tttgatatca ctcatcaact gtttagcttt
     1861 gtcctgaccc aggatcttct ttactctatc ttctgattcc ttttcctctc ctttttcaga
     1921 atccagcaga ctggtggcat tatctttagt atctggagta aaatccttta ttgcattatc
     1981 tattatcttt ctgttacccc tagccagatc cttgggccta aatacagcac ccatataatg
     2041 tactatggag cttataaata ataagactgt ttggatttaa catgttaaaa gggtataata
     2101 tttctaatta ttttattcat ttgcatgctt ttgaaaactc ctcgaatgtt gagtaagatt
     2161 gataatatca acctcaaaat aaaaggtgac agctatggaa ctagaagcaa ttccttactt
     2221 tcctctgcca tccattatca cttgctatcg ttacgttgtt gttgctcctg ttgttgttga
     2281 ttgtcgacta tcactattgc actaccgtcg ccatcatcat tgaatgctgt ctcttttctg
     2341 ggtttttgct catcatttca ccaatattta tagtcattat gacgtgcaat tagatcgaca
     2401 accaagcagg tcactcttaa aattcaaaat caaaataaat tttgaagata actaaaattt
     2461 cggttttgta tatgaaacca tatagtctag tcttccgaaa aaggaaggac attcttaatg
     2521 actgctagct gattttcaga agccatacat ctatctgcta tcttcagtaa tggttaaaca
     2581 ggaaagaata gagttaatgg tatgtgaata ggtttgtctt cgctaggtct acaacttcat
     2641 ctcctttgcc attcactact gcctttatca tataaagtgt gaagcccttg atctgttcca
     2701 gagtaattgt tggcggcata gccaactctt gtctattcac agttacatca accaaggctg
     2761 gaccttcgtg ctctaaagcc tgacttagcg atgactttac ctgctccggt ctttcagctc
     2821 gtagtcccaa gattccaact gcttcagcca gttttgagaa atcggtttct acaaaatcag
     2881 ttgcatagga gaggaatccg gctgacttca tttcaagttc tacaaaactc agagagctat
     2941 tattaaagac aactactttg ataggtatct ttaattgttt taatgagata aagtccccca
     3001 tgagcataga gaacccaccg tccccagaga ggcaaatcac ctgacgatct ggaaaagctt
     3061 cttgtgctcc aattgcttgt ggcagagcat ttgccatcga gccatgtgaa aaagatccta
     3121 gcagcctccg tttgccattc atgtgtaaat aacgtgcagc ccagatggta ggggtaccaa
     3181 catcacaggt aaatatcgcc tcgggtgatg ccagctcgtc aattagcttt gccacgtact
     3241 gaggatgtat tgacttctgc cctgtcttgc caactgcatg cgcgtccaag ttcttccgtg
     3301 cctctctgta gtggtcaagg gatttcttca gatgatgatt acctttctct ggttctttct
     3361 gcttaagcaa tggtatcaat gctgtcagtg tctcacggac atttccgact aatcccaaat
     3421 ccacttttgt acgcctacct atctgttcgc ctcgaatgtc tatctgaaca atgtatgcat
     3481 gaggaggata gaattgctga tacggaaagt cagtgccaag catgagcagc aagtcagaat
     3541 tcataatggc atagtatcct gaagaaaaac cgagtaatcc cgtcattccc acatcgtatg
     3601 gattttcata ttctatgaac tcctttcctc tcatagcatg aactattggt gcctgcagaa
     3661 tgcctgcaac cttgatcagt tctgaatgtg ccccagcaca acccgcaccg cccaggatag
     3721 tcaccttttc tgacgaattg agagcttctg caagctccgc aattccttgc gggctgggac
     3781 aaactactac ctcgggttgt tttatgcgtg tgatgggcct agcagataca gcctcttgca
     3841 gtgcaacatc acccggaagg acaatgatgg aaactccaga gagtgaaagg gctgtcctca
     3901 ttgcaatatc tagaatacgc ggaatttggt ctgcacgtga gacaagctcg caatagtgac
     3961 tacactcttt gaacaaaagt tccggatgtg tttcctgaaa gtatgagctt ccaatttctc
     4021 tgcttggtat atgtgcagca attgccaaga caggaactct gttccggtaa caatcgtaaa
     4081 gtccatttat caaatgcgta ttccctggcc cgcagctacc agcacatact gccagctctc
     4141 gagtaagatg agcctcagct ccggctgcaa aagcagctgt ttcctcatgg cggacatgaa
     4201 tccaggagat tttttctttg cctcgatctc ttacagcatc tgtaatccca tttaaagaat
     4261 ctccagctac tccgtatatc ctcctaactc cggacgctat tagcgagtca actattatat
     4321 ctgcgacttt ttttgccaag gtcactgatt cactctctta tgcttatgat tgccccaaga
     4381 ccttgataaa gatctccata tcaaagcaca aggtcaccag ctgcagcttt tgattaggag
     4441 aatttggtgt aattcccata tagatcgcgg tgataactat gagtatgagc gttttaacat
     4501 ttctccctca tggttttctt attcaatcga ttatttaaca aaccaactat ttcctactat
     4561 gataaggtga tttgatttat tattattgtt gttggagtat gggtgacata gaacttacag
     4621 gatgtatctc atcccatcct ccagtctcag tatctataac ttatgatcct gtaatctgca
     4681 catggctatg taatagtggg ataacaatat tcgactgata attctggcaa gcagcaattg
     4741 catcagacat actgcgtttt atttggtgaa agcatactgc ttctaccatc aaattaccat
     4801 ttagctgttt taaaacagca attatcccta attttggaat ttaatctttt atgtttctct
     4861 acgtcttcga tccaaaatgg tttattgtat atttttcaat gagctttgca agtttctcat
     4921 tcgagacctt gatagcattt aacgataatt tttgaccagc ttgctgatat tgttgataaa
     4981 tatcgctctt gttcttcttt ttgctcttgc ttttgacatt ccagggttat cttactaaga
     5041 tctttgaaag tcattagtcg aaagtcaata ttatcacatt aaaggataac taaaaccttt
     5101 tatgttatca aagtgcatgt ggatgcacct ttgattttag tagtagtcaa ctagccataa
     5161 aaataactaa tttactacct attcttgcta cttcttctta gcactcttaa ctggcttctt
     5221 tgattgcttt ttgttattat ttgattttgc caatagttta tctaattata taatttgcct
     5281 ggttgtatat attataattg aataaatata tcatgcaaaa ttataattaa aaatatgact
     5341 aaatattatc caaaataaac aattccaata aaaaaagtac gttagctgaa gaatgtggta
     5401 atggcacgtg atcagctatg attagcaaga acatatttac gataaactta cctcacacaa
     5461 tttcagactt gatgtcgttg gcgtcaatag tagaagcaat tacaaggaca tcttaagaag
     5521 taagattata caggttcgtt gttaaactcc ttccttttaa tattagagca gctgttaaca
     5581 aatctttttt aaaatgagaa tgtgtgagga gctttataat gaaggttggt atctccttac
     5641 ctcaaattgg acagcaggcc acaaaggaca atataattca cgtggctaga caagcagaaa
     5701 aagaaggttt cgactctgta tggacttttg atagactcct ttggccttta aatcctcaga
     5761 caccctatag gggaacttca gatggacgac ttccaattga aatgcaaaat gtacttgatc
     5821 caatagcttt acttacattt gtagctgcaa ataccgacaa aattgcattg ggaacctctg
     5881 ttgtagatat gctatttcat acacctgtaa ttttgggaag gagatttgcg acacttgatg
     5941 ttttgtcaga aggaagggta atttctgggc ttggtattgg ctggtcagaa gatgaatatc
     6001 aggcttccaa catcccattt aaaaaaagag gtaagcgagc cgatgagttc attcaagtat
     6061 taaaaaagat atggacagat gatgttgtag agtttaaagg agaattttat aatataccat
     6121 cttctaaaat agggcctaaa cctattcaaa aaccatatat ccaaatttat ctaggaggct
     6181 atgatccaaa agcattttcg aggattgtaa actatggcgc taatggatgg ttagcatcta
     6241 tgtctggcgg taagtcgctc caagatctcg ggaatagcat aagtgaatta aaagatagag
     6301 caagaaaggc aaacaaaaac ccaaatgatt ttagaattat tttactgact tatccgggaa
     6361 gatctttcaa taaaagtgat ggcagtaata gtaatagtaa taatagtaat aatagcagtt
     6421 ccaccagact cccattcaca ggaacaattg atgaaattgg tactgatata caaaggataa
     6481 aagagtttgg aatagtagat cacattatat ttagttataa tttctcagct gaagcagaaa
     6541 atatagataa gat
//
LOCUS       DASQSJ010000018         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_480334, whole genome shotgun sequence.
ACCESSION   DASQSJ010000018 DASQSJ010000000
VERSION     DASQSJ010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480334"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..287
                     /locus_tag="VE223_00390"
     CDS             <1..287
                     /locus_tag="VE223_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase Rpb4"
                     /protein_id="HZC20079.1"
                     /translation="ILEAVKPDDMDQIQRWTYDYVGKFAKTNSTIGKKMVDELVNQCE
                     LKEEEAVEIVNVLPTSLEELRAFSFGWKKLVLTENLEKMLSILKMSTEVK"
     gene            322..939
                     /locus_tag="VE223_00395"
     CDS             322..939
                     /locus_tag="VE223_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF655 domain-containing protein"
                     /protein_id="HZC20080.1"
                     /translation="MSKSTPHYNNSGRMDEQSSGMQQYPRKYEEYAYILDFTQRGKST
                     TVRGREGIIIQAIGEERLTLLELLGFENMNFDVGERVYIGREGRDKVMSVLGRLEYNL
                     ISQSAKNDLINIVEKIVTANEKRFIDYINTAQPITPRIHALELIPGIGKTYMMTIIKE
                     RDKKKFESFMDIQNRVGLRDPAKLLAKRIIDEIAGEARMNLFVRK"
     gene            936..1658
                     /locus_tag="VE223_00400"
     CDS             936..1658
                     /locus_tag="VE223_00400"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA adenine dimethyltransferase family protein"
                     /protein_id="HZC20081.1"
                     /translation="MRWSRRISFGQHMLISFKVLEKVIEASQIRRDEIVCEAGTGNGF
                     LTYELCKYAKLVISFEIDNVLFSNTKKRLSYLSNLNLVNEDLFKRCNLDFNVFVSNLP
                     YSKSKNAFNWLPFQRFDRGIIMVQKEFADKLQAIPGDQNYRAISVITQHCFDIQKLFD
                     VSRKAFYPEPTVESVVIRLIPKCTRITQLTIKNMNLIFSQRNKKASSVAKKFGNSFEF
                     GNTRIEELTPNELIKLAKSMEI"
BASE COUNT          738 a          316 c          392 g          579 t
ORIGIN      
        1 caatcctgga agcagtcaag ccagatgaca tggatcagat tcagcgatgg acatatgatt
       61 atgttggcaa atttgcaaag actaattcaa cgatcggtaa gaaaatggta gatgaattag
      121 ttaatcaatg cgaattaaaa gaagaagaag cagttgaaat tgtaaatgta ttgcctacat
      181 ctctagaaga attgagagca ttctcattcg gatggaaaaa gctcgttctc acggaaaacc
      241 ttgaaaaaat gctaagtatt cttaaaatga gcacagaagt taaataaaaa gcaaaccaat
      301 atcttatacg ggaagatagt agtgtcaaaa tctacaccac attataataa cagtggtaga
      361 atggacgagc aaagttcagg aatgcagcaa tacccgagaa aatatgaaga gtatgcatat
      421 attctagatt ttacgcagag aggaaaatcg actacagtaa gaggacgaga gggtatcatc
      481 attcaagcga ttggagaaga gcgcctgact ctgctagaat tactaggttt tgaaaatatg
      541 aatttcgatg ttggagagag agtatatatt ggaagggaag gacgcgataa agtgatgagt
      601 gttcttggca ggctcgaata taaccttata tctcaatctg caaaaaatga tctcataaac
      661 attgttgaaa aaattgtgac tgcaaatgag aaacgattca tcgattatat caacacagca
      721 caaccgataa cgcctagaat tcatgctcta gaattgattc caggtattgg aaagacgtat
      781 atgatgacga taatcaaaga gagagacaaa aaaaaattcg aatcctttat ggatatccag
      841 aatagagtcg gattaagaga cccagcaaaa ctcctagcaa aaagaatcat tgatgaaata
      901 gcaggagaag ctagaatgaa tctgtttgta aggaaatgag gtggtcgagg agaatctctt
      961 ttggccaaca tatgcttata agttttaaag tacttgaaaa agttattgaa gcctcacaaa
     1021 ttcgtaggga tgaaatcgtt tgtgaagctg gtacaggaaa cggattctta acttatgaac
     1081 tttgtaaata cgcaaaatta gtaatttcat ttgaaataga taatgtatta ttctctaata
     1141 cgaaaaaaag gttgtcttat ctatcaaacc taaatttagt taatgaagat ctttttaaaa
     1201 gatgcaacct tgattttaat gtattcgtgt caaatcttcc ttattccaaa agcaaaaatg
     1261 cctttaactg gttgccattc caaaggttcg acagaggtat aattatggtg cagaaggaat
     1321 ttgctgataa gttgcaggct attcctggtg accaaaatta tcgtgcgata tctgtcataa
     1381 cacagcattg tttcgatata cagaaactct ttgatgtaag cagaaaagct ttttatcctg
     1441 agcctactgt cgaatctgtc gtcataagat tgattccaaa atgtactaga ataacacaac
     1501 taactatcaa aaatatgaac ctcatatttt ctcaaagaaa taagaaagcg tcatctgtag
     1561 caaagaaatt tggtaatagt tttgaatttg gtaacacgag aatagaggag ctaaccccaa
     1621 atgagttaat aaagttagca aaatccatgg aaatttagaa atgtgtcaaa cgcatttggc
     1681 tcataattcc attggtctga acccacggac ttcatattaa ccattctgtt ttctattcta
     1741 tagaagtcaa aattaatctg tggctactac taacctcttc atagcttgcg tttgactcga
     1801 taattgtatg tcttgataac gtttattctg gatatacaat tatacatctc acagactcga
     1861 tcatagctat aaattgtacc taccatcaga tgatactttt ttactagcag aatctgttaa
     1921 gtgctacaag ggaaaatcag ctttagagat aggagttggt tccggaacta tactaaaggt
     1981 tcttcatgaa aattataaga tcgttgctgg aacagatctc gacat
//
LOCUS       DASQSJ010000019         2270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_121710, whole genome shotgun sequence.
ACCESSION   DASQSJ010000019 DASQSJ010000000
VERSION     DASQSJ010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121710"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..162
                     /locus_tag="VE223_00405"
     CDS             <1..162
                     /locus_tag="VE223_00405"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HZC20082.1"
                     /translation="FGRLNVDDNQGVAMRFDVYAIPTFIVFMNGKAVDRAVGAVGEKG
                     LEGLLQKYQ"
     gene            complement(332..2116)
                     /gene="infB"
                     /locus_tag="VE223_00410"
     CDS             complement(332..2116)
                     /gene="infB"
                     /locus_tag="VE223_00410"
                     /inference="COORDINATES: protein motif:HMM:TIGR00491.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HZC20083.1"
                     /translation="MQLRQPVVVVLGHVDSGKTSLLDRVRGTAVQAREIGGITQHIGA
                     SFFPIETIKDITGPLYQRLSKSETQIPGLLVIDTPGHEVFANLRMRGGSAADLAIVVA
                     DVNKGFEAQTIESIEILRKRKVPFVVAVNKIDMVAGWRKNYSQFITEEMKKQDVNVLE
                     ILDTKIYNIVGSLSRLGYSSEAFWRVKDFTKELAIVPVSAATGVGIPELLAVLVGLAQ
                     QFMGRRLERHDTGARGIILEINEEVGLGPSANVILLDGVIKHGDVVAVAKREGAVITK
                     IKALLLPKPLDEMRDPRDKFKPVDQVVSAAGLKITSPDLNGVLAGSPLYVLEKKQDED
                     VLKQMVESEIKSAIINTDSNGVILRSDTIGSIEAIMDLLKKSNVPIRSADIGHITRRD
                     IIEASAVKEKDRYLGVVLGFNVRVLDDAQRESQERNVKIFNEQIIYNLVRTYTDWVTY
                     QREHEESILFNEIPPVCKFQFMRGYIFRRNDPAVFGAEVLAGKLRQKVLVMSNEGKRI
                     GVIQQVQENGKAIEEATKGMQVAVSIKGPVIGRQINEDDTFYTDLNSRQAKMLIERFS
                     YRLNEEEKEIFNDILSLKRKSDPAYGYL"
     gene            complement(2117..2257)
                     /locus_tag="VE223_00415"
     CDS             complement(2117..2257)
                     /locus_tag="VE223_00415"
                     /inference="COORDINATES: protein motif:HMM:NF012554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HZC20084.1"
                     /translation="MIGSTNSFEAAAGTIRGDFGLGLTDNVIHASDSSESFIKESEVI
                     FS"
BASE COUNT          627 a          503 c          382 g          758 t
ORIGIN      
        1 tttggaagac taaatgtaga tgataatcag ggagtagcta tgcgattcga tgtgtatgcg
       61 ataccaactt ttattgtatt catgaatgga aaggctgtag atagagctgt aggagcagtg
      121 ggagaaaaag gactcgaagg gcttttacaa aaataccaat aggtgacaat tctttattat
      181 ttaatttgat gccttatacg caagaggcag cacaaaagta aagtatcaca ggaaaatata
      241 cataattaaa taattaatta attatatttt ctattttcca tttgtataca tagttattta
      301 attagacttc atagaaatat ctggcacaca ctcataggta cccatatgca ggatcagatt
      361 tccgttttag gcttagaatg tcgttgaaga tttctttctc ttcttcgttt agcctgtaac
      421 taaatctctc tattaacatt ttagcctgtc tgctattcag atctgtatag aaagtatcat
      481 cttcgttgat ttgccttccg attacagggc ctttgattga aactgcaact tgcattcctt
      541 ttgtggcttc ttcaattgct ttgccatttt cctgtacctg ttgtataact cctatccttt
      601 taccctcgtt gctcatgact agcacctttt gtcgaagttt tcccgcaaga acctctgcac
      661 caaatactgc tggatcgttt ctcctaaaga tatagcctct cataaattga aatttacata
      721 caggcggtat ttcattaaat agtattgact cttcatgttc cctttgatat gtaacccaat
      781 ctgtgtaagt ccgtacgaga ttatatatta tttgttcatt gaaaatcttt acattacgct
      841 cctgtgattc tctctgtgca tcatctaaaa ctctgacatt gaagccaagc accactccta
      901 ggtatctgtc cttttccttg accgctgagg cttcaattat atcccttcgt gtgatatggc
      961 caatatctgc acttcgaata ggaacatttg atttttttaa aagatccatg attgcctcga
     1021 tcgaacctat agtgtcagac ctcagaatca ctccattcga atccgtattt ataatggcgc
     1081 ttttaatttc agactctacc atttgtttta gcacatcttc atcctgtttc ttttcaagaa
     1141 catacaaagg gctacctgct agaacaccat ttaggtcggg ggatgtaatc tttagacctg
     1201 ctgctgatac tacttgatca actggtttaa acttgtccct aggatctctc atctcatcga
     1261 gtggttttgg caacagcaat gctttgattt tggtaataac tgcaccttct ctttttgcta
     1321 ctgccacgac atcgccatgt tttataactc catctaaaag tataacgttt gcagaaggac
     1381 ccaggcctac ctcttcattg atttcaagta tgatccctct tgccccagta tcatgtctct
     1441 ctaaccttct tcccataaat tgttgtgcaa gccctacaag gacagctagc agctcaggga
     1501 taccaacccc agtggcagca ctcaccggaa caattgctaa ttctttagta aaatccttta
     1561 ctctccagaa agcttctgaa ctgtaaccta acctggaaag tgaacccaca atattgtata
     1621 ttttggtatc cagaatttct aatacattga catcctgctt tttcatttcc tcggtaataa
     1681 attgcgaata gtttttgcgc cagcccgcaa ccatatcaat tttatttact gcgacaacaa
     1741 atgggacctt tctttttcgt agaatttcta tgctttcgat tgtctgtgcc tcaaaacctt
     1801 tattgacatc agcaactaca attgctagat ctgctgcaga accccctcgc attctaagat
     1861 ttgcaaagac ttcatgtcct ggcgtatcta tgacaagtag tccaggaatt tgagtctcag
     1921 atttagaaag tctttggtaa agtggcccag taatatcctt aatcgtttca atagggaaaa
     1981 aacttgctcc tatatgttgc gtaatacccc caatctctcg tgcttggaca gcagtaccac
     2041 gtactctgtc caataatgat gtcttccctg agtctacatg acccaacact actactactg
     2101 gttgtcttaa ctgcacttaa ctaaaaatga cctcggactc ttttatgaag ctttcagatg
     2161 aatctgatgc atggataacg ttatctgtaa ggccaaggcc aaaatcacca cgaatagtcc
     2221 cggctgccgc ttcaaatgaa ttggtggatc ctatcataat tcggactgta
//
LOCUS       DASQSJ010000020         3634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_321388, whole genome shotgun sequence.
ACCESSION   DASQSJ010000020 DASQSJ010000000
VERSION     DASQSJ010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_321388"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..441
                     /gene="nuoB"
                     /locus_tag="VE223_00420"
     CDS             <1..441
                     /gene="nuoB"
                     /locus_tag="VE223_00420"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HZC20085.1"
                     /translation="LDQPLGYAINWGRIWSLWPVHLETACCSVEFGAASGPRYDVERF
                     GIIEAFGSLRQCDLIVVQGTVNRKMAPRLRMVYDQMPEPKYVIAMGACAITGGLYVDS
                     YNVLPGVDGIIPVDVYVPGCPPRPETLIQGTILLQEKIKRSKIK"
     gene            444..1025
                     /locus_tag="VE223_00425"
     CDS             444..1025
                     /locus_tag="VE223_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HZC20086.1"
                     /translation="MSQDQNNKSGSSIKPSQPPSSTPAKAAAPPTKGRTEAPAFENSL
                     VSKIVSRFGDDKIKVAYIRPLRIKVNVDPADIIEVATFIRDNLGFDHAESVTGTDYPK
                     DNQIEVIYQLGSYSKDDIAAHIISLATRTNRDDARLPSLTNVYKSAEYHERETFEMLG
                     VYFEGHPRNERFLLPEDWADLPPLRKEFRIRGR"
     gene            1044..2207
                     /locus_tag="VE223_00430"
     CDS             1044..2207
                     /locus_tag="VE223_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HZC20087.1"
                     /translation="MAENLEHQIDESEKLGMQIVKESEDDRLMTLSVGPQHPGSGHFR
                     FTVKVDGDYVVYCDPDPGYVHRGEEKMCEYRNFIQNIPHLERPVIHDSANITYSYSLA
                     VEELVGIQVPRRGQFIRAIASELDRQIYTLYWLAIYGIFLGHSTMFMWPTGDRELFID
                     LMDALSGARVTHAFNIPGGVRNDMPSGFKDKCLRHISYFEKRLKEYEDIFYTNPLFIQ
                     RTEGVGILTKEDAIRLGVTGSVLRASGVPYDIRKAEPYDVYNEIDFKVQYMKSGDSLA
                     RAYVPLLDMKESCHIMRQLLDKMPESGEVRAKLQPTPKGPPGEAYRRVESGRGALGYY
                     IVSDGSPKPYRVKMSVGSFRNMIALPHLLVGSKLADMPSVYWSLNYWPVEADR"
     gene            2212..3504
                     /locus_tag="VE223_00435"
     CDS             2212..3504
                     /locus_tag="VE223_00435"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HZC20088.1"
                     /translation="MATAPQGFRFGNFVASLVWIILWIVIIVSLIGLPIIFVILFYVP
                     LPPVNGEVLTPYLFLSMMVDPTRTLPIVHFIIHTDIFKVAVFPGFSFAALFAAVTIFV
                     ERKFLAKMQLRIGPLYCGKIEGILQLLADGLKLIAKEIIIPSGADKPIFWAAPIAFVA
                     TAAAVVALIPVAPGWVAANVNVGIIAVFAILGFFPLIALLFSWASNSKYPFIGGLRAL
                     HQMIAFEIPFFLSALSVVILSGSLNLTDIAKAQHPYWYIFFLPISAFVFFISSLAELE
                     RIPFDLPEAESEIVAGWLTETSGMIFGLIQLGSYVKVYALSALFVILFLGGWAGPQIF
                     PKELSHGPTAGLVGLLTLHGIYNGVTVNAIFWFVVKTFGIIMLMLLPRGISPRIRIDI
                     LLHTGWYKLIVLTFINMFIALALIYGGILGPGGLLTGH"
BASE COUNT         1064 a          699 c          797 g         1074 t
ORIGIN      
        1 ttagaccaac cgttgggata tgcaataaac tggggaagga tatggtcgct gtggcctgta
       61 caccttgaaa cggcatgctg cagcgttgag ttcggagcag cttcaggccc aagatatgat
      121 gtagagaggt tcggaattat cgaagccttt ggttccttga gacaatgtga ccttatcgtt
      181 gtacagggaa ctgttaacag aaaaatggca ccaagattga gaatggtcta tgatcaaatg
      241 ccagagccca aatacgtaat cgcaatgggt gcatgtgcaa ttacgggagg cctgtatgtc
      301 gactcgtata atgtccttcc aggagttgac gggatcatac cggtagatgt ctatgttccg
      361 ggatgcccac ctcgacctga aacattgatc caaggcacaa tcttgctgca agaaaagatc
      421 aaaaggtcaa agatcaaata aaaatgagcc aagatcaaaa taataaatct ggcagttcca
      481 taaaaccttc acaaccacca tcatcaacac ctgcaaaagc tgctgctcca ccaacaaaag
      541 gaagaactga ggctccagcc tttgaaaaca gtcttgtttc gaagatagta tccagatttg
      601 gagatgataa aatcaaagta gcatatattc ggcccctacg aataaaagtt aatgtagatc
      661 cagcagatat aattgaagtt gcgactttta ttcgtgataa tttggggttt gatcatgccg
      721 agtctgtaac gggtactgat tatccaaagg ataatcaaat agaagttatt tatcagctag
      781 gatcttattc aaaagatgat attgcagcac atattatttc tctggcaaca cgaaccaatc
      841 gcgatgatgc acgacttcca tcattgacta atgtatataa gagtgctgaa tatcatgaga
      901 gagagacctt tgaaatgctt ggggtatact ttgagggcca tccaagaaat gagcgattct
      961 tgctacccga agactgggct gatttaccac cactaagaaa ggaatttaga attagaggaa
     1021 gatgatgggt gacataagaa aatatggcag aaaaccttga acatcaaatt gacgagtctg
     1081 agaagttagg aatgcagatt gtaaaagagt cagaagacga ccgtctgatg acgcttagcg
     1141 ttggacccca acatcctggc tccgggcatt ttagattcac agtcaaagtt gatggcgact
     1201 atgttgtcta ttgtgatcct gacccaggtt atgtacaccg tggagaggag aaaatgtgtg
     1261 agtaccgtaa ttttattcaa aatattcccc accttgaacg acctgtgatt catgattctg
     1321 ctaacattac atattcatac agcctagctg tcgaggaact ggtaggaatt caagttccaa
     1381 gaagaggtca gttcatccga gctattgcat cagaacttga tcgccagatt tatactttat
     1441 actggctagc aatttatggg attttcctag gtcattctac aatgttcatg tggcctactg
     1501 gagacaggga attatttatc gatcttatgg atgcgttgag cggcgcgaga gtaactcacg
     1561 catttaatat acctggcggc gtccgaaacg acatgccatc aggttttaag gataaatgcc
     1621 taagacatat ctcatatttt gaaaaacggt taaaggaata tgaggatatt ttctatacta
     1681 accctctttt catacaacgg accgagggtg taggaattct tacaaaggaa gatgcgatca
     1741 gactaggtgt tacagggtct gtgttgcgag catctggagt tccatatgat atacgaaagg
     1801 ctgaacccta tgatgtttac aatgagatcg acttcaaggt tcagtatatg aaaagcggcg
     1861 attcccttgc aagagcatat gttccacttt tggatatgaa agaatcatgc catattatga
     1921 ggcagctgct tgacaagatg cctgaatctg gagaagtccg agcaaaacta caaccaactc
     1981 caaaggggcc gccaggagaa gcctatagaa gagtggaatc aggcagaggt gctcttggtt
     2041 attatatcgt tagcgatggt agcccaaagc cttatagggt aaagatgtct gttggttctt
     2101 ttagaaatat gatagcatta ccacatcttc tggttggttc aaagctggct gatatgccat
     2161 ctgtttattg gtcgctgaat tattggcctg tggaggctga cagataataa gatggcgaca
     2221 gctcctcaag ggttccgttt tggaaatttt gtagctagcc ttgtttggat aatcctttgg
     2281 atcgtaatta ttgtttcact tataggcttg cctataattt ttgtaatact attctatgta
     2341 ccgcttccgc ctgtaaatgg ggaggttctt acaccgtatc tattcttgtc tatgatggtg
     2401 gatcctacac gtactctacc aatcgtccat tttataatcc acactgatat atttaaggtg
     2461 gcggtatttc ctggcttttc atttgcagca ttatttgcag cagttacaat ttttgttgaa
     2521 cgaaaattcc tagccaaaat gcagctaagg ataggtcctc tttattgcgg caaaatcgaa
     2581 ggaattttac agctgcttgc agatggcttg aaactaatcg ccaaagagat tattattcca
     2641 tctggtgctg acaaaccaat tttctgggct gcccctattg cttttgtcgc aacagcagct
     2701 gcagtagttg cattgatacc cgtcgcgcct ggatgggtag ctgcaaacgt caatgttggt
     2761 attattgcag tatttgcaat tcttggattt ttcccattaa ttgcattgct cttttcatgg
     2821 gcaagcaata gcaaatatcc attcattgga ggattgcgtg cattacatca gatgatcgct
     2881 tttgaaattc cattctttct ttctgcgctt tctgttgtaa ttttatctgg ctcacttaat
     2941 ctaactgaca ttgcaaaggc acaacatcca tactggtaca ttttcttcct tccaattagc
     3001 gcttttgtgt tctttatttc ctcgttggca gaacttgaaa gaattccatt tgacttacct
     3061 gaagcagaaa gtgaaattgt tgctggatgg cttactgaaa catcaggcat gatttttggt
     3121 ctaatacagc ttggatcgta tgtaaaagta tacgctttat cagcactgtt tgtaatatta
     3181 ttccttggtg gatgggcagg acctcagatc tttccaaaag aactctctca tggtccaaca
     3241 gctggattgg tgggattgtt aacactccac ggcatttata acggagttac cgttaatgca
     3301 atcttttggt ttgtggtaaa gacatttgga ataattatgc tcatgttact tccaagaggc
     3361 atcagcccta gaattagaat agatatttta cttcatacag ggtggtataa actcatagtc
     3421 ttgactttta taaacatgtt tatagcacta gctttaattt atggcggcat attaggaccg
     3481 ggaggattgt taacaggaca ttgataaaac caacaacatc atcagcagct ggaatgatca
     3541 aggctataga atcaggctct aaacaccttg taatcaaaag gtttacctta cggtaccctg
     3601 agcaaaagct caaattcatt ggcgatggct acca
//
LOCUS       DASQSJ010000021         2634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_399562, whole genome shotgun sequence.
ACCESSION   DASQSJ010000021 DASQSJ010000000
VERSION     DASQSJ010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399562"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..992)
                     /locus_tag="VE223_00440"
     CDS             complement(<1..992)
                     /locus_tag="VE223_00440"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZC20089.1"
                     /translation="MISSAESRQSKGRPFIKHKTVNYTCLIIEKIYTRSLLPIAMYDK
                     SVYSKLLHRNIPFRSNLLNVWNTKSKIVSTRNHFNRQTGELSSSHNIGDYEYSNVPGF
                     SGNSYPDNNELAIYIHGVWIGQTSAREQLDRIKLSLNANGYNIPVVGFSWDSNTAINA
                     SGWAIAKFIATQNGPKLAKFISDFKANCPNSNIRIIAHSLGAKVVESALISLDNKNKN
                     NRTWTLDSGYNITSIHLIGAAISDKATSKNRPFGTAIDNIVQNFYNLYNPEDNSLHGA
                     YIKTENQNPLGLFGLRKGEPFPANYTERNVMLEIPPFTKASGIYQAFCDKGIYR"
     gene            complement(1342..>2634)
                     /locus_tag="VE223_00445"
     CDS             complement(1342..>2634)
                     /locus_tag="VE223_00445"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HZC20090.1"
                     /translation="VTSEQPYISHFIFIFDELWKNGIDAKDRIVAIEQGLEPEFLEVI
                     TDHEKASQILVDLVKSVKKEALLLLPVDRAMSRMDRLGIIDYLIHASRNNAEVKIICP
                     LSSENADIVKKISSNAPDIKILNGNKSPHGMFIADGERFLRAELREPFAIEFSEAIGF
                     TIYSNSKHSVESFKSVFELLWNERTINEGLKEIDKLKDEFINVAAHELRTPIQPILGL
                     SGILRSQTKDPQQQVLLDVIVRNAKRLQRLSEDILDVTKIESHNLILKKERFNLNDII
                     SNAISDTTNQVIVKENKENSIKIEFTNSRDKGNEEAGEEGNFLAIIEADKDRISQVIS
                     NLLNNAVKFTDEGNIRVAVQRKDNEVVISIKDTGTGIDPEILSRLFTKFATTSNTGTG
                     LGLFISRSIVQAHGGRIWAGNNSDGKGATFYFSLPLNK"
BASE COUNT          728 a          516 c          412 g          978 t
ORIGIN      
        1 catctatata tgcccttatc acaaaatgct tggtaaattc cgcttgcctt agtaaatgga
       61 ggaatttcta acataacgtt acgttcggta taatttgctg gaaatggttc tccttttctt
      121 agcccaaata agcctaatgg attttgattt tctgtcttta tgtatgcacc atgaagtgaa
      181 ttatcttccg gattgtatag attatagaag ttttgtacta tattatcaat tgcggttcca
      241 aacggtctat tttttgatgt tgccttatca ctaatcgctg ctcctattag atgtatggat
      301 gtaatattgt atcctgaatc tagtgtccag gttcggttat ttttattttt attatctaaa
      361 cttattaacg cactttcaac tacttttgcc cctagagaat gagcaattat ccggatgttg
      421 ctattgggac aattagcttt aaagtcagat atgaattttg caagttttgg cccattctgt
      481 gttgctataa atttagcaat agcccaacct gacgcattta ttgcagtatt tgaatcccag
      541 ctaaaaccta ctacaggaat attatatcca tttgcattca atgacagctt gattctatcc
      601 agctgttctc tagcgctagt ttgcccaatc catactccat ggatgtatat tgctaattca
      661 ttattgtctg gataagaatt tccgctgaat cctggaacat tagaatattc gtagtctcct
      721 atattatgag atgaacttag ttctcctgtc tgacggttaa agtgatttcg agttgatact
      781 attttcgatt tcgtattcca tacattcaaa agattagatc taaaaggtat atttcggtgt
      841 agcagttttg agtagaccga tttgtcgtac atcgcaattg gcaataatga tctagtatat
      901 attttttcaa ttatcaagca agtataattt acagttttgt gcttgataaa tggcctgcct
      961 tttgattgac ggctttccgc agaagagatc aagaaattat ggctagcatg agtagacgat
     1021 tttttacagt atattagccg acgataactt tacagaaccg attttcatgc cattcaaaca
     1081 caccatgcaa accccatcgc tttcatgatg ggatctcagt tagtgtcatt aaggctgttg
     1141 atactatacc accaggttta tgtcatcata tctctctcat ctctttccat gtggttttaa
     1201 ccagctgcta caataaatca aggttttttg aagtgttgca tcaagcaatc aactaatatc
     1261 tatggcattt gcatcataga caccagttca atgtaccatt ctaagctctg tgactcaatt
     1321 tctacttcta gcctgacatg tctatttgtt caatggtaag ctaaagtaaa aagtagctcc
     1381 ttttccatca ctattattcc ctgcccatat tctaccaccg tgagcttgta ctatacttct
     1441 agaaatgaac agtcctaaac cagtaccagt atttgacgtt gttgcaaact ttgtaaatag
     1501 tcttgataat atttcaggat ctatgcctgt gcctgtgtct ttgatgctaa taacgacttc
     1561 attatctttc ctttgtacag ctactcttat attcccctca tctgtaaatt ttacagcatt
     1621 attaagcagg ttggaaataa cctgagaaat cctatcttta tctgcttcta tgatagcaag
     1681 gaaatttcct tcttcccctg cttcttcatt ccctttatct cttgaatttg taaattctat
     1741 tttgatactg ttctctttat tttctttgac aataacctga ttagtggtat cagaaattgc
     1801 atttgatatt atgtcattca gattgaacct ctcttttttc agtattagat tatggctttc
     1861 aattttagta acatccaaaa tatcttctga gagtcgctgt aaccgttttg catttctgac
     1921 aataacatct agcaatactt gctgttgagg atcttttgtt tgggaacgaa gaataccact
     1981 tagtccaagt atgggttgta ttggcgttcg caattcatgt gctgctacat tgataaattc
     2041 atcctttagc ttatctatct cttttagtcc ttcatttatt gttctctcat tccaaagcaa
     2101 ttcaaacacc gatttaaatg attctacact gtgcttgctg ttcgaataaa tggtaaatcc
     2161 aattgcttct gaaaattcta tggcaaaagg ttctctaagc tcggctctca aaaacctttc
     2221 accatcagct atgaacatac catgtggaga tttattacca ttcaaaatct tgatatcagg
     2281 tgcattacta gatatttttt ttacaatatc tgcattctct gaagataatg gacatatgat
     2341 ctttacttct gcattatttc tcgatgcatg tattagataa tcaatgattc ctaatctatc
     2401 cattctcgac attgctctat caacaggaag gaggaggaga gcttctttct ttaccgattt
     2461 taccaagtct acaagaatct gacttgcctt ttcgtgatct gttataactt caagaaattc
     2521 cggctctaat ccttgttcta tagctactat tctatccttt gcatcaattc catttttcca
     2581 taactcgtcg aaaataaaaa taaagtgact tatgtacggc tgttcacttg ttac
//
LOCUS       DASQSJ010000022         2661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_519012, whole genome shotgun sequence.
ACCESSION   DASQSJ010000022 DASQSJ010000000
VERSION     DASQSJ010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2661
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519012"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            667..1122
                     /locus_tag="VE223_00450"
     CDS             667..1122
                     /locus_tag="VE223_00450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20091.1"
                     /translation="MKKTLLQVLLHTNSKTNTQSGLAVLVGLILVLYLGSSIIHLSYA
                     QQAVKTFTIKAQLDKNIVARGDNQTIRYDVADAITGKPVSGAVARATVSYADGTTVRN
                     FTTTTDAAGHASVSWQIENNTVPGTFDTSFTVSAAAYKEETFSDTFSVV"
     gene            complement(1524..2102)
                     /locus_tag="VE223_00455"
     CDS             complement(1524..2102)
                     /locus_tag="VE223_00455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20092.1"
                     /translation="MTFTKSHLSCFLIILMYVFYLSSATIVAHQPRAVAKVLNSSSYF
                     VSTPQKTMGNNTTRSSFRISYQMVINGSHLLTQAYQDEVEKWQLKRYSNSTMISITDS
                     YLPKFQKLIDKAKALQPGTENYAQARDLYIKSLQSEMESYRHFRNFLATNNPAEDRIS
                     TELLSSAWVYESNSFAAFNNATNNSVLLPFKI"
     gene            complement(2254..2505)
                     /locus_tag="VE223_00460"
     CDS             complement(2254..2505)
                     /locus_tag="VE223_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20093.1"
                     /translation="MTNPIRNVVYEKIKQAGNITDSDLMNTLRKDNNILLSEADFNKV
                     LLDLEIYSLIRVTWITKAKRRIEVAGEMTSKPYYGDTVD"
BASE COUNT          846 a          453 c          484 g          878 t
ORIGIN      
        1 aatttcctcc tgatctagtt ctcgtagaat atcatccatc gaatttttta aactatcgaa
       61 ttcttctttt atttgtgaca ccatatataa tctacacttc taactgaaaa ggtttgggaa
      121 ggaaaagcta ctatggtgga tgtagtagtt gaaaggatcc ttgtctattc ttatggcact
      181 gaaggcaaat ttttgtttct gatgttaatg atgctatcga tataaaaagt aaaagccgtg
      241 gagattctgt gctttagctt gatattcgca gatgctgaga gtattgcaca taaatccaaa
      301 tatctaggcc acatagaaac aacagtctta ccacttgttg gtgttggtgc ttagcatggc
      361 cttgtcgaaa gtattggatt atcaaattgt caaacacata tgatgtttca ggatatcata
      421 ttatagggct gttttgctga tctgcaggga ttagtgtgga ttgagctaat gatcggctac
      481 ttgccactac tactattact agtactatgt atatttaata ttgatctaaa ccagatcatg
      541 taagatctaa atgcaaccag aaactagtct tttgttcttc tcataaaaca ttaaccttca
      601 aaaaaagtct ggttcagtta actgtgttaa cgaatcttta atagctattc tcgacttgat
      661 tcactaatga aaaaaacact attacaagtg ttgctacata caaacagtaa aacaaacaca
      721 caaagtggat tagccgtact agtgggtcta atcttagttt tatatttagg atcatctatt
      781 atccacctca gctatgccca acaagcagtt aagacattta caattaaggc ccaattagat
      841 aagaatatag ttgcacgagg agataatcag actataagat atgacgtggc tgacgcaatc
      901 accggaaaac cggttagtgg agctgttgca agagcaactg tatcgtatgc tgatggcacg
      961 acagtaagga attttactac tactactgat gcagcagggc atgcttcagt ctcttggcaa
     1021 attgaaaata atacagtacc tggtactttt gatacaagtt ttacggtttc tgcagcagcg
     1081 tataaagagg aaacgttcag tgatacattt agtgtagtat gaatgacaat aatacagaac
     1141 atgtgtttac caactcatac aaaataagaa ctatactatt tagaggagtt ttgatcagta
     1201 acctctactt ctttgtaata atgaatgtca taggtgttat taattctcct aaaagttcat
     1261 ctttttccta acgcatcgcc gcgatatccg ttgtagggtt ttcggtaatg aagagcagtc
     1321 gatcccacat aagaggatga gtatagccag agaacagccg ccaactggac taagctgatc
     1381 ctttatgtta tgtctttagt ggatttctaa agacagaact gcaataacaa tcaagaatcg
     1441 gcgataactg ttaatataaa tatcgaatgt ccaaaatatg ttcgtgagat agcaaaattt
     1501 tttgggctat tgcctctcta tcattagatt ttaaacggaa gcaatacgct attattagtc
     1561 gcattattga aggcagcaaa ggagttactt tcatataccc aagcacttga caggagttca
     1621 gtagatattc tatcttctgc tggattgtta gtagccaaaa agtttctgaa atgtctgtag
     1681 ctttccattt cagattgaag tgattttata tacaaatctc gagcttgagc ataattttca
     1741 gtaccaggct gcaaagcttt tgctttatca attagtttct gaaattttgg taggtagcta
     1801 tccgtaattg aaatcattgt actattactg taccgtttta attgccactt ctctacttcg
     1861 tcctgataag cttgcgtcaa caaatgtgaa ccatttatga ccatctgata tgatatacga
     1921 aaagaagatc tagtagtatt attgcccatc gttttttgag gagtggatac aaaataggat
     1981 gatgagttca atacctttgc cactgcacga ggttgatgag caacaattgt agcggatgat
     2041 aaataaaaca catacataag tataatcaga aaacatgata aatgtgactt ggtaaatgtc
     2101 atccctctgt cctcagttgt tattgtattt gataagctta tatatgtaat ttgaagctta
     2161 tcaaaaactt ggtgaatgga tatggtagca cgacaaaaga tgatataata aatctttgta
     2221 aatctagtaa gctccacata ttaatcagga ttattaatcc acggtgtcac cataatatgg
     2281 cttggatgtc atttctcctg caacttcgat tctccgttta gcttttgtaa tccatgttac
     2341 tctaattagg ctatatatct caagatcaag cagcaccttg ttaaaatcag cttcacttaa
     2401 caaaatgtta ttatctttgc gcaaggtgtt cataagatct gagtcagtaa tgtttcctgc
     2461 ttgctttatc ttctcataga ctacattacg gattggatta gtcatagtta gtcgtacagc
     2521 agaactagat atttagttat gtttgtatat atatacaaca atcatgcctg caaaaagtat
     2581 tgaaagggtt agtgttaatg ttaatgctga atacaacagt agtatcgcac tcctatttcc
     2641 ataatctcta tttgatattt t
//
LOCUS       DASQSJ010000023         6204 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_240339, whole genome shotgun sequence.
ACCESSION   DASQSJ010000023 DASQSJ010000000
VERSION     DASQSJ010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240339"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VE223_00465"
     CDS             <1..298
                     /locus_tag="VE223_00465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20094.1"
                     /translation="YELEPFGIKVVLIEPGFIKTNFGNSMVIAKRAQNPSSPYSQMMQ
                     KISANSNQLANNGSPVEVVSKVILEAVTSKNPNLQYLAGKDVETCCKQEDHERY"
     gene            complement(528..2687)
                     /locus_tag="VE223_00470"
     CDS             complement(528..2687)
                     /locus_tag="VE223_00470"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HZC20095.1"
                     /translation="MTIHPLPPSSSPEKRSEILYGIENAVGRGIYFMSNVKKRMDIYF
                     DHTAPSIVVEIPEYRNGYVDIRKRGGRIRAFTEITNDNIHYCKELMKLVDELRHLNGV
                     KGGIAVSESEYMATTLLEEAKPLTQVIFSSVKEVVEQGQYIFDTLWNTAIPAEQRIRE
                     IEEGVVPVRTRLVDSQDEIIHEISRLNNSADRLSICSTYGGMQMSYKYFFDSYRRIAG
                     RRHGRADDDDDIGDGGCNDDGLRWIINIDKDSLDLVKVFLESGIQVRHIKNMPPMNFG
                     VSDKEVALTIERMEGGSVSQSFLISNEPLYVNHFNSLFEELWKNSIDAKGRITAIEQG
                     LEPEFLEVITDNEKASQILVDLAKSVRKEALFFLPNDRALLRMERLGVIDYLIHASQN
                     GVEVKIICCLTADNSESVKRMSINAPNIRILNGDISPYGMLIVDGEKFLRAELREPTA
                     IEFSEAIGFTIYSNSKRSVESFKMVFELLWNERKLNEELKRAYKMQKEFIDIAAHELR
                     NPIQPILSLTEILRNKIKDTEQLELLNATIRSAKRLHRLSEDILDVTRIESQSLNLKK
                     EPFSLSEMILNAIADSKNQLKKDNNIIMKLTCMEDFFVEADKARLNQVIVNLLSNAVK
                     FTPEGIISIVVEKNKREEEHGKQIVVSIKDTGAGIDPEIFPKLFGKFVTKSEAGGIGL
                     GLFISKSIVEAHGGKIWAENNPDGKGATFSVSLPLST"
     gene            3258..3683
                     /locus_tag="VE223_00475"
     CDS             3258..3683
                     /locus_tag="VE223_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HZC20096.1"
                     /translation="MTEQPMTGKEIIDKAIVQSQGKWRPSPGLIYPMLGRLLDEGLVD
                     ELNDGRYTITTKGLDMAANVESIHNIFQKQLDLVSRIGNVGKFMAMDLIDRVSVIGST
                     LSSNLDKMTDEEQNKYKQFLQNELRKLDEQERATADDNV"
     gene            4055..4222
                     /locus_tag="VE223_00480"
     CDS             4055..4222
                     /locus_tag="VE223_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20097.1"
                     /translation="MFNSYVNIPTLILTSDKDLYMKLLGRSLFVKAEKGNDPVRIITK
                     QKTHNFKVTYN"
     gene            4308..5171
                     /gene="aroD"
                     /locus_tag="VE223_00485"
     CDS             4308..5171
                     /gene="aroD"
                     /locus_tag="VE223_00485"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF013640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HZC20098.1"
                     /translation="MQKNPSLLPKYNNLITTLDKRPLVCTSIIKDNEKDYFESLVKAI
                     EGGSDLGELRIDFFNKINHEDLFRIMSKSQLPLIVTNRNKENGGSFAADEELRLSLLR
                     SSIESKPAFIDIELSTNEKDRSDIITTSRENSVGVICSYHDFTNTPNPKEIFRIYRKV
                     CETGADLAKLVFTPHTNKDVQNILEATDSLRYESIPFTLFGMGKKGQITRMVCPLLGA
                     SLTYCSLTNNTQNGLYQLSLANTKSFMLRIEKQGWKSIKEKRKNLMTLAMIELNDEGS
                     YPLKSIDKVMA"
     gene            5593..6102
                     /locus_tag="VE223_00490"
     CDS             5593..6102
                     /locus_tag="VE223_00490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20099.1"
                     /translation="MTETSLRNAPRVIKTPTPGDNTFIYVINQVAERGLQVAENDTAV
                     KQIMSGQKGRALTIAAVQPIVLQDNKNGKVSYSPVGQIIITSNWQYVDGKFYSNPANF
                     NGLGNKTGESHQHIWNVFVDLNKRSVTGITEEPERVMKETLEPNLVFTGMNMFMPDTV
                     KVKPGSVLT"
BASE COUNT         1929 a         1235 c         1093 g         1947 t
ORIGIN      
        1 atatgaatta gaaccctttg ggataaaagt tgttttaata gaaccaggat tcattaagac
       61 taattttgga aattcaatgg ttattgccaa aagagcgcaa aatccaagct caccatattc
      121 acaaatgatg caaaaaatat cagcaaactc aaaccaattg gcaaacaatg gctctcctgt
      181 cgaggttgtt tcaaaagtta tcttggaagc cgttacaagc aaaaacccaa atcttcagta
      241 cctggcaggt aaagatgtag agacttgctg caaacaagaa gaccatgagc gatactgaat
      301 tccattatat gataaagaat cttgcacgat gatgccaaca agatcttgta gtcttgtcta
      361 taccttaact ccaaacattg ttacaaagat acatttcatc ttgtatagtg ggaagtaagt
      421 aattcatgat cacctactca tagatagatt atttccaatt actccaaagc gcaattttta
      481 cctaggcgat gtacctttga taaaaagtta taacggtatc attatatcta tgtgctcaat
      541 ggtaggctaa cgctaaaagt agctccttta ccatccggat tattctcagc ccagatcttt
      601 cctccatggg cttctacaat gctttttgat atgaacaaac ctaaaccaat acctcctgct
      661 tctgattttg taacaaattt tccaaataat ttagggaata tttcagggtc tatgccagct
      721 cctgtatctt ttatgctaac aacaatctgc ttaccgtgtt cttcttctct tttattcttt
      781 tccaccacga tactgattat gccttccggg gtgaatttaa cagcattact tagaaggttc
      841 acaataacct gattaagtct tgccttatct gcttctacga aaaaatcttc catacaggtt
      901 aatttcatta ttatattatt atccttttta agttgatttt tggaatctgc aatagcattt
      961 agtatcattt cacttagact gaagggctct ttctttaggt tgagtgactg gctctcaatt
     1021 ctagtaacat ccaaaatatc ttctgaaagt ctatgtaacc tttttgcact tctgatggtg
     1081 gcatttagta attcaagttg ttctgtatct tttattttat tgcgaagaat ttctgttaaa
     1141 ctaagtattg gttgaatagg attacgcagt tcgtgagcgg ctatatcaat aaactctttt
     1201 tgcattttat acgctctttt cagttcttca tttaattttc gttcattcca aagcaattca
     1261 aacaccattt taaatgattc tacactgcgc ttgctgttcg aataaatggt aaatccaatc
     1321 gcttccgaaa attctatagc agtaggctct ctgagttcgg ccctaaggaa tttttcgcca
     1381 tcaactataa gcatgccata tggtgaaata tcgccattca gaattctgat attaggtgca
     1441 ttgatagaca ttctttttac agattctgaa ttgtctgcag ttaagcagca gataatcttt
     1501 acctctacac cgttttgtga tgcatggatc agataatcaa taactcctag cctctccatc
     1561 cttaacagtg ccctgtcatt aggaagaaag aatagtgctt ctttcctcac tgattttgct
     1621 aaatctacaa gaatctgact cgccttttcg ttatcagtaa taacttcaag aaactctggt
     1681 tccagtcctt gttcgatagc tgttatcctt cctttggcat caatgctatt tttccataac
     1741 tcttcaaata aagaattaaa atgatttaca tacaatggtt cattactgat taagaaactc
     1801 tggctcacac taccaccttc catcctttct atcgtaaggg caacttcctt gtctgataca
     1861 ccaaaattca tgggcggcat atttttaata tgtcttacct gtattccaga ctcaaggaat
     1921 acttttacca aatccaggct gtccttatct atgttaataa tccatctcag tccgtcatca
     1981 ttacagccgc cgtcgccaat atcatcatca tcatctgctc ttccatgcct cctcccagct
     2041 atcctcctgt atgagtcaaa gaaatatttg taactcatct gcattccgcc atatgtagag
     2101 caaattgata acctgtcggc actattgttt aaacggctta tctcatggat gatttcatct
     2161 tggctatcta ccagtcttgt tctgacaggc actactccct cctctatttc ccttatcctc
     2221 tgttcagctg gaattgccgt attccacaac gtatcgaata tgtattggcc ctgttccaca
     2281 acttctttaa cgctgctgaa gataacctgt gtcaatggtt ttgcctcttc taggagcgta
     2341 gtagccatat attcggattc actaacagct attcctccct taactccatt caaatgacgc
     2401 agttcatcga ccaatttcat taactccttg caatagtgga tgttgtcgtt tgtaatttca
     2461 gtaaaagccc ttatccttcc tccccttttt cttatgtcaa catatccatt cctatattcc
     2521 ggtatctcta ctactatgga tggagccgta tgatcaaaat aaatatccat tctcttcttc
     2581 acattagaca taaaatatat gcctcttccc acggcgttct ctatcccata cagtatctca
     2641 gatctctttt ctggagaact tgatggagga aggggatgaa tggtcactat aacatagaaa
     2701 atgcaaatct tccttataaa ataagtaagt gaccaatatt atagacgtct ctgcttttca
     2761 agtttcgaca cgtctgcagc aacaactgta gaggacagca atagatatga aggtaaattg
     2821 gataaggagg ctacaagctg ctacagtttt ccctctctta atgtcagcat gccttaattc
     2881 attttttcat tctctactac tggcttccga tgctatccac ctgctgcggc aattgtgtat
     2941 attagaccaa tatcttctgc tctctgtttg tgggttcttc tcttttttgt catctgatgt
     3001 cggcaggctt tctactccta ctcccagtat ttcatgtcct ctaaaaaact ggtcaatgca
     3061 gatgtgcaat aagctatcgg tagtagcagt tgaccatcaa aagctgataa catgattctt
     3121 atttttttac tactgtgctc tttaacgtta gaaatatcgt gtaatactag tcacatataa
     3181 caatgatatc ggactggtta tcccgagtgg gaagttcaat tccaagagga ttctctcgac
     3241 gctatgtact agacttgttg acagaacagc caatgacagg taaagaaatc attgacaagg
     3301 ctattgtaca aagccagggt aaatggaggc cctctccagg ccttatctat cctatgcttg
     3361 gcagattgct tgatgaagga ttggtagatg aattgaatga tggaagatat acaattacaa
     3421 caaagggatt ggatatggct gcaaacgtag aatccattca caacatcttt caaaaacaat
     3481 tagatctggt atccaggata ggtaatgtag gaaagttcat ggctatggat ctgatagata
     3541 gagtatcagt cataggatca acattgagct caaaccttga taaaatgact gacgaagagc
     3601 agaacaagta taagcaattc ctacaaaatg agttaaggaa attagatgaa caagaaagag
     3661 caacagcaga tgacaatgta taatctggtt aatgctgaca tcgatacacc tatggcgtaa
     3721 ttcccgatga ttgcatttaa atataattat taggccatgc aataaaaatt ttgtgacggc
     3781 gtgtatggta gttgcaaatc ggctctattt cttgactgta tacgtcggta acgtttgttt
     3841 actgctgttg gtctactgtt ttatatcagt cataatggat tgtagatggt tgtttaaaaa
     3901 tgcgaagtcc ttatcaaggc tattaatcga aatttttccc gctgcaaaac aggaaaatcg
     3961 catattttag agctatctaa aatataacaa ttccagagat gattgttatg ttgatataat
     4021 ccctacagga acttccgata ttgacgtaat caaagtgttt aattcttatg taaatattcc
     4081 tactcttatt ttaacctctg ataaggatct atatatgaaa ctccttggac gctcgttatt
     4141 tgtaaaggca gagaaaggaa atgatccagt cagaataatt accaagcaga aaacccataa
     4201 cttcaaggtt acatataatt aaacgctata aaagaggacc ggcttaatat tgttacatgt
     4261 agtagtgatt tttaaaggtt atatacagaa taatttgttt acagaatgtg caaaaaaacc
     4321 cttcccttct ccccaaatat aacaatctca ttacgacctt ggacaagagg ccgcttgttt
     4381 gtacttctat cattaaagat aatgaaaaag attatttcga aagcctagta aaagcaatag
     4441 aaggaggatc agatcttgga gaattaagaa tagatttctt taacaaaatc aatcatgaag
     4501 acctatttag gataatgtca aaatcgcaat tacctttaat tgtaactaat cgtaataaag
     4561 aaaatggggg ttcttttgca gcagatgaag aattacggct atctctgctt cgctcaagca
     4621 tagagtcgaa acctgcattc atagatattg aactatctac taatgaaaaa gatcgttcag
     4681 atattattac tacatcgaga gaaaacagtg tcggtgtaat ctgctcatac catgatttca
     4741 ctaatacacc taatcccaag gaaatcttcc gcatttatag gaaagtctgt gagactggtg
     4801 cagatttagc taagttagtt tttacgccac atacaaacaa agatgttcag aatatcttgg
     4861 aagccacaga ctcgctacgg tacgaaagta taccctttac tctctttggg atgggcaaaa
     4921 aaggtcaaat cacacgcatg gtatgcccac ttcttggagc ctctcttaca tactgttccc
     4981 ttactaataa tacacaaaac ggattatatc agctatctct tgcaaatacg aaatcattta
     5041 tgctgcgtat agaaaagcaa ggatggaaat cgatcaagga aaaacgtaag aatttgatga
     5101 ctcttgctat gattgaactc aatgatgaag gtagttatcc tctaaaatcg atcgacaaag
     5161 tgatggcata attcacattc cttttacgca agttatatga tctggccccc tggcgcttca
     5221 ttccatttta tttggaaccg accagttatc gcaacatgtt catggcgatt tggcagagaa
     5281 gagtggaaat cagggccatt gtaaccgttg caggcttcga cgtccatcgg ttcagagctg
     5341 ataacgggct aaatttgatg ttgatggttc tataaagtca taaatgctct gtgtcgcatg
     5401 tatgaattta gagttgaatc agagccagta tttgtataag attaaagtag aatagagcat
     5461 agtataaaat gaagcatgaa aggcaaatag ctacttccgt taataattat tgtagctata
     5521 atcttaacga tcggaggcat tttgtttgca ttcaagatta cacctgaaca aaccataatt
     5581 aattttaatc ctatgactga aacgtctctg aggaacgctc ctagagtaat aaagacaccc
     5641 accccaggag ataatacttt catatatgtc ataaatcagg ttgcagagag aggtctgcag
     5701 gtagccgaga atgacacagc ggtaaagcag ataatgtctg gacaaaaagg tagagcattg
     5761 acaatagctg cagttcagcc tatcgttctc caggacaaca agaatggaaa agtcagttat
     5821 agtcctgtag gtcaaatcat aattacatct aactggcaat atgttgatgg aaaattctac
     5881 tctaatcctg cgaatttcaa tggccttggg aacaaaacag gcgaatcgca tcagcatatc
     5941 tggaatgtat ttgtggatct gaacaaacgc tcagttacag gcataacaga ggaacctgag
     6001 agagtgatga aagagacctt ggagcccaac cttgtattta caggaatgaa tatgttcatg
     6061 cctgatacag tcaaggtaaa acctggttct gtgttaacat gattcaacaa ttccaacctt
     6121 ttccacaaca tagttggcat ctacaagaga aatgcatctg gatcgcagca gatcccagta
     6181 gacagcggta tcatacagcc taat
//
LOCUS       DASQSJ010000024         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_322007, whole genome shotgun sequence.
ACCESSION   DASQSJ010000024 DASQSJ010000000
VERSION     DASQSJ010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322007"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VE223_00495"
     CDS             complement(<1..444)
                     /locus_tag="VE223_00495"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZC20100.1"
                     /translation="MIRLVITGNPGVGKHTSAEFIAEKIQGIKIIDINKFAIDRNAIL
                     RRDRRYGIDVDVKKLSKLIDYELRTTMRDFAIIGHLAPYVLKPSRIDFVVVLRRSPYE
                     LMKTLEQRKYSFEKIREDVASEILGVSLYDALKAFGKDKIVELDTT"
     gene            715..1680
                     /locus_tag="VE223_00500"
     CDS             715..1680
                     /locus_tag="VE223_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HZC20101.1"
                     /translation="MRCSTAVFFGEELAKYGFGGSHPMGSDRIYAFWSKFQSERLDKS
                     NKIVIEKPVLADEKVILSFHENDYVDLVKEASKHGRGFLDTGDTPIFNGAFEASCYVV
                     GSTLKALDLVVRKEDGIDHAFNPIGGLHHSRRSSAAGFCIFNDIGIAILEARKKYGIK
                     RIAYIDIDAHHGDGVYYEFEDDPFIFFADIHEDGHFLYPGTGSELETGLGNAKGTKLN
                     IPLAPGSADNNFIGNFKKIEKFIDDIAKPELIILQCGADSLSGDPIAHLKFTADAHRY
                     AADSLHRLAHNHCNGRMIALGGGGYNSTNIAEAWTSVVKSFVERS"
BASE COUNT          679 a          383 c          408 g          709 t
ORIGIN      
        1 agtcgtgtcc aattctacaa ttttatcctt accaaaagct ttcaatgcat catagagaga
       61 gacgccaagg atttcgctag cgacgtcctc tcttatcttc tcgaaagaat atttcctttg
      121 ttccaaagtc ttcattagct cgtacggaga acgtcgcaat acaacaacaa agtctattct
      181 agatggtttt aacacatatg gtgctagatg tccgatgatt gcaaaatctc tcattgttgt
      241 tctgagttca taatcgatca atttgcttag tttttttacg tcaacgtcta ttccatatct
      301 tctatctctt ctcaaaatag cgtttctgtc aattgcaaat ttattaatat caattatttt
      361 tatcccctga attttttctg caataaattc tgcacttgta tgcttcccaa cccccgggtt
      421 gccggtaatg acaagtctga tcatcgattt cacatatttc acttacacat attttatttg
      481 actttgaact atctatagat tattagcaga ataactcaat aaatataatt atggtattat
      541 atatttatat ctatcctttt actaatggaa ctgaagtagc aaatggaaga aggaactatc
      601 gatgatgaca atgtcatatt tttattcatg tgatatgcct tcgttacaaa tgagtagcag
      661 tataattata gtatatttct aaatgcttat ttctgtgtct ttggagttac aagtatgcgt
      721 tgttctactg ctgtgttttt tggagaagaa cttgccaaat atgggtttgg tggatctcat
      781 cctatgggct cagatagaat ctatgccttc tggtcgaaat tccaaagtga gagattagat
      841 aaatccaata aaatcgtaat agaaaagccg gttttggctg atgaaaaggt tatactatca
      901 tttcatgaaa atgattatgt ggatcttgtt aaagaggctt caaaacatgg acggggtttt
      961 cttgatactg gagacactcc tatatttaac ggtgcattcg aggcctcttg ctatgtggtt
     1021 ggctcgactc taaaggcatt agatctggta gtaaggaagg aagacgggat agaccatgct
     1081 tttaatccga ttggtgggct acaccattct aggagaagtt ccgcagccgg tttttgtatc
     1141 tttaatgaca taggtatagc aattctggaa gcgagaaaaa agtatggcat aaagagaatc
     1201 gcctatatcg atatagatgc tcatcatggc gatggtgttt attatgaatt cgaagatgat
     1261 ccttttatct tttttgcgga tatacacgag gatggtcact ttctctatcc aggaactggt
     1321 tcggaattag agacaggttt aggcaatgcg aaaggaacca aattaaatat acctttagca
     1381 ccaggatcag ccgataataa tttcattggt aatttcaaga aaattgagaa atttattgac
     1441 gatatagcga agccagaatt aattatacta cagtgtggtg cagactcctt aagcggcgat
     1501 ccaatagcgc atttaaaatt tacagcagat gcacacaggt atgcagcaga ctcattacat
     1561 aggcttgcac acaaccattg taacggaaga atgatcgctc taggtggcgg aggatataac
     1621 agtacaaaca ttgctgaagc atggacatca gttgtaaaat cctttgtgga aaggtcataa
     1681 atagggtttt acaaaaatag atgagtagtt atcgctgtcc catatgcaat tgccgaaaaa
     1741 caagaagaca ttacttttcg aattaatgtt cgatggtgct tgacgattct gaatatatgc
     1801 ggcccgctct tacaaccttt gcctttagag gtcccacact atcagttcgt tcgccgcacc
     1861 gtcaagcatg tgttttatat gacagccata atataaaaga ctcaataatt gtataaagat
     1921 tgtctatcta taatatccat agattaaatt aaatggatca taattaatat ctatatatat
     1981 tcatctgctt cagctattat tgcaatcata taaataggca tgtcgcttct cctcaaaact
     2041 atgttgaacc tatatacgac cttatatatg ttagtctaat gtgtacactg acatttttga
     2101 aacaaacagt tttccgatga taatagcatc ctaaacacat ggaaaaggcg gtataaagtt
     2161 tgtaacagga ctatcagag
//
LOCUS       DASQSJ010000025         4873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_83313, whole genome shotgun sequence.
ACCESSION   DASQSJ010000025 DASQSJ010000000
VERSION     DASQSJ010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4873
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83313"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(159..1250)
                     /locus_tag="VE223_00505"
     CDS             complement(159..1250)
                     /locus_tag="VE223_00505"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HZC20102.1"
                     /translation="MTTTQFNSETRSQYKAKAYAAASAKSPLAPITIPRRDPEEHDVQ
                     IEILFCGICHSDFHTVRSEWSAMPTIYPCVPGHEIVGRVIKVGSAVTKFKPGDIAAVG
                     CMVDSDGSCPDCQADLEQYCPHMTLTYNSPDVHLGGVTYGGYSDSIVVKEHFVLHVPS
                     NLNLAGAAPLLCAGITTYSPMRHWGVTKGKKVGVVGLGGLGHMAVKIAHALGAHVVVF
                     TTSPNKKEDALRLGADEVVISRNTDQMNRHVNSFDFILDAVSAEHDINSYLRLLRRDG
                     NMTLVGAPDKPHAVAAFSLIMKRRSLSGSNIGGIAETQEMLDFCGKNNITADVEVIPI
                     QKVNEAYERLSRADVKYRFSIDMSSLKSQ"
     gene            1703..1849
                     /locus_tag="VE223_00510"
     CDS             1703..1849
                     /locus_tag="VE223_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20103.1"
                     /translation="MITPQDADELRQILEEKNKAIDVNDVLALFAIGGLLLILAGFVL
                     GNNR"
     gene            complement(2320..4317)
                     /locus_tag="VE223_00515"
     CDS             complement(2320..4317)
                     /locus_tag="VE223_00515"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HZC20104.1"
                     /translation="MNNKKVNDKQQRQIQRPYPFERFASVRSYTSFDFLKKDPSWLIY
                     IADTSGQFNVWRQRSILGSDGEPYTSYQLTNFIDEAVRHIFPSPVDNSIIFFADHQGT
                     ENFQIYKIEDAFYSWPEPLTQNLKVRYEWGAECFSHDGRYIAYGSNEDNPSNMLVYIK
                     DITNISSSSSSNDETFCVTNKEGWYIPGYWSPDNKKLNCSQLVTLTDYVIWLLNIEDG
                     EMVKVIPSDDKMQKGRYTVGPWSPDGKGFYVISDLEREFANLAFYDIYKSKLEWILTP
                     QHDIELVDLSSDGALLVWTENIDGYSSIFTKNLRNGQVQEITDLSSYGVIEDLKLSPN
                     RKRISIMMTTSTSPSDIYVVDIENTKEVGFESNKEKGKTNVQKLSHSFLGNLSENVLI
                     KPELIKYKSFDGLEISAILYKPKEEGRNIVVDNNKPTKFGAILSIHGGPTAQERPLYD
                     YSGLYQYLANNGLVVIAPNFRGSTGYGKSFEKKIYHDWGGDELRDLEYAVKWLKSQKW
                     IDTNRIGVFGASFGGFATLSCITRLPHYNWKAAVDIVGPSNLVTFAKAVPEHWKRFMG
                     ELVGDPEKEEDFLKKRSPITYVDSISPITKLLVIQGANDPRVVKNESDQIVDRLRTKN
                     MDIEYMVFEDEGHGFTKYGNAIKALKRSAEFLVEKLCYTAQ"
BASE COUNT         1414 a          955 c          894 g         1610 t
ORIGIN      
        1 acagatatgg gtggtcatgg tggtcgtcct gtacatgaag gtgcaaaagg aatagtttgg
       61 gctgctacac tgccagatgg tggtcctggt ggaggatttt tttgtgatgg caaagctgta
      121 ccatggtgaa tagaatggag atcttttgcc atgccacatt actgagactt aagagatgac
      181 atatcaattg aaaagcgata ctttacatct gccctggata gtctctcgta agcctcatta
      241 actttctgga ttggaatgac ttctacatca gcggtaatgt tatttttgcc gcaaaagtca
      301 agcatctcct gcgtttcggc aatacccccg atgttcgagc cagagaggct gcgacgcttc
      361 attataagac taaaggctgc tacagcgtga ggcttgtctg gggcgccaac gagagtcatg
      421 ttgccatcac ggcgtagtaa tcgcaggtat gagttaatat cgtgctcagc ggagacagca
      481 tcgaggatga agtcgaagct gtttacgtgt ctgttcatct gatcggtatt tctcgaaatg
      541 accacctcgt ccgcaccgag gcgaagcgcg tcttcttttt tgttaggcga agtagtaaac
      601 actactacat gtgctccaag ggcatgagca atctttactg ccatatgacc gaggccaccg
      661 agacctacca caccgacctt cttacctttg gtgacacccc aatgtcgcat gggcgagtat
      721 gttgtaattc cagcacataa gagaggcgca gctccagcga gattcaggtt ggaaggtaca
      781 tgtaggacaa agtgctcttt aactacaata ctgtcagaat agcctccata ggtgacacct
      841 ccaagatgca catctggaga gttgtaggtg agggtcatat gcggacaata ctgttcaaga
      901 tccgcttgac agtcagggca ggaaccatcg gagtcaacca tgcagccgac tgcagcaata
      961 tcaccgggct taaacttcgt gaccgcagaa ccgaccttaa tgacacggcc gacgatctca
     1021 tgtccgggga cgcatgggta gatagttggc atggcgctcc attcgctacg gacagtgtgg
     1081 aagtcagagt ggcaaatacc gcagaaaaga atttcgatct gaacatcatg ttcctctgga
     1141 tcgcgtcgtg ggattgtgat tggggcaagt ggcgatttgg cacttgcagc agcgtaagcc
     1201 tttgctttat actgactgcg tgtttcagag ttaaattgcg ttgttgtcat ggagggctta
     1261 gtgcgatata gtataaagcc attttagcca aacaagcgat ctgcttctcc attttttacg
     1321 gtcgcaatta caacaaatgg aacaactaca gctaatgtta taatcccctg tatatagtgg
     1381 tgtatctgga ggatcttgct tagatcctaa tgtacatacc aatacgccat aaaaacattc
     1441 caaagttaat ttatgtcaat ttattgatcg ctttctacct aacgataaaa ctttagtgcc
     1501 aatttaaatg catcaaatat gtcattatag gacgttgctt cttatccaat cggccatctg
     1561 tatcatcagt actactcaca taactagata taaatattga attgcaaatc attattatac
     1621 tctgacttct tatttcttat tatccttttt ctgatgcact aagctactac tactactata
     1681 ggctttagga ttgcgaaata gaatgataac cccacaagat gcagatgaat taaggcaaat
     1741 tctagaagaa aagaacaaag caatcgatgt taatgatgtc ttagcgctct ttgctatagg
     1801 tggcttatta cttattctag ccggtttcgt tttgggaaac aatcgatgac agctagtctg
     1861 aacatgtttc gtcgtcagtc ttgattaaag tttttactac taaatacaca tattaagatt
     1921 agaccagcag tttttttgtt atcatgccgc tgctgtcatt acgcggatag atatatccgt
     1981 aaatacaata aatctactta aacaaacgta aggtgtgaat aaatggaata gcccaagtag
     2041 tagaaacagc tttaacaggg taatagtata cgatataata catactggta ttattgttaa
     2101 ttggttctat atcaactcct tttccattaa tagcatcctt gaaacttgag tagtcattat
     2161 taggactaca attaccctaa aggtgagaat attgttcgat tctaacacta acattaataa
     2221 ctaaactatc agtttttggt cagttgataa aaataagagg ttgtttcact ttcacataga
     2281 atactaaatc atcgcttagc tttatgtttc tgcttggtcc tattgtgcag tataacataa
     2341 tttctctact aagaattctg cagatctctt cagagctttt atagcgttgc catatttggt
     2401 aaaaccatgt ccttcgtctt caaaaaccat atattctata tccatatttt tagttcttaa
     2461 tctgtcaact atttggtcag actcattctt cactactctt ggatcattgg ctccttgtat
     2521 tacaagtagc ttggttattg gactgataga gtctacgtag gtaataggag atcttttttt
     2581 gaggaaatct tcttccttct ctggatctcc tactaattct cccataaatc gcttccagtg
     2641 ttctggtact gctttggcaa aggttacaag attacttgga cctactatgt ctaccgctgc
     2701 tttccagtta taatgtggca atctagttat acagcttaga gttgcaaatc ctccaaagct
     2761 agcaccaaat actcctattc tattggtgtc aatccatttc tgtgatttca gccattttac
     2821 agcatattct aagtccctaa gttcatctcc accccagtca tggtatatct ttttctcaaa
     2881 gcttttgcca taacctgtac tcccgcggaa attaggagct ataactacta acccgttatt
     2941 tgcaagatat tgataaagtc cagagtaatc atacaatggc ctttcctgag cagtgggacc
     3001 tccgtgaatt gataatatag ctccaaattt tgtaggttta ttgttgtcaa caacaatgtt
     3061 gcgtccttct tcttttggct tgtacaaaat tgctgagatc tcaagtccat caaaactttt
     3121 gtatttgatt aattcgggct ttatcaacac attctctgat agatttccca aaaatgaatg
     3181 actgagtttt tgaacattgg tttttccttt ttctttattg ctttcaaagc ctacttcttt
     3241 cgtattctca atatctacaa catatatatc agatggagag gttgaagttg tcatcataat
     3301 actaattctc tttctattag gagatagttt tagatcttct atgactccat atgacgataa
     3361 gtctgtaatt tcttggactt gtccattcct taaatttttg gtaaatatac tactatatcc
     3421 atctatattt tcagtccata ccagtaatgc accatcagaa ctaaggtcaa ctaattctat
     3481 atcgtgttgt ggtgttaata tccactcaag ttttgattta tagatatcat aaaatgctaa
     3541 atttgcaaat tctctttcta aatcagatat tacatagaaa ccttttccat cgggagacca
     3601 tggccctaca gtatatctgc ctttctgcat tttatcatct gatggtatga cttttaccat
     3661 ctcaccatct tctatattaa gaagccaaat gacataatca gtaagagtaa ctaattgaga
     3721 acaatttagt tttttgttat ctggagacca atatccaggt atataccatc cttctttgtt
     3781 ggtaacacaa aatgtttcat cattgctact actgctgctg ctaatattag taatatcttt
     3841 tatatacaca agcatatttg atggattatc ttcatttgat ccatatgcta tgtatctgcc
     3901 atcatgacta aagcattctg ctccccactc ataccttact tttaaattct gagttaacgg
     3961 ttctggccaa gagtaaaagg catcttcaat cttgtaaatt tgaaagtttt ctgttccctg
     4021 atgatcagca aagaaaataa tgctattgtc taccggagag ggaaaaatgt gtcgtaccgc
     4081 ctcgtcaatg aaattagtta actgataaga agtataaggt tcaccatcag aaccgagtat
     4141 agagcgctgc ctccatacgt tgaactgtcc gcttgtatca gcaatatata tcagccatga
     4201 tggatccttc ttgaggaagt caaaacttgt gtagcttcta acagaagcaa atctttcgaa
     4261 tggatatggt ctttgtattt gacgttgttg tttatcattg actttcttat tattcataat
     4321 atatttttca atcaagtaat attagtaagt aaatacatat acattccgta aacactagct
     4381 tttcaaataa tacgcggttc ttatagctgg gaaactaacc agtattaaaa ataaacggta
     4441 atcaatcaat cattagcctc atttctttta catttagttc gtattcatat agaaaaaaga
     4501 tgatattaaa aaattgaatg ctataatgaa gatacttttg ctttacagat cagcttgctg
     4561 tatcacatcg atgaagaacc tgccgtaatt cttctgttaa ttattcgaag ttctggtcgg
     4621 ccacgatata tgctgcttgt atgttttggt agatagaggt tttccatctt ccattatggc
     4681 accaatttaa taggtagata accattctta attgcaatag agcatacttt actctaaaat
     4741 taaaaccgca atctaatgtt gtaactgatt tgcatttatt cagccatttt tttattatag
     4801 taaaggcatt gtcataggat attttttgat attaatgagg tacggtgcaa gactcaggac
     4861 tacagcattt ttc
//
LOCUS       DASQSJ010000026         3541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_202882, whole genome shotgun sequence.
ACCESSION   DASQSJ010000026 DASQSJ010000000
VERSION     DASQSJ010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3541
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_202882"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..1215)
                     /locus_tag="VE223_00520"
     CDS             complement(136..1215)
                     /locus_tag="VE223_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20105.1"
                     /translation="MINSKAVPQRNANQIKTKISSPTLNHSDATKRSNGLYVYATCPI
                     DRTAPYIPTTSKYNKSNIHSYPEDEKNDHIVQKHAKTICNITRFLDFSESGSTIKARQ
                     YQFPRVTANDYGDIPFIFPMPLQDMHSDSLDGSTHSNSKKSPHLKNGIPSNIMQKQRT
                     ILRAILIPDKKIIEKTKVADSSKNSTTRFEGASSHPTLSSNNISKGILTLQYDHQNYP
                     ISYEITGAGNKLNDINVENDNTTIITRVTSKSNGILTIQLPGDSMINFKKPKNNQQDS
                     FAVFEDGQYYPYNEGQYIHGVRKEMVYFEKGTEQIEILTSHASPEFGMTFPIAFSLAV
                     ISLMVVRMYFLRCIRQKRHDAHTHF"
     gene            1535..2023
                     /locus_tag="VE223_00525"
     CDS             1535..2023
                     /locus_tag="VE223_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20106.1"
                     /translation="MDDKQKLEEKIGEALGLEMAAQKAVEEFESKGLLNDHGMKGRLE
                     SMKKEANNHQIQIEQLVQSLSKSRELDHSRIQSKANETENKISQMMKIYVGDQADSSE
                     AVEFLCFAEGGEVTHYEILNAMAKKVKDRKFSTRIRTILKEEQRHLKLCTRLAKQSII
                     NE"
     gene            2198..2617
                     /locus_tag="VE223_00530"
     CDS             2198..2617
                     /locus_tag="VE223_00530"
                     /inference="COORDINATES: protein motif:HMM:NF012304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase-like protein"
                     /protein_id="HZC20107.1"
                     /translation="MVTVYTDASGVPHNIYGYYIPETNEEKFIRSKFGLDSVEAEFMA
                     IIYALNSNTVRNSKQSIVYSDSESVVDLIQRKVQMRKGSIARLLTIQILNIIDNMENK
                     PFFVWIPRERNLAGILIEDEVPRKINKGMLFKDSLVR"
     gene            complement(2803..>3541)
                     /locus_tag="VE223_00535"
     CDS             complement(2803..>3541)
                     /locus_tag="VE223_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HZC20108.1"
                     /translation="VICLHASVDLLNDYWDYKRGTDVITRRTKFSGGTGVLPEKLLRP
                     KTVYIAGVIFMMLGALAGIYFVVIRGITIAVILGFAIVTVYLYSINIVNAGLGEIFVA
                     IKGIMIVLGTFYIQTGVVDPSAIFIGVIIGILSASVLFVNSFPDYDADRYTGRRSLLT
                     IIGKQNGSRLFPVPVLIPYILILAGIFLGYTKFVSLACLASIPYVIKAIKDIGKYEDL
                     SQFVPVMAATVMYARITGFMLAISLLF"
BASE COUNT         1180 a          594 c          672 g         1095 t
ORIGIN      
        1 atcaagcaat gtttcttttg catataggag tgatctggct ccggtatctg aagataaagc
       61 accaaatagc agcgttatgc aaaaagatac tcccttcatt ttaccgttcc catgaagttg
      121 aatcttaatt taatattaga aatgtgtatg cgcatcatga cgtttttgcc tgatacatcg
      181 cagaaaatac attctgacta ccattaatga tataaccgcc aaagaaaaag caatgggaaa
      241 tgtcatacca aattccggag aagcgtggct ggttaagatt tcgatttgtt ccgtaccttt
      301 ctcaaaataa accatttcct ttcgtacgcc atgaatatat tgaccttcat tgtatggata
      361 atactgtccg tcttcgaata ctgcaaagga atcttgttgg ttatttttcg gttttttaaa
      421 atttatcatt gagtctcctg gaagctgaat cgtcaatatt ccatttgact tagatgttac
      481 acgtgttatg atggtcgtat tatcgttctc aacgttaatg tcatttaatt tatttccagc
      541 gccggtaatc tcatagctga taggataatt ttgatgatca tattgtaaag tgagtattcc
      601 tttacttata ttattacttg ataaagtagg atgcgatgat gctccttcaa agcgggtagt
      661 tgaatttttg ctagaatctg ctacttttgt cttttcaata atttttttgt ctgggatgag
      721 tatagcccta agtatggttc gctgtttttg cataatattt gatggaattc cattctttaa
      781 atgagggctt tttttagaat ttgaatgggt cgacccatct aaactatcac tatgcatatc
      841 ttgcagaggc ataggaaata tgaagggaat atcaccataa tcattcgcag ttaccctagg
      901 gaattgatat tgcctggctt ttattgtgct ccctgactcc gagaaatcaa ggaaccgtgt
      961 aatattacag attgttttgg catgtttttg aacaatatga tcattcttct cgtcctcagg
     1021 ataagaatgt atatttgatt tgttgtattt gcttgtggta ggtatgtatg gagcagttct
     1081 atcaattgga caagtagcat atacgtagag gccattggaa cgttttgtcg catcactatg
     1141 attcaatgtg ggcgatgaaa ttttggtttt tatctgattt gcgtttcgct gtggaactgc
     1201 tttagaattg atcaaggaaa tagaaaggaa aagtattgta aaaaaaaaat acaactgtca
     1261 ttatctttaa ttcgttgatg ttaaactttt tcaatggtct gtagtgtata tccaagataa
     1321 taaattagag gagaaagaac attgatagat tacataaaaa gagtatcata gaaattaatg
     1381 ttccttgtta aaggtataac catgtggaga aggtaggatc tctttgtatg ggattgtgca
     1441 tacttacttg catctaccaa gttattaggg acacaacaac aatatcaaac catgcctatt
     1501 cctttataaa tatcaggcat caagtacaag attcatggat gataagcaga aacttgaaga
     1561 aaaaataggg gaggctcttg gtttagagat ggctgcgcaa aaagcagttg aggaatttga
     1621 gtcaaaagga ttattgaatg atcatggaat gaaaggtaga ctagaaagca tgaagaagga
     1681 ggctaacaac catcagatac agattgagca attagttcag tctttgtcta agtcaagaga
     1741 attagatcac tcacgtattc aatccaaggc aaacgaaact gaaaataaga tatctcaaat
     1801 gatgaaaata tatgttggag atcaggctga ctcttctgag gcggtagaat tcctatgctt
     1861 tgcagaagga ggagaagtaa cacattatga gattctaaat gcaatggcaa agaaagttaa
     1921 agatagaaag ttctccacta ggatacgaac aatcttaaag gaagagcaaa ggcatcttaa
     1981 attgtgtacc agattggcca aacagagcat aattaatgaa tagacttctc atggaggcca
     2041 atttaagaag cacctttcgt gctttatatt ttctttaacc atctatcgtt ggctgctcct
     2101 cctattaaaa tatacttatt gagaaccatc tgaaccatgg aaagaaacct taacatattt
     2161 ggaaatgaga aatagagatc aaaggtaatt taaaataatg gtaacagtct acacagatgc
     2221 ttctggtgta cctcacaata tttatggata ttatatccca gaaactaacg aagaaaaatt
     2281 tatccgaagt aagtttggac tcgattcagt agaggcagaa tttatggcta ttatttatgc
     2341 attgaatagt aacaccgttc gaaattccaa acagagcatt gtctattcag attctgaaag
     2401 tgtagttgat ttgatccaga gaaaagtaca aatgcgtaaa ggtagtatag ctaggttact
     2461 cacaattcaa attcttaata taatagataa tatggaaaat aagccattct ttgtatggat
     2521 tccccgtgaa cgtaacttag ctggcatatt aatcgaggac gaagttccaa gaaaaataaa
     2581 taaaggtatg cttttcaaag actcgcttgt acgatgatat atacatcata gaaatggtga
     2641 atctcaactt tcgctgcttg aacttttgat tatagttaaa tctgtgagaa cgtgaaccca
     2701 tatggagata tttaattttt gaagctaaac atgaagcaat ctcttgttct tgaaaggtga
     2761 actacgaaat ctgttacaga tcataattat tgaaataact gcttagaata ataagctaat
     2821 cgccaacatg aagcctgtaa tcctcgcgta cataacggtt gcagccataa caggcacaaa
     2881 ttgacttaga tcttcgtatt tacctatgtc tttgatggcc ttaataacgt atggaatgga
     2941 ggcaaggcaa gccaaagata caaattttgt atatccaaga aaaatgcctg ctaggatcaa
     3001 aatatatgga atcaagactg ggactggaaa taaccggctt ccattttgct tccctattat
     3061 tgtgagaagc gaacgtctac cagtatatct atctgcatca taatcaggaa acgaattaac
     3121 aaacagaaca gatgccgaca aaattccaat aataacaccg ataaagattg cggatggatc
     3181 aactactcca gtttgaatgt aaaatgtccc aagtacgatc ataatgcctt tgattgccac
     3241 aaaaatttcg cccaaaccag cattgactat gtttatagaa taaaggtaaa ccgtcactat
     3301 tgcaaatcca agtataactg caatcgtgat ccctctgata acaacgaaat agatacccgc
     3361 gagagctcct agcatcataa aaataactcc tgctatgtag actgtctttg gtctcagaag
     3421 tttttcaggc agtacacccg ttcccccgct aaacttagtc cttctagtaa tgacatcagt
     3481 gcctctctta taatcccaat agtcatttag caaatcgacg cttgcgtgaa ggcatattac
     3541 a
//
LOCUS       DASQSJ010000027         2438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_280412, whole genome shotgun sequence.
ACCESSION   DASQSJ010000027 DASQSJ010000000
VERSION     DASQSJ010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280412"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..427
                     /locus_tag="VE223_00540"
     CDS             <1..427
                     /locus_tag="VE223_00540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20109.1"
                     /translation="ITTNFFLSEFEVAAFVAQNTNKNNSNSNNDVTIISGPAYSWIFK
                     YIYGDDHVFSHYRDSSQMVQTKKIISIVDNPYRHIISNVLSKNEVEDKNQIQRLQKIY
                     NNTDTIATFQDNYNPLDYRRYPYINIGDCLFNIEVRANY"
     gene            complement(535..1428)
                     /locus_tag="VE223_00545"
     CDS             complement(535..1428)
                     /locus_tag="VE223_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20110.1"
                     /translation="MLDPKQSSKITMMIVVAIVVILVVFISTYATPPRPVYTMLFSSA
                     SNLSHSGNFSISLPDIATYGNNVYVVWTGHNAGSSNIYFKASKNSGASFASQENLSSN
                     NTGSSQSPRIAVSHNNVYVVWEYNIDGHHNILFKKSTNSGASFASQENLSSNNTGSSF
                     SPLVSTTGNDVYVIWQDVTDRNSDIYFKASKNGGASFGNTINLSHDVGFSGSPQVAAN
                     GNDAHVVWQGISAGNSDVYFKSIRGGNTLANTITLSHDVGFSGSPQIIISVHNIYLVW
                     TENISGHSDVYFKRARWSMIF"
     gene            complement(1764..>2438)
                     /locus_tag="VE223_00550"
     CDS             complement(1764..>2438)
                     /locus_tag="VE223_00550"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HZC20111.1"
                     /translation="FPLNLYYAYGIRNSFGMDFDPLTGKLWDTENGPSFGDEINLVEA
                     GFNSGWIQVQGIWKPNKPNNYFVGNVLLHPDNLTDFGGKGKYRAPEFTWYNTVAPTAV
                     KFLNSDKLGRQYQNDMFVGDFDNGNLYDFHLNKNRTGLLLGAPLSDKIAYSDNELQKV
                     IFGHGFGGISDIEVGPDGYLYILSHNAGGDDCTPVFPNVPCVSYSSQAQGGIFRIVPV
                     NSPKVQ"
BASE COUNT          737 a          487 c          400 g          814 t
ORIGIN      
        1 aataacaact aactttttcc tctctgaatt tgaagtcgca gcatttgtcg ctcaaaatac
       61 taacaaaaat aatagtaata gtaataatga cgtaacgata atctcaggac ctgcttattc
      121 ttggatattc aaatacatat atggagatga tcatgtgttc tcacattatc gagattcctc
      181 tcagatggtc caaacaaaaa aaattatttc gatagtagat aatccatata gacatatcat
      241 atccaatgtt ttgtcaaaaa acgaggtcga agataaaaac caaattcaaa gattgcaaaa
      301 gatctataat aatacagaca caatagcaac attccaagat aattacaatc cccttgatta
      361 tcgtagatat ccctatatca atatcggtga ctgtctcttt aatattgaag ttagagcaaa
      421 ttactgagtc tctagataag tgagatgtct cgataaatat ttcgttcttt gggtaacact
      481 gctgccttgt catacctatg tatctacttc ctgtgcaatt ctagctgcat gaaattagaa
      541 tatcatgctc catctggctc gcttaaaata tacgtcgcta tgcccagaga tattttctgt
      601 ccatactagg taaatgttgt gtaccgaaat tattatctgt ggagaacctg aaaaaccaac
      661 atcatggctt aaagtaatag tattggcgag ggtgtttcct cctctgattg acttaaaata
      721 tacgtcgctg tttccagcgc taataccctg ccataccaca tgtgcatcat tgccatttgc
      781 agctacctgt ggagaacctg aaaaaccaac atcatggctt aaattgattg tattgccaaa
      841 gctagctccg ccatttttgc ttgctttaaa atatatatcg ctgttcctat cagtaacatc
      901 ctgccagatc acatatacat cgttaccggt tgtggatacc agtggtgaaa aagagcttcc
      961 agtattgtta ctgcttaaat tttcttgact tgcaaaacta gctccactgt ttgtactttt
     1021 cttgaatagg atattatggt gtccatcaat attatactcc caaacgacat agacattatt
     1081 atgcgatact gctatccgcg gagattgtga gcttccagta ttgttactgc ttaaattttc
     1141 ttgacttgca aaactagctc cactattttt gcttgcttta aaatatatgt tactacttcc
     1201 agcattatga cctgtccaca ctacatagac gttattgcca tacgtagcga tatcaggcag
     1261 agatatggag aaattgccac tatggcttaa gttgctggcg gagctaaaga gcatagtata
     1321 taccggacga ggcggggttg cataagtcga aataaaaaca acgagaatta ctacaattgc
     1381 taccacgatc atcattgtta tctttgatga ttgttttgga tccagcaaga agagttttat
     1441 gaatatgccg tttaataagc ggtattatga taataatgtt atcccttttt ttgctcgtaa
     1501 ttctattcta tctatgagat catgatttat cagttcttgc aaattctaaa ccttgttatc
     1561 atagtctata atattcttct tcttcttctt agaaaggatc agtgttcttt ccgtagtctt
     1621 agatgatctt ttttgttgtt tttagataag atcatgtttc tcagacagtt cgctattttg
     1681 caaacttcct acatcaaatc ttgctttacg ttaaggcaac cacttatttc ttcttttatc
     1741 atcctttgta tttgcttctt ttcttattgc acctttggac tatttacagg aacaattcgg
     1801 aagatacctc cttgcgcttg ggaactatag gaaacgcaag gcacatttgg gaatacgggg
     1861 gtgcaatcat ctccaccagc attgtgcgaa agaatgtaaa gataaccgtc tggaccgacc
     1921 tctatatcac taattccacc aaatccatgt ccaaatatta ccttttgaag ttcattatca
     1981 ctgtatgcta ttttatcaga aagtggagct ccaagcaata atcctgtcct atttttattt
     2041 aggtgaaaat cataaaggtt tccattgtca aaatcgccta caaacatgtc gttttgatat
     2101 tgtctaccta atttatcaga gttgaggaac tttacggcag ttggagcaac tgtattgtac
     2161 cacgtaaact ccggagctcg atattttcct tttcctccaa agtctgtcag attatctgga
     2221 tgcaagagaa cattcccaac aaaataatta tttggtttgt ttggtttcca tataccctgt
     2281 acctgaatcc atccactgtt aaagcctgct tctacaagat taatctcatc accaaaactt
     2341 ggaccatttt cagtatccca taatttgcca gttaaaggat caaagtccat tccaaagcta
     2401 ttccttatac cgtaagcata atacaggttt agaggaaa
//
LOCUS       DASQSJ010000028         3450 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_41606, whole genome shotgun sequence.
ACCESSION   DASQSJ010000028 DASQSJ010000000
VERSION     DASQSJ010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3450
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41606"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..1314
                     /locus_tag="VE223_00555"
     CDS             91..1314
                     /locus_tag="VE223_00555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20112.1"
                     /translation="MKDRVHRDSERYDETFRVGVEVEGCLLDNKGVPVNAAPLIEELK
                     GTLHELDFEYGICQFEYKTPPTPMDCLLDLNNLFEEFIERLDRTVQKVYKETVFPVFL
                     GGNPSPEILNDYDDGLRLITNKPRYNKLAHWQSEITDVEIEGQKFKAFQIPSAIQGFH
                     LHLQGQNPVHTAQMFNHLLNLIPSAIILGANSRLLAGKIFSMHEPRIHLYDQSELQNS
                     GFPSITRYLDGVEDYVDYIISRDKIIAKDYFELEKERHDDLRIRLNSGFYRVETRIMS
                     IQPSPKALMALTEFFIGYLYRAIHEDRRLRPLSSLREERLSVVRSGFNAKTHFSIVET
                     IRNQLDFARRGLSDLGIKPEFLSVLDHRLESRNTPGEYVAKLWQEKFNGSLEQTIFEV
                     ISDIWERTKNNHPIT"
     gene            1399..2820
                     /locus_tag="VE223_00560"
     CDS             1399..2820
                     /locus_tag="VE223_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZC20113.1"
                     /translation="MNIDKMNNDDAITDLQDLIRQPSVSAKNQGLVACANLVVRIMRK
                     AGIDTKLLYIDDALKAEKEGISSPPLVYGEVRSKSNPNGKTILFYNHYDVQPVEPIEL
                     WEEDPFSGKVQGNYIFGRGSADDKGELITRIKAVEYYLNHTGDIPCNVKFIVEGEEEI
                     GSIHLKKYLSLYKEKFECDGVIWESGFVDASGRPIISLGQKGILSVEFISRGPSRDAH
                     SSLAVLIENPAWNLIRVLNSLRDDKGKILIKDWYNEARDFTTEELYFINQEPFDEEEL
                     KKEYGITNFLNNAKGIEVRKAFAGMPTCNISGLVSGYVGKGSKTMLPAIATAKVDFRL
                     APDMIPEVQFKRLRKHLDEHRLWGNEDYETELKFLDGQPSARTSINNSFVNIVKEAAV
                     EVYGDVIVNVSSAGTGPMYYFAKLLGVPSVCIGGTDLSNRSHSPNEYMRIDSLHKTIK
                     CITIILEKFARTNTNVFKSKNIL"
BASE COUNT         1148 a          575 c          678 g         1049 t
ORIGIN      
        1 cgggtatata agtgatatta acaacatacc atgatataat cgttgaatct gctcccaaac
       61 aactactcta tcctaaaaca ggcacaagag ttgaaggata gagttcatag agactctgag
      121 cggtacgacg aaacatttag agttggagta gaagttgaag gctgtttgct agataataaa
      181 ggagttcctg ttaacgcggc tccgttaatt gaagagctaa aaggaacact acatgaactt
      241 gattttgagt atggcatatg ccaatttgaa tacaaaactc cacctacacc tatggattgt
      301 cttcttgatc ttaataattt atttgaagaa tttatagagc gcctagatag aacggtccag
      361 aaagtataca aggaaacggt atttcctgta tttctagggg gtaatccatc tccagagata
      421 ttaaatgatt atgatgatgg tttacgattg atcaccaata agccaagata taacaagctt
      481 gctcattggc agagtgaaat cactgacgtt gaaattgaag gccagaaatt taaggcgttt
      541 caaattccat ctgctattca gggtttccat cttcatcttc aaggacagaa tcctgttcat
      601 acagcacaaa tgttcaatca tttattgaat ttgataccat ctgccatcat acttggagct
      661 aatagtcgac ttcttgctgg taaaatattt tctatgcacg aacccagaat tcatctatat
      721 gatcagtcag agctgcaaaa ttcgggcttt ccaagtatta ctagatatct agatggggtt
      781 gaagactacg tagattatat tatttctaga gataaaatta ttgcaaagga ttactttgaa
      841 ttagaaaagg aaaggcacga cgatcttcga attcgtttaa attcaggttt ctatcgtgtt
      901 gagaccagaa ttatgtccat acaaccaagt cctaaagcat taatggcatt gacagagttc
      961 tttataggct atctttatag agctattcat gaggacaggc ggttacgacc actttcttcg
     1021 ttaagggaag aaagattgtc tgtcgtcaga tcaggattta acgccaagac gcactttagt
     1081 atagtagaga caataagaaa ccagctagat tttgcacgta gaggattatc tgatttaggc
     1141 ataaaacccg agtttctaag tgtactcgac cataggctag aaagcagaaa tacccctggt
     1201 gaatatgttg ccaagttatg gcaggagaaa ttcaatggtt ctttagagca aacgatattt
     1261 gaagtaatat cggatatttg ggagaggaca aaaaataatc accctataac ttgagaccgt
     1321 catattacgt gtatctttaa cttttatatt gatgtctatc tattgacata aatcgttgtt
     1381 caacaagatt gaaactaagt gaatattgat aaaatgaata atgatgatgc gattacagat
     1441 ctgcaggatc tgattagaca gccaagcgtt tctgcaaaaa atcaaggatt agttgcgtgt
     1501 gccaatctag ttgtacgaat aatgagaaaa gctggaattg atactaaact tctttatatt
     1561 gatgatgcct taaaggcaga aaaagaaggt atttcgtctc cgccattagt ttatggtgaa
     1621 gttagatcca aatcaaatcc caatggaaag actattttgt tttacaatca ttatgatgtc
     1681 caaccagtag aaccaataga attgtgggaa gaagatccat ttagtgggaa agttcaaggc
     1741 aactatatct ttggacgcgg ttctgctgat gataaaggcg agttaattac tagaatcaag
     1801 gcagtggaat attatctaaa ccataccggt gacattccat gcaacgttaa atttattgtt
     1861 gagggagaag aggagatcgg aagtatacat ttaaagaaat accttagttt gtacaaagag
     1921 aagtttgagt gcgatggagt catatgggaa agcggttttg ttgacgcaag cggtagacca
     1981 atcatttctt tggggcaaaa aggtatcctg tctgtagaat ttatctcaag agggccaagc
     2041 agagatgctc attccagcct tgcagtctta atcgaaaatc cagcttggaa tcttattaga
     2101 gtattaaaca gcttaagaga cgacaaagga aaaattttga taaaggattg gtataatgaa
     2161 gcaagagatt tcactactga agaactttat tttattaatc aagagccatt tgatgaagaa
     2221 gaattaaaga aagaatatgg tataactaat tttctcaata acgctaaagg tattgaagtt
     2281 aggaaagcgt ttgctggaat gccaacatgc aacatttctg gattggtatc ggggtatgtt
     2341 ggtaaaggtt caaaaacaat gcttcctgct atcgctactg ctaaagtaga tttcagactt
     2401 gctccagata tgattccaga ggtacagttt aaaaggctca gaaagcatct agatgagcat
     2461 aggctttggg gtaatgaaga ttatgaaaca gagctaaagt ttctagatgg acaaccatcg
     2521 gctagaacat ccataaataa ttcatttgta aatattgtta aagaagctgc agtagaagtt
     2581 tacggtgatg taattgtaaa tgtatcatct gctggtacag gaccaatgta ttactttgcc
     2641 aaactgttag gcgtaccatc agtttgtatt ggtggaactg atttatctaa cagatctcac
     2701 tcaccaaacg agtatatgag aattgattcc ttgcacaaaa ccattaagtg tatcacaatt
     2761 attttggaaa aatttgctag gacaaatacg aacgttttta aaagtaaaaa tatattataa
     2821 cattctataa gtctcatatt tttattcagc tgattaacag cctggctcat ttactatgtt
     2881 ctgtagtaag ttgaatatgc atcatcaaac aattgttgct ttagcgaaac tacctcctgt
     2941 gtgattgatc ttactttagc tttgtctcca tttccctatt tctattctct acaaatagta
     3001 caaatccttg tatctagcga cgccatttcc tcctcacttc tgtgacgtct acttgagcta
     3061 acttttacaa ttaatcaatc attatgaatg ccagacgcct ctttgattga aaacagatta
     3121 tattacggat acagagcaaa attttaccac agtatcagtg cttccttttc ccggtactcc
     3181 tattgcaata gcagaaatac tagaggttat atttactctt atgtgtcata tgcattatgc
     3241 aaacaacttg actgaagacc aaaccagagt tttcgtgact tgatccgaac cgaccaggtt
     3301 aaataatcag tcagtgaaca gaccaaacca tgatcaaact gtctatcttt ttatatgtca
     3361 tgtgatattg aactttccat aggcttgtag tctatcatga caacagatga gagattgttt
     3421 caatacttga aggaaggcaa ggattggcaa
//
LOCUS       DASQSJ010000029         2288 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_3975, whole genome shotgun sequence.
ACCESSION   DASQSJ010000029 DASQSJ010000000
VERSION     DASQSJ010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2288
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3975"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(379..705)
                     /locus_tag="VE223_00565"
     CDS             complement(379..705)
                     /locus_tag="VE223_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20114.1"
                     /translation="MSKDIKINLKLTEDQHREIRMYLDSLTTEMILFGLRFAYKRHVA
                     KSGGYLMPGRKSLVKRETHLLSYSQAKWRLNNWKSMIGSYREKGYSYPTISRIKKEVQ
                     RIVADK"
     gene            complement(959..2176)
                     /locus_tag="VE223_00570"
     CDS             complement(959..2176)
                     /locus_tag="VE223_00570"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZC20115.1"
                     /translation="MAFNHINTYHNFIESELANLVKDNLYRRLKLISLGEGKRRGITA
                     SVDGKDNIINLCSNDYLGLSHNRDILKKTTMYLKQVSPCSSRLIAGNRPKMIELEEKL
                     AEHRETEFSLIYPTGYMANLGVITTLADKHTTILSDELNHASIIDGCRLSGAKIMVYR
                     HNDMEHLKQLIQTLFSKRRKIIVTEGVFSMDGDIPKLKQISNIAKEHNALTVVDDAHG
                     DFVFGCPSSTSSPFAGIPSYLGVKDEIDVHTSSLSKGLGCFGGYVASTRQTRELLINK
                     SRQFIYTSALPEHLCISALAALSKVIKGNLQQKLFDNVEFVFRKLSQCGFKLKDSKSQ
                     IIPIIIGQEKKALEFSNQLLDNGVFVQAVRFPTVKKGSARLRMSLTALNGKNQLRSAI
                     DTFKMVGKRLEVI"
     gene            complement(2157..2273)
                     /locus_tag="VE223_00575"
     CDS             complement(2157..2273)
                     /locus_tag="VE223_00575"
                     /inference="COORDINATES: protein motif:HMM:NF018651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20116.1"
                     /translation="MALKAGANGLITGGYLTTSGNNANEDITMIREIGLQPH"
BASE COUNT          660 a          455 c          382 g          791 t
ORIGIN      
        1 atttttatct attgaaaatg atgatgagaa actcagtcgt ttcaaatcat ccaaatgcgt
       61 aggaccaatt tctaaatgga tgtcatcccc ttttgaggaa acagattttg cgtctgatat
      121 attcaatata agcttccggc aatgcaatat gatatattga acactgctaa tcctgtggaa
      181 actaacctga tcggccgatg ttgattctcg tgctaaaact tcccttgaat gctagctaac
      241 tcttccctga gccgttggat ataaaatgta cactgtagag caaaaaatag aagttaaact
      301 cctacatctt ccaaaaagat ctttagaaca tggatgggca ggacatcaat gtactgaaac
      361 caaaaagctt aaatttgctt atttatctgc aacaattctc tgaacttctt tttttatcct
      421 cgatattgtt gggtagctat atcctttttc tctatacgac ccaatcatcg atttccagtt
      481 attcaatctc cacttagcct gactgtaact caaaagatgt gtctctcgct taactagact
      541 tttccttcca ggcataaggt aacctccaga tttagcaaca tgacgtttgt atgcaaaccg
      601 taagccaaaa aggatcattt ctgtcgtcag cgagtcgaga tacatgcgaa tctccctatg
      661 ttgatcttct gtcagtttca gatttatttt tatatctttc gacactaata ttacttagct
      721 tagcttttaa tttgtttctt tctaaactcg aattttgaaa tattatctgg ctagattcaa
      781 attagcagat tgtggcacaa aaccccgtac gatttttatt tcctctttag aggactcccg
      841 tagtattcac taactaatgt ttcaataatg cgaaagcttg ctaaacccaa atctattatg
      901 aagcgaacgt cctcagagaa atattcattg aatcttttgt ctctggtaca ataatagatc
      961 aaataacttc gagtcttttt cccaccattt taaaagtgtc tatggcagat cttaactgat
     1021 ttttgccatt taaagcggtt aatgacattc ttaaccttgc tgatcctttt tttactgttg
     1081 ggaatcgtac agcctgaaca aaaacaccat tatctaacaa ttgatttgaa aactcaagcg
     1141 ctttcttttc ttgtcctata ataataggta ttatttggct cttactgtcc ttaagtttga
     1201 agccacattg tgataatttt ctgaaaacaa attcaacatt gtcaaatagc ttttgttgta
     1261 aatttccctt aataacttta gataatgcag ctaatgcgga aatacagagg tgttcaggca
     1321 aggcagaagt ataaataaat tgtcgcgatt tatttataag aagttcccgc gtttgtcttg
     1381 ttgaagcgac atatcctcca aagcatccca agcctttact taaactgcta gtatgtacgt
     1441 cgatctcatc cttgactcca aggtacgacg ggatgccagc aaaaggagag gacgttgatg
     1501 atgggcagcc aaatacaaaa tcaccatgtg catcatcgac aacggttagt gcattatgct
     1561 cctttgcaat gttagatatt tgcttaagtt taggaatgtc accatccatg ctaaaaactc
     1621 cttcggtaac tattattttt cttctcttgg agaagagtgt ttggattaat tgtttgagat
     1681 gttccatgtc attatggcga taaaccatga tctttgcacc gctcagtctg cagccgtcta
     1741 ttatgcttgc atggttcaat tcatcgctta gtattgtagt atgtttatcc gcaagggtcg
     1801 taatgactcc gaggtttgcc atatatccgg taggataaat taacgaaaat tcagtttcac
     1861 gatgttccgc aagtttctcc tcaagctcta tcatctttgg acggtttcct gcaattagcc
     1921 gtgaactaca aggcgatacc tgcttaagat acatagtagt tttttttaaa atgtcacgat
     1981 tatgagataa tccaagataa tcgtttgaac ataaattgat aatattatct ttgccatcta
     2041 ctgacgctgt tatgcctctt ctttttcctt cgccaagtga aattaatttt aaccttcgat
     2101 acaagttatc ttttactaga tttgcaagct cgctttcgat aaaattgtga taagtattaa
     2161 tgtggttgaa ggccaatctc ccgtatcatg gtaatatctt cgttagcgtt atttccactt
     2221 gttgtaagat aacctcctgt aattaatcca ttcgctccag ctttgagagc aattctttct
     2281 ttctcttt
//
LOCUS       DASQSJ010000030         5754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_399971, whole genome shotgun sequence.
ACCESSION   DASQSJ010000030 DASQSJ010000000
VERSION     DASQSJ010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5754
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399971"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..714
                     /locus_tag="VE223_00580"
     CDS             <1..714
                     /locus_tag="VE223_00580"
                     /inference="COORDINATES: protein motif:HMM:NF003219.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HZC20117.1"
                     /translation="AVKNVMKSNYRNMQLDEYLAASLKDAGYGGVDVQKTPIGTRITL
                     YVTRPGLVIGRKGTGIKDITSKLEEKFGLTNPQISVMEVAVPELNPKIMCNRIGQLIE
                     RGTAFRRACLWTINTISNAGALGVEVTVAGKLRSERAHFEKHSSGVLPKSGDVAEKVV
                     KVGVTHVRTKMGLMGIQLRIALKNEIPQDFDYADTSPIDAQTQPEKPLAQQSSDENVI
                     PSGLREEAVPAGGSANGKS"
     gene            701..913
                     /gene="rpmC"
                     /locus_tag="VE223_00585"
     CDS             701..913
                     /gene="rpmC"
                     /locus_tag="VE223_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HZC20118.1"
                     /translation="MARAKLKTIREMNDDDLSGKLTDLRTDLSKIRSEAAKGTLKKKT
                     GSVKYIRRDIARILTIINERKIKKND"
     gene            906..1175
                     /locus_tag="VE223_00590"
     CDS             906..1175
                     /locus_tag="VE223_00590"
                     /inference="COORDINATES: protein motif:HMM:NF013985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030677 - ribonuclease P complex
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein subunit"
                     /protein_id="HZC20119.1"
                     /translation="MISDKNIFAHELVGLHAIIEHSLDRSFTGLSGTIVLETKNMISI
                     KTNRGTKRISKSIARKIRLDLPCGSCFIDGSSLKGRPEDRVTLSY"
     gene            1186..1527
                     /locus_tag="VE223_00595"
     CDS             1186..1527
                     /locus_tag="VE223_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HZC20120.1"
                     /translation="MARNIGISVAPPRKSCEDKHCPFHGILAIRGKMFSGTVISARAK
                     NMAVVAREYPHPVPKYKRYERSKSKLHAYIPECIDVEEGLEVKIAECRSLSKTVSFVI
                     IEVSNKDGSKD"
     gene            1511..1945
                     /locus_tag="VE223_00600"
     CDS             1511..1945
                     /locus_tag="VE223_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HZC20121.1"
                     /translation="MAAKTRAVSAKGVEEFRPYVTRALPVTAELVCADNTGAKVLRIA
                     QVTRYKGRHSRLPSAAVGDFVTVTVKKGPAELRRQIFGAVIVRQKYPVKRLNGVRVTF
                     EDNAAVLVTPEGEIKGTDIKGPVAAEAAERWPRIANLAPMII"
     gene            1962..2402
                     /gene="rplX"
                     /locus_tag="VE223_00605"
     CDS             1962..2402
                     /gene="rplX"
                     /locus_tag="VE223_00605"
                     /inference="COORDINATES: protein motif:HMM:NF028216.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HZC20122.1"
                     /translation="MSSSNVTILNTTKHILDSRICSSLTDDLRKQYGRRSARVVKGDT
                     VKVMRGEYAGIEGKVEKVTTERGTLAIEGVQREKIKGGNVKVQIHASDVTIMSFNLQD
                     KYRQTKLQSNPDGRPKGEQQYTADKKAKNTSKNEKTERKLAEGD"
     gene            2405..3121
                     /locus_tag="VE223_00610"
     CDS             2405..3121
                     /locus_tag="VE223_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4e"
                     /protein_id="HZC20123.1"
                     /translation="MAKIGRDFRLKRQMAPTFWAIKRKESQFVLQVKPGAHPKRRAYP
                     LGIIIRDVLKIANTMHEAEIIVNAGKVKVDGIIRRDVHFGVGLMDIVELVPTGQAYRF
                     VPKDSRLLVPVSIKDDEKLKKLVKITSKAVIRQGKLQYGFHDGKTLISDQRMSVGDTC
                     LVQLPESKINEHIKFEKGSTVLVTSGENAGGIGKIEDIRDGIFSLPKHALVSFAERSV
                     EIPVEIVMTVGSQRPIIGVD"
     gene            3126..3653
                     /locus_tag="VE223_00615"
     CDS             3126..3653
                     /locus_tag="VE223_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HZC20124.1"
                     /translation="MHQEQVQETQPMRKISVGKVVINIGVGKSGEPLEKAKHALEELT
                     GREPSVRGAKNTVRDFNIHKGEPIGAMVTLRREPAVKFLRNVLAANRNIVKTSSFDNY
                     GNTSIGIHEHIDIPGTKYNPEIGIFGMDVCISLTRPGYRIAKKRNRDRIGKFHRITKQ
                     EAIEFFKKEYGAETI"
     gene            3653..3832
                     /locus_tag="VE223_00620"
     CDS             3653..3832
                     /locus_tag="VE223_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HZC20125.1"
                     /translation="MPKPRDYAITGRKQVGHGRGNRWCKRCGSYVGIIQKYEIMLCRQ
                     CFREVAANLGFVKYA"
     gene            3849..4241
                     /locus_tag="VE223_00625"
     CDS             3849..4241
                     /locus_tag="VE223_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HZC20126.1"
                     /translation="MPATNVLSNLFTTLYNNESRRKKECIVIPASKFASEVLRVMQKH
                     RFIGEFEQVDDGRSGKFRIQLLAKINKCGIVTPRFSVKKDAYLDWERQFLPAYNMGIL
                     LVSTSHGIMSHHEAQNKGLGGALIGYVY"
     gene            4231..4782
                     /locus_tag="VE223_00630"
     CDS             4231..4782
                     /locus_tag="VE223_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HZC20127.1"
                     /translation="MSTNEDIIVSMDIPAAVTITKEENTITVKGKLGTLKKDFTRMPT
                     TISIEDNRLIIKPYGTRKKDLSIRNTARSIIANMIKGVENGFTYKLKIVYAHFPISVK
                     TRGKEIYIENYFGERSPRVSRVIGDDTKVNVVGEDVVVEGPSLEDVSQTAANIEFSTK
                     VKGKDQRVFLDGLYIYSREDGIR"
     gene            4866..4965
                     /locus_tag="VE223_00635"
     tRNA            join(4866..4893,4920..4965)
                     /locus_tag="VE223_00635"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4926..4928,aa:Asn,seq:gtt)
     gene            complement(5058..5417)
                     /locus_tag="VE223_00640"
     CDS             complement(5058..5417)
                     /locus_tag="VE223_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20128.1"
                     /translation="MSYDRFVDDRLLTSRDALNKLQIKVKLIEIDENARDYSQRFGRR
                     VLVKKVLLTIKHNETQEIEEREIDLEELEARMRKERLFSSSNRWVSPTEIKNGFIVAS
                     KHLELLADAIALDIIVV"
     gene            complement(5473..>5754)
                     /locus_tag="VE223_00645"
     CDS             complement(5473..>5754)
                     /locus_tag="VE223_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20129.1"
                     /translation="CKKKIWPPFKYCPKCLSKARLLKIDRNGVLLEFTLSHLENIGGV
                     FGIVEIRDIRLVGSIFGGPLRQGMKVKMIKCGINPNGSPFYHFEKTNNK"
BASE COUNT         2008 a          978 c         1275 g         1493 t
ORIGIN      
        1 gctgtaaaga atgttatgaa aagcaattat cgtaacatgc aacttgatga gtatttggca
       61 gcgagtttaa aggatgccgg atacggaggt gtagatgtac aaaaaacacc aattggcact
      121 aggataacac tttatgtcac acgacccggt cttgttatcg gaagaaaggg tactgggatc
      181 aaagatatta cttctaaatt agaagaaaaa tttggcttga caaatcctca aatatctgtt
      241 atggaagttg ctgtcccgga attgaatccg aagataatgt gtaacagaat tggtcagttg
      301 attgaacggg ggacagcttt taggagggcg tgcctctgga caataaatac aattagtaat
      361 gctggtgctc taggtgtaga ggtgacagtt gcagggaaac ttagaagtga acgggcgcac
      421 tttgaaaaac attcttcagg tgttctgcca aagagtggtg acgtggcaga gaaggtagta
      481 aaggtgggtg taacacatgt tcgaacaaag atgggtctta tgggtataca gttgagaatt
      541 gcgttaaaaa acgagattcc tcaagacttt gattatgcag acacatctcc aattgatgca
      601 caaacacaac ctgaaaaacc attagcacaa caatcatcgg atgaaaatgt aattccaagt
      661 ggcttgcggg aagaagccgt gccagccggg ggaagtgcta atggcaagag ctaagctaaa
      721 gacaatcagg gaaatgaacg acgatgatct atcaggaaaa ttaacagatc tcaggactga
      781 tctctcaaag attagatcag aagcggcaaa aggaaccttg aaaaaaaaga ccggaagcgt
      841 taaatatatt cgcagagaca tagctcgaat tctgactatt ataaacgaga ggaagatcaa
      901 aaaaaatgat tagcgataaa aatatttttg cacatgagct tgtaggtctt catgcaatta
      961 tagaacatag tttagatagg tcatttacag gcttgtcggg gaccatagtc cttgaaacta
     1021 aaaatatgat tagcataaaa acaaataggg gaacaaaaag aatatctaaa tccatagcaa
     1081 gaaaaattag gttagatctt ccctgtggca gttgctttat agacggttcg tcactaaagg
     1141 gaagaccaga agaccgtgtt acattatctt attgagttga aaaatatggc tagaaatatt
     1201 ggaatatcgg tcgctcctcc gcggaaatca tgtgaggata aacactgtcc ttttcatggg
     1261 atccttgcaa taagaggaaa aatgtttagt ggaacggtta ttagcgctag agcaaaaaac
     1321 atggcagttg tagctcgaga gtatccacat cctgtaccaa aatacaagag gtatgagaga
     1381 agcaagtcta aactccacgc gtatatccct gaatgcatag atgttgaaga aggcttggag
     1441 gtcaagatcg cagaatgtag atccctgtcg aaaacagtct cgttcgttat aattgaggtg
     1501 agtaacaagg atggcagcaa agactagggc cgtttcagca aaaggggtag aagaatttag
     1561 accatatgtt acaagagctc ttccggtcac tgctgagcta gtatgtgccg ataacacagg
     1621 tgcaaaagtt ttgcgtatag ctcaagttac tagatataaa ggaaggcatt ctaggctgcc
     1681 ttctgccgca gtgggagatt ttgtgacagt aacagttaaa aaaggtccag cagaacttcg
     1741 aagacaaatc tttggagcag taatagtaag acaaaaatat ccagtcaaaa gactaaatgg
     1801 tgttcgtgtg acattcgaag acaatgcagc agttttggtg actccagaag gagagatcaa
     1861 aggaaccgat ataaagggtc ctgttgctgc agaagcagca gaaagatggc ccagaatagc
     1921 aaacttagca ccaatgataa tttaggagtt aggatataat catgtctagt tcgaatgtaa
     1981 caatattaaa tactacaaag cacattctcg attcaagaat atgctcttcg cttactgatg
     2041 atctacgaaa gcaatatggt agacgaagcg caagagtagt aaaaggcgat actgttaagg
     2101 taatgcgtgg cgaatacgct ggaatcgaag gaaaggttga aaaggttact actgaaagag
     2161 gtacgttggc aatcgaaggc gttcagagag agaagatcaa gggaggaaat gtcaaagttc
     2221 agatccacgc atcagacgtc acaatcatga gttttaacct acaagacaaa tacagacaaa
     2281 caaaacttca aagcaaccca gatggtcggc caaaaggtga acaacaatac acagctgata
     2341 aaaaagctaa gaatacttct aaaaatgaga aaacagaacg aaaattggca gagggcgact
     2401 gacaatggca aaaataggtc gagactttag actaaaaaga cagatggccc ctaccttctg
     2461 ggctatcaaa agaaaggaaa gccaatttgt cttacaggtg aaacctggag cccatccaaa
     2521 gagaagagca tatccattag gaatcatcat aagagatgta ctgaaaatag caaatacaat
     2581 gcatgaggct gaaataattg taaatgcagg aaaagtaaag gtagatggca ttataagaag
     2641 agacgtacat tttggagttg gattgatgga tatagttgag cttgtcccta caggacaagc
     2701 atacagattt gtaccaaagg actcccgatt gctagtgcct gtgagtatta aagatgatga
     2761 gaaactcaaa aaacttgtca agatcacaag taaagccgta atcagacaag gcaaacttca
     2821 atacggtttc catgatggaa agacgcttat tagcgatcag aggatgagtg taggcgacac
     2881 atgcctcgtt cagcttccag aatcaaaaat caatgaacac attaaattcg aaaaaggttc
     2941 cactgtattg gtaacaagcg gggagaacgc cggcgggata ggcaaaatag aagatatcag
     3001 agacggcatt ttttctctgc caaaacatgc actagtatct tttgcagaaa gatcggttga
     3061 gatccctgta gaaattgtta tgaccgtcgg ttctcagagg cccatcatag gagtggatta
     3121 gacatatgca tcaggaacaa gtgcaagaaa ctcaacctat gagaaaaatt agcgtaggca
     3181 aggttgtgat aaatattggc gtcggaaaat ctggtgaacc tttggaaaaa gcaaaacatg
     3241 cattagaaga attgactggc cgagagccga gcgtacgtgg agcaaagaat actgtcagag
     3301 actttaatat ccataaggga gagcctattg gcgcaatggt cacgcttaga agggaaccgg
     3361 cagttaaatt tttaagaaac gtcttagcag caaacagaaa cattgtgaag acttcatctt
     3421 ttgataacta cgggaatacc tcaattggaa tacacgaaca cattgatata ccaggaacaa
     3481 aatacaatcc tgagattggt attttcggaa tggatgtctg tatttcatta acgaggccag
     3541 gatatcggat cgcaaagaaa aggaataggg atagaattgg taaatttcat agaatcacaa
     3601 aacaagaggc aattgaattc tttaaaaaag aatacggagc tgagacaata taatgcccaa
     3661 acctcgagat tatgctatta ccggaagaaa gcaagttgga catggcagag gaaatagatg
     3721 gtgtaaaaga tgtggttcct atgtcggcat tatccaaaag tacgagatta tgctttgcag
     3781 gcaatgcttc agggaagtag ctgcgaatct aggcttcgta aaatatgctt gagtagtgtg
     3841 agaggaaaat gccagccaca aatgtgctat caaatctatt tactactcta tataataatg
     3901 aatcacgcag aaaaaaggaa tgtatagtaa tacctgcatc aaaatttgca agcgaggtct
     3961 tgcgtgtaat gcaaaaacac cgctttattg gcgaatttga acaggttgat gacggtcggt
     4021 ctggtaagtt tagaattcag ttattggcaa aaattaacaa atgtggaata gttactccga
     4081 ggtttagtgt aaaaaaggat gcatatctag attgggaaag acagtttttg cctgcatata
     4141 atatgggaat acttcttgta tcaaccagtc atgggatcat gtctcatcat gaggcgcaaa
     4201 ataaaggctt gggaggagcg ttgattggat atgtctacta acgaggatat tattgtctca
     4261 atggatatac ctgctgcggt gacaatcaca aaggaggaaa acaccattac tgtcaaaggt
     4321 aaactaggaa ccttaaagaa ggattttaca aggatgccta caaccattag tattgaggac
     4381 aataggttga tcataaaacc atacggaaca cggaaaaagg atctttcaat aagaaatacc
     4441 gctagaagca ttattgcaaa tatgattaaa ggggtagaaa atggctttac gtacaagcta
     4501 aagattgttt atgcacattt tcccatttcg gtaaagacaa gaggaaagga gatatacata
     4561 gaaaattatt ttggcgaaag atcgccaagg gtttctagag tcattggaga tgacacaaag
     4621 gtaaatgttg tcggtgaaga tgtagtagtt gagggaccaa gtttggaaga cgtatcacag
     4681 acagccgcca atatagaatt ctctaccaag gtaaaaggaa aagatcagcg agtattttta
     4741 gacggtttgt atatttactc aagagaagat ggtataaggt agttaaacca ccgtatttgc
     4801 aatttttaaa tgcacatatt cgatacctaa acatttatgt tgtgcttgaa ttcgatttat
     4861 attgcgccgc tgtagctcag catggtagag caagttcatg gctatgcctt ggagctcaac
     4921 tggctgttaa ccagtgggtc atcagttcga gtctgatcag cggcgcttta ttctattaca
     4981 cagagctgaa ataaaaccaa aatcggctgc aattaatttg tatttgtgta ttatataatt
     5041 tttgtaaact aatacaatta tacgactata atatcgagtg caattgcatc cgcaagcaac
     5101 tcgagatgct tgcttgccac aatgaaccca tttttgattt cagttggtga aacccaccta
     5161 ttagatgagg aaaataatct ttctttcctc attctagcct caagctcttc taggtcaatt
     5221 tccctttctt ctatttcctg agtttcgttg tgttttattg tgagcaagac ctttttaaca
     5281 agaaccctac gaccaaatct ttgagaataa tctcttgcat tttcatctat ctcgatgagc
     5341 tttactttta tctgaagctt gttaagagca tctctacttg tcaacagcct atcgtctaca
     5401 aatctatcat aactcataca ctctataaca atatgataat tgtaatatat taaccaagcc
     5461 ataattgtgt gactatttgt tatttgtctt ctcaaaatga taaaaagggc taccattggg
     5521 attaattcca cacttaatca tcttaacttt catcccttgt cgcaatgggc ctccaaaaat
     5581 agatcccact aatctaatat ctctaatctc aactattcca aatactcctc caatgttctc
     5641 taaatgagat aaagtaaatt caagaagaac tccatttcga tcaattttta gtaaacgtgc
     5701 ctttgacaga catttgggac agtatttgaa aggaggccat attttctttt tgca
//
LOCUS       DASQSJ010000031         3759 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_481830, whole genome shotgun sequence.
ACCESSION   DASQSJ010000031 DASQSJ010000000
VERSION     DASQSJ010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3759
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481830"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            400..705
                     /locus_tag="VE223_00650"
     CDS             400..705
                     /locus_tag="VE223_00650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20130.1"
                     /translation="MTDYFEIDRLVEDLAKIYSTACATTWFKIAKNRRPTKEEFRAKV
                     VEFMNHFDYTLSVYPQVPEAEQLRNHAKKILDAEIKTILSGNNKEVEKRYKYYVDYG"
     gene            1026..2165
                     /locus_tag="VE223_00655"
     CDS             1026..2165
                     /locus_tag="VE223_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HZC20131.1"
                     /translation="MHITVSAIKADIGGIGGHTRPSDDLFEVVKNYVSKRAKNLLTDY
                     YVGYTGDDIHIIMTHNKGIENDKVHQLAWDAFTEGTKTAKEQGLYGAGQDLLKDAFSG
                     NIKGLGPGVAEIDMEERPSEVFCVFAADKTEPGAFNFPLWRIFVDARSNTGILINEQL
                     ASGVTFRILDVMSGKIADLKLWSEKAELEAALMYPGRYVVHSVLSSEGEQIVSASTDR
                     LHNIAGTYVGKDDPIAIVRTQKNFPATEEAGSAFNDPHYVAGNTRGSHHMPLMPVKLN
                     SAASLNYSIPIVSCLVFSMHNGRLTGPHDGFGTADWDLQRMWAAERAMIMRNQGFIHP
                     ATLVPEELEYNKGYEARISKLNEKFKDIDQTLPDRSDKAARAKKD"
     gene            2162..2842
                     /gene="tpiA"
                     /locus_tag="VE223_00660"
     CDS             2162..2842
                     /gene="tpiA"
                     /locus_tag="VE223_00660"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HZC20132.1"
                     /translation="MTRLFLINFKNYTEISAERTVSLALAAQKAAKTLNVEIVVAPPQ
                     PSIAIVKQNVDIPVFCQHIDDAKAGQSTGFFIPEMAKSYGAAGSIINHSEHRLSYVVI
                     SNLVQRLKQLSMTSVVCAQTPKEVAELAKLNPDFIAIEPPELIGSGKAVSKESPKIIQ
                     DSIKSAAQSSKYTKLICGAGIVDQSDVTAALQLGVEGILVASGIIKSNSWYEKILELG
                     SAFTMTRL"
     gene            2949..3617
                     /locus_tag="VE223_00665"
     CDS             2949..3617
                     /locus_tag="VE223_00665"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZC20133.1"
                     /translation="MKVNKNIYSVLTRLEEDANRERSSNVETPFEDRMLAISWDTGKF
                     FNILLRTMRATRVLEIGTSVGFSTLWFADAVIQNSSANNGAREKLITTIDWNHLKVAR
                     AHRNFDDAGVNGIIEVIEAPAKRLLNEMQTKYQNYSMSNDQTALFDFVFIDADKENLI
                     DYLDLVLPIVRVGGIIAADNALYPEEYRQAMTKYINYLRNKTSLESVTVPIGNGEEIA
                     LKVK"
BASE COUNT         1247 a          676 c          775 g         1061 t
ORIGIN      
        1 atggctaaca attttttact atttagggtc aatttacatt agtaatgaaa tctgaattat
       61 tgtattaaat cttataactt ataggacaac atcttctctt ctagtagact atattatcca
      121 tagttacccg atactgttcg ggcaccttga acatgctggc tggagtatat ttgacgcagc
      181 gcataagagt ctatatatct gtatttatgt ccttgcaatc atgacattac tactgcgctg
      241 tggcatgaat tcctatgggg aattcagaag ttttctccat agcactatta tttattatct
      301 cttggagtag tcttctgcgt ataatttatc gttttcttgt acatacgtca tttctaacac
      361 aacaaatggt tttaaatgtt gaaaagaagt cataaatcta tgactgatta ctttgagatc
      421 gacaggctgg tagaagatct tgccaaaata tattccaccg cctgtgcaac tacatggttt
      481 aagatagcaa agaataggag gcccacaaaa gaagagttcc gtgctaaggt agtagaattt
      541 atgaaccatt ttgactatac tttatcagtt taccctcagg ttcccgaggc agaacagcta
      601 cgaaatcatg ctaaaaaaat ccttgatgca gaaatcaaaa ccatcctttc aggaaacaac
      661 aaagaggttg aaaaacgcta caaatattat gtagattatg gatagcaatc ctttattcat
      721 aaaacaggtc tggtcttcaa gtatacttgt taaattaacg attagaagga gatgtcattg
      781 ttaggtcatt gcttaaattt ttatagaaaa tctattctgc atcaaaaagt caatataaat
      841 tacgactatg ctagctgtag caaaaaatta tctgatcttt tgatttgttg ttttgttgtt
      901 gctgccgatt ccactactat ggccatcaac atgatggctg cctgataatg caaatattca
      961 aagaaaaacc gaaaactcaa gtaattatca gaaaattttt aaacttcatc ttatgaaatg
     1021 tcgttatgca tatcacggta tcggcaatta aggcagacat tggaggaatt ggcggacata
     1081 ctcgcccaag tgatgatctt tttgaggtgg taaagaatta tgttagtaaa cgagcaaaaa
     1141 acctgttaac tgactattac gttggttata caggcgacga tattcatatt atcatgactc
     1201 ataataaggg tattgagaat gataaagttc accaacttgc atgggatgcc ttcacggaag
     1261 gaaccaaaac tgctaaagag cagggattat atggcgctgg acaagatttg ctaaaagatg
     1321 cgttttcggg taatataaaa ggcttgggcc ccggcgtagc agagatagat atggaggagc
     1381 gtccaagtga ggtgttttgt gtatttgctg cagacaagac tgaaccgggc gcttttaatt
     1441 ttcccttatg gcgaatattt gtcgatgcca gaagtaatac cggcatactg attaacgagc
     1501 agctcgcttc cggcgtaacc ttcagaatac tagatgtaat gagtggtaaa atcgcagatt
     1561 tgaaactttg gtcagaaaaa gcggagctcg aagcagccct tatgtatcct ggacggtacg
     1621 tagtacattc cgttctatct tctgagggcg aacaaattgt atctgcttcg acagatagat
     1681 tacataacat tgctgggaca tatgttggta aagatgatcc gatagcgatc gtaagaacac
     1741 agaaaaattt cccggctacc gaggaagctg ggagtgcatt taacgatccg cactatgttg
     1801 caggcaatac tcggggcagt caccacatgc cccttatgcc agttaaatta aattcggcag
     1861 cgagtctgaa ttactctata ccaattgtgt cttgtttggt atttagcatg cataatggta
     1921 gactgaccgg accgcatgat ggctttggta ctgcagattg ggatctgcaa agaatgtggg
     1981 ctgccgaaag agcaatgata atgcgaaacc aaggatttat ccatccagca acacttgtcc
     2041 ccgaagaact ggaatacaac aagggatacg aagctagaat cagtaagcta aacgagaagt
     2101 ttaaagatat tgatcagact ttgcctgatc gtagcgacaa agctgcaaga gcaaaaaagg
     2161 attgacacgg ttattcctaa ttaactttaa gaactacact gagatctccg cagaaagaac
     2221 agtcagtctg gcattagctg cacagaaagc tgcaaagact ttaaatgtgg aaatagtagt
     2281 agccccacct caaccgtcta tagccattgt aaagcaaaac gtggatattc ctgtcttttg
     2341 tcaacatata gatgacgcta aagcaggtca atccacgggt ttctttattc cagaaatggc
     2401 taaatcatat ggggcagccg gctcaatcat taaccacagc gaacacagat taagttatgt
     2461 cgttattagc aacctggtac agcgtctaaa gcagctaagt atgacttcag tggtatgtgc
     2521 ccaaacacca aaggaggttg ctgaattggc aaaactaaat cctgatttta tagcaatcga
     2581 acccccagaa ttaataggct caggaaaagc agtatcaaaa gagtctccaa aaattattca
     2641 agattcaata aaatcagccg cacagagttc caaatatacc aaattaattt gcggggctgg
     2701 aatagtagat cagagtgacg tgacagctgc ccttcagctg ggagtcgaag ggattttggt
     2761 cgcaagcgga ataataaaat caaactcctg gtatgaaaag atacttgaac tcggatcggc
     2821 ttttactatg acaaggctgt gattcaagat tcatagtttt gtcatttata taatatcatt
     2881 tgaaacccgc gggtatttaa caaacaaact cattattatt ttcgtataaa taacaataga
     2941 tcctaataat gaaggtgaac aaaaatatct attcagtttt gacaaggtta gaagaggatg
     3001 caaacaggga gagatcttca aatgtggaga ctccatttga ggataggatg cttgcgattt
     3061 catgggatac tggcaagttt ttcaacatac tcctcagaac catgcgcgca accagagttt
     3121 tggagatagg tacttctgtt ggattttcta ccctttggtt tgctgatgcg gttattcaaa
     3181 actcctctgc aaataatgga gctagagaaa aactgataac gactatagac tggaaccacc
     3241 ttaaagtcgc cagagcacat aggaattttg atgatgcagg agttaatgga ataatagagg
     3301 taatcgaagc tccagctaag aggcttttga atgaaatgca aaccaaatat caaaattata
     3361 gcatgagcaa cgatcaaaca gccttatttg actttgtttt catcgatgca gacaaagaaa
     3421 atttaataga ttatttggat ctggtattac caatagtaag agtaggcgga attatcgccg
     3481 ctgacaacgc gttgtatcca gaggagtata ggcaggccat gacaaaatac atcaattatc
     3541 taagaaacaa gacaagtctc gagtcggtaa cagttccgat aggcaatggt gaggaaattg
     3601 ctcttaaggt aaaatagaat aagagattct tccaaaggat aaaaactgtt atattattaa
     3661 tactgcagtc tcaaacccca tttaacgaga gaaatacaac atgatagcaa cccatggtat
     3721 tattattttg tttcttctaa ataaataaaa agtgaattc
//
LOCUS       DASQSJ010000032         6405 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_123125, whole genome shotgun sequence.
ACCESSION   DASQSJ010000032 DASQSJ010000000
VERSION     DASQSJ010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6405
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123125"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..501
                     /locus_tag="VE223_00670"
     CDS             <1..501
                     /locus_tag="VE223_00670"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017710.1"
                     /note="an AccC homodimer forms the biotin carboxylase
                     subunit of the acetyl CoA carboxylase, an enzyme that
                     catalyzes the formation of malonyl-CoA, which in turn
                     controls the rate of fatty acid metabolism; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HZC20134.1"
                     /translation="AEDPFYDFTPSVGPVPNCNIPYGPGIRVDTYLYPSCNVSAYYDS
                     LVAKLIAWGRDFEEARIRTRNALDEFTIEGVNTTIPLHKTIMDEQNFINGDISTDYLE
                     RFNILDKMRENAKEESQRVSSAAIAAILLQSEFIKKGMTGSSMTSKPQLERSKWKKIG
                     REFNGI"
     gene            491..1003
                     /locus_tag="VE223_00675"
     CDS             491..1003
                     /locus_tag="VE223_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HZC20135.1"
                     /translation="MEFKLADQATVLDGELIRTLGRESILIKINGKEHNVRLLRSGTQ
                     ELEFILDHSFHHAKILNWGSSEIKTLIDGQVLTIKKHSRLTDVLEKSLSLTSFGSGEN
                     NLTSQIPGRVDSILQKVGSSIKKGDAIVILESMKMQVAVKAHKDGLIKEIRAKEGSTV
                     ARYDVVAVIE"
     gene            1185..2579
                     /locus_tag="VE223_00680"
     CDS             1185..2579
                     /locus_tag="VE223_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HZC20136.1"
                     /translation="MVITFGVASKIKTGLFHIRKLDTNRSPFEIFTALYNKYDKVFIL
                     ESLVGPKELSEMSIIGFDPEFTITCNSNNFTIYDRKKTMIAKHKVKEPLSCIKKILPK
                     INESHFRYIGGAVGYISYDAVRFWEDLPVEGKGKLPVLEFGVYTDGLLYDNRENRTYY
                     FNIGNNSRLDLINEIVHINDININPSFFYSIPKSNLTKRQFIKIVKRSKEYIRDGEIF
                     QVVLSKKMKFKVKGNLLSVYKFLRDLNPSPYMYFLKMTDRCIIGSSPEMLLRISGDYV
                     ETFPIAGTRPIVDNETANESLRKDLLNDEKEIAEHTMLVDLSRNDLGRICKYGTVRVH
                     EHMKIKRFSHVQHIVSHVSGYLRNGYDSYDAIKAVFPAGTVSGAPKVRAMQIIDELEP
                     ELREAYAGAVGYFSFNGSCDFAITIRSMFINKGKAYIQSGAGIVMDSDPEKEWMETNH
                     KVNAILSSLKDASR"
     gene            complement(2767..3516)
                     /locus_tag="VE223_00685"
     CDS             complement(2767..3516)
                     /locus_tag="VE223_00685"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20137.1"
                     /translation="MLHTKLLGIKQAFLIAYLTGFLWLRRNPMSMVFTAISPFSLLFV
                     LFVITNGHYIQFAVAGSLVMALVGYGLALGQDISFYKTEYKIQDVFVASPVSPLTYMT
                     GLALSELLFGLPALIVLTALAASFGTSFINSVLLLSDIVLIWGAMSAMGFFLSSHMLH
                     MRNATQVISFVNVILTVIPPVYYSIERLPLGLQYFSYFLPTTHASIIVQYTMGLPTPK
                     EWSLGLGIGVQLVYLIGMIVLAKTKALWREK"
     gene            complement(3983..4144)
                     /locus_tag="VE223_00690"
     CDS             complement(3983..4144)
                     /locus_tag="VE223_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20138.1"
                     /translation="MLRVEMSSEAHFFLNIFTIVKVSAFLIDKTTLRIGYSMKHGRLW
                     VAVVEPIRK"
     gene            complement(4393..5244)
                     /locus_tag="VE223_00695"
     CDS             complement(4393..5244)
                     /locus_tag="VE223_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HZC20139.1"
                     /translation="MDQIIKKIRMLEKKNNQKDKTKINNTTKADTTRQMIVLNVYRAN
                     THRNDLPRFEKFQIPVQRWMTVLDALLFAKNYLDSSIAIRYSCRMASCGSCGMKINGI
                     PKLACYTKISELQGDTITCEPLSNFPHIRDLVTDFSQFFEHHKEMAPFIHNNDADIRD
                     DNKLSEFKQTPQDVDNYLQFSYCIRCGLCYSACPTVATDTKFPGPQALSQAYRYFADT
                     RDDLSNRRLNAIDGKHGIWRCHFAGSCSKVCPKGVDPALGIQLLRGHIMGYSRNEKKI
                     AKLRDPT"
     gene            complement(5254..5631)
                     /locus_tag="VE223_00700"
     CDS             complement(5254..5631)
                     /locus_tag="VE223_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HZC20140.1"
                     /translation="MENKTKMVKMMLRESQIMKIHYTTGLAALFVVAVHIIVRLMTPS
                     FSLSLLYENVIKNYHNIPYSILLESILILIAIHGFNGLRVILLELRQKKLWEDGITIF
                     TIAATISIIAYGTRTIIMANWLG"
     gene            complement(5621..6076)
                     /locus_tag="VE223_00705"
     CDS             complement(5621..6076)
                     /locus_tag="VE223_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HZC20141.1"
                     /translation="MKTSNERVNNRENREGIKGWLNPSRFGWERISCWLQRQTGVFIL
                     VYFIGHVYETSSLLRGENARNAMLEITQTLGGHIFLILVIGTSTFSSTNGIRVIFTHG
                     GKGLGNSGRPYYGYDAICLNYRQRSGIWIALILAAIVMLYGSTVLSGGK"
     gene            complement(6076..>6405)
                     /locus_tag="VE223_00710"
     CDS             complement(6076..>6405)
                     /locus_tag="VE223_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="part of four member fumarate reductase enzyme
                     complex FrdABCD which catalyzes the reduction of fumarate
                     to succinate during anaerobic respiration; FrdAB are the
                     catalytic subcomplex consisting of a flavoprotein subunit
                     and an iron-sulfur subunit, respectively; FrdCD are the
                     membrane components which interact with quinone and are
                     involved in electron transfer; the catalytic subunits are
                     similar to succinate dehydrogenase SdhAB; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     flavoprotein subunit"
                     /protein_id="HZC20142.1"
                     /translation="NEKDIAEGLKKIRYLKQQTWKHVDDHAKEYNTNFINVMEIDSML
                     RTAEIVLAGAFNRCESRGAHARTDYPNRDDINFLKHTLGYLTRDQPEMSWHPVTFTRY
                     APMVRKY"
BASE COUNT         2068 a         1183 c         1206 g         1948 t
ORIGIN      
        1 gcagaagatc ccttctatga ctttacaccg tccgttggcc cagtcccaaa ctgcaacatt
       61 ccatatggcc caggaattag agtcgacaca tacctgtatc caagctgtaa tgtgtcagca
      121 tattatgatt ctttagttgc aaagctaatt gcatggggta gggattttga agaagcacgg
      181 ataaggacta ggaatgctct tgatgaattt acgattgaag gagttaacac gacaattcct
      241 ttgcacaaga caataatgga cgagcaaaat tttatcaacg gagacatttc cacagattat
      301 ctggaaaggt ttaacatatt ggataaaatg agagagaatg caaaagaaga atcacaacga
      361 gtgtcatctg cagctattgc tgcaatcctt ctgcaatctg aatttattaa gaaaggcatg
      421 accggaagca gtatgacatc caaacctcag ttagaaagat caaaatggaa gaagattgga
      481 agggagttta atggaattta aattagccga tcaggcgact gttttggatg gtgagttaat
      541 acgtacactt ggacgagagt ctattttgat aaagataaat ggaaaagagc acaatgttag
      601 gttgttaaga tccggtaccc aagaattgga gtttatatta gatcattcat ttcatcacgc
      661 caagatactt aattggggca gctcagaaat caaaacattg atcgatggac aggttttgac
      721 aataaaaaaa cattcaagac ttaccgatgt cctagaaaaa tcactatcgc tcacaagctt
      781 tggtagcgga gaaaataatt tgactagtca gattcctgga agagttgatt ccattctgca
      841 aaaggttgga tcttcgatca aaaaaggtga tgcaatagta atattagaat caatgaagat
      901 gcaagtggca gttaaggcac acaaagatgg tcttatcaaa gaaataagag caaaggaagg
      961 ttcaactgtt gccaggtacg acgtcgtagc tgtaatagag taaggggagt aaaacggcaa
     1021 aatgggcatc ctctgttgta gtataaggat atttatctac atttgatgtc tatacagaaa
     1081 gatttgtatt gtgttttcct gtacagtaaa taatgattgc gcaaagttta aatgatgtca
     1141 gcgaattttg agtgatggtc ttatcgtttt gagaggcaat atttgtggtg ataacctttg
     1201 gggttgcatc aaaaataaaa acaggtcttt ttcatattcg caaattagat actaatcgta
     1261 gtccatttga aattttcact gctttgtaca ataaatacga taaggttttc attttagaat
     1321 ctcttgtagg tccaaaggag ctttcggaaa tgtctattat aggatttgat cctgaattca
     1381 caatcacctg caattcgaac aactttacta tttatgaccg taaaaaaaca atgattgcta
     1441 agcacaaagt taaagaaccc ttatcctgca ttaaaaaaat tctaccaaaa ataaatgaaa
     1501 gccacttcag atatattggt ggagcagttg gttatattag ttacgatgca gtaagattct
     1561 gggaggatct tccagttgaa ggtaaaggca aattgccggt gttggaattt ggagtttaca
     1621 ctgatggact cctctatgat aatagagaaa atcggactta ttattttaat atcggaaata
     1681 actcacgctt agacttgata aacgaaattg tgcatataaa tgacataaat atcaacccgt
     1741 ctttctttta ttcaattccc aaaagtaatt tgactaaaag gcaatttatc aaaatagtta
     1801 agagatcaaa agaatacatc cgtgatgggg agatctttca agtagttctt tcaaagaaga
     1861 tgaaattcaa agtcaaggga aacttgctat ctgtttacaa atttttaaga gaccttaatc
     1921 cctcgcccta catgtatttt ctcaagatga cagataggtg cataatagga tcaagcccag
     1981 agatgcttct acgcatcagc ggagactatg ttgaaacttt tccaattgca ggaactagac
     2041 ctattgtcga taatgaaacg gcaaatgaga gccttagaaa ggatttactc aatgacgaaa
     2101 aggaaattgc agaacacacc atgctagttg acttatcccg taatgatctc ggaagaatat
     2161 gcaaatacgg aacagtaagg gttcacgaac atatgaagat aaagagattc agccatgtgc
     2221 aacatattgt atcccatgta tcaggatatc ttcgtaatgg ctatgactct tatgatgcaa
     2281 tcaaggcagt atttcccgct gggaccgttt ccggtgctcc aaaagttcgt gcaatgcaga
     2341 taattgatga gttggaaccc gagcttcggg aagcatatgc aggcgcggta ggctattttt
     2401 cgtttaatgg atcgtgtgac ttcgctataa ctattagatc tatgtttata aacaagggca
     2461 aggcctacat tcaatcgggc gccggtattg taatggattc tgatccagaa aaagaatgga
     2521 tggaaactaa tcataaagta aacgcaatat tatcctcact aaaagatgcc tccagataac
     2581 gcatagactt aagataaggt tacaggattc ttcttcagat tgattctcag cttataactt
     2641 agttttacct tatagttcat gagaacgcta aattatgatg gttttacctt ttctataacc
     2701 atatgattgg ctaaacgcca tggcttgtcg aaaaatgaaa aatttgaatc gaaataattc
     2761 caagcatcat ttttcacgcc ataaggcttt tgtttttgct aaaactatca ttcctattaa
     2821 atatacaagc tgcactccaa ttcctaatcc aagcgaccat tccttcggcg ttggaaggcc
     2881 catggtatac tgcacgataa ttgaggcatg cgtagtaggt aagaagtaag aaaagtattg
     2941 taatcctaaa ggcaatcgtt ctatcgaata ataaactgga ggaatcacgg tcaggattac
     3001 atttacaaaa gagattactt gtgtagcatt tctcatatgt agcatgtgag atgacaaaaa
     3061 aaaacccata gctgacatag ctccccaaat tagcacaata tctgataata atagaactga
     3121 gttgataaag gaagttccga aggacgcagc aagtgctgtg agcacgatca acgccggcag
     3181 accaaacaaa agctctgaaa gagctaggcc agtcatgtat gttagtggtg atactggtga
     3241 agcaacaaaa acgtcttgaa ttttatactc agtcttgtaa aatgatatat cctgtccaag
     3301 tgccagccca taacctacaa gtgccataac aaggctacca gccacggcaa actgaatata
     3361 atgaccgtta gtaattacaa acaatacaaa aagcaatgaa aatgggctaa tagccgtaaa
     3421 aaccatagac atgggatttc ttcgaagcca cagaaatcca gttaagtagg ctatcaaaaa
     3481 agcctgtttg attcccaata actttgtgtg cagcatttaa actatttcgt tattcttaca
     3541 atgataaata atatatatca tatgcgtcga aaaatgggta aaacaagcgt tcaggagtaa
     3601 actgagtctt gtaaaaattt ctcattttat cccttaaatt ataaaattga tattagattt
     3661 gataacagta ttatgcataa acacaaaaag aattagccac tggtataaag gttgaatgtt
     3721 acatacaccg gttcttataa gagagtagta atcatctaat gacccagttc attccttaag
     3781 aggttctaca attatgatct tttcgtgtga tgaatgtagt ctgctatctt ctaggtttaa
     3841 tgagggacat acttccggat cgatgttcca ccatcgctaa agacgatatt atgtttaccg
     3901 catacattct gattaacgaa ctaaggaata cctgtgatgt gctactggga tattcctgtt
     3961 gagaaacatc gactcagaca atttatttgc gaattggttc tacaacagcg acccacaacc
     4021 gcccatgctt catactataa ccaatcctca acgtggtctt atcaattaga aaagcagata
     4081 cttttacaat agtaaagatg tttaggaaga aatgagcctc tgaactcatt tccacacgca
     4141 gcatgactcc ttcctcaagc gtggattgct ttgatgtgtt tcgaaaaact atacctagaa
     4201 aatataagca taatgcatac atgatcatct ctgtggatgt tctttctcta ccgttcgacc
     4261 ataatcatag aataatagag aatattcaca gctgaagctt taccgttaac ttaacaccac
     4321 ctaaaactgt gtatttgatc atggtatcta attattgaag tattcacaac actgttatca
     4381 ttttatttct tttcaagttg gatctcgtaa tttggctatc ttcttttcat ttctggaata
     4441 acccattata tggcctctca ataactgaat ccccaatgct ggatcaaccc cttttggaca
     4501 taccttactg caggatccgg caaaatgaca tctccagatt ccatgcttcc catctatggc
     4561 atttaatcgc cgattagata aatcatccct tgtatctgca aaatatctgt atgcttgcga
     4621 tagagcctga ggaccaggaa attttgtatc agtagcaaca gttgggcacg cagagtaaca
     4681 taagccacac ctaatacaat aggagaactg caaatagtta tcgacatctt gtggcgtctg
     4741 tttaaattct gatagtttat tatcatccct gatgtctgca tcgttgttgt ggataaacgg
     4801 agccatttct ttgtgatgtt caaagaattg tgagaaatca gtgactagat ctcgaatgtg
     4861 cggaaagttt gaaagtggct cacatgtgat agtatcgcct tgcaactcag aaattttcgt
     4921 ataacaagcc agtttaggaa ttccattaat cttcattcca caagatccac atgaggccat
     4981 tctgcaagaa tatcttattg caatgctgct atcaaggtag ttttttgcga aaagtagtgc
     5041 gtctagtaca gtcatccatc tctgtaccgg tatctgaaat ttttcaaacc tgggcaaatc
     5101 atttctgtgg gtgttagccc ggtaaacatt cagaacaatc atttgccgag tagtatcggc
     5161 tttagttgta ttattgatct ttgtcttatc tttctgatta tttttctttt ctaacatacg
     5221 aattttttta ataatttgat ccatgtttta tcattatccg agccagttag ccataattat
     5281 agttctggta ccatatgcaa tgatcgagat tgtggcagct atagtaaata tggtaatacc
     5341 gtcttcccat agttttttct gtcgcaattc aagtaatata actctcaaac cgttaaatcc
     5401 atggatagca ataagtataa gaatagattc aaggagtatg gaatatggaa tattgtggta
     5461 atttttaatt acattttcat ataacaagct caagctaaac gatggtgtca ttagacgcac
     5521 tatgatatgc acagcaacta caaataatgc tgcaagtcct gtagtataat gtatcttcat
     5581 tatttgactt tctctgagca tcatcttaac catctttgtc ttattttcca cctgagagta
     5641 ccgtacttcc atacagcata actatcgccg ctaatattaa tgcaatccat atcccagatc
     5701 tttgacgata gttaagacag atggcgtcgt atccatagta tggtctccct gaattgccaa
     5761 gtcccttacc accatgtgta aatattactc ttattccatt agttgaagaa aaggtgcttg
     5821 ttccaattac caatatcaag aagatatgtc cgcctagagt ttgggtaatc tctaacatgg
     5881 cattccgagc gttttcacca cgaagcaatg aactagtttc atatacatga cctataaagt
     5941 acactagaat aaatactcca gtttgtcttt gtaaccagca agatatgcgt tcccagccga
     6001 atctcgaagg gttaagccat cctttaatcc cttctctatt ttcacggtta ttaacccttt
     6061 catttgaggt tttcatcagt acttcctcac cattggcgca tatcgtgtga atgttactgg
     6121 gtgccaggac atttctggtt gatctctagt aaggtaaccg agagtatgtt tgagaaaatt
     6181 gatgtcgtca cggttagggt agtcagttct ggcatgagcc ccccttgatt cacaacggtt
     6241 aaaagcacct gccaacacta tttcagcagt ccttaacata gaatcaatct ccataacgtt
     6301 tatgaaattt gtattatatt ctttcgcatg atcgtcgaca tgcttccagg tctgctgttt
     6361 taagtatctt attttcttta aaccttcggc tatgtctttt tcatt
//
LOCUS       DASQSJ010000033         7552 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_360093, whole genome shotgun sequence.
ACCESSION   DASQSJ010000033 DASQSJ010000000
VERSION     DASQSJ010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7552)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7552)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7552
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360093"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..298)
                     /locus_tag="VE223_00715"
     CDS             complement(149..298)
                     /locus_tag="VE223_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20143.1"
                     /translation="MIYNGIVYSSNNNNSNNANPHRSEALGGSIHMIQLDDKRDVFLT
                     ISMIA"
     gene            499..1902
                     /gene="aspS"
                     /locus_tag="VE223_00720"
     CDS             499..1902
                     /gene="aspS"
                     /locus_tag="VE223_00720"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HZC20144.1"
                     /translation="MLSELKVKLTYSIKLNTIQVLKLSELKQDELGQWRRTHYSYEVN
                     VSLTGREVIIMGWVSTIRDHGSTQFIVVRDRYSDVQVVAKKSECTEQVFEQIRQLREH
                     TTLAVRGKVRSQQKAPNGAEVIPLELKVFSIAKKAAPFLVQSKTLSVGIDTRLNLRAV
                     DLRRNVLQSVFHIRHTTLNTIRDFLVKEGFIEINTPKMIATATEGGATLFPIFYYDRE
                     AFLAQSPQLYKEQLTMAFENVFEIGPIFRAEPSRTNRHLSEATSIDVEQAFVDYNDIM
                     SLLERMISHIVNSIKEKNSNDLDCLGLELPNINLPFPRHSYSNLINKLQAIGETIKWG
                     DDLSPQIMKNLPDETMNGFYFITDWPTAVKPFYVKPKSVGSERLCESFDLMYRSLEIS
                     SGSTRINRKDDLLERMRKQGLNTQAFDYHLRVFDYGVPPHAGFGVGLERLLMAFTAIE
                     NIRDVTLYPRDIDRLTP"
     gene            1949..2221
                     /gene="gatC"
                     /locus_tag="VE223_00725"
     CDS             1949..2221
                     /gene="gatC"
                     /locus_tag="VE223_00725"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HZC20145.1"
                     /translation="MISNDEIKHLGWLSRLELTDEEIVRYALQIEEVIKYLNKLDSIS
                     LSEVEPVRLKKKISELRKDDVKPFEGDALEVAKNRKNGYVKGPRMV"
     gene            2223..3677
                     /gene="gatA"
                     /locus_tag="VE223_00730"
     CDS             2223..3677
                     /gene="gatA"
                     /locus_tag="VE223_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HZC20146.1"
                     /translation="MVNLCSLTAEQVVEGVKNRHFSAVEYISQILERIEKIESQINAF
                     TIVDANGALKKALSIDKKIRDGGDEKKIGSLAGVAVGVKDNICTKGLKTTCASKILED
                     YVSPYDATVVKKLKESGAIIVGKLNLDEFAMGSTTEFSKYGATHNPWNINYVAGGSSG
                     GSAASVAALECTVSLGSDTGGSVRCPASFCSVVGLKPTYGRVSRFGLISYANSLEQIG
                     PMGKTVADTMMVMNSIAGMDDNDQTTLNDGVPKYTLQSKRNIRIGLVKELVEGIEPEV
                     SKCIYSAMDVFSKSDCKCEETSMKSVEFALASYYTIAMAEASSNLARYDNIRYGFESN
                     PDSYEWNAYFAKIRSNFGEEVKRRIITGTYVLSSKYYGKYYLKAQKVRTMLKQELSAL
                     YKIYDILIAPTMPVLPFKFGEKIDDPLKMYMIDIDTVVANLTGIPAISVPAGFSKGLP
                     IGLQIMADELQEQTLFEAASLFESTANVQRSPKL"
     gene            3679..5151
                     /gene="gatB"
                     /locus_tag="VE223_00735"
     CDS             3679..5151
                     /gene="gatB"
                     /locus_tag="VE223_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HZC20147.1"
                     /translation="MIEAIKIGLEIHCQLTGLQTKLFCSCHCDYHGKLPNTNVCPVCS
                     GLPGTLPLLNQKALEYAGLISLALDCKIPNETTFYRKNYFYLDLPKNFQLTQYNVYGI
                     TSIGIDGKLEYDGIDKEKHARIRRVQLEEDPGRLVYENNDMDGSFYTLIDYNRAGVPL
                     VEVVTEPDFTSPKDVRIFLNKFTSIVEHLEICDTKLEGSVRCDANISIGEGKRIEIKN
                     VGSFREVEKALNYEITRQKTMSIHEIEIKAETRHWDDTRKITKQSRVKEEEQDYRYFQ
                     EPDIPTVILGDEFLSSLKTKMPELPNDRKNRFISDYKLSEHVSQVLIDNKWLADFFES
                     AVKIYSSPKEIANWIVSDLMGLIDENNHHHNSQASKEEKRPELKVEARHIAELARLVD
                     QSNISRNTAKTILNQIITTGEMPSQVVEKTNSSKIDDKDLLSEAIESVFRSEKSAVSD
                     AKLNSKAANFLLGKLMQLTKGRADPKVALDLIKKKLIEPD"
     gene            complement(5168..6424)
                     /locus_tag="VE223_00740"
     CDS             complement(5168..6424)
                     /locus_tag="VE223_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HZC20148.1"
                     /translation="MTEKYEQEIEVKGHLIDSMILTKIFDKIMDLKGDFQVLEFTVGK
                     RKREPSYARLLIRGKNQHHLSALLESVYLDGAQSVSIRQVLLESAVKDMTMPDNFYST
                     TNNATQIYYNSSWIEVENMMMDKCIVLDVGRKKAVCKMIRDVKKGDMIVVGEQGIRII
                     PQERPREGIDIFQFMSSNSSSERPTQHIARKVANDICNTSEAGGKIIVVSGPVLVHSG
                     ASESLAKMIHMGYIHGLLAGNALAVHDIENALMGTSLGMHVNDGTLAIRGHRNHMQAI
                     NEVFKAGSLKEMVQKKILKSGIMYECIINNIPFVLAGSIRDDGPIPDVITDIVEAQRK
                     YKTLLKDVKMVLMLSTMLHSIAVGNMLPASVKVVAVDISQPVVTKLLDRGTTQAIGVV
                     TDVGTFLPMVVRHLQQMPIRHSKKKK"
     gene            complement(6470..6793)
                     /locus_tag="VE223_00745"
     CDS             complement(6470..6793)
                     /locus_tag="VE223_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20149.1"
                     /translation="MQYFAALKVGEKRVKSAQDLLARYTGHAMPALALKDNKDNKWEP
                     VGEENLFALVKEANGYMIAFCDKNGIAKSIAQWFNEETKNEIITKIRADQNMEEYFGR
                     LSLPV"
     gene            complement(7270..>7552)
                     /locus_tag="VE223_00750"
     CDS             complement(7270..>7552)
                     /locus_tag="VE223_00750"
                     /inference="COORDINATES: protein motif:HMM:NF024423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HZC20150.1"
                     /translation="EKRAINSILYCLPADIRSCYKTIWQEYILNKTDIAHFVHKIDKF
                     EMMLQAKQYVKQGYSYKSLVEFFNSSDKYLSIDGSKFLNLQELLHTLEN"
BASE COUNT         2464 a         1302 c         1452 g         2334 t
ORIGIN      
        1 ttacctaggc tgatagatga tgcaaagaga acaaagtgtc cacgttgtca attttatgat
       61 aaatgcataa accaagattt ggaaacaggt gaggctagag aaatggctaa agaaatagat
      121 tttctggata taaatggcgt ggtcaacttt aagcaatcat agaaattgtt aaaaatacat
      181 ctcttttgtc atccaattgt atcatatgta ttgagcctcc caaagcttca cttctatgtg
      241 gattagcatt attactattg ttattattac tactatatac aataccattg tatatcatgt
      301 cagagctcct aactagaatt tgagatggat attatacagc acattatcct acattttccc
      361 atcgttgagc actgtggaga gggacattaa catccatttt gacttaattc cgatgaacca
      421 ttatcgattt gttcgcgatt ttctgataaa gatacagtga taagtctgct gctggttatg
      481 taagtagata ctaactaggt gctgtcagaa ttaaaggtta aattaaccta ttcaataaag
      541 ctcaatacga tccaggtctt gaaattgagt gaattaaaac aagatgagct gggacaatgg
      601 agaaggactc attattcata tgaagtcaat gtgtcactta ctggcagaga agtaataatt
      661 atgggatggg tttctactat acgcgaccat ggtagtacgc aatttattgt agtaagagac
      721 agatatagtg atgtacaggt tgttgcaaag aaaagtgaat gtactgaaca ggtattcgaa
      781 caaatacgac agctaagaga acatacaact ctagcagttc gaggaaaggt tagatcgcag
      841 cagaaagcac caaatggtgc ggaagtcatc ccgttagaat tgaaggtatt ttccatagcc
      901 aagaaagcag ctccatttct ggttcaaagt aaaaccttgt ctgttgggat cgatacgaga
      961 ttgaatttga gggcagtaga tcttcgtaga aatgtattgc agagtgtttt tcatattcgt
     1021 catactactt tgaatacaat cagagatttt cttgtaaaag aaggatttat cgagataaat
     1081 actccaaaaa tgattgctac tgcaacagaa ggtggcgcca cattatttcc aatcttttat
     1141 tatgatagag aggcattttt ggcccagagt ccccaattgt ataaagaaca attgaccatg
     1201 gcatttgaaa acgtatttga aataggtcca atttttagag cagaaccatc gcgcactaac
     1261 agacacctct cagaggcaac atcaatagat gttgaacagg catttgtaga ctataacgat
     1321 ataatgtcat tacttgaaag aatgatctcg catattgtta attcaataaa agaaaaaaac
     1381 tcaaatgatc ttgattgcct tggtcttgaa ttgccaaata tcaatctacc ttttccaagg
     1441 cattcttatt ctaatttgat aaataagtta caagcaatag gggagacaat taaatgggga
     1501 gatgatcttt cacctcaaat aatgaaaaat ttgccggatg aaacaatgaa tggattctat
     1561 tttatcacag actggcctac tgctgtaaaa cctttttatg taaagccaaa gtctgttgga
     1621 tctgagaggc tctgtgaatc attcgatctg atgtaccgtt ctctcgaaat atcatctggt
     1681 agcacaagaa taaatagaaa ggatgactta ttagaaagaa tgagaaaaca aggattgaat
     1741 actcaagcat tcgattacca tcttagagta tttgattatg gagttcctcc acatgctggt
     1801 tttggagtcg gtctggagcg tttacttatg gcctttacgg caatcgaaaa tatacgtgat
     1861 gtaaccctgt atccacgaga tatagataga ttgactcctt gagaataaaa agcagatatg
     1921 gtgatggaga gaggagtata atgctgtcat gatatccaat gatgaaataa agcatctggg
     1981 gtggctttca aggctagaat taacagatga ggagattgta agatatgcac tccagattga
     2041 agaggttatc aaatacctga ataaattaga tagcatatcc ttgtctgaag ttgaacctgt
     2101 tcgtttaaag aaaaaaattt ctgaattaag aaaagatgat gttaaacctt ttgaaggaga
     2161 cgcactagaa gtcgccaaga atagaaaaaa cggttatgtg aagggtccaa ggatggtatg
     2221 agttggtaaa cctatgcagt cttactgcag agcaggttgt cgaaggcgtc aagaatagac
     2281 atttttctgc tgtagaatac atttctcaaa tccttgaaag aattgaaaaa attgaaagtc
     2341 agattaatgc atttactatt gtagatgcca atggtgcatt gaagaaggca ctttcaatag
     2401 ataaaaaaat tcgtgatgga ggagatgaaa aaaaaatagg atcacttgct ggcgttgcag
     2461 taggcgtcaa agataacata tgcacaaaag gtttgaaaac tacttgtgct tcaaagatac
     2521 ttgaagacta tgtctctcca tacgatgcaa cggtggtaaa gaaattgaag gaaagcggcg
     2581 cgatcatagt tggaaaatta aaccttgatg aattcgcaat gggttctact acagaattta
     2641 gtaaatatgg agcaactcat aatccatgga atattaatta tgttgcagga ggttcgtctg
     2701 gtggtagtgc tgcaagtgtt gcagcattag aatgtactgt atcactaggt tctgatactg
     2761 gaggatcagt aagatgtcct gctagttttt gctcagttgt agggctaaaa ccaacttatg
     2821 gccgcgttag tcgattcggg cttatctcat acgctaatag cctagagcag atcggaccaa
     2881 tgggtaagac agtcgcggat actatgatgg ttatgaattc tatagctggt atggatgata
     2941 atgatcagac tactctaaat gatggagtac caaaatatac actccaaagt aaaagaaata
     3001 ttcggattgg attagtaaag gaattagttg aaggaattga accagaggtt tcaaaatgca
     3061 tttattctgc tatggatgta ttttcgaaat ctgactgtaa atgtgaagaa acatcaatga
     3121 aatctgttga atttgctctt gcttcctact atacaatagc tatggctgaa gccagtagca
     3181 atcttgcaag atatgataat atccgttatg gatttgaatc aaatcctgat agttatgaat
     3241 ggaacgcata ttttgcaaag attcgcagca actttggcga agaagttaaa agacgtatca
     3301 ttactggaac atacgttctt tcatcaaaat attatggaaa atattatctg aaagcccaaa
     3361 aggttagaac tatgttaaaa caagaactgt cagcattata taaaatatat gatattttga
     3421 tagcaccaac tatgcctgtt ttgccgttta aatttggtga aaaaatagat gaccctttaa
     3481 agatgtatat gatagatatc gatacggttg ttgctaatct tacaggcata cctgcgatat
     3541 cagtgccagc tggatttagc aaaggtctcc ctataggatt gcagataatg gcggatgaat
     3601 tgcaagaaca gactttattt gaggcagcat cattatttga aagcacagcg aatgttcaga
     3661 ggagcccaaa actgtaatat gatagaggca ataaaaattg gcctcgaaat tcactgtcag
     3721 ttaactggcc ttcagaccaa attattttgt tcatgccact gtgattatca tgggaaattg
     3781 cctaacacaa acgtatgccc agtttgctct gggcttcccg gaacgctccc tctcctaaat
     3841 caaaaagcat tagaatatgc aggccttata tcgctcgcat tagattgcaa aataccgaat
     3901 gaaacaacat tctatcgaaa gaactatttt tatcttgatc ttccaaaaaa ctttcagctg
     3961 actcagtata acgtatatgg aattacaagc attggtatag atggaaaact tgagtatgat
     4021 ggaatagata aagaaaaaca tgctagaatt cgaagagttc aacttgagga agatccagga
     4081 aggctagttt acgaaaacaa tgatatggac ggtagctttt atacattaat agattataac
     4141 agagcaggag ttcctttagt agaagttgtt actgaaccgg attttacttc tccaaaggat
     4201 gttagaatat tcttaaataa atttacttct atcgttgaac atttagaaat atgcgataca
     4261 aaattggagg gctcagttag gtgcgatgca aacatttcta tcggagaagg gaaaagaatt
     4321 gagatcaaaa atgttggatc ctttagagag gtagaaaaag cccttaatta tgagatcact
     4381 agacaaaaaa caatgtccat acatgagatt gaaattaaag ccgagacacg gcactgggat
     4441 gatacgagaa aaataactaa gcagtcgaga gtaaaagaag aagaacaaga ttatcgatac
     4501 tttcaggaac ctgacattcc tacagtgatt ctgggtgatg aatttctgtc ttcactcaaa
     4561 acaaagatgc cagagcttcc caatgataga aagaatcgtt ttatctctga ttataaactt
     4621 tctgaacatg tatctcaagt actaattgac aataagtggc ttgctgactt ttttgagtct
     4681 gcagtcaaga tttattcgtc accaaaggaa attgcaaact ggattgtttc tgatctcatg
     4741 ggacttatag atgaaaataa tcatcatcac aattctcaag cttcaaagga agagaaaaga
     4801 ccagaactga aggttgaagc aagacatatt gcagagctgg caaggctagt tgatcagagt
     4861 aatataagca gaaataccgc aaaaacgatc cttaatcaga taataacaac tggtgaaatg
     4921 ccgtcgcagg tagtagaaaa gaccaattct tctaaaatag atgacaaaga tcttctctca
     4981 gaagctatag aatctgtatt tagatcggag aaatctgctg taagtgatgc aaaattaaat
     5041 tccaaggctg ccaacttttt gcttggtaag ctgatgcagt taacaaaagg aagagccgat
     5101 cccaaggttg cacttgattt aataaagaaa aagttaattg agccggatta atttttatat
     5161 tcgtccttta ttttttcttc ttggagtgtc taataggcat ttgttgtaga tgtcgtacta
     5221 ccattggcaa gaaagtacct acgtctgtta caactccaat agcttgggta gttcctctat
     5281 cgagaagctt tgttacaact ggctgactta tgtcaacagc aacaaccttg accgatgctg
     5341 gcagcatgtt tcctacagca atagaatgca gcattgtaga tagcatcaaa accattttta
     5401 catcttttag taatgttttg tattttcttt gtgcttcgac aatatcggtg atgacgtcag
     5461 ggatcggccc atcgtctcta attgatccag ccaatacgaa tggaatattg ttaattatgc
     5521 attcgtacat tataccactt tttaaaatct ttttttgaac catctctttc aaagagccgg
     5581 ctttaaagac ttcgttaatt gcttgcatgt gatttctgtg acccctgatt gcaagagtac
     5641 catcattgac atgcatcccc aatgacgttc ccattaatgc gttctctatg tcatgaactg
     5701 caagagcatt gccagccaac agcccatgta tatatcccat gtgaatcatt tttgcaaggg
     5761 attctgaagc acctgaatga acaagcactg gtccagaaac tacgattatt tttccacctg
     5821 cttcgctagt gttacaaatg tcatttgcga ccttccgagc gatatgttgt gtaggtctct
     5881 cgctagaact attgctactc ataaattgaa aaatgtcaat accttcacgg ggacgttctt
     5941 gtggaattat tcttattcct tgttctccaa caactatcat atctcctttc ttcacatcgc
     6001 gtatcatttt acatactgct ttctttctcc caacatctaa tactatacac ttatccatca
     6061 tcatattttc aacttcaatc catgaactat tatagtaaat ctgcgtggcg ttatttgtcg
     6121 tgctgtaaaa gttatcaggc atagtcatat ctttgacagc tgattcaagc aaaacttggc
     6181 gaatagatac agactgtgct ccgtctagat atactgattc taataacgca gacagatgat
     6241 gttgattttt gcctctaatt agaagacgag cataacttgg ttctctcttt ctctttccga
     6301 cagtgaattc aagaacttga aagtcgcctt taagatccat aattttatca aagatttttg
     6361 ttagtatcat tgaatcaata agatggccct ttacctcaat ttcttgttcg tatttttctg
     6421 tcaactacta aaacaattta tttatatctt tttgctactt aagtattaat tatactggaa
     6481 gtgatagcct accaaaatat tcctccatat tctggtctgc cctgatttta gtaatgatct
     6541 cgttctttgt ttcctcattg aaccattgtg caattgattt tgcaatacca tttttatcac
     6601 aaaacgctat catgtagcca tttgcctctt taactaaggc aaataagttc tcttctccga
     6661 ccggttccca tttgttatcc ttgttgtcct ttaaagcaag agcaggcata gcatggcctg
     6721 tatatctagc caaaagatct tgggcagatt ttacacgctt ttcacctacc ttgagggcag
     6781 cgaagtattg catagtacta tagtttaata aaaatggctt ttaaagcatt acgatcgtac
     6841 tcaaagttta catgtaatat cccgccttat agcggttatt ttgtattcgg cttctcttga
     6901 taacatcgtt atgcgtgtgt tctaatcatc taattctgct cgtcctgttg tgccaaagcc
     6961 ttgctctttt ccaagctatt attataacta ataccataac tccttacttg agcaaaccct
     7021 atctgacctt agtcataata tcgaagctga gtggcgagtt tagaatttaa cactaattat
     7081 atggtatgct taaggaattt aacaccctat gacatacgtg aaatgtgtgc tgaacaaaaa
     7141 acttgtggat tggtggtgct gccaacttat cgagtagtct acaattgtga tgactgcctt
     7201 ggatattgca aagtgttaac taaagtaagc tactaactag caaagatcgc cctttgtagt
     7261 cgataacttt taattttcaa gagtatgcag gagttcttgc agatttagaa atttgctccc
     7321 gtcaatactt agatacttat cactggaatt aaaaaactca acaagtgatt tgtaagaata
     7381 accttgtttg acatactgct tggcctgtag catcatttca aacttatcta ttttatgaac
     7441 aaagtgagca atatctgttt tgtttaatat atattcttgc catattgttt tataacatga
     7501 acgaatatct gcaggtaagc aatataatat agaatttatt gctctctttt ct
//
LOCUS       DASQSJ010000034         5535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_322872, whole genome shotgun sequence.
ACCESSION   DASQSJ010000034 DASQSJ010000000
VERSION     DASQSJ010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5535
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_322872"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1137
                     /gene="purM"
                     /locus_tag="VE223_00755"
     CDS             88..1137
                     /gene="purM"
                     /locus_tag="VE223_00755"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HZC20151.1"
                     /translation="MTYSRVGIDVKKIHEVQKSIGDIISLTHTLPTIGNVISGFGHYA
                     GLIDIGSKTLALHCDGVGTKVIIAQMMSRFDNIGIDCVAMNVNDIICIGAHPIAFIDY
                     IALRSTNQHIVQEIAKGLVKGARQSDMAIIGGETAILPDLIAGEDRNAFDLVGMVLGI
                     VDKSDLILGDKIAIGDIILGVESSGLHSNGYTLARKVLLSKHSIYDTTPHLIRTVGEE
                     MLTPTMIYVKPVIEILKQKHILVHGFAHITGGSFTKLARLNKNVRYNLDNLPKAYGIF
                     KQIQIDGHIKTKEMYKTFNMGIGLCVILPKHSVDAVISIFKKHDMRCYQIGIVDEKDK
                     NMTVIANIDGKNEAL"
     gene            1324..2943
                     /locus_tag="VE223_00760"
     CDS             1324..2943
                     /locus_tag="VE223_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine(34) 5-carboxymethylaminomethyl
                     modification radical SAM/GNAT enzyme Elp3"
                     /protein_id="HZC20152.1"
                     /translation="MLINLKPSCVSAEADPNYNQACESIAKQIQKENISSKSVFKIIK
                     ETSAKYHLSTLPRNENIIKYLSDDSHYRKVLMVKPTKTASGVVVIAVMPKPFECPHGR
                     CIYCPGGVEFNTPLSYIGSEPSTKSAQKFEYDPYKQVQSKLYQLHARGHDISKVELVI
                     VGGTFPFMPEEYQKDFAKLCFEALNETRCASLEQAIITNETAKNRCVGLTVETKPDYC
                     KQQHIDLMLELGVTRVEIGIQSLRDEVYRIINRGHTLADVIKSFQVARNAGYKIVAHM
                     MPGLPNSSPEKDIQDFQTLFDDPCFKPDMLKIYPTLVVKHTGLYKLYQQGRYHPYSDN
                     DLMTVLLAVKKMIPPWVRIMRVQREIEPKDIVAGPKNGNLRQMALQKLDEMGFRCRCI
                     RCREIGLQRRCLSEEQIVMSRIDYLASNGQEVFLSIESADKLTILGFLRLRKITNPCR
                     KELKEYSNDAAAIVRELHIYGQMLNVGKRGNDKSCQHKGYGARLMMEAEKIAKAEFGA
                     KKLSVISAVGTREYYKKLGYVQNGPYVSKVI"
     gene            2949..4568
                     /gene="lysS"
                     /locus_tag="VE223_00765"
     CDS             2949..4568
                     /gene="lysS"
                     /locus_tag="VE223_00765"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0017101 - aminoacyl-tRNA synthetase
                     multienzyme complex [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HZC20153.1"
                     /translation="MTDGIIGKGTWIDKVADNLLKREKKLGRTVDLIRVESGIGASGI
                     PHIGSMGDAVRAYGIAMALKNFGYNSELIAYSDDMDGLRKVPAGLPRWLEEHLAKPVS
                     RIPDPFGDCHTSYGAHMSSILLDGLDKIGVKYRFQSGAETYKRGDLVNQIDTILKNSV
                     SLGQKIAEFIGQEKYNETLPYFPICKSCGRLYVAKAEKYFADEKKVQYTCSGSKIGNQ
                     ELKGCGYSDQVDINEGEGKLAWKVEFAARWQALDIRFEAYGKDIMDSVRVNDWVANEI
                     LGYAHPSHVKYEMFLDKRGKKISKSAGNVLTPQMWLRYGTAESILLLLFKRISGSRHV
                     GLDDIPALMDEYDIYEDIYFDKIREENQVKLTKIKGIYEFVNHLKPPKQPTVHVPYRI
                     LVQQASLFSSDKRTDKIYERLKKYGIVKEKTDDLLKKIELASNWSDDLFSTEEKFQIE
                     MKDNHKNAIAELIQSLKSFIGSEQKPESPKNLQSKVFDIARNNGIEPKELFTLLYKML
                     INSDRGPRIGSYVLDLGVDRTINILQKHLVN"
     gene            4620..5033
                     /locus_tag="VE223_00770"
     CDS             4620..5033
                     /locus_tag="VE223_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20154.1"
                     /translation="MRRKFAQKPPMIVIAGSCIYFEKERQKIMEFIGELEWGSHTTSK
                     CECSSTGSAMGWDFFQIYFDPEFLEKLIEVHPDIEREEGHMIEQQFVQWLSKQLKKKK
                     MEYYLKLSDVPYEMTNGFRLNPEYYRDDKELEELR"
     gene            complement(5236..5505)
                     /locus_tag="VE223_00775"
     CDS             complement(5236..5505)
                     /locus_tag="VE223_00775"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HZC20155.1"
                     /translation="MITIQLLGGAKKAVGQSCVSLDRSSASIAEILKLLKDRAVQPKI
                     LDPSNILVTLNGADSAMLRGDDTTVKTGDIVTIVTVVHGGNDNKL"
BASE COUNT         1962 a          933 c         1113 g         1527 t
ORIGIN      
        1 ataaagttac gtgtgtaaaa cctgtacacc atcataagat taattagaat tagttttgta
       61 tcattgtccc atttgaaatc aaaaagaatg acctacagtc gtgttgggat agatgtaaaa
      121 aagatccacg aagttcagaa atcaattggc gatataattt ctcttactca caccttacct
      181 accattggaa acgttatttc aggttttgga cattatgcag ggttgattga tataggttct
      241 aaaacccttg ctctgcattg tgatggagtg ggaacaaagg tgattatagc ccaaatgatg
      301 agtcgttttg ataatatagg aattgactgt gttgcaatga atgtcaatga cattatttgt
      361 attggtgcac atccaattgc atttatagat tacattgctt tgagatctac aaatcaacac
      421 attgtacaag agatagcaaa aggtctggtt aaaggagcaa gacaatctga tatggccata
      481 attggaggag aaactgcgat tttacctgat ctcatcgctg gagaggatag aaatgccttt
      541 gaccttgttg gcatggtact tgggattgtt gacaagtccg atctcatatt gggcgataaa
      601 atcgcaattg gcgatataat tttaggagta gaaagcagtg gcctgcattc aaatggttat
      661 acattagctc gtaaagttct tctttcaaag cactcgattt atgatacaac gcctcattta
      721 atccgtactg tgggagaaga aatgctcacc cccaccatga tatacgtcaa acctgttatc
      781 gaaatattga aacaaaaaca tattttggtt catggtttcg ctcatatcac tggcggatca
      841 tttacaaagc ttgcgcgtct aaataagaat gtaagataca accttgacaa cctaccaaag
      901 gcatatggaa tattcaaaca gatacaaata gacggccata ttaaaacaaa agagatgtat
      961 aaaacattca atatgggaat tggtctttgt gtaatactcc caaagcattc ggtcgatgca
     1021 gtcatcagca tatttaagaa acacgatatg agatgctatc agataggaat agttgatgaa
     1081 aaagataaga atatgactgt catagctaat atagatggaa aaaatgaagc attataggat
     1141 gccaattcca agatattagt taccctcatt tacactggtt tattcagatg attcattgct
     1201 agtgatctaa tctactatgc atacatttct aatttacttt aaaaaatatt gtcatctttg
     1261 aaattcaaca ctatgcaacc tctatacaaa aattaatatt cgttatgaaa tgaattttat
     1321 aaattgctga taaatctgaa acctagttgt gtatctgctg aagcagatcc taattataac
     1381 caagcctgtg aatcaattgc taagcaaatc caaaaagaga acatatcatc caagtctgtt
     1441 tttaaaatta taaaggaaac atcagcgaag tatcatcttt ctacgttacc tagaaatgaa
     1501 aatataatca aatatctctc tgatgatagc cattaccgaa aagttttgat ggttaaacct
     1561 accaagacag cttcaggcgt agtagtaatt gcagtaatgc cgaaaccatt cgaatgccct
     1621 catggtagat gcatatattg tccaggcgga gtcgaattta atactccatt aagttacata
     1681 ggttctgaac cttctacaaa atctgcccaa aaatttgaat atgatccata caaacaagtc
     1741 cagtcgaagt tatatcaatt gcacgcaaga ggacatgata tcagcaaggt cgaacttgta
     1801 atagtcggtg gtacctttcc tttcatgcca gaagaatatc aaaaagattt tgcaaagtta
     1861 tgctttgagg ccctgaatga aacaagatgt gcaagtctcg aacaagcgat cataactaat
     1921 gagactgcaa aaaacagatg tgtaggtctt acagtagaaa cgaaaccaga ttattgtaag
     1981 caacaacata ttgatctaat gcttgaatta ggagtaacac gcgtagaaat aggtattcaa
     2041 tccttacgcg atgaagttta tcgaattatc aatcgcggtc atactttggc ggatgttata
     2101 aaatcatttc aagttgcacg caatgcaggc tataaaattg ttgctcacat gatgcctggc
     2161 ctgccaaatt catcgccaga aaaggatata caggattttc agacattatt tgacgatcca
     2221 tgttttaaac ctgatatgtt aaagatatat cccacacttg ttgtgaagca tacagggtta
     2281 tacaaactat accaacaggg caggtaccat ccatattcag ataatgattt aatgaccgtg
     2341 ttgcttgcag taaaaaagat gataccgcca tgggtaagaa taatgcgggt tcaacgggag
     2401 atagaaccta aagatatcgt cgctggcccc aagaacggaa acctaaggca gatggcatta
     2461 cagaaattag atgagatggg tttcagatgc aggtgtataa gatgcagaga gatcggattg
     2521 caaagaagat gtctttctga ggaacaaatt gtaatgagca ggattgatta tctagcttca
     2581 aatgggcaag aagtattctt atctattgaa agcgcagaca agttaaccat cctagggttt
     2641 ttgcggctac gtaaaattac gaatccatgc agaaaggagc tgaaagaata cagcaacgat
     2701 gctgctgcaa ttgtaaggga attgcatata tatggccaaa tgttaaatgt cggaaagcga
     2761 ggaaacgaca aatcctgtca acataaagga tacggggcac ggcttatgat ggaagcagag
     2821 aaaattgcaa aggctgaatt tggggcgaaa aaattgtcag tcataagtgc agtaggaaca
     2881 agagaatact acaaaaagct tggatacgtt cagaacggcc cttatgtatc aaaggtaatt
     2941 tagttacaat gacagatgga ataataggta aaggaacttg gattgataag gtggccgata
     3001 atcttctaaa acgtgaaaaa aaattaggac gaacagtaga tctgatcagg gtggaaagcg
     3061 gtataggggc ttctggaata ccacatatag ggagcatggg tgacgctgtt agagcatatg
     3121 gaatagcaat ggctctcaaa aactttggtt acaattcaga attgatagca tactctgatg
     3181 acatggatgg gttaagaaaa gttccagccg gtttacctag atggcttgaa gagcatttag
     3241 caaagccagt ttcaagaatt cctgatcctt ttggcgactg ccatacgtca tatggcgctc
     3301 acatgagcag catacttttg gatgggctag acaagattgg cgtaaaatat cgcttccaaa
     3361 gtggagcaga aacttataag agaggagatc ttgttaatca aattgatact atattaaaaa
     3421 atagtgttag tcttggccaa aaaatagctg aattcatagg ccaagagaag tataatgaaa
     3481 cactgcctta ttttccgatt tgtaaaagtt gtggcaggct atacgttgca aaggctgaga
     3541 aatatttcgc tgatgaaaag aaagtacagt atacatgctc tggaagcaaa attggcaacc
     3601 aagagctgaa aggatgcgga tacagtgatc aagttgatat aaatgaaggg gaaggaaaat
     3661 tagcatggaa agtggagttt gcagcaagat ggcaagccct agacatccga ttcgaggcct
     3721 atggaaaaga tatcatggat tctgtaagag ttaatgattg ggttgcaaat gaaattctcg
     3781 gctacgcaca tccttcgcat gtaaagtatg agatgttcct tgacaagaga ggtaaaaaga
     3841 ttagcaaatc tgcaggcaat gtccttactc cgcaaatgtg gttaagatat ggcaccgccg
     3901 agtccatact actgctactg ttcaaacgta tatcaggcag tagacacgtt ggacttgacg
     3961 atatacctgc attgatggat gaatatgata tctatgagga tatatatttt gataaaatta
     4021 gagaagaaaa tcaagtcaaa ctaaccaaga taaaaggaat ttatgagttt gtcaatcatc
     4081 taaaaccgcc aaagcaacct acagtacatg taccatacag aatccttgta caacaggcat
     4141 cattattctc tagtgataaa agaaccgaca aaatatacga aagactaaaa aaatatggca
     4201 tagtaaagga aaagacagat gatctgttaa aaaagattga gcttgcatct aactggtcag
     4261 acgatctctt ctctaccgaa gaaaaatttc aaattgaaat gaaagataat cacaagaacg
     4321 caattgcaga attaattcaa tctctaaagt cattcatcgg ttctgaacaa aaaccagaat
     4381 cacctaaaaa tttacaatcc aaagtatttg atatagctag aaacaatgga atagagccta
     4441 aagaactctt caccctgctt tataaaatgc tcataaactc agatagaggg ccaagaattg
     4501 gaagctatgt ccttgacttg ggggtcgatc gaacaattaa tattcttcaa aaacacctag
     4561 tcaattaggc aatatataaa gtttatatta aatgctgtca atttaatatt agagtcaagt
     4621 tgagaagaaa atttgcccaa aaaccgccta tgattgtaat tgcaggctca tgcatatact
     4681 ttgagaaaga aaggcaaaag ataatggaat ttataggcga acttgaatgg gggtctcaca
     4741 caacaagcaa atgcgaatgc tcttcgactg gtagcgctat gggttgggat ttctttcaaa
     4801 tttactttga tccagaattc ctagaaaagc taattgaagt ccatccagat atagaaaggg
     4861 aagaaggtca catgattgag cagcaatttg tacaatggct ttcaaaacag cttaagaaaa
     4921 agaagatgga atactatctg aagctaagcg atgtgccata tgagatgaca aatggtttta
     4981 gactaaatcc ggaatattat cgggatgaca aagaacttga agaactgcgt taataattag
     5041 cgtgcaaata tatataagct aatagagaca atagattttt cgactataaa ctgcaagaat
     5101 tttatcattg tcacatttga ttgacataaa taagtggcgc atgcactgta aagatatata
     5161 attaccaata agtactctaa acgatttatg ccatcaacct agaagatcta gaaaaaaatt
     5221 agtatggtta acaattcaca atttgttgtc attgccgcca tgaactacag tcacaattgt
     5281 cacgatatcc ccagttttta cagtagtgtc atctccgcgt aacatggcag agtcagcacc
     5341 atttaatgtt accaagatat tgctaggatc caagattttt ggctggacag cccggtcttt
     5401 caataatttt aatatttctg ctatcgaagc agaagaccta tccaagctaa cacaggattg
     5461 gccaactgct tttttggcgc cgccaagaag ctgtatagtt atcattataa ttactcttct
     5521 tctattatct cagac
//
LOCUS       DASQSJ010000035         4803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_163459, whole genome shotgun sequence.
ACCESSION   DASQSJ010000035 DASQSJ010000000
VERSION     DASQSJ010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4803
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163459"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..561)
                     /locus_tag="VE223_00780"
     CDS             complement(<1..561)
                     /locus_tag="VE223_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC20156.1"
                     /translation="MVDYDISIVGGGPAGLSAACAAAKSKAKVILFEKDQSIAHNIRT
                     SGVTWIEEIERLGISKEYYNPIKNYTFISPSNEVTIRGSTAKSCVLNVRSVYQHLAVL
                     AAEAGSEIMIKSNVTNVVLGSKNRISGLKVGTPKGEIVIGSKLVIDASGFNSSVAQRL
                     GLVNRWKRYGIGAEYECYCENVDSETW"
     gene            complement(574..1902)
                     /locus_tag="VE223_00785"
     CDS             complement(574..1902)
                     /locus_tag="VE223_00785"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HZC20157.1"
                     /translation="MEDTCYLAVREAENMGAEYAEAFMTENKGSEVLIENNDLKQLKY
                     HKSVGLGIRVLIGSSLGFSSINSSEREHINDAAIKAIKLARISPADKYNSIPKNSKIE
                     LLEGIYDKNAESFTLYDATKMASDMLNAAKSFDDRVSIDSGNFTNSITTHVLLNSTGI
                     RAEETVTSFSWSIMGMAIDDKEVSNFDFRFGGTHHVKDIDVFSTGREFAETVVNSLGP
                     RKIESFRGKMLLTPTAATELIQDVIAYSINSSMVQKGASKFGGKIGKYVSSDLLTLED
                     DATDINSLGASSFDREGVPHRRNIIIENGILTKFIYNTYTANKDNMESSGNAGGSPKI
                     PPMVSATNIIIKPGKPKLEDLISRIDRGIIVNRFSGNVNPANGDFSGVVKGGHYIKKG
                     NNEYPVKEVMVAGNIFDALYDLVGISKERKVLADSILPYMLFDNISFTAG"
     gene            complement(1908..3317)
                     /locus_tag="VE223_00790"
     CDS             complement(1908..3317)
                     /locus_tag="VE223_00790"
                     /inference="COORDINATES: protein motif:HMM:NF039907.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TldD/PmbA family protein"
                     /protein_id="HZC20158.1"
                     /translation="MTDSLIIDDLRFVISKSKGVKYVETRYHSRIVNEVIFSNGELEM
                     IRTVQNSGCGIRVLVDGCWGFSSTNVLSKMTLVDSLSEAIAAAKLLAETKKKKVIGLA
                     QSNDIKGLFKTKVNGDLHSVDIEQKVKIAKEAEIQARKYSETIKSASCTYHEILDHKI
                     IVNSDGVEVEVYDSKPEFNVVSVARRGSESVTTSEGIGVTGGWNDLFSKKDPFDYAIL
                     ASEKATKMLEARHVTGEKTTIILDPGMVGLICHEAIGHMVEADFVLSGSVVKDKMGQK
                     VASELITLVDSGQSNIAANAAGTIAIDDEGIIAGRIVIIENGILKSFLHNRETALIFD
                     TMPTGNARAFEYNDEPLIRMRNTFIEPRNDNLDDIIKETKYGYLIKGPRSGQADANGE
                     FMFGSQEAYSIQNGEVKELMKGTSISGNAFDVLESVDMVGNDFEYDIGTGYCGKFQPA
                     KVDGGGPHIRCTALLGGLQ"
     gene            3745..4746
                     /locus_tag="VE223_00795"
     CDS             3745..4746
                     /locus_tag="VE223_00795"
                     /inference="COORDINATES: protein motif:HMM:NF037020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HZC20159.1"
                     /translation="MDIVPAVPAPEFKGIKVWANSKPLSIKDLKGRVVLLDCWTHTCI
                     FCLRTIPIMKRLQEKYSKYGFQVIQAHSAEYEFATNAQNVYKALSRYNINNIPVGFDT
                     NNSTWEAYGNMYWPKHVLIDHDSFIRYEHAGYGSIQDFESRVVEILEEAGHKPAEDID
                     TSNPNDEIFDTYGMHFSGIAPEICVGYSRLRKFGNNQTMKPDKPNIVIDPGSYIDNLV
                     YLRGKWIWEREGAKICLSSKVNNPAIIIKYNSARRVHGIIGTSDGKLGRIEVKMDGNY
                     LTKEQLGKDVKLKDGISFVDVEWSFMHNLTKTEKAEIHEVQIIPRSDNIIFYTFVFG"
BASE COUNT         1486 a          979 c          751 g         1587 t
ORIGIN      
        1 ccatgtttca ctatccacat tttcacaata acactcatac tcagctccga tcccatatct
       61 cttccatcta ttgactagac ctaatctttg agcaacggaa ctattgaaac cgcttgcatc
      121 tattacaagt ttagaaccta tgacaatttc ccctttagga gtacctactt tcagtccaga
      181 aattcgattt ttagagccca gaactacatt agttacatta ctctttatca taatttctga
      241 gcctgcttct gccgctaaga cagcaagatg ctggtataca ctccgaacgt tcaatacaca
      301 tgatttagca gtgcttcctc tgatagtaac ttcgttagat ggtgaaatga aagtataatt
      361 ttttatagga ttgtaatatt cttttgaaat tccaagtctt tcaatttctt ctatccatgt
      421 tactccacta gttcttatat tatgagcaat agattgatct ttttcgaata aaattacttt
      481 tgctttagat ttagctgcag cgcatgctgc agagagtcca gcaggacctc ctcctacaat
      541 cgatatgtca taatctacca tttgtcgttc acctcaaccc gcagtgaaag atatattatc
      601 aaacagcata taaggcagaa ttgaatctgc aagaactttc ctttcctttg aaatacctac
      661 aagatcatat agtgcatcaa aaatattgcc agctaccatt acttctttta caggatactc
      721 attatttccc ttcttaatat aatgccctcc ttttactacg cctgaaaaat ccccatttgc
      781 aggatttaca tttccagaaa acctattaac tataatacct ctatcgattc tcgaaattaa
      841 atcctccaat tttggttttc ctggcttgat gataatattc gtagcagaca ccattggcgg
      901 gatctttgga gaacctcctg cgttaccact gctttccata ttgtctttat tggctgtata
      961 cgtattgtat atgaatttcg ttaaaattcc attctcgata ataatattac gtctatgggg
     1021 aacaccttcc ctatcgaagc ttgaggctcc caagctgttt atatcagttg catcatcctc
     1081 aagggtcaag agatctgaag atacatactt accaatcttc cctccaaatt tacttgctcc
     1141 cttctgcacc atagaggaat taatggaata tgctattaca tcttgtatta actctgttgc
     1201 ggctgtagga gttagtagca tttttcctct aaagctctca atttttcgcg gtccgagcga
     1261 attcacaact gtttcagcaa attctctgcc tgttgaaaat acatcgatat ccttaacgtg
     1321 gtgggtaccg ccaaatctga aatcaaagtt ggaaacctct ttatcgtcaa ttgccattcc
     1381 cataattgac caagaaaatg aagtgacagt ttcttccgct cttataccag tggaattcaa
     1441 cagtacatga gtcgttatag aatttgtaaa attgccgcta tctatgctca ctctatcatc
     1501 aaaagatttt gctgcattca acatatccga tgccatttta gttgcatcat acaaggtgaa
     1561 cgattctgca tttttatcat atataccttc aagaagttcg atcttagaat ttttaggtat
     1621 tgaattgtat ttgtcagctg ggctaattct ggctagttta attgctttta tagctgcatc
     1681 attaatatgt tctctttctg aagaattaat tgatgaaaaa ccgagtgaac tacctataag
     1741 caccctaatt cccagtccaa cgctcttatg atattttaac tgttttagat cattattttc
     1801 aattaaaact tctgatccct tattttcggt catgaatgct tctgcatatt cagctcccat
     1861 gttttctgct tcccttactg ctaaataaca ggtgtcttcc atcttagcta ttgtaaacct
     1921 cccagaagtg cagtacacct aatatgaggt ccaccaccat caacttttgc tggctgaaat
     1981 tttccacaat atcctgttcc aatatcatat tcgaaatcat ttccaaccat atcaacagat
     2041 tccaatacat caaaagcatt tccagaaata ctggtgccct tcatcaattc tttcacttca
     2101 ccattttgaa tagaataagc ttcttgagaa ccgaacataa attctccatt cgcatcagct
     2161 tgaccacttc ttggaccttt tatcaaatac ccatatttgg tttcctttat aatgtcatca
     2221 aggttatcat ttctgggttc aatgaaggta tttctcattc ttataagtgg ttcatcatta
     2281 tactcaaatg cccgtgcatt cccggtcggc atagtatcaa aaatcaatgc agtttcacga
     2341 ttatgcaaaa aggactttag aatgccgttt tcaataataa caattctgcc agcaataatt
     2401 ccctcgtcat ctattgcaat agttcctgca gcatttgcag caatgtttga ttgtccactg
     2461 tctaccaatg taatcaactc gctagcaact ttttgtccca ttttatcttt gactacagag
     2521 cccgagagaa cgaaatctgc ttctaccatg tgaccgatcg cttcatgaca tatcaaaccc
     2581 accatccctg gatccaaaat aatagttgtc ttttcaccag ttacatgcct tgcttcaagc
     2641 atttttgtcg ctttttctga tgctaaaata gcataatcaa agggatcttt ctttgaaaat
     2701 aaatcgttcc atccgcctgt aactccgatt ccttctgagg tagttacact ttcgcttccc
     2761 ctacgagcta cagatacaac gttaaactca ggtttagagt cataaacttc tacttctaca
     2821 ccatcactat taactataat tttatggtct aaaatctcat ggtaagtaca ggatgcagac
     2881 tttatggttt ccgagtactt tctagcttga atttccgctt cttttgcaat ttttaccttt
     2941 tgttctatgt caacactatg taaatctcca tttactttag ttttaaaaag ccctttaata
     3001 tcattagatt gtgcaagtcc tatcaccttc ttctttttag tttcagcaag taattttgct
     3061 gccgctattg cctctgaaag agaatctact aatgtcatct tggacaaaac atttgtgcta
     3121 ctaaaacccc agcaaccatc aaccaaaact ctaatcccgc agccagaatt ttgaacagtc
     3181 cgaatcattt caagttctcc attactgaaa atcacttcat ttacaattct tgaatgatag
     3241 cgggtttcaa catattttac acctttactt tttgaaatta caaatcgtaa atcatcaatt
     3301 attaacgaat ctgtcattct tatcagggca agtgatcata gccatcaaat atgtttatct
     3361 aaatatgaac gtgaacttat ggattagatt ataaatagat ctcatccata aattaggtat
     3421 tcatcgacca catttccagt aaaccgttag ggaaggcatg aaaaaccacg aagggtaaaa
     3481 taaagcaatc atcaagatag aacttgaatt ttgttaggat agacattgat cccttataat
     3541 ttttaatatt aaagttaaga acacaacgtg ttcaattttc aagaattaat aaataagtca
     3601 tctgtagtga tatagtggtt ggaaaaatta tattataaaa ttaagagaaa ttgcagtaca
     3661 attcacatgt tgacagggtt ttacattatt attatcgtta tttgtactgt caacaacgac
     3721 aactgaaatt atataggata tcaaatggat attgtccctg ctgtccctgc tccagaattt
     3781 aaaggtatta aagtatgggc aaattcaaaa ccactttcaa tcaaggatct caaaggaaga
     3841 gttgttctat tagattgttg gacacatacc tgtatatttt gtctacgtac cattcctata
     3901 atgaaacgtc tgcaggagaa atattcaaaa tatggatttc aggtaatcca ggcgcattct
     3961 gcagaatatg aatttgcaac caatgcccaa aacgtttaca aggcgttatc acggtataat
     4021 ataaataata tcccagtagg atttgacact aataacagta cgtgggaagc atatggcaat
     4081 atgtactggc ctaaacatgt actcattgat catgatagct ttatccgtta cgagcatgcg
     4141 ggttatgggt caatacaaga ctttgaaagc agagtagtag aaatattaga ggaagcaggt
     4201 cacaaaccag ctgaagacat tgatacatcg aatccaaatg atgaaatttt tgatacatat
     4261 ggaatgcact tctctggtat tgcacctgag atttgtgttg gttattccag gcttaggaag
     4321 tttgggaata atcagacaat gaaacccgac aagccaaaca tcgttattga tcctggttct
     4381 tacatcgaca atctagttta ccttcgtggt aaatggatat gggaacgcga aggagcaaaa
     4441 atctgtctca gtagtaaagt aaataatcct gcaataataa taaaatataa ttctgcaagg
     4501 cgtgtacatg gaattattgg aacttcagac ggaaagctag gacgaataga agttaagatg
     4561 gatggcaatt atttaacaaa ggaacagcta ggaaaggatg tgaaactaaa agatggcatt
     4621 agctttgttg atgtagaatg gtcatttatg cataacttga caaaaactga aaaagctgag
     4681 attcatgagg ttcaaattat tccacgctcg gataatatta tattctacac ctttgttttt
     4741 ggatagttaa gcgaagatgg attccatcct aattcctttt ctatgcacag aattaagatc
     4801 aaa
//
LOCUS       DASQSJ010000036         2727 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_519528, whole genome shotgun sequence.
ACCESSION   DASQSJ010000036 DASQSJ010000000
VERSION     DASQSJ010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2727
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519528"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VE223_00800"
     CDS             <1..279
                     /locus_tag="VE223_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylase"
                     /protein_id="HZC20160.1"
                     /translation="VLKRGGRLIIVDIGKPDNYVLRELVSFYLRYILGILAYVVAGRT
                     GLKFKTLYGTYLRWPRNSELNSLLIERFQKVEFRKAMLGGAIIIAARK"
     gene            557..871
                     /locus_tag="VE223_00805"
     CDS             557..871
                     /locus_tag="VE223_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20161.1"
                     /translation="MNWFRDSSEHIIESKNRTHRMLYCGLCQKLILKSECQKLRQDKR
                     GNMYEVKRYHYDKSSKIERAERKEEKEVKRLQELPSIELGKIINYNIARRTPSLRSHM
                     KP"
     gene            complement(1064..1303)
                     /locus_tag="VE223_00810"
     CDS             complement(1064..1303)
                     /locus_tag="VE223_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HZC20162.1"
                     /translation="MSGDQQRRGSGGFNRDFGGPKPVEKGKEYDVQITEISRKGDGIA
                     RVQGFIIFVKNGQVGQSVKIKITEIGSTFATAEIV"
     gene            complement(1509..1643)
                     /locus_tag="VE223_00815"
     tRNA            complement(join(1509..1553,1584..1590,1611..1643))
                     /locus_tag="VE223_00815"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1585..1587),aa:Leu,seq:tag)
     gene            2055..>2727
                     /locus_tag="VE223_00820"
     CDS             2055..>2727
                     /locus_tag="VE223_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HZC20163.1"
                     /translation="MYRDQPRLFGTNGVRGIFGKELTVDLIIDLSYAIASYFQKGPII
                     VGYDVRNSSPILSKLVRSALNSVGLDVGNAKLVPTPCLQYATKRLGYMGGIMITASHN
                     PPEYNGIKAIANDGVEVSREDELKIESIYYSRNFSKIGGFGRDVVNDSIIKSYIESVL
                     QLVNVQKIRSCEFKVVIDVGNGAQATAAPLLVQELGCKAIMINGSMDGNFPGRGPEPT
                     PENLQV"
BASE COUNT          908 a          486 c          521 g          812 t
ORIGIN      
        1 gtactaaaac gaggaggaag attaatcatt gttgatatcg gcaagcctga caattatgtt
       61 ctgagagagc ttgtttcatt ttacctaaga tatatacttg ggatacttgc ctatgttgtt
      121 gctggaagaa caggactaaa atttaaaact ctatatggca cttatctaag atggccacgg
      181 aactcagaac taaattcatt gctgattgaa aggtttcaaa aagtagaatt tagaaaggcc
      241 atgcttggag gcgccattat tatcgctgct cgcaagtagt ataagaatca tggttctcga
      301 gtaataactt ttgtcaaatt gctaactcga aatgtagata gaccataagt aaacgctatc
      361 atattcgtta gtgagtagag caacatggca atataatact cacaatacaa agacaatttt
      421 tgacaatgcc aagaacagca tctgcaacta ggacagtgtt acttataaaa tgggtgtttt
      481 gttaaaaaca ataagagaat tagctcaata aaatttgtca atcgagaaca ttaaagcact
      541 ttttacatag gaaagaatga actggtttag ggattcaagc gaacatatta tagaatccaa
      601 aaatagaaca cacagaatgc tatattgtgg actatgtcaa aaattaattc tcaaatcaga
      661 gtgccaaaag ctaaggcaag ataaacgagg aaatatgtat gaagtcaagc gatatcacta
      721 cgataaatct tctaaaatag aacgtgcaga acgtaaagaa gaaaaggaag taaaacggtt
      781 gcaagaatta ccaagtattg aattgggcaa aatcataaac tataatatag caaggagaac
      841 accatcttta cgatcccata tgaagccata aggatatgta atagtatttg atgtagtttt
      901 cattcatcat tgtcgcagaa ttttttatgt cgtttgtttt cgatcgtcta aaatccattt
      961 tgttactaga attataccaa agagtggaaa aattgctata aataagtacg gaaagatcgc
     1021 aacgtatatc gaaggatcaa atatgcccat ttaactatgc aacctataca atttctgctg
     1081 tagcaaaggt actgcctatc tctgtaatct ttatcttgac actctgacct acttgtccat
     1141 tctttacaaa tattatgaat ccttgaaccc tggcaatgcc atcgcccttt ctacttatct
     1201 ccgtaatctg tacgtcatat tccttacctt tctcgacagg ctttggtccg ccgaaatctc
     1261 tgttaaagcc acctgagcct cttctttgct gatcgccgct catctatcaa tccagaaata
     1321 ttgacttctc atataaatac tcaatagttt tatggtaatg attttattct tgttttataa
     1381 tcatttgctt tgcaacaaaa cacctattat tgttttggtt gacatcgtta catctcctga
     1441 tttcggaaat ttgaaaagca acgatcgatc tagaaggaat atgcagctat gaaactattg
     1501 ttgtgaggtg cggggggtgg gatttgaacc cacgaatccc taaggaacag ggttatagga
     1561 gacaatctcg tatcctggct cattctaagc ttcgcactct tatctggaga cctgcgccgt
     1621 tggccaggct tggcaacccc cgcaagttgc agttctacat gctttatttt aaaagtcgct
     1681 aaaggaacta taaggttttc tatctagaga tcatgataga taggatatct gtgaaacagt
     1741 cggaaatgaa gacaacatca gttgtaatat tgcataagag gagaaaaaag gcatgacatt
     1801 ttatgagtcg atccaagttc aggtgcgact cattgggtca tcaggtcttt ttcatatcat
     1861 aacatactcc taacgctaat gataaaacat tgtcctagca gtatgttata cagtaatgat
     1921 gcataagtta cattaagtga attaacgaac taaaaagttt tgcaactgtt actaaacaga
     1981 cataagcagc tccaaaaata cgctttgcca gaaactcatc tattctttat tgaccttgat
     2041 aatatcgact aaaaatgtac agagaccaac caaggttatt tggaacaaat ggagtcagag
     2101 gaattttcgg aaaggaactt actgtggatt tgataatcga tctttcttat gcaatagcaa
     2161 gctatttcca gaaagggcca attattgtag gatatgatgt tagaaattca agtcctattt
     2221 tgtcgaaact cgttcgttct gcattgaact ctgtaggtct agatgtcgga aatgccaaac
     2281 ttgtccctac tccttgtctg caatatgcta caaagcgcct tggatatatg ggtggaataa
     2341 tgatcacagc atctcataat cctcctgaat ataacggaat taaggctatt gctaatgatg
     2401 gagtcgaggt atcaagagaa gatgaattaa aaattgaatc tatatactac tctaggaact
     2461 ttagcaaaat tggtggtttt ggtcgagacg ttgtcaatga ctcaataata aaatcttata
     2521 tagagtcagt attacagtta gtgaatgttc aaaagatcag gtcctgcgaa ttcaaagttg
     2581 ttatagatgt aggaaatggc gcccaagcaa ctgctgctcc actgctggta caagagctcg
     2641 gttgtaaagc gattatgatc aatggtagta tggacggcaa cttcccaggt cgtgggccag
     2701 aacccactcc agaaaacctt caagttc
//
LOCUS       DASQSJ010000037         2298 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_41946, whole genome shotgun sequence.
ACCESSION   DASQSJ010000037 DASQSJ010000000
VERSION     DASQSJ010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41946"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VE223_00825"
     CDS             complement(<1..272)
                     /locus_tag="VE223_00825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20164.1"
                     /translation="MLSLLSSRIYSTSLKACAFFLYGTPGIPVEDGGGGAARDGGVEL
                     GGFVVLALMLGLLDGTEAPEAVVFTSGVPSFVTFHITPVLAYGQTIA"
     gene            334..1461
                     /locus_tag="VE223_00830"
     CDS             334..1461
                     /locus_tag="VE223_00830"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HZC20165.1"
                     /translation="MLKATNEKQQKMRAAIFYGPNSITNEEIYCCSSYHHQDQKDIWK
                     EGVILRVKACAVCGYDVRVYRGGHRKVTPPIILGHEICGETDKTITIDNGTRIKGGSR
                     VAILSIVPCLNCRYCYNKQYNLCINLKEIGSSINGGFAEFVKVPEKTIKIGGLVSVPD
                     NLSDEEAALLEPLSCCLNGLSQIGSIPKESTAVVIGDGPIGLLHLQLFKKLYNTKTII
                     VGKIPQRIQKAKSMGADATIVLAHEDDAHNEQTLDNVLKHTGGIGADIVIIATSNPKA
                     LEMSTRVAARNSKINIFAGMSNTASFSLDPNLIHYNQISITGSFGATPTTLQEAARLA
                     SDNQIDLSKIITHRYSLDNIQEAILATEKYYGLRSVINRFS"
     gene            2037..>2298
                     /locus_tag="VE223_00835"
     CDS             2037..>2298
                     /locus_tag="VE223_00835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20166.1"
                     /translation="MKDLPQLEKLLRSRVGDVFNKRFREEEFVTTLSNTVASYSELAK
                     RTGFGNAYQYMSNLLSVWNNDVLESIRDTLWRTPSQKIQELEK"
BASE COUNT          799 a          393 c          434 g          672 t
ORIGIN      
        1 gcaatggttt ggccatacgc caatacggga gtgatatgga aggtaacaaa acttgggact
       61 cctgaagtga aaacgacagc ttctggtgct tctgttccat ctagtaaccc aagcattaaa
      121 gccaatacta caaaaccacc aagttcgact cctccatcac gggccgcacc accaccgcca
      181 tcttcaactg gaattccagg agtaccatag agaaaaaagg cacaggcttt cagactcgta
      241 ctgtaaatac gtgatgaaag gagactcagc atttttgagc ctttattctg tcatttttct
      301 atttttatct gccattcaat atactcaata tatatgttga aagcaacgaa cgagaagcag
      361 cagaagatgc gtgcagccat attttacggt cctaatagta taactaatga ggaaatatat
      421 tgttgcagca gttatcacca ccaggatcaa aaagacattt ggaaagaagg agtcatactt
      481 agagtgaaag catgtgctgt atgtggatat gacgttagag tgtatagagg tggccatcga
      541 aaagttacac cgcctataat attgggtcat gagatatgtg gggagactga taaaaccata
      601 actattgata acggaactag aattaaaggt ggatcaaggg ttgcaatttt atccatagtt
      661 ccctgtttga actgtaggta ttgctataac aaacagtata acctttgtat taatctaaaa
      721 gaaataggct caagtattaa tgggggtttt gcagaatttg ttaaggttcc ggaaaagact
      781 atcaagattg gaggattagt atcagttcca gataatttaa gtgatgagga agccgcttta
      841 cttgaaccat tgtcttgctg tctaaatggt ttgtcgcaga taggttcaat tccaaaggaa
      901 agtacagcag tcgtaattgg agatggaccc ataggattac tacaccttca gttatttaaa
      961 aaattgtata acacaaaaac tattatcgtt gggaaaattc cacaaaggat acaaaaagca
     1021 aaaagcatgg gtgcagatgc aacaatagta ctagcccacg aagatgatgc tcataatgag
     1081 caaactttgg ataatgtttt aaaacataca ggtggcattg gcgccgatat agttataatt
     1141 gctacgagta atcccaaagc tctagagatg tcaacaaggg tggcagcaag gaactcaaaa
     1201 attaatatat ttgcaggaat gtcaaacacg gcttcatttt cactagatcc caacttgatt
     1261 cattataatc aaatttctat taccggtagt tttggagcta caccaactac attacaagaa
     1321 gctgctagac ttgcatcaga taaccaaatt gatttgtcga aaataattac tcatagatac
     1381 tcccttgata atatacaaga agcaatacta gctaccgaaa aatactatgg attacgttct
     1441 gtgataaaca gattttcata atgcaaaatt gaaaataaca atgatgtcta ttgccatttc
     1501 attttctgac ctatattgaa tatacagaga gcaacttatt agatgattat tgctaaatta
     1561 gagatgctta taattttcta aaaagcttag ttctgttcat gctattctat catatttagt
     1621 agagcagcat tcaaattata tttcgggtat tgggatccat actgacatca ttgcagttca
     1681 aggatcaaat attgtaatta cccattctgc tttagctaaa taatatttaa ctgaagactt
     1741 atcaaagtca aaatgaaagg agtctctgcc taggataatt atttataaaa atgggtttta
     1801 gcagttaagc taattttcaa aataaaagcc ctagtgctta acgttgaaat aacgtacatc
     1861 tcatgttagg ttatatgaca gaatatcact tcaatagcaa taccataatc gatttacgag
     1921 atgctctcaa taatgtattt ctaaactctt accaatttaa cgataaaata tataaagcat
     1981 ttaaccaagc atattcagct tgtctaacaa catttcttga acatgataac tatcttatga
     2041 aggacttgcc tcagttagaa aaattactca ggagcagagt tggcgacgta ttcaataaaa
     2101 ggttcagaga agaagagttt gttactacgc tttctaatac tgttgcaagt tattcagagc
     2161 tagcgaagag aacaggcttt ggcaatgcgt accagtatat gtctaacttg ttgtcagtgt
     2221 ggaataatga cgttctagag tcgataagag atactttatg gagaacacct tcacaaaaga
     2281 ttcaggagct cgagaaat
//
LOCUS       DASQSJ010000038         2151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_323063, whole genome shotgun sequence.
ACCESSION   DASQSJ010000038 DASQSJ010000000
VERSION     DASQSJ010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323063"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..1160
                     /locus_tag="VE223_00840"
     CDS             240..1160
                     /locus_tag="VE223_00840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20167.1"
                     /translation="MSQCQSVSEAITVKGKEPSSLSNPTLMPPANSVNLDYYGVKNKS
                     TKDIALLSNVSVLNNKEKEKQVSSITYTVKFECGVISEDAGALTPGYYDTDLSILNKQ
                     GYPITVLLNVIVNNSNQSSNSIIKTLQPQESTGISCKDILSMFNIKVQEIVEGFMIIF
                     VPLDNGVLNSLANSGAINTAPLQLHPLPDQLNLLDVRLFYSANSFASSPQNQIVNKIG
                     FSILNDVSGKIPHPMLLKTLYVTLQSQTNTIFDPEIQVKRILADKYNLSKSEETNLRV
                     KIHDVDTIPTPLLDRHAISSLQIQSETNYQ"
     gene            complement(1324..>2151)
                     /locus_tag="VE223_00845"
     CDS             complement(1324..>2151)
                     /locus_tag="VE223_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HZC20168.1"
                     /translation="WIAAQEIAKKESRTIIHAFDDAQVIAGQGTIGLELLEDLPDLSQ
                     VYIPIGGGGLAAGTAIAIKSKKPHVRIIGVESKAFPAMKESLVKGSLQNIKAGYTIAD
                     GISVKSPGELTYKIASKYIDDVMLVDDSSIVKTMFLLMERAKLVVEPSGAASLAYLLS
                     NTHLKKDENIVSLLSGGNIDMYLLGQVVAKGLMHMGRMLKIFIQLPDKPGALKTIVDG
                     IAELSVNIVEVEHDRLSANISAGTAGVYLSLEMEDEMHAERLIEFLRIKGIQFRVVS"
BASE COUNT          683 a          419 c          357 g          692 t
ORIGIN      
        1 atctgacgtg ggttagcgtt aaattaacaa ttggagtggc tatctctcgg aattgatggt
       61 aagaatttac gattatgcat aaaaccagat atctaaaaac atctagacag ccatactata
      121 aattattgaa gtttaatggt gattaaataa acaataaaat ggcatgccag tcaaataatt
      181 ccaacggatc tcgttgcatt attactagga caactttatt cgtcatggct cttattttaa
      241 tgtcgcaatg tcaatcagtt agcgaagcta tcacggtcaa aggtaaagaa ccttcttcat
      301 tatccaatcc cacattgatg cctccggcaa atagtgttaa tttagattac tatggggtta
      361 aaaacaaatc cacgaaagat attgctctgt tgtcgaacgt gtctgtacta aataataaag
      421 aaaaagaaaa acaggtcagc agtataactt ataccgtgaa atttgaatgt ggtgttatat
      481 ccgaagatgc cggtgcgctg acgccaggat attatgatac tgatctaagt attttaaata
      541 agcaagggta cccaatcaca gtactattga acgtgatagt caataatagc aatcaatctt
      601 ctaattctat aataaagaca ctacaacctc aggaatcaac aggaataagc tgtaaggata
      661 ttttgagtat gttcaatatt aaagtacaag agatagtgga aggatttatg attatattcg
      721 tgccacttga caatggtgtc ttgaactctt tggcaaatag tggagcaata aatactgctc
      781 ctttacaatt acatccattg ccagatcaac ttaacttact tgatgtacgt ttgttttact
      841 cagcaaattc ctttgcatct tctccacaaa atcagattgt aaacaaaatc ggtttttcta
      901 ttctaaatga tgtgtccggt aagattcccc atcctatgct attgaagacg ctatatgtga
      961 ccttgcagtc ccaaacgaac actatatttg atccagagat ccaagtaaag agaattttag
     1021 cggacaaata caatttatca aaatcagaag aaacaaatct aagggtcaag atccatgatg
     1081 tagacactat acctactcca ttgttggatc gacatgcaat ctcttcattg caaatacagt
     1141 cagaaactaa ttatcaatag tgtatatctt ttcgaagttc taatgatgct ctgcatatta
     1201 atggcattta tatattgaag ctgattcgag agtgttttta tcgctcttaa gggaggttca
     1261 actcgttttt atatcaatac attatatttc gaaggccgat ctatgtaata atgtatatgc
     1321 atatcaacta actactctaa attgtattcc ttttattcga agaaactcaa ttaaacgctc
     1381 cgcgtgcatt tcgtcttcca tttcaagact tagatataca cctgcagttc cagcagaaat
     1441 attagcactc aatcgatcgt gttctacttc aacaatattg acactaagct ccgcaatacc
     1501 atccactatc gtctttaatg ctcctggttt gtctggtagc tgaataaaaa tcttgagcat
     1561 cctgcccata tgcattagcc ctttggccac gacttgtcca agtaagtaca tgtcaatatt
     1621 gcctcctgaa agtaatgata ctatattttc gtctttcttt agatgggtat ttgatagcaa
     1681 atacgcaagg cttgcagctc cggatggttc tacgactagt tttgctcttt ccataagtaa
     1741 aaacatagtt ttaactattg aagaatcatc tactagcatt acgtcatcta tatatttact
     1801 agctatttta tatgtcaatt cgccaggcga tttcacagaa ataccatctg caatagtata
     1861 tcctgctttt atattctgca aagaaccctt tacaagagat tctttcatag ctggaaaagc
     1921 tttagattct acaccgatga tcctcacatg gggttttttt gacttgattg caattgcagt
     1981 acctgcggct agacctcctc cacctattgg aatatacact tgactaagat ctggcaaatc
     2041 ctctaacagt tctagaccaa ttgttccttg tcctgctatt acctgggcat catcaaaagc
     2101 atgaataatt gtacggcttt ctttcttcgc aatttcttgg gctgcaatcc a
//
LOCUS       DASQSJ010000039         2801 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_323085, whole genome shotgun sequence.
ACCESSION   DASQSJ010000039 DASQSJ010000000
VERSION     DASQSJ010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2801
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323085"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VE223_00850"
     CDS             complement(<1..444)
                     /locus_tag="VE223_00850"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HZC20169.1"
                     /translation="MKKNVTTTRGLMVGRFQPFHKGHLQLSKQILRECNELIIAIGSA
                     QFNYIYKDPFTAGERVLMIHAALLESGLDLAKCYIIPIANDENNARWLGQLKSMVPHF
                     DVLYSGNEFVKILAQQQPIRVKKPFFSKKDEYNGTNIRRHLAAAAS"
     gene            complement(452..2182)
                     /gene="metG"
                     /locus_tag="VE223_00855"
     CDS             complement(452..2182)
                     /gene="metG"
                     /locus_tag="VE223_00855"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HZC20170.1"
                     /translation="MLGSSEETKNNSSGRTSSSNKSAIVTSALPYANGEIHLGHIAST
                     YLPADIFTRFFRLLGREIYHICASDDFGTPVLIKAEKENKTPADYVDLWNKRDYEDFK
                     SFGISFDFFYKTSSKENVEFVQYVFKKLYENGHIYEQAVIQFYCQFDGKFLPDRYVIG
                     RCPNCGAENQYSDLCEKCGRVPEQILEPKCSICGRPPVKRSSKHYFFKLSNFSQQLKI
                     WLNNNENLQSDIKNYVINWINEGLQDWDITRDLSWGVPIPMPDAKGKVFYGWFDNHLC
                     YISTLTTYVRKKSHSTKTDGKKYWNDSEIYHFIGKDIVYHHYLFLPAVRMGIDEEYKL
                     PDYIPTRGHLMLHNQKISKSRSWYISLRDFIAAFNPDYLRFYIASVAPYSQVDVNFDW
                     NAFSEKINNELIANVGNFINRGLFFVQKTFDGKVPGPSSENDVDDIDSIKEIEKIADE
                     VGFLLSENELDKALRRILKFATHFNQYFQKKEPWSNKATANTTLFIAVNAVRSLAIML
                     EPFIPLSSERIWSQLGMDDSGAGSIHEQQWKSISQITIPSGHTLGKVEPIFRKIELKD
                     IEAQKSKLNM"
     gene            complement(2221..2400)
                     /locus_tag="VE223_00860"
     CDS             complement(2221..2400)
                     /locus_tag="VE223_00860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20171.1"
                     /translation="MKAERETGNLDRDDQCDYQYIDDGTIRSGHHTAAAKNNRIYPKN
                     HLDVYRCWYSIITVL"
BASE COUNT          811 a          538 c          506 g          946 t
ORIGIN      
        1 agaagcagct gctgcaaggt gcctacgaat gtttgtccca ttatattcat ccttttttga
       61 gaaaaatggc tttttgactc gaatcggttg ttgttgtgct agaattttga caaactcgtt
      121 gcccgaatat aaaacatcaa aatgaggaac catggatttt agttggccaa gccaccttgc
      181 attattctcg tcgtttgcaa taggtatgat atagcatttt gcaaggtcta atcccgattc
      241 taatagcgct gcatgtatca tcaatactct ttcaccagcc gtgaatggat ccttgtagat
      301 gtagttaaat tgtgcgctac cgatggcaat tatcaattca ttacattctc gaaggatttg
      361 ctttgagagc tgaagatgtc ctttgtggaa tggttgaaaa cggcctacca ttagaccccg
      421 ggttgttgtt acattctttt tcattttttt cttacatgtt taattttgat ttttgtgctt
      481 caatgtcctt taactcaatc ttgcggaaaa tgggctccac ttttccaagg gtgtggcctg
      541 aaggtattgt aatttgtgat atggatttcc attgctgctc atgtatactg ccggcaccac
      601 tgtcatccat tcctagctga gaccaaatcc tttcagatga gagtggaata aatggctcaa
      661 gcataattgc taaggatctc acagcgttca cggctataaa tagcgtagta ttagctgttg
      721 ccttgttgct ccatggctct tttttttgaa agtattgatt aaaatgggtt gcaaatttca
      781 agattcttct taaggctttg tctaattcat tttctgacaa taaaaaacct acttcatctg
      841 ctattttttc tatttctttg atgctatcta tatcatccac atcgttctct gaagaaggcc
      901 caggaacctt gccatcaaat gtcttttgca caaaaaatag tcctcgattt atgaaatttc
      961 caacgtttgc tataagttcg ttatttatct tttcagaaaa ggcattccag tcaaagttga
     1021 catctacctg agaatatggt gcaactgatg caatataaaa cctcaaataa tctgggttga
     1081 aagctgcaat aaaatccctt aggctgatat accaacttcg actctttgag atcttttgat
     1141 tatggagcat caagtgcccc cttgttggaa tataatccgg taatttgtac tcttcatcta
     1201 tgcccatacg cacagcaggc agaaacaaat aatgatgata aactatatct ttccctatga
     1261 agtgatatat ctccgagtca ttccagtatt tcttgccatc tgttttagtt gagtgagact
     1321 tttttcggac atatgtggtt aaagtggaaa tgtaacaaag atgattatca aaccaaccat
     1381 agaatacttt gccctttgca tcaggcattg ggattggcac cccccatgat aaatcccttg
     1441 ttatgtccca gtcctgcaag ccttcattaa tccaatttat tacgtagttt tttatgtcag
     1501 attggagatt ttcattatta tttagccata tttttagctg ctgggagaag ttagaaagct
     1561 taaagaaata atgtttgcta cttctcttaa ctggcggcct tccgcaaata gaacattttg
     1621 gttccaatat ctgctccgga actcggccac atttctcaca taaatcagaa tattgattct
     1681 cggccccaca gttaggacat cttcctatta catatctatc aggcaaaaat ttgccgtcaa
     1741 attggcaata aaactgtatt accgcctgtt cgtaaatatg accattttca tatagttttt
     1801 tgaaaacata ttgaacgaat tcaacatttt ctttagagct tgtcttataa aagaaatcaa
     1861 aagatatccc aaaggattta aaatcctcgt agtcacgctt attccataaa tctacataat
     1921 ctgcaggtgt cttgttttct ttttctgctt taattaatac aggagttcca aaatcatcag
     1981 atgcgcatat atggtaaatt tctctcccta gtagtctaaa aaatcttgta aaaatatctg
     2041 caggcaaata agtagaagcg atgtggccaa ggtgaatttc gccattggca taaggaagag
     2101 cactcgtaac tattgcactc ttattgctgc tggacgtcct gccactacta ttgttcttgg
     2161 tttcttcact agaccccagc attagtagga ttgcacatat atgatggatt ttaagttatc
     2221 tcataatacg gttattattg aataccagca acggtaaaca tctagatggt tttttggata
     2281 aattctgtta ttctttgctg ctgcagtatg gtgacctgac ctgatcgttc catcatcaat
     2341 atattgataa tcacattggt catctcggtc taaatttccc gtttctctct cagccttcat
     2401 tagcagcggt aattgtatac tgattgtggc ttgtatcgaa gattctagtt gtcgaggtcg
     2461 taacctccta tattttgggt gctaccggga attcgaacag agatgggtat aggtcaatgc
     2521 attaggggca taaaatgtgc atgaaacgaa tagacgatcg ctgtatgaat gcaataaata
     2581 gattctagtg tttaaacaat gcacctttga tattaatacc ataatacatt gccatagctt
     2641 aaataaatag ccaatgctga tccacttatt tatgcaaatg ttttatatca ccctattttc
     2701 taatataaga agattttcaa agatggcgtg gctcaaagtg gcccataaat ctgaaatagg
     2761 cgataaaaaa ggaaaagaga tcaatgttag cggcacaaga a
//
LOCUS       DASQSJ010000040         3594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_323214, whole genome shotgun sequence.
ACCESSION   DASQSJ010000040 DASQSJ010000000
VERSION     DASQSJ010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_323214"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..814
                     /locus_tag="VE223_00865"
     CDS             215..814
                     /locus_tag="VE223_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HZC20172.1"
                     /translation="MKLSDAKKDYYRKLAKEEGYRSRSAYKLEQMNNSYRIFRPSDRV
                     VDLGCAPGGWLQVASKEIGHHGKLIGIDLQEVEPIEGAIILHDNIEDHTIADRILGLM
                     NCKADVVLSDVAPNISGIWELDHAKQILLARRAFDIGAKVLRRGGIALLKVFEGELLN
                     EFKMELKHNFDRVLLSKPEASRQKSSEIYLVCLKFKGQN"
     gene            complement(1018..1872)
                     /locus_tag="VE223_00870"
     CDS             complement(1018..1872)
                     /locus_tag="VE223_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20173.1"
                     /translation="MSDNISEDLTRNLESLGWDDLVLIKRKLSTYIKGLTTSLVDVER
                     NQFRYINDSIHKEKDMLNNLIQRSKQIRTEIQINNSKLLSISERISQSKNFLGLMEYR
                     LPSEKQDHLLQILQSNQKLLDLKNYKNEREKNEILTLVKDASMKLEAIKATKVVRDQL
                     TSLGSESENINKSLKLLNEEQQSIQIKIVDINNSINRLFDAKRNLSTDRENYLNQYNQ
                     IASQLDKVNARLDMMAEMRQRQRQEYGHGLPRDALFEVKESAKKKFKSGSKLSFEELK
                     LLYGEKGP"
     gene            complement(2241..3338)
                     /gene="trpD"
                     /locus_tag="VE223_00875"
     CDS             complement(2241..3338)
                     /gene="trpD"
                     /locus_tag="VE223_00875"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HZC20174.1"
                     /translation="MSSTNFADLGPVIRKLVSRTNLTENEIRQSVNSILKGEASDASI
                     ASFLVGLAMKGETAEEIKAILQTVNEHAIKITPKVNGTLIDTCGTGGDTIKSFNISTA
                     AAIVASSAGGKVAKHGNRSFSGYCGSADFLEYVGLDLNSNPANVRQVIEKTGIGFLYS
                     PKFHPAMRNAASARKTIGIRTVFNIVGPLSNPCTNISAQLVGVFERSLLETIPVALQG
                     AYENGLAGEAMVIHAFDGFDELSNTCENDIVWLVRRQIKRIRLHPNNVNIQVAKPEQL
                     FVYSKEGSIRDTLQSIYGIASQEKEDIVVLNASAALVIGKVAKDFREGVEIARSAIKE
                     EKPRKKLAELIYYCGDRAKLAEAEKKFVYSC"
     gene            complement(3348..>3594)
                     /locus_tag="VE223_00880"
     CDS             complement(3348..>3594)
                     /locus_tag="VE223_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HZC20175.1"
                     /translation="SDAMLFESVSNPFKATRYNSLVANSKKIPECLEVTAKALDDGEV
                     MGVRHKRYLIEGVQFHPESVLTAEGPRIFRNFISMVK"
BASE COUNT         1091 a          652 c          662 g         1189 t
ORIGIN      
        1 gaacttataa ataatcgttt tgtactttta attgatggag tcatgatcaa cggtttattt
       61 ttgtaaagca gaggtcgcag aacgcattaa cgattatcta tatatagttt attcatttca
      121 tccggtgtta ttatatattt actaacgaag gcgggatata ttatataaat atatatattt
      181 cactgacaat tgtaggataa aagcagagat aaatgtgaag ttatctgatg caaaaaagga
      241 ttactacaga aaattagcaa aggaggaagg ctatcgtagc agatcggcct acaaactcga
      301 acagatgaat aattcttacc gcatatttag accttcagac agagtggttg atctaggctg
      361 cgctccagga ggctggctac aagtcgcatc aaaagagatt ggccatcatg gcaaacttat
      421 tggaatagat cttcaagagg tggagcccat tgaaggtgcg ataattttgc atgataatat
      481 agaggatcat acgatagcgg acagaatcct gggacttatg aattgcaagg cagatgtagt
      541 gttatctgat gttgctccga acataagtgg aatttgggaa ttggaccatg ctaaacaaat
      601 cttacttgct agaagagcat tcgacattgg agcgaaggtt ttaagacgag gtgggattgc
      661 acttctcaag gtatttgaag gagaattgtt aaatgaattt aagatggaat taaagcataa
      721 ttttgacaga gttttgttga gtaaacctga agctagcagg caaaaaagca gcgagattta
      781 tcttgtatgt ttgaaattca aaggccagaa ttaatccaag gataaatata atattagcat
      841 cagattagcc gcaataataa tggtactact gtatagttgt tcaaaaaggt attgaggagc
      901 agaagcatat atacaacaga tccctcagga cataactcaa cataacctca caagttcacc
      961 tcatcaataa ttctacaagc atatggtgat gctgaaggga cttcttcagc tgctcttcta
     1021 tgggcccttt tcgccataga gtagctttaa ttcttcaaag cttagctttg atccggattt
     1081 aaattttttc tttgcagatt cttttacttc aaaaagtgcg tcacggggga gcccgtgtcc
     1141 atattcttgg cgttgtcttt gtctcatttc agccatcatg tctagacgtg cgtttacttt
     1201 atctagttgg cttgcaattt ggttgtattg gtttagataa ttttcacgat ctgtcgaaag
     1261 gtttcgctta gcatcaaaaa gcctgttaat tgaattgtta atatccacaa tcttaatttg
     1321 tatactttgc tgttcttcat taaggagttt tagagatttg ttaatatttt ccgattccga
     1381 tccgagactt gttaattgat ctctgacaac cttggttgct tttattgctt caagtttcat
     1441 tgaagcatct tttaccagtg taaggatctc gttcttttct ctctcatttt tgtaattctt
     1501 cagatcgagt aatttttgat tggattgtaa aatttgaagc aaatgatctt gtttttcaga
     1561 tggcagtctg tattccatca aaccaagaaa gttcttggac tgcgagatcc tttcgcttat
     1621 ggaaagtagc ttggaattat tgatttgaat ttctgttcga atttgctttg aacgctgtat
     1681 caagttatta agcatatctt tctccttatg aatactgtcg ttaatatagc gaaattggtt
     1741 tctttcgaca tctacaagac tagtcgtcaa tccttttatg tatgtagata atttcctttt
     1801 tatcaagacc aaatcatccc atcctaaaga ttctaaattg cgagtcagat cctcgcttat
     1861 attatcactc atctcaaagt accctataat agaataatgg gaaatcattg cataaaaata
     1921 tgctgcaaaa tggtgagttg gataaatacg gtcatatttt aactgaagtt agttagttag
     1981 ttttaatttc ctcaacccaa aagcccggga gcaaatgtca gcaactttaa ttaatttgca
     2041 taaccgtata taataatggt actgctgacc aatattctat ctacttcgtc aataacataa
     2101 atagtaataa taataataat aataataata tttctcattt gagaaaaatg cgcttgatat
     2161 atgtatctgc tgaatttaga tagacaggtt aacaataaag tactgcaaag gaaaactatg
     2221 aaggaaatac attattgaaa ttagcaagag tatacgaatt ttttttcagc ttccgccaat
     2281 tttgcccgat ctccgcagta ataaattaat tcagctaatt ttttccgagg tttttcctct
     2341 tttatagcag atcttgctat ttcgactcct tccctaaagt cttttgcaac tttcccaatc
     2401 acaagcgcag cagaagcatt taaaactacg atgtcttctt tctcttggct ggcaatgcca
     2461 tagatagatt gaagagtatc tctgattgaa ccttccttag aatatacaaa aagttgctct
     2521 ggcttggcaa cttgtatatt tacgttattg ggatgtagcc gtattcgttt aatttgcctt
     2581 ctgacaagcc atacaatatc gttttcacat gtgttagata actcgtcaaa accatcaaaa
     2641 gcgtgtataa ccattgcctc ccctgccaaa ccgttttcgt atgcgccttg caaagcaaca
     2701 ggaatagttt caagtaagga acgttcaaaa acacctacaa gttgggcaga aatattagta
     2761 caaggattag ataatgggcc aacgatattg aacacagttc taattcctat tgttttcctt
     2821 gcagaagcgg cgtttctcat ggcaggatga aacttgggag aataaagaaa gcctatgcca
     2881 gttttttcaa tgacttgcct aacatttgca ggattagaat tcagatccaa tccaacatat
     2941 tcaagaaagt cagcgctacc gcagtatcca gaaaaagacc tatttccatg tttcgccact
     3001 ttacccccgg cagaggatgc aactatcgct gcagcagtac ttatgttaaa tgatttgatt
     3061 gtgtctcccc cggttccgca agtgtcaatt aatgtgccat taactttggg tgttattttt
     3121 atcgcgtgtt cattaacagt ttgaagaatt gccttaattt cttcggcagt ctctcctttc
     3181 attgcaagac ccaccaaaaa tgatgcaatt gatgcatctg aagcttctcc tttgagtatt
     3241 gaatttactg actggcgaat ttcattttca gttagatttg tcctagaaac taacttacgg
     3301 atcactggcc caaggtcagc aaaatttgtg ctggacaatt tatttattta tttcaccata
     3361 gaaatgaaat tccgaaatat cctaggtcct tctgcagtca aaacagattc tgggtgaaac
     3421 tgtactcctt ctattaagta tctcttatgt ctgactccca ttacttcgcc atcgtctaac
     3481 gccttcgcag tcacttcaag gcattctgga attttttttg aatttgcaac tagagaattg
     3541 taacgggtag ccttgaatgg attgctaaca ctctcaaaca acatagcgtc agat
//
LOCUS       DASQSJ010000041         2432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_4825, whole genome shotgun sequence.
ACCESSION   DASQSJ010000041 DASQSJ010000000
VERSION     DASQSJ010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4825"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..466)
                     /locus_tag="VE223_00885"
     CDS             complement(<1..466)
                     /locus_tag="VE223_00885"
                     /inference="COORDINATES: protein motif:HMM:NF015412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20176.1"
                     /translation="MSKAIAIIGCGTIGTELALAIDSGRVKNAFVIALFDWISQVALS
                     LQYRLRNNNPRIFTDFEEFISSPSFTDADIIVECASQDAIKRFSKKVLENGKSLIVMS
                     VGALADPHFLSELLDIASHNSARIYVPTGAIAGIDAVRSVKHLLDSVSLTTTK"
     gene            complement(581..760)
                     /locus_tag="VE223_00890"
     CDS             complement(581..760)
                     /locus_tag="VE223_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S30e"
                     /protein_id="HZC20177.1"
                     /translation="MPTHGSLTKAGKVRGQTPKIQPRPRLSPVSKVRNKNNFIKRFEK
                     RRLPGQKKPERGGRR"
     gene            1006..1569
                     /locus_tag="VE223_00895"
     CDS             1006..1569
                     /locus_tag="VE223_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HZC20178.1"
                     /translation="MPQTKPIVSIENVVASATVNQTVNLNLITQIFPDVEYHPDQFPG
                     LVFRLKSPKTATLIFSSGKMVCTGAKSEEQAIKAVRNVVQKLKKGGIPVEHEPQIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKESEVYRAVHNLHTLLEEKNLMIYES"
     gene            1701..>2432
                     /locus_tag="VE223_00900"
     CDS             1701..>2432
                     /locus_tag="VE223_00900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20179.1"
                     /translation="MMPEIWLKYGSTDIVLNIRYENLLKHVSSDFPLLNEDEIRLCLS
                     NVVLADDTLIFALSDTKLTAKIIILLLNMAQAKGFANVTIGVPQRIEHILGNNLAGKA
                     TSVNEITYQSFPNIINKFRNILFISQAIYDPLFGYGIAPTKLLRNYYLKAMSEAFNAR
                     QDNLPKPGVRGPPLKIALSNAENIQAKSIELVANSFGIVGIHYGNILEASENAIGHLD
                     SISTIEIEPSKSAIISASSEIGGHST"
BASE COUNT          753 a          458 c          448 g          773 t
ORIGIN      
        1 tttttgttgt agtaagactg actgaatcaa gtaggtgttt tacactgcgt acagcatcta
       61 ttccagctat ggcaccagta ggcacataaa tgcgagctga attatgagat gcaatatcaa
      121 gtagttccga taggaaatga gggtccgcaa gagccccaac actcattacg atcaaactct
      181 tgccattttc cagtactttt ttgctaaacc tcttaatagc atcctgtgag gcacactcaa
      241 caataatatc tgcatctgtg aaagaaggcg atgaaataaa ttcttcaaaa tcagtaaata
      301 tgcgaggatt attgtttctg agtctatatt gtaatgagag agcaacttgg cttatccaat
      361 caaaaagagc gataacaaat gcattcttta ctcttccact atcaatggct agggcaagct
      421 cagttccaat ggtcccacat cctataattg ctatggcttt agacactttg accatgaatc
      481 agacagtgta gacatttata tagtcacttc tctacttaga cgttttaatc tgatcgaaaa
      541 agaatatttt gcacaagggt attgatatta ggtataataa ctaccttctt cctcctcgct
      601 ctggcttttt ctgccccggc aacctccttt tttcaaaccg tttgataaaa ttattcttat
      661 tacgaacctt cgatactggg ctcagcctag gtctaggctg aatttttggt gtctgccctc
      721 ttacctttcc agctttagtc aatgatccgt gtgttggcat atttgtttta tccaaatatt
      781 gtcaatttaa actgttgtat ttctaaagcg atttatagtg ataatgatcg tatattcatt
      841 atcaaatgtg aacacaatgt accgtggtat tgacttcatg aaaatttcta cagttattag
      901 tggttaattc tgaaatttgt gttcctctaa aactagttaa atgtactata aagattatgt
      961 agcaggtata tatactgccc atttataaac cccattgtta ccagaatgcc ccaaactaag
     1021 cccattgtca gcatagagaa tgtagttgct tcggccactg ttaatcagac cgtaaatcta
     1081 aacttaatta cgcaaatctt tcctgatgta gaatatcatc ctgatcaatt cccaggactt
     1141 gttttcagat taaaatcgcc caaaacagct acactaattt ttagttctgg taagatggtg
     1201 tgtactgggg ccaagtcaga agagcaagcc attaaagcag tgcgaaacgt agttcaaaaa
     1261 ctaaagaaag gtggaatccc agttgaacat gagccccaga tagaaatcca gaatatcgtt
     1321 gcttctgcaa gccttggagg aaaaattcat ctggagcttg ctgctagggt gctcccaaga
     1381 agcatgtatg agccagaaca atttcctggt ctcatacata ggatgctgga tccaaagacg
     1441 gtaatcctct tgtttgcgag tggtaaatta gtttgtacag gtgcaaagaa agaaagtgaa
     1501 gtttacagag cggtccacaa tcttcatact ctgcttgaag aaaagaattt gatgatatat
     1561 gaaagctaaa tttccacagc cattttgtat ctttagatag tattcatatc tggttaaatt
     1621 caccaaattg gtattttcaa ccagtctacc ggcattttat taaatatgaa atgtatttat
     1681 tttaactgtt tcaattactg gtgatgcctg agatatggct aaaatatggc agtactgata
     1741 ttgtactgaa tattcgatat gaaaatttgc ttaaacatgt ctcttcagac tttccattat
     1801 tgaatgaaga tgaaatcaga ttatgtctaa gcaacgtcgt cttggcagat gatacactga
     1861 tttttgcctt atcagacaca aaattaactg ccaaaattat tattttactg cttaacatgg
     1921 cgcaagccaa aggatttgca aacgtaacta tcggtgttcc tcaaaggatt gaacatatat
     1981 tggggaataa cctcgctggg aaggcaacgt cagtaaacga aattacctat caatcatttc
     2041 ctaatataat taataagttt cgaaatattc tttttatttc tcaggcaata tatgatcctt
     2101 tatttggata tggcattgct cctactaagt tgttgcgtaa ttattacctc aaggctatgt
     2161 cagaggcttt caatgcaagg caagataatc ttcccaagcc aggagttagg ggtccacctc
     2221 taaaaattgc tctctctaat gcggaaaata tccaagctaa atctattgag ctggtagcga
     2281 attcttttgg aattgttgga attcattatg ggaacattct cgaggcttcc gagaatgcga
     2341 ttggccattt agactctatt tcgacaattg aaatagagcc aagcaaatct gcaattatta
     2401 gtgctagtag cgaaataggc gggcattcaa ca
//
LOCUS       DASQSJ010000042         2698 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_240963, whole genome shotgun sequence.
ACCESSION   DASQSJ010000042 DASQSJ010000000
VERSION     DASQSJ010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_240963"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..937
                     /locus_tag="VE223_00905"
     CDS             <1..937
                     /locus_tag="VE223_00905"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HZC20180.1"
                     /translation="PASATMQCGIEIEKTFDRSGIPHGVFQTIVGDSSSAETLIDADG
                     ISAVTFTGSVPVGAKVAQRATSRLKKTVLELGGSDPFIVCDDADIEKASTGAVKGRFI
                     NCGQSCIASKRFIVTKKVASEFIEKFVQKTEKLKVGDPLSDDTDIGPLVNAKSLENMQ
                     GIVNRTVKEGAELLTGGGERIKNKGYFFAPTILKNVLPHMEIAQEEVFGPVAPIITVE
                     DEKEAIRIANDSKFGLGASIWTQNLEKAERLSSMVQSGIVTVNNVVVSDPRVPFGGVK
                     NSGFGRELSRFGMLEFVNIKSVRFYDQLIYEHHVE"
     gene            1000..2289
                     /locus_tag="VE223_00910"
     CDS             1000..2289
                     /locus_tag="VE223_00910"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HZC20181.1"
                     /translation="MSDTIENVLILQGGGSLGAFGCGVFKALANSNIKLDIIAGTSIG
                     GLNASIIAGSRKEEDHPEKALEQFWLELAEGSSSIIKSNTNLNSPFIDGLKTILELKK
                     DFESFLAGRYPMSRITSSSTDTTVTSPIAAHSAITHISQIKSIQSFYDAAIHGNNKVF
                     MPRWKPEYALTDPQYFTPLEWTYLYDHSPLINTLEKYIDYNRLQPNGRPNARLIVTAV
                     NVLTSEPLIFDSSKQQITSKHILATTGYPRYYFRWVEVEKGIYAWDGSLLSNTPLREV
                     IDASPAKDKRVFLVENYPRYSERLPDNLLEVEHRTRDIMFCDKTLHNKQMAKAITYYL
                     EFINELYHVIEDRFDLENVQDKEKFEKIKTKYKKIAEDHGAQIKSLHYISRDEPFPDL
                     YENADFSIDTIKASIRDGELKTKQILNDHYRHQRNVV"
BASE COUNT          969 a          445 c          520 g          764 t
ORIGIN      
        1 acctgcaagc gcaacaatgc aatgtgggat agaaattgaa aaaacatttg atagatctgg
       61 aatacctcat ggagtttttc aaacaattgt aggagattct agctctgcag agacacttat
      121 agacgcagat ggcattagcg cagtaacgtt caccggaagt gttcctgtag gcgccaaagt
      181 tgcacagaga gctacttcac ggctaaagaa gacagtttta gaattaggtg ggagtgatcc
      241 tttcatagta tgtgatgatg cagatattga aaaagcatct acaggtgctg tgaaaggtag
      301 atttattaat tgtggacaaa gctgcatagc atcgaaaaga tttattgtta ctaaaaaagt
      361 agcaagcgaa tttattgaaa agtttgtaca aaagactgaa aaactcaaag taggcgaccc
      421 cctatcagac gacacggata ttggacctct tgttaatgct aaaagtcttg agaatatgca
      481 aggtattgta aatagaactg tcaaggaggg agctgaactt cttacaggag gaggggaaag
      541 aataaaaaac aagggttact tctttgcacc aaccatcctt aagaatgtat tacctcatat
      601 ggaaatagca caggaagaag tatttggtcc tgttgctcca ataatcacag ttgaggatga
      661 aaaagaagct attagaattg caaatgattc taaatttggt cttggtgcaa gtatatggac
      721 tcagaattta gagaaagcag aaagattatc gtcaatggtt caatcaggaa tagttactgt
      781 gaataatgta gtagtttcag atccccgtgt cccatttgga ggagtaaaga atagcggatt
      841 tggtagagag ctatctagat ttggtatgct tgaatttgta aacataaagt cagtaaggtt
      901 ctatgaccaa ttaatttacg aacatcacgt agaataaagt tatataacct cccatgagag
      961 cgcacttatc aaaaactaac aatattgata ataccaaata tgtcagatac tattgagaac
     1021 gtccttatac ttcaaggcgg aggttcttta ggtgcatttg gctgcggagt cttcaaggcc
     1081 cttgcgaaca gcaatataaa actggatata attgcaggta cctcgattgg agggctaaat
     1141 gcttctataa tagcaggcag cagaaaagaa gaagaccatc ctgaaaaggc cctagagcaa
     1201 ttttggttag aactagcaga aggaagcagc agtatcatca agagtaatac aaatttgaat
     1261 tcaccattta tagatggatt aaaaacaatt ttagaattaa agaaagactt tgaatcattc
     1321 ttagctggta gatatccgat gtcaagaatt actagtagta gtactgacac taccgttact
     1381 tctcctatag cagctcattc agcaataacg catatttcac aaattaaatc aatacagtca
     1441 ttttatgatg cggcaatcca tgggaataac aaagttttta tgcccagatg gaaacctgaa
     1501 tatgctctta ctgatccaca gtattttaca ccgttagaat ggacctactt atatgaccat
     1561 tctccgttaa taaacacgct tgaaaaatac atcgattata atagattaca accgaatggt
     1621 aggcctaatg caaggttgat agtaactgca gttaatgtat tgacttcaga gccattaatt
     1681 tttgatagtt caaaacagca aataacttca aagcacatac tagcaacgac cggctatcca
     1741 agatattact ttagatgggt ggaagtggaa aaaggaatat atgcttggga tgggagcttg
     1801 cttagcaata ctccattaag agaagtaata gatgcttcac cagctaaaga caaacgagtt
     1861 tttcttgtag aaaattaccc taggtattct gagaggcttc cggataactt gttagaggta
     1921 gagcatagga caagagatat aatgttttgc gataaaactc tacacaataa acaaatggct
     1981 aaagctataa cctattatct tgaattcatt aatgaacttt atcatgttat tgaagatcgt
     2041 ttcgatttag aaaacgtaca ggacaaagag aaatttgaaa agattaaaac aaaatacaag
     2101 aaaatagcag aggatcatgg cgcacagata aaaagtctac attatatatc cagagatgag
     2161 ccatttccag atttatatga aaatgctgac ttttcaatag atacgataaa agcttctatt
     2221 agagatggag agttaaaaac taagcaaata ctaaatgacc attatcgcca tcagagaaat
     2281 gttgtgtaaa tagcaaaaga tatacaaaaa agattgttca tacctttatt gccttacttt
     2341 gggtaatttt aagtctgagc ataacatcaa ttgttcactc tctatcattt atttcccaaa
     2401 ttctactttt ttacctctca gcatcaccac ttttatgacg cgtatatata ttttttaaaa
     2461 tattatggac gatttctgta taaagtcaat cctgtccttt tggcatacgc acatcatttg
     2521 ccaataagca taaaatctcg aggttcaagg ccaaatacaa atcatttgga aatatgttag
     2581 atagaatggg taaaggcata agagctaaca atactagtaa tgacacatgc cgtactacta
     2641 ctaatccact gcatatatgg gccaacatcg tcttccatgt ttaccataaa aaagatag
//
LOCUS       DASQSJ010000043         2145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_400308, whole genome shotgun sequence.
ACCESSION   DASQSJ010000043 DASQSJ010000000
VERSION     DASQSJ010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400308"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..504)
                     /locus_tag="VE223_00915"
     CDS             complement(<1..504)
                     /locus_tag="VE223_00915"
                     /inference="COORDINATES: protein motif:HMM:NF017355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system HicB family antitoxin"
                     /protein_id="HZC20182.1"
                     /translation="MHKGSPQEQDAKVSKNETLTFRIDHDNVKKLRAEAESQGISLNS
                     LINQILKGFLEWHIFEPKVGMIPLSKPVVAELFTKMSEEQIIDIARRVGRNEMQNAAM
                     FMKGGKMDLNSFLSWFENRMKNSSIQVSHTFDNSNRTHMYIIKHDICENWSLYFKEIL
                     LYIFNEIY"
     gene            complement(669..1457)
                     /locus_tag="VE223_00920"
     CDS             complement(669..1457)
                     /locus_tag="VE223_00920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20183.1"
                     /translation="MTEPLPVDLLRDEIIDKPVHTSDGFLIGNIHTIDTHSVAVKRNT
                     VTTIYYHIPMHKIKEWDGHALWLNIDDKESKGHILPTDSKNIAAGSMTFDLEESIANN
                     IRSKAESEGVSLNTYVNQIIKRFLEWDRFESKAGMIPMSKPVLTEIFNNRTKEEVIDI
                     AKRVGKKAVQNTAVFIEGEEEVLDLNSFLSWLEAEMDTYSLEIRHAVKDNGNHHTYIL
                     RHDAGENYSLYYKTVLELIFEELLQKRINFLTSNNTTLAFEFHK"
     gene            complement(1707..1925)
                     /locus_tag="VE223_00925"
     CDS             complement(1707..1925)
                     /locus_tag="VE223_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20184.1"
                     /translation="MTESNCQLGAIPLLLSTEDILSPDDVFPREDIFGSCLIEAGVLA
                     VIGCSFPKALKALGSPISYYQFIILILT"
BASE COUNT          621 a          414 c          361 g          749 t
ORIGIN      
        1 gtaaatctca ttgaaaatat acaataatat ttccttaaag tataaagacc agttttcaca
       61 gatatcatgt tttatgatgt acatgtgagt tctattgcta ttatcgaatg tatggcttac
      121 ctgaatggat gaatttttca tcctattttc aaaccaagac aaaaatgaat tcaaatccat
      181 tttaccacct ttcataaaca tcgcggcgtt ttgcatttca ttcctaccaa cacgtcttgc
      241 tatgtcaatt atctgttctt cgctcatttt tgtaaaaagc tctgctacta ctggcttgga
      301 aagggggatc attccgactt tgggttcaaa gatatgccat tccaagaaac cttttaggat
      361 ctgattgata agggagttga ggctgattcc ctgactctct gcttctgcac gtaacttttt
      421 aacattatcg tgatctatgc ggaaggttag agtctcattc ttgctgactt tcgcatcttg
      481 ctcttgaggg ctacctttat gcatagtaat aactattcac ctaactctct gcatttagta
      541 tcctattaga aaatctttct taataaatcc atcgttattt tacgtaggta gtctcgctcc
      601 ccttcgatag atgtcagaat tttattactt gtcaaagagt tggaacattt tttgtcagag
      661 atctgatctc atttatgaaa ttcaaatgct aatgttgtat tatttgatgt taaaaagtta
      721 atacgctttt gtaacagctc ttcaaagata agttctagca ctgtcttgta gtacaacgaa
      781 tagttttctc ctgcgtcatg tctgagaatg tacgtgtgat gattaccatt atctttgaca
      841 gcatgacgaa tctcaagaga gtaggtgtcc atctccgctt cgagccacga caaaaaggaa
      901 ttcaggtcca gcacctcttc ttctccttct ataaatactg ctgtgttttg tactgctttc
      961 ttaccaactc gttttgctat atcaattacc tcctctttag ttctgttatt gaaaatttct
     1021 gtcagtactg gtttagacat tggaatcatt ccagctttag attcgaacct atcccattct
     1081 aagaacctct ttatgatttg attaacataa gtattcaggc taactccctc actctctgct
     1141 ttggaacgta tattatttgc aatgctttct tctaaatcaa acgtcataga acctgctgca
     1201 atatttttac tgtcggttgg tagaatatgt cctttggatt ctttatcatc tatatttaac
     1261 cataatgcat gaccgtccca ttctttaatc ttatgcatag ggatatgata gtatatcgta
     1321 gttacggtat ttctttttac agctactgaa tgtgtatcta tggtatgaat attaccaata
     1381 agaaaaccat cgcttgtatg aacaggttta tcgataatct catctcttaa caaatctact
     1441 ggtaatggtt cagtcatagg aaagatggtc ctatctcctc tttggacttg aaaataaaaa
     1501 tagtactagt caggaaagac atttttacca tattccgaac gttcgtcagt cgtcatcagg
     1561 ctgcctcctt cttctgcgtt agaagcatgt atctttaaga tattggtaat gatcataata
     1621 tgatcgctaa catacaacaa tgaaataaaa gttctttgca agcatgtgca gtcatttgca
     1681 tataagtctg ttcatgaata acggtatcat gtcaatatta ggatgatgaa ctggtaataa
     1741 gatattggcg atcctaatgc ttttaaggcc tttggaaagg agcatcctat tacagctaat
     1801 acaccagcct ctataagaca actgccaaat atgtcctccc gtggaaatac atcatctggc
     1861 gataatatgt cttctgttga aagcagcagc ggtatcgctc ccagctggca attcgattca
     1921 gtcatatgtt gtatcgatcc tgatcaaaat acgttgcaca cttattttta ttctgaatgc
     1981 attaagaatg cttacttcgg ctgcaaatgg ttgcaaacgc aagttaacat tgttagcaag
     2041 tgattattta tataacttat tgcagacctg cctcttggag ataaaaatgt cagaaccagt
     2101 tataacagat tgagatattg tcgtccataa aaatgtaaga gccaa
//
LOCUS       DASQSJ010000044         3643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_442541, whole genome shotgun sequence.
ACCESSION   DASQSJ010000044 DASQSJ010000000
VERSION     DASQSJ010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3643
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442541"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..830
                     /locus_tag="VE223_00930"
     CDS             <1..830
                     /locus_tag="VE223_00930"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20185.1"
                     /translation="VSIVTVPANFDVSVQKGFDVQLPVVVNNLDVDFTNDIRRAIPLA
                     ITSFYANAFPNQVVIKPREIDTYSHDTGYIQYLVVSLMVVSIMLGGLLQAGANAAREY
                     ENGTIKELILSPARLWAIQLGKILGALVLNSFSVLVVIIVIVLLIGVWPVHWDELLGF
                     TLLLMIIFVALGTLVGTLVRRRQSVIPLSIGVTIPIFFLSGAFGPAIWGDPSIAFVTQ
                     FQPVYYGIAIFQHAFHDFTTTRTGPLYDKIILIGFAIAAVLGSVIALRSTKGESSLR"
     gene            830..1996
                     /locus_tag="VE223_00935"
     CDS             830..1996
                     /locus_tag="VE223_00935"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20186.1"
                     /translation="MMVSVSVAKFWLAILAIVRKDIGIWLRQPTAITATILPAIAFMI
                     ILYFGAQAVGRNPVAIVVQDNGPHAQELVSILNSSDAFKVSLITTKQDEAEQALKHIQ
                     VAAVITIPSNFDAAFNAHKSDPVTIHINNLNLDFTNDLRRSLPAAISEFYSRTQGDDI
                     NNNDNNSNINSPIKIHVKETDLRKQDVDLLRFEIIPNMILLLTTAGIVNAGLATAREW
                     EDSTIKELLLAPISRSSLIAGKLIGGWLTTLFVATVILVIGAVTGYLRPEGLLYWLTT
                     IIIIMLIALSSVGIGVAIGSAARRFQRVTAAGIPLSIDLFFLSGGITVAAFLPSWLQV
                     VAHFIPTFYGTHALQTSIFYSSTEGLAQDILVLVGTAFATIALGVFSLRRSTLV"
     gene            complement(3074..>3643)
                     /locus_tag="VE223_00940"
     CDS             complement(3074..>3643)
                     /locus_tag="VE223_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20187.1"
                     /translation="SSIEVEALTKVNHSCQPETLSSIKPQQQNTHATQNVIMQTQADL
                     ISCLVQVVNIRIATQHAIEGLGGGQIAGPNVYLRAQELYYPKLMFEIMADKKLPDNRS
                     WLKEEEYIDLVSIGGNNKRHNNNTKEQHEHWAYRLIKQEGAIKTLKINSNELTNFLNI
                     AKSTTGAFQVQVDDNKSKNYFVISIAFKH"
BASE COUNT         1043 a          692 c          690 g         1218 t
ORIGIN      
        1 ttgtatcaat tgttactgtt cctgctaact ttgatgtgtc agtacagaag ggatttgatg
       61 tacagcttcc tgttgttgtc aataaccttg atgtagattt tacaaatgat attcgtagag
      121 caataccgtt agcaataacc tcattttatg caaatgcttt cccaaatcaa gtagtaataa
      181 agcctcgcga aatagacact tattctcatg acactggcta tatccagtat ctggttgtaa
      241 gcttgatggt tgtaagtatt atgcttggcg gattgctcca agctggtgct aatgcagcca
      301 gagaatatga aaatgggaca atcaaagagc taatcttgtc gcctgcaaga ctatgggcta
      361 ttcaacttgg caagatttta ggtgcactag tacttaattc attttctgtt ttagttgtga
      421 taatcgtgat tgtacttttg attggcgttt ggccagtaca ttgggatgaa ctgcttggat
      481 ttacgctcct acttatgata atatttgtgg cattagggac gcttgtcggc acgcttgtac
      541 gtcgcaggca atcagttata cccctgagta ttggtgtgac tataccaatc ttctttctaa
      601 gtggcgcttt tggtccagct atttggggag acccatctat agcatttgta actcaatttc
      661 agccagtata ctatggtatt gcaatatttc aacatgcttt tcatgacttt acaactaccc
      721 gaacaggacc attatacgat aaaatcatat taattggctt tgctattgct gcagtacttg
      781 gtagcgtcat tgctcttcgc agtactaaag gagaatcatc tctgcgttaa tgatggtcag
      841 tgtgtcagta gcaaaattct ggcttgcaat tctagccatt gtacgtaagg acattggtat
      901 atggcttcgg caaccaacag ctattaccgc cactattctt cctgcaattg catttatgat
      961 cattctttac tttggagctc aggcagtagg acgtaaccct gtagcgatag tggtacagga
     1021 taatggccct catgctcaag aacttgtaag tatacttaat agctctgatg cattcaaggt
     1081 ttcacttata actacaaaac aagatgaagc agagcaagca ctaaaacata tacaagtagc
     1141 agcagtcata actatccctt ctaactttga tgctgcattt aatgcacaca aatccgatcc
     1201 agtcactatc cacataaaca acctaaatct agactttaca aatgaccttc gtcgatctct
     1261 tcctgctgcc attagtgaat tctattctag aactcagggc gatgatatca acaataatga
     1321 caacaacagt aatatcaaca gccctatcaa aatccatgtc aaagagacag acttaagaaa
     1381 gcaagatgtt gacctcctta ggtttgagat tataccaaac atgatactct tgttaactac
     1441 ggctggcatt gtaaatgcag ggttagctac cgctagagaa tgggaagact caacaataaa
     1501 agaactttta ctagcaccaa tttctagaag cagtcttatt gcgggtaagc taataggagg
     1561 atggcttact actctttttg tagctactgt gatattggta ataggtgcag taacaggcta
     1621 tctaagacca gagggcttgc tttactggct tactactata atcataataa tgttgattgc
     1681 tctttctagt gttggcatag gtgtagctat aggatcagca gcacgtcgct tccagcgagt
     1741 cacagcagct ggtattccac tttcaataga tctctttttt ctaagcggag gtattactgt
     1801 tgctgcattt cttccatcat ggcttcaagt agttgctcat tttattccta ccttctatgg
     1861 aacccatgca ttgcagactt caatctttta tagttccact gaaggtttgg cgcaggacat
     1921 attagtgctg gttggaactg catttgccac tattgctctt ggcgtctttt cattaagaag
     1981 gagcacattg gtataactat aacgtgagat aaaagaagga ataaatgaat ccgtctgctt
     2041 acataaaaca ggtatagata ctcttgatat tgtgacatgg tccacttgag caagttaaac
     2101 acatcaagta aaaagtgatg cgatgacgtg gcaatgacaa tgactttaaa gtagatctca
     2161 aagatgctaa ttactgagga ataagaggat catctatcct catattttga gagatcttaa
     2221 taagtaaaga caattaacct ttgcttttct tacccctttt tattgatgta tctcacttta
     2281 tacccgaagg ttttcaaata ttgagatata tgagtgggca gtcgactagc tattagaata
     2341 cgttgccagg gcaatttcgt catcaaaggt ttttgctgat agatctttca attctatagt
     2401 caaacaatat gctttatcaa ctatcaaaat tgtgatttta gattgctgag ccttgcttag
     2461 atgtgaatcc taatgctttg tacctctttt tctcttaaat ttgttgtgca actttactta
     2521 ttatatcatc aatatatgca aacataccat cgtgtgagga ttggtagaat ggcaaatcga
     2581 taaaagatat caactttact gtggataatt tttgtaatcc tattagtcag atgtgtgtta
     2641 cagaaactga aaattattac tcgaacctat tgttggaggt acggcaggat acaataatgg
     2701 aggcgcttag aggctagcgc ctttctgcac tgatattaga agatacataa tgaagctgta
     2761 tttctaaata ggagatggtc ttttgcagaa gcggctcgta ccaatgcctt tcttatcttc
     2821 ccatatacaa agcacattgt tatctttggt gtattctgcg ctatattata gcatatgaag
     2881 atggactgca acttagcttt tgctttgcct taagccctaa ttgagaagtg cccctcattt
     2941 tgcaaaagtg caagactcaa gtgccaaggc tcaataagca tatcagttac aatgcatctg
     3001 atgatatatt atcctgccat tgcggtctga tgcttatcac ataggtttgt tattctccag
     3061 cattaataaa acatcaatgc ttaaatgcaa ttgagataac aaagtagttc ttacttttat
     3121 tatcatctac ttgaacctga aatgctccag tagttgactt tgcaatattt agaaaattcg
     3181 ttaattcatt actatttatt ttcaatgtct ttatagctcc ttcttgttta attagacggt
     3241 aggcccagtg ctcgtgctgt tctttagtgt tgttattatg tcttttgtta ttcccgccaa
     3301 tgctaaccag atctatatac tcctcttcct tgagccatga tctgttgtca ggcaattttt
     3361 tatctgccat aatttcgaac attagtttag gatagtataa ttcctgagct cttaaatata
     3421 cattaggccc cgctatctgt cctcctccta gtccttcaat tgcatgttga gttgcaatcc
     3481 ttatattgac aacttgtaca agacaggaaa ttaagtcagc ctgcgtttgc ataataacgt
     3541 tttgtgtagc atgtgtattt tgctgctgtg gctttattga ggatagagtt tcaggctgac
     3601 aactatggtt aacttttgtt aaagcttcta cttctataga act
//
LOCUS       DASQSJ010000045         3761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_163893, whole genome shotgun sequence.
ACCESSION   DASQSJ010000045 DASQSJ010000000
VERSION     DASQSJ010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3761
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163893"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(244..801)
                     /locus_tag="VE223_00945"
     CDS             complement(244..801)
                     /locus_tag="VE223_00945"
                     /inference="COORDINATES: protein motif:HMM:TIGR02087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HZC20188.1"
                     /translation="MSRGEDNRDPQPKSVRITNGRAWIFGDNINTDIIIPFRFKSRTN
                     DPYEMAKYAMYGHDPDFHKKISSGDVIVAGRNFGGGSSREQAPVALKYAGISAVVAES
                     FARIFYRNSFTIGLPALEVPGIKGKVNQGDDLSIDISKFTVQNLRSRETFQCQVVPKF
                     MRYMLMEGGLVEYYKKYKQFPWAQM"
     gene            complement(798..2186)
                     /locus_tag="VE223_00950"
     CDS             complement(798..2186)
                     /locus_tag="VE223_00950"
                     /inference="COORDINATES: protein motif:HMM:TIGR02086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HZC20189.1"
                     /translation="MRQQQKTQQDDSQIKCILDNKSLTFAEKLINIKNVERINKNVNT
                     LSMAGDIAIVNVDLAMAQDSTGPLAIRSLNELGIDKLYDPSKVLLVIDHTFPAADEKV
                     ANLHKLMRDFALKHNCMLVEGSISHQHILEYLASPGMMILGADSHTCQAGSIGSFATG
                     VGSTEIAAVWATGQLWLKVPETIKVKLSGNFDRGVFARDLILHYIGEVGEDGANYKSL
                     EWKYSDDHVKKQFSMDSRACISNASMECGAKISIFPVDEITKKYIEENPRTDQNNNNT
                     TNNSNIQGRIDVQAGNSAQYKEEVEIQLEKIEPQISGPDNVDKVHSVDELANLEIDQA
                     FIGSSTNGRIEDLEVAARILKGRKVHKNTRCVVTPASVKVYEEAIRRGYVEIYLESGA
                     VFTNATCGACVGTHLGALGEHEICISSSSRNFVGRMGALSSKVYLASPATVASSAIEG
                     RIADPRRYLKSP"
     gene            complement(2597..3448)
                     /locus_tag="VE223_00955"
     CDS             complement(2597..3448)
                     /locus_tag="VE223_00955"
                     /inference="COORDINATES: protein motif:HMM:NF042804.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6775 family putative metallopeptidase"
                     /protein_id="HZC20190.1"
                     /translation="MLKFKNIHIYCNQANNLDFDIIVSELQKYFPNIPIDVRNPLLYN
                     VDNVLAEHLVYTRISDIKRPLNEQPRAKVQGILDQNIAYEKNLRDLIHTSNGSIAGRQ
                     YNGLILYDGFMMQRLFETMLNENDANTRHVHIVFEDRLICTFSEEDCRYHARTIIGGS
                     PSIISTTGIIEAPAKPKEWYIKQMQVAAYGISSDGDQNDEIASSRIKKEKYLEYGDCR
                     INFAAVGYVLQALFFFITEGNPFCNDINCRLYNAHWQEEVIHSQIQSKRLCKKHAELL
                     YKFNAIC"
     gene            complement(3528..>3761)
                     /locus_tag="VE223_00960"
     CDS             complement(3528..>3761)
                     /locus_tag="VE223_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20191.1"
                     /translation="FDLLNDLYEANREGNWYWIIRQLRNYSLDNSLISKDAFELLANY
                     TKTNTKLIPYFEQSLNHLEKLIENIRIKEPLLQ"
BASE COUNT         1072 a          748 c          617 g         1324 t
ORIGIN      
        1 ttaattcgga tattgtttct tcatataact tgctagagca ggttgtctca agagaggagc
       61 caaaacacat tttccaaata agggacaagg tatagatgaa gtagtagtag gacaaaatgg
      121 tgtgtatatg tgtgcttgca ctataacaaa agaaaaaaat atactataca cctcccaaca
      181 ttttttgtta aaatcagttg ttgatcagaa tgtacgtggg tcctatctgt atgttgcaat
      241 aaattacatt tgtgcccatg gaaattgttt atacttcttg tagtattcca ccaatccacc
      301 ttccatcagc atatatcgca taaattttgg aactacttga cattgaaaag tctctctact
      361 tctaagattc tgtacagtaa attttgatat atctatgctg agatcatctc cttgattcac
      421 ttttcctttg attcctggta cctcaagtgc tggcaaacct atggtgaagg agtttctata
      481 gaatatgcgt gcaaagcttt cagctactac tgctgatatg ccagcatatt tcaatgctac
      541 aggggcctgt tctctactag aaccaccacc aaagtttcgg cccgctacaa tcacatctcc
      601 actggatatc ttcttatgaa aatccggatc atgtccatac attgcatatt ttgccatttc
      661 atatggatca tttgtcctac ttttgaatct aaaaggtatt attatgtctg tattgatgtt
      721 atctccaaat atccatgctc ttccgttggt aatcctaacc gactttggct gcggatcgcg
      781 gttgtcttcc cctcggctca tggtgatttg aggtacctcc ttggatcagc tattctacct
      841 tctattgcag atgatgctac ggttgcaggt gatgctaaat atacttttga ggaaagtgca
      901 cccattcttc caacaaaatt tcttgaagag gaagatatac atatttcatg ttcacctaaa
      961 gcacctagat gtgttccaac gcaggctcca caagtagcgt tggtaaacac ggcccctgat
     1021 tcaagataga tttcaacata gccgcgtcta atagcctctt catatacttt cacagatgct
     1081 ggagtgacaa cacatcgagt gtttttatgg acttttctgc cttttaatat gcgagcggct
     1141 acttcaagat cttctattct tccattagta gatgaaccta tgaaggcctg atcaatttcc
     1201 aaatttgcta gctcatcaac tgaatgtacc ttatcaacat tgtctgggcc actaatctga
     1261 ggttctattt tctctaattg tatttcgact tcttccttat attgtgcaga atttcctgct
     1321 tgaacgtcaa ttcttccttg tatattgctg ttgttggtag tgttgttatt gttctgatca
     1381 gttctagggt tttcctctat gtattttttt gtaatctcat cgactggaaa tatagagatc
     1441 ttagcaccac attccattga tgcattgcta atgcaagctc tagaatccat gctgaattgt
     1501 ttcttgacat gatcgtctga atacttccat tctagggact tgtagtttgc tccatcctcg
     1561 cctacttctc caatataatg taaaattaga tctcgggcaa atactcctct atcgaaatta
     1621 cctgacagct taaccttgat tgtttcagga acttttaacc acaattggcc tgtagcccac
     1681 actgcagcaa tttctgtact tccaacccca gtcgcaaagg atcctataga tcctgcctgg
     1741 catgtatgcg agtcagctcc taatatcatc attccaggag aggcaagata ttcaagaata
     1801 tgctgatgag aaatagaacc ttcaactagc atacagttat gttttaaagc aaaatccctc
     1861 atcaacttat gcaggtttgc cactttttca tctgcagccg gaaacgtatg gtcaatgacc
     1921 aacaagacct ttgagggatc gtataatttg tctataccca attcattaag cgagcgtatt
     1981 gccaaaggac cagtactatc ttgtgccata gcaagatcca cattaacaat agcaatatcg
     2041 ccggccatgc ttagcgtatt gacattttta tttattcttt ctacgttctt tatgtttatc
     2101 aatttctcag cgaaagtaag agatttgtta tccagaatac atttgatctg agaatcatcc
     2161 tgctgtgtct tctgctgctg ccgcatctac attccactta taaaaacaag attgatttaa
     2221 gtataatgca agtcaagcta acttttagca tcgttttttc taatattcac gtgacatgta
     2281 cttcttatct atattaaata gacagtgaat gaattttgta atctatttaa gcttgaaaag
     2341 ttgtctttat gataccacaa attctctctg ggcaattgga cacggtattc catcattata
     2401 aatatgcaac aattttgtgc tcatctgata tctagagggc aacaagttaa cattgctaca
     2461 ctgcatcaag tccttcaatg atgtatgtag cttgagtctt tttatattgt cttcatttat
     2521 gccttatgaa aaggttgatt ataaattact atttgttacc tcaggtaaat ataattaaaa
     2581 atcaatccaa attcaactag catatggcat tgaacttgta cagcaattca gcgtgctttt
     2641 tacatagcct cttgctttgt atttgtgaat gtattacttc ttcttgccag tgtgcattat
     2701 aaagtctgca attaatatca ttacagaaag gatttccttc agttataaag aaaaacaacg
     2761 cctgaagaac atatccaacc gctgcaaagt ttattctaca atcaccgtac tcaagatact
     2821 tttctttctt gatcctggat gatgctatct catcattttg gtcgccatca ctacttatgc
     2881 cataagccgc aacctgcatt tgctttatgt accattcttt tggtttggca ggtgcttcaa
     2941 taatacctgt cgtagaaata attgagggac tccctcctat gatggttctt gcatggtagc
     3001 ggcagtcttc ttcgctaaaa gtacagatta atctatcttc aaagactatg tgcacatgac
     3061 gagtattcgc gtcattttca ttgagcattg tttcaaataa tctttgcatc ataaacccgt
     3121 cgtataatat caatccatta tactgccttc cagcgatact accattacta gtatgaatta
     3181 gatctcttaa attcttctca taagcaatat tttgatctaa tattccttga acttttgctc
     3241 ttggttgttc gttaagcggt ctcttgatgt cagatatcct agtatatact aaatgctctg
     3301 caagtacatt atctacgtta tacaaaagag gatttcttac atctatcgga atgttcggaa
     3361 aatatttttg tagttctgac actataatgt cgaagtctaa attgtttgcc tgattgcagt
     3421 aaatgtgaat attcttaaat tttaacattt gcctatttat gattagctaa tagtatattt
     3481 gatgtcttta tattagcatt aagtcttaca gagtgattgg tagtatttta ttgtaacaaa
     3541 ggttctttta ttctaatgtt ttcaattaat ttctcaagat gatttagaga ttgctcaaaa
     3601 tatggaatta atttcgtatt ggttttcgtg taatttgcaa gcaattcaaa agcgtctttt
     3661 gaaatcaagg aattatctaa tgaataattt ctcagttgcc ttataatcca ataccaatta
     3721 ccctctcggt ttgcctcata caaatcattt aatagatcaa a
//
LOCUS       DASQSJ010000046         3487 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_482767, whole genome shotgun sequence.
ACCESSION   DASQSJ010000046 DASQSJ010000000
VERSION     DASQSJ010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_482767"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(399..1547)
                     /gene="dnaJ"
                     /locus_tag="VE223_00965"
     CDS             complement(399..1547)
                     /gene="dnaJ"
                     /locus_tag="VE223_00965"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HZC20192.1"
                     /translation="MSKRDYYDVLTVSRNASKEEIKNAYRKLALQYHPDRNKSPGSEE
                     KFKEISEAYAVLSDDEKRKRYDTYGHVGAEEVFRGSEANFDEIFRDMGFSGVKDIFEQ
                     IFGGRGAGGFGGMSGSDPFGFGFSFGRGGGRRKGQDIIYDIELSLEDVLKGRKDKLDL
                     PKLERCNNCGGTGAAPGTKPKKCSVCNGQGQTRHIYNQNRFSTFVSLEPCQTCQGQGE
                     IIDKPCNICNGSGRVRRRKQIDLEIPAGVEDGMTLQLRGEGEPSENGVPGDLLIRIHV
                     RQHPLFERLEDGHLLYNLNLKFTDLALGTEVRVPTLDGHEKLKIPQGTQPNTILKIKG
                     KGLPRYGGYGKGDLLTRIDIKVPTKLNDRQKSLLKQLEIEFQNREEGI"
     gene            complement(1602..>3487)
                     /gene="dnaK"
                     /locus_tag="VE223_00970"
     CDS             complement(1602..>3487)
                     /gene="dnaK"
                     /locus_tag="VE223_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HZC20193.1"
                     /translation="IIGIDLGTSNSAAAAMVGGKPTIIQAAEGTSVGGKAFPSVVAFT
                     REGQLIVGEPARRQMISNAEGTVLAAKRKMGTDFKFTVFGKQYTPQQISAFILQKIKR
                     DAEAFLGETVDKAVITVPAYFNDNQRQATKDAGEIAGLQVVRIINEPTAASLAYGLDK
                     VQKDLKIMVFDLGGGTLDVTIMEMGGGVFQVKSTSGDTQLGGTDMDNALVDYIIQEFK
                     QQSGLDVRNDKAAMMRIREAAEKAKIELSNIVTTEINLPFLAYDAATGPKNLVLSLTR
                     AKLEDLLRPIIERCRSPMMQSIQDAKIAPNEVDKIILIGGPTRMPIVRQFVANVMGKE
                     PERGVDPMEAVAMGAAIQGAIISGDVSTDILLVDVTPLTLGVEVLGGLKEPLIERNTT
                     IPSKKSKVFTTAADYQTAVTIHVVQGERPMASDCVSLGMFNLSGIPPAPRGIPQIEVT
                     FDIDANGILNVTAKDMATSKEAKITITANTKLSKEEIDKLKKESERFADADKKKKEEA
                     EIKNEADNLTYAAEKLVKQDLKDKIKQEQVDRVNKSAQDLKDAIASNNVDNIRSKMQE
                     LKNILGEVSAEAYRAAGAPSASTSASGGATADGTGPAGTGSSVGGFDSGTNTSDTTPP
                     PPP"
BASE COUNT          922 a          789 c          583 g         1193 t
ORIGIN      
        1 atccttatat gccttcgaaa cccttcttgc ctcaattgca tgcacatctg tattgtgtta
       61 taaataagaa tatatattat gcattaaagg gtaggaaaac gtaagttgta ataaagagta
      121 gtcaaaaaga agtatgttag acaaagatcg gaaaaactta gcattattca tttctgtaga
      181 tagagccatt tgataatgca atagcattac aatttattct tttcaatcta gacctattcg
      241 gtgtgaatag gattaacacg ctacctgata ataaatttta cgaattacgc gtattctaaa
      301 aaatttacga tacaaccaag aaactacata acacattttt attaatccag gatgggatct
      361 tcattttgag gattctcgtc actataaatg tatatctatt atatgccctc ttctctattt
      421 tgaaattcta tttctaactg cttaagtaat gatttttgtc tgtcatttaa tttggttgga
      481 accttaatat cgattctagt aagtaggtca cccttaccat atccaccata gcgaggcagt
      541 cctttacctt taatttttaa aatagtattt ggttgtgtgc cctgtggaat ttttaatttt
      601 tcatggccgt caagcgtagg aactcgaact tctgttccaa gtgcaagatc agtaaattta
      661 agattaagat tgtaaagcaa atgaccatct tctaatctct caaatagtgg atgttgtcta
      721 acatggattc ttattaataa atctccagga actccatttt cggatggctc tccctcacca
      781 cgcaattgca atgtcattcc atcctctact cctgcaggaa tttctagatc tatttgcttt
      841 cttcttctga ctctgcctga accattgcag atattgcagg gtttatcaat aatttcgcct
      901 tgaccttggc acgtttgaca tggctctagt gatacaaaag tggaaaatct attttgatta
      961 tatatatgtc tagtttgccc ttggccgtta caaacgctac atttctttgg cttagttcca
     1021 ggtgcagcac cggttccacc acaattgtta cacctctcaa gttttggtag atctagttta
     1081 tcctttcttc ctttaaggac atcttctaag gaaagttcaa tgtcataaat aatatcctgt
     1141 ccttttcttc tacctccacc tctaccaaag ctaaaaccaa aaccaaaggg atcactaccg
     1201 ctcataccgc cgaaaccgcc agcaccacgg cctccaaata tctgctcaaa aatatcctta
     1261 acaccactga atcccatatc tctgaagatt tcatcgaaat ttgcttccga gcctctgaat
     1321 acctcttctg cgccaacgtg gccatatgta tcataccttt ttcttttttc atcgtcagac
     1381 aaaacagcgt atgcttctga aatttctttg aacttttctt cagatccggg tgacttattt
     1441 cggtcagggt gatactgtaa tgctaacttt ctgtatgcat tcttgatttc ttccttactt
     1501 gcattcctgc taaccgtaag aacatcataa tagtccctct tgctcatatt ttcatactcc
     1561 tatgattctt tattatcaat agtgtaagat attgttcaat attatggagg cggtggtggc
     1621 gttgtgtctg atgtattagt acctgagtca aatcctccaa cactagaccc tgtaccggcg
     1681 ggaccagtgc catctgctgt tgctcctccc gaggcactag tagatgcaga gggagctcct
     1741 gcagctctat aagcttccgc gctaacctca ccaagaatat ttttcaattc ttgcatcttt
     1801 gacctaatat tgtctacatt gttgctagca attgcatcct tcaaatcttg agcagatttg
     1861 ttgactctgt caacttgttc ttgtttgatt ttatctttca gatcttgctt tactagtttt
     1921 tctgctgcat aggtcaaatt atcagcttca tttttgattt cagcctcctc tttcttcttt
     1981 ttatcggcat cggcaaatct ttctgactct ttctttagtt tgtcgatctc ttcttttgac
     2041 agtttagtgt ttgcagttat agtaattttt gcctcttttg atgtagccat gtctttggct
     2101 gtaacgttca agattccatt cgcatctata tcaaaagtaa cttcgatctg gggtatacct
     2161 cttggtgctg gagggattcc agataggtta aacatcccaa gagatacaca atcagatgcc
     2221 ataggtcttt cgccttgcac tacatgaatc gtaacagcag tctggtaatc agctgcagta
     2281 gtaaacacct tgctcttttt tgaaggaatt gtggtgttac gctctataag aggttctttt
     2341 aaaccaccaa gaacttctac acctagagta agtggtgtga catctaccaa aagtatgtct
     2401 gtcgacacat cgccggaaat aatagctccc tgtatagctg ctcccattgc aacagcttcc
     2461 attggatcca caccgcgttc tggctcctta cccataacgt ttgcaacgaa ttgtctaaca
     2521 atcggcattc ttgtaggccc accaatcaat atgattttat caacttcatt tggtgctatt
     2581 ttcgcatcct gaatagactg catcataggt gatctacatc tttcgattat tggtctcagc
     2641 agatcttcta gttttgctct cgttaaagac aatacaagat tctttggacc tgtggcagca
     2701 tcgtatgcaa gaaacggcag attaatttca gtagtaacaa tatttgataa ttcaattttc
     2761 gctttctctg ctgcctccct tatcctcatc attgctgctt tgtcatttct aacatctaat
     2821 ccagattgct gtttgaattc ttggataata taatcaacca aagcattatc catgtccgtt
     2881 cctccaagct gagtatcacc agaagtactt ttaacctgga aaactcctcc tcccatttcc
     2941 attattgtaa catccagtgt tccgcccccc aagtcaaaga ccataatttt aagatctttc
     3001 tgaaccttgt ccaatccata tgccaatgag gcagctgtag gctcattgat gatccttacg
     3061 acctgtagtc ctgcaatttc accagcatcc tttgttgcct gcctttggtt atcgttaaag
     3121 taagcaggta cggtgattac tgctttatcc acagtttccc ctagaaaagc ttcagcatct
     3181 ctctttatct tttgtaagat gaatgcagat atctgttgtg gagtgtactg cttaccaaat
     3241 acagtgaatt taaaatcagt tcccattttg cgttttgctg caaggacagt accttcggca
     3301 tttgatatca tctgacgtct tgctggctca cctacaataa gctgaccttc acgagtaaaa
     3361 gcaacaaccg agggaaacgc ctttcctcca acagaagtac cttccgctgc ctgtatgatt
     3421 gtaggcttac caccgaccat cgctgctgca gcagagttgc ttgttccaag gtcaattcct
     3481 ataattt
//
LOCUS       DASQSJ010000047         6796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_400442, whole genome shotgun sequence.
ACCESSION   DASQSJ010000047 DASQSJ010000000
VERSION     DASQSJ010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6796
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_400442"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..303)
                     /locus_tag="VE223_00975"
     CDS             complement(73..303)
                     /locus_tag="VE223_00975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20194.1"
                     /translation="MSIRTKCFNPCNLLKANASKITTTMDIITPTANRLYINDYLYII
                     TMKITRERLFLFALIAATIIAVIVAPFVVGQM"
     gene            complement(374..751)
                     /locus_tag="VE223_00980"
     CDS             complement(374..751)
                     /locus_tag="VE223_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20195.1"
                     /translation="MDKKIIILVGIGGIITFLVYLGLQNSLKVPALFSAPISSKEAIT
                     AVAQKENLARYNLSDFSTKYVYIKGNGAIFESDDNSNSIGKYLGKGEPTITTGNYFAW
                     EVIKDNHIYFVDSSTGEIISEKN"
     gene            1691..2740
                     /locus_tag="VE223_00985"
     CDS             1691..2740
                     /locus_tag="VE223_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HZC20196.1"
                     /translation="MKAAVFREYNKDPAKVVKIEDIDMPKLKPTEVMVKPEAAAYNYN
                     DLWAIWGEPIKVPSPHISGSDVAGTVVEVGEDVTKFKVGERVVSHSNISCRVCEACTS
                     GREYDCIDRLVWGFQTGPLWGGFCQYTHLPEVNVAKIPENVSFDDAAAISMVGMTAWH
                     MLVGRAKIKPGQMVLVMGGTSGVGMAGIQIAKLYNCTVIATAGNKEKMDKCSEIGADY
                     VVNHREADWYKKVREITHKQGVDVIFEHIGKAVFPQEVGLLKMAGTLVSTGATTGYDS
                     TIDLRYLFFKGINLLGSTQGTKAELEEVIYWTGKGKIKPLVHTILPFSDMVKGHVMMA
                     KAEQIGKIVTTPQRL"
     gene            2768..3640
                     /locus_tag="VE223_00990"
     CDS             2768..3640
                     /locus_tag="VE223_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HZC20197.1"
                     /translation="MMLRSLIFVPSNSKRFIEKAKALNADIICFDLEDSVPLNEKDIA
                     RQMITDALTKRKEYKSNIYIRINSLESGLAFSDLDAIIHEGIDGIVIPKVNDEEEVNK
                     IEQLISNLENQRGVCEDSIKLMPSIETAKGVVNAYPIAKSVQRINALVFGVFDFLYDM
                     HLDYVEEDGIEYGYARSKIPVDARAAGLAALDGIWQKVDDIDGFKKDANVAKRLGYSG
                     KTIIHPNQIEPIHKIFVPSKNEIEWAKKVLEVLRDSIEMGHGKGAVKLEGKMIDAVHY
                     KQAKAILNALYEPK"
     gene            complement(3766..4029)
                     /locus_tag="VE223_00995"
     CDS             complement(3766..4029)
                     /locus_tag="VE223_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20198.1"
                     /translation="METEIPISDYVKYYVYEGEDADILVREVKDGVFKVLIREYYGDE
                     DEFDEDEYFIRKNTLDELFEEYGILKHPSGTERILEETGEIVR"
     gene            4151..4810
                     /gene="ribE"
                     /locus_tag="VE223_01000"
     CDS             4151..4810
                     /gene="ribE"
                     /locus_tag="VE223_01000"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004746 - riboflavin synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HZC20199.1"
                     /translation="MFTGIIEGVGTVKSISKVKSKNKVPGADIQLSIYLGRLKKGLKI
                     GNSVSIDGVCLTITRLHKGSADFQLVDETVKRSCLGLIKPGDKVNIERSLRLGDRLEG
                     HIVLGHVDTTGIIEQIINSSGETKMWIKINDQEIFHSIVPKGPLAVDGISLTVVDVKD
                     QKISVALIPHTLSNTTLGLKSKGDRVNIEIDVIGRYVTYQKCSLNSNFSKLYNEFLQG
                     K"
     gene            4815..5498
                     /gene="ribB"
                     /locus_tag="VE223_01005"
     CDS             4815..5498
                     /gene="ribB"
                     /locus_tag="VE223_01005"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HZC20200.1"
                     /translation="MSAIEEAISALRSGKFVLIHDEKSREDEIDMVIAAERIRPWHVA
                     RMRNDAGGLLCVAITNEITVKLGLVYMQEIMQSLSNVNPIFAKLSTGKSPYGDNPSFS
                     ISVNHRDTYTGITDVDRALTISKMAEVFKKIDSGGAEEFARSFRAPGHVPILIASKGL
                     LQERKGHTELCVYLAQLAELTPVVAICEMLDSTTYRALSASKAKIYSDKAAIPLLEAS
                     QLERHARAA"
     gene            5495..5968
                     /gene="ribH"
                     /locus_tag="VE223_01010"
     CDS             5495..5968
                     /gene="ribH"
                     /locus_tag="VE223_01010"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HZC20201.1"
                     /translation="MISIVNKIKIAIVVSEFNRSITFQMLHNAKCQAQRFNADIRYVC
                     YVPGSFDMPLILDELLKKRDVEAAVTLGAVIKGETGHDQIVAENVARLTANLSLKYGK
                     PIALGITGPNMTIEQARDRIRLVPVHAVNAAVNMAIRIKKLKKVKGSKGKVIIID"
     gene            5965..6750
                     /locus_tag="VE223_01015"
     CDS             5965..6750
                     /locus_tag="VE223_01015"
                     /EC_number="3.5.4.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase IIa"
                     /protein_id="HZC20202.1"
                     /translation="MTIQITIIRIEGYGPWTLTLGSDREGALQMLQARIYYDVQRLFS
                     ERESLVFPNRFDEYFAISNGLSVQDHILIQKELKKLYKNLNLSMAIGNGITPFEANIN
                     AYDARRREKILDKRTRIFGEASCLAFSCLNPSSIYDFAQIMHIDIDGSTDVSCKLSPY
                     EITSLVSKIHANLSQEFLKKGSMTFFIGGDNFMVISNETKKQDAQKIIETVTKGIDIK
                     LNCGIGIGRTGRKAAEAATRALDTIRTLRNEGKIQPFYEIQCL"
BASE COUNT         2347 a         1140 c         1337 g         1972 t
ORIGIN      
        1 aaacaaaacc gttaggtacc actaaaccta ttagcataca tctgttgata ccgtcagcca
       61 aataacgtat gcttacatct gccctacaac aaatggtgct actatgacag caattatcgt
      121 tgctgcgatt aatgcaaaaa gaaaaagtcg ctcccgcgtt attttcatag ttattatata
      181 gagataatca ttgatatata atctatttgc tgtcggagta ataatatcca tagtagtggt
      241 tatttttgag gcgtttgctt ttaatagatt acatggatta aaacattttg tcctgataga
      301 catattagtt tcaatatctt caaaacgtga ccttgacaaa gcaagcaaaa tacagaaagt
      361 catcataatg ttactaattt ttttctgata taatttcacc tgtcgagcta tccacgaagt
      421 aaatgtgatt gtcttttata acttcccatg caaaataatt cccagttgta atggtaggtt
      481 cgcccttacc aagatatttt ccgattgaat tggaattatc gtcagattca aatatagcgc
      541 cattaccttt aatgtagaca tactttgtag agaaatcgga caaattgtat cttgcaagat
      601 tttccttttg tgcaaccgcc gtaattgctt ctttggagga gattggagca gaaaataaag
      661 caggaacttt taaagaattt tgcaatccta aatataccag aaatgtgatt ataccaccaa
      721 tgccaacaag gataattatt ttcttgtcca tgttttatta atgacaatat tgtatgtgta
      781 gttcaatttt ttctttttta ttgggtaaga tagtagttag tatcaaccac tggttttgtt
      841 aaattaatga agcgtactac ttagagcaaa accaaactca taatatggct acaagtgatg
      901 gaaataaaat aataactccg actctaaaga tcaaataaat actgctgcat ttaaataata
      961 ataatagaac tttcaaaaat catccatacc aaaacttgaa aagcattcat tacatctgaa
     1021 cttctctttg ccaggatttc ctgagacgac ttcaagtgcg cttttcatat tacatttcgg
     1081 acatctacca tatatcgttt ttttaggcaa gcgtttgttc ttagttaaaa ccctatttag
     1141 aactatgcag atacatttat cttgatcttc ttatctactc caatcttatt tgaacaacac
     1201 aaccataatg atttttggta cgttatgtct gatggcttct attttgtgtt aacttttacg
     1261 attgatgaag aacgtgtttt atctagataa cataaagatt ttgataataa attatgagaa
     1321 tcgcttaatc cgttagtagg atagtcaatg taggatactc aagagcattt ataataatat
     1381 ctttggtagt cacttctgtt ttggatatta tctacactat tgtttagaag gcaaattaag
     1441 gatacaggca aagctcaagt acctatagca ttttataaat ccgtaacaca aaatgatatt
     1501 tagataggat aaatatcttg gcgaaataga tatacataat caactgataa gttccataga
     1561 tacatgcatt attcaagatg caacaccaag aacagaggca gcagtgtcct ctgtttaatg
     1621 acatcgagac aattccgaaa atccctttca tctagttaac tatattaagt attaagattg
     1681 ctttcaagtt atgaaagcag ccgtatttcg tgaatacaat aaagatcctg caaaagtcgt
     1741 aaagattgaa gacattgata tgccaaaatt aaaacctact gaggttatgg tgaaaccaga
     1801 agcggcagcg tataattata atgacctgtg ggccatttgg ggagaaccga tcaaagtccc
     1861 atcaccacac atatctggaa gcgatgtggc tggtaccgtg gtggaagtcg gagaggatgt
     1921 cacaaaattc aaagttggag aaagagttgt gtcacattct aacataagct gcagagtatg
     1981 cgaagcctgt acttccggta gagaatatga ttgtattgat agattagttt ggggctttca
     2041 aactggtcca ttgtggggtg gcttttgtca gtatacacat ttgccagagg taaacgtagc
     2101 caaaatacct gaaaatgtat ctttcgacga tgcagcggca atctccatgg ttgggatgac
     2161 tgcatggcac atgttggtag gaagagccaa gataaagcct ggccaaatgg tcctagtcat
     2221 gggtggaact agtggagtag gcatggcagg aattcagatc gcaaaattgt acaattgtac
     2281 cgtaatcgcc acagcaggta acaaagaaaa gatggacaaa tgctcagaaa taggcgcaga
     2341 ttatgtggtt aaccacagag aagcagactg gtataagaag gttagagaga ttactcataa
     2401 acagggtgtg gatgttatct tcgaacacat tggaaaggca gtgtttcccc aagaagttgg
     2461 ccttttaaag atggccggaa cgcttgtttc aactggtgca acaactggtt acgattcaac
     2521 tatcgatcta aggtaccttt tcttcaaggg aataaattta ctgggctcta ctcagggaac
     2581 aaaagctgaa ctagaagaag taatttattg gacaggtaaa ggtaaaatta aacctcttgt
     2641 tcacaccatt cttccgttta gcgacatggt aaaaggtcat gtaatgatgg caaaagctga
     2701 gcagattgga aagattgtta ctacaccaca gagactttaa tctttctcct cattttcatt
     2761 tgtccaaatg atgcttagaa gtctaatttt tgttcctagt aacagcaagc ggtttattga
     2821 gaaggccaag gcgttaaatg cagacataat atgctttgac ctagaagatt ctgttccttt
     2881 aaatgaaaaa gacatcgcaa gacaaatgat cacagacgca ttaacaaaaa ggaaagagta
     2941 caaatcaaat atttatatca gaataaattc attggaatcc ggtctagctt tttcagacct
     3001 cgatgcaata atccatgaag gaattgacgg aattgtcata ccgaaggtaa atgatgaaga
     3061 ggaggttaat aaaattgaac aactaatttc taatcttgaa aatcaaagag gagtatgtga
     3121 agatagcatc aaattaatgc catctattga aactgcaaag ggggtagtca atgcttatcc
     3181 aatagcaaag tcggttcaga gaataaatgc actggtgttt ggagtttttg attttctcta
     3241 cgatatgcat cttgattatg tcgaggagga cggaattgaa tacggatatg cacgctcgaa
     3301 aattcctgtc gatgcaagag ccgcaggatt agctgcactt gatggtatat ggcagaaagt
     3361 agatgacata gacggattta aaaaagatgc taatgtagct aagagattag gatactcagg
     3421 caagacgata attcatccta atcagatcga gccaattcac aagattttcg tacccagcaa
     3481 aaatgaaatt gaatgggcta agaaagtgtt ggaagtacta agagattcaa tcgaaatggg
     3541 acacggaaaa ggtgcagtca agttggaagg aaaaatgatt gatgctgtgc attataaaca
     3601 ggctaaggca attttaaatg ctttatatga accaaaatag aagcaattac ttatgtagaa
     3661 catagccaag atatcatcag caaaatctag accaccacct tatcatttca ctaaacaatt
     3721 caggttatcg atacaattaa ccaatcaaca ggatatgcaa aaaatctatc tgactatttc
     3781 tccagtctct tccaaaatcc tttctgtacc tgaagggtgc ttgagtatac catattcttc
     3841 aaacaattca tctaatgtat tttttctgat aaaatattca tcctcatcaa attcatcttc
     3901 atctccataa tattcacgta taagaacttt gaaaacacca tccttaacct cccttacgag
     3961 tatatctgca tcctcgcctt catatacgta atactttaca taatcagata ttggtatctc
     4021 tgtttccatt ttatttctct atcctcaaat gagaggcgaa tttgccatat tttaactgaa
     4081 taggactttt atatcttctt ttgtgaaagt atgcttttta tctggtctaa tgtatggtaa
     4141 acaataagag ttgtttactg gtatcataga aggtgttggc acagtaaagt caatatccaa
     4201 agttaaaagc aaaaacaaag tgccaggagc agacatccag ctgagtatat atctagggag
     4261 gctcaagaag ggtttgaaga tcggcaatag tgtaagcatc gatggcgtct gtcttacaat
     4321 caccaggttg cataaaggat cagcagattt tcagttagtg gatgaaactg tcaagcgtag
     4381 ttgcttaggt ttgataaagc cgggtgataa agtaaatatc gagagaagtt tacgactagg
     4441 tgatagattg gaaggacata tagtcctcgg tcatgtagat acaactggca ttatcgaaca
     4501 aatcatcaat tcctctggag aaacaaagat gtggataaaa attaatgacc aagagatatt
     4561 tcattcaatt gtccctaaag gcccgttagc agtagacgga ataagtctaa cggttgtaga
     4621 tgtaaaggat caaaagatct ctgtcgcttt gataccccat accttatcta atactacatt
     4681 agggttaaaa tcaaagggtg acagagttaa tatagagata gacgtaattg gcaggtatgt
     4741 gacttaccag aaatgtagtt tgaactcaaa ttttagtaaa ctatataacg aatttctgca
     4801 gggtaaataa ttgtttgtct gctatcgaag aagctatatc tgcattgcgg agtggtaaat
     4861 ttgtcctcat ccatgatgaa aagagtcgtg aagatgagat tgacatggta attgctgctg
     4921 aacgaattag gccatggcat gttgcgagaa tgaggaatga tgctggagga ctactctgtg
     4981 tggctattac aaatgaaata accgtaaaat taggacttgt gtatatgcag gaaataatgc
     5041 aaagtctatc aaatgttaat cctattttcg caaaattaag tacaggcaaa tcaccatatg
     5101 gagacaaccc atctttttcg atttctgtca atcatcgtga tacatacact ggaattactg
     5161 atgtcgatag agcattgaca atttcgaaaa tggcagaagt atttaaaaaa attgattctg
     5221 gaggagccga agagttcgcg aggagtttca gagcacccgg ccatgtccca attctaattg
     5281 cctctaaggg tcttcttcag gaaagaaagg gacacactga gctttgtgta tatctagctc
     5341 agttggccga gctgactcct gtcgtggcaa tctgtgaaat gttagattct accacctatc
     5401 gggcattatc agcaagtaag gcaaaaatat attccgataa agccgccatt ccattactgg
     5461 aagcaagtca actagaaaga catgctaggg cggcttgata tcaatagtga acaaaatcaa
     5521 aatagctata gtagtctctg aatttaacag aagcattaca tttcaaatgc tccataatgc
     5581 aaagtgtcaa gcccaaagat tcaatgcaga catcaggtat gtgtgttatg taccaggctc
     5641 atttgatatg ccattaatac tcgacgaatt gttgaaaaaa agggacgtag aggctgcagt
     5701 gacattgggc gcagtgatca aaggcgagac aggacacgat caaattgtgg ctgaaaatgt
     5761 agcaagacta accgcaaatc tttcattaaa atatggaaag ccaattgcac ttggaataac
     5821 aggtccgaac atgactattg aacaagcaag agacagaata agactcgtac cagtgcacgc
     5881 agtaaacgca gcagttaata tggcaattag aatcaaaaaa ctgaaaaaag tgaagggttc
     5941 aaaagggaag gtaataataa tagattgaca atacaaataa caattattag aattgaagga
     6001 tatggtccat ggacacttac gcttggaagt gatagggaag gagctctaca aatgctccaa
     6061 gcaagaatct attacgatgt acaacgacta ttttctgaaa gagaatcctt agtatttcca
     6121 aatagatttg atgaatattt cgcaataagt aatggtcttt ctgttcagga ccacatttta
     6181 atccagaagg agctcaaaaa gctttataag aatcttaatt tgtcaatggc aattggaaac
     6241 ggaataacgc catttgaagc taatataaac gcatacgatg caaggaggag agagaagatt
     6301 cttgacaaaa gaactagaat ttttggggaa gcatcatgtc tagcattctc atgtctaaat
     6361 ccaagttcaa tttatgattt tgctcaaata atgcatattg acattgatgg ctcgacagat
     6421 gttagttgca aattatcacc ttacgaaatt acatcactag tatcaaaaat ccatgctaac
     6481 ctatcgcagg aatttcttaa aaaagggtcg atgacctttt tcattggtgg agacaatttc
     6541 atggtaatat caaatgagac aaaaaaacaa gatgcacaaa aaattattga gacagtaacc
     6601 aaaggtattg atatcaaatt aaattgtggc ataggtattg gaagaacagg aagaaaagct
     6661 gctgaagcgg ctaccagagc acttgacaca attagaacct taagaaatga aggaaaaatt
     6721 cagcccttct atgagataca atgtctatag taataaaaga tgcaagtctt ctgcttggaa
     6781 aagatttaac ttttgt
//
LOCUS       DASQSJ010000048         4481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_5261, whole genome shotgun sequence.
ACCESSION   DASQSJ010000048 DASQSJ010000000
VERSION     DASQSJ010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4481
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5261"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(681..1997)
                     /locus_tag="VE223_01020"
     CDS             complement(681..1997)
                     /locus_tag="VE223_01020"
                     /inference="COORDINATES: protein motif:HMM:NF022062.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIPR family protein"
                     /protein_id="HZC20203.1"
                     /translation="MESKKYIIDRYFGRQIDIIFQVISNEKTLGHPFLRKQSAVYTIE
                     LDSLLKVANQNNELVVTFVSLDILHKMYSDLEEKFFEKNIRSGLDDGKMTNNEIKKSL
                     QMILANKEPSEYFTFYHNGVALTAQELALDGQSLKMTEPRLLNGAQTVKTVKQFVEEE
                     NKKRVDNKNKVQELLNRIKVMTRIVRSREEEFLKRVTINNNRQNPIMPWNLRANDIVQ
                     LQLEEQFRDKLGIYYERRENSLTNLTNEDLEDMNITTHTKAIEIRKLAQTLLALHGEV
                     DKISQVKEVFENERWYNDTFRKEYLDIDPRKMVLLYKIQYRMPTIVKEIQYIGYKRYD
                     HAGKLRNLVWCLAIQGIMNEDKFDSYVQTYGNSLNIEANFNIVLKNIASMKIRFILRD
                     TFNDSFRYREYLNQSKYSFLKTKATYNDCMQVATRRFGWDKKDLLT"
     gene            complement(2047..2457)
                     /locus_tag="VE223_01025"
     CDS             complement(2047..2457)
                     /locus_tag="VE223_01025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20204.1"
                     /translation="MSITVLIENKEINGAYKELSNQYKGRKDNYFALLYLMKKFKITL
                     EEASSCVSFGENECGIDAFYHDRTTRNLYLFQFKWSEDHLLFRDPLQRLVDDGIERIF
                     GNSLWYHQSQSQLLIRLTTCITENSSIIDRVLIR"
     gene            2938..3615
                     /locus_tag="VE223_01030"
     CDS             2938..3615
                     /locus_tag="VE223_01030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20205.1"
                     /translation="MDIPRLCRALAVPGELAEQFVEGTNKTKQYRDGLDAVTHSTNQI
                     TDVLQSYFYLHNNDGKNNNNNHLIASNLNNKQKEAIHTDIKELAIYSKMYYDIEAIKS
                     DPRISVEYPYGNPFDHIIDIMKHGAIIVRFKYVSNNRSLPPEEKVVSYHIMNFKGNDV
                     LGIHVQDDQKFSMCKQWGHGDERLVPLYREYENMVIRWGKEEVVEAVMKNNKRNNEDD
                     DGYEFLY"
     gene            3621..4187
                     /locus_tag="VE223_01035"
     CDS             3621..4187
                     /locus_tag="VE223_01035"
                     /inference="COORDINATES: protein motif:HMM:NF027788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HZC20206.1"
                     /translation="MSNNYLSSKSVTYISVDIECSGPIPGEYSMLSLGACVVGHEHNN
                     DYTFYMEIQPLSDNYVKEALEIAGLSMQELKVKGAAPKEAMEKFADWIAKVSGDRKPI
                     FVGSPIAFDWCFVNYYFIKFLGHNPFGVSGIDLKSVWIGKTNSKWHVTTMDDIKKKLG
                     LEHIAHTHNALEDAKEQSIIFRNMMTLG"
BASE COUNT         1482 a          767 c          804 g         1428 t
ORIGIN      
        1 attttgtgca ggagctcgtt agatatctag aatatgaact caaagcaagc tgctagatat
       61 caaaagaaga atgggaaatg atttaaagca aaagatttta gttcaaaatg gtattatatc
      121 agaacaacag atagaaagga aaccttctat attaaattgt cctaggcttg ttcaaggaca
      181 taaggatcat aaagtcataa ataaaatgtt tgttattcct tccttgcatg tcatctactg
      241 aagaaacgca tgaatgcgaa agatgcgaca catcttatga atccaaggaa gaactcgata
      301 agcacaataa agaagaacat ccagataaat aatttcttat cgcatgattg aaagagagta
      361 atctcttatt tgagttcttt tattttttga attttaaaat ggagcgttac ttgtaacagt
      421 attactcaac ctttcataag gctttgtgga aaacattatt ttgaactagt caaagctttc
      481 taggagtata atccaatata gatattgaat gaatccagat aagctaaact ggcaaatact
      541 atgtaccgtg ttttaaggaa ttcaagaata ccattgtttc ttcatagaaa gagcagcaag
      601 ctaaagaact atatgggaat ggagttccag aaaaacatca tcgttaacct cgagaacttc
      661 aggcgacggt aaccaaaata ctatgtcagc agatcctttt tatcccaacc aaaccttctt
      721 gttgctactt gcatacagtc attataagtg gctttggttt taagaaagga gtacttggac
      781 tgatttagat attctctgta tctaaatgaa tcattgaagg tatctctcaa tatgaatcgt
      841 atcttcattg aagcaatatt cttgagcacg atattgaaat tcgcctcaat attcagagaa
      901 tttccatatg tctgaacgta tgaatcgaac ttgtcttcgt tcattatacc ttgaatcgct
      961 agacaccata cgaggttcct cagtttccca gcatgatcgt atctcttgta gccaatgtac
     1021 tggatctcct taacaatggt cggcatccta tactgaatct tatagagcag taccatcttt
     1081 cttgggtcta tatccagata ctcttttctg aaggtgtcat tataccatct ctcattttca
     1141 aaaacttctt tgacctgcga aatcttatct acttcgccat gcaatgccaa aagggtctgg
     1201 gcaagtttgc gaatttctat cgcctttgta tgggtagtaa tgttcatatc ttccaagtct
     1261 tcattcgtta gatttgtaag cgaattttct cttctctcgt agtagattcc aagtttgtct
     1321 ctgaattgtt cctcgagctg taattgaaca atgtcatttg ccctcagatt ccatggcatg
     1381 attgggtttt gtctgttatt gttgatcgta actcgcttga gaaattcttc ttctcttgag
     1441 cgcacaatac gcgtcataac cttgatccta ttcagcaatt cttggacttt gtttttatta
     1501 tcaacccgtt tcttattttc ttcttcaacg aattgcttta cggtcttgac agtttgagct
     1561 ccattcaaga gcctaggctc tgtcatttta agtgattgac cgtcaagtgc aagttcctgt
     1621 gctgtcaagg caactccgtt atgatagaag gtaaaatatt ctgatggttc tttatttgcc
     1681 aaaatcattt gtagagattt tttgatttca ttattcgtca tttttccatc atcaagtcca
     1741 gacctaatgt tcttttcaaa aaatttctct tctaggtcac tatacatttt atgtaagatg
     1801 tcaagtgaga caaaagtgac tacaagctcg ttgttttgat ttgcaacttt taataaactg
     1861 tcaagttcaa tagtatagac tgcactctgc tttcttaaga agggatgacc caaggttttt
     1921 tcatttgata taacctgaaa tatgatatcg atctggcgtc caaagtatct gtctatgatg
     1981 tatttcttag attccaatct ttctctaagc agatctagta ccttgctttg ctctgctttg
     2041 attggatcac cgaatcaaga ctctatcaat tatgcttgag ttttcggtaa tacatgttgt
     2101 caatcgaatt agtagttgac tttgactttg atgataccat aatgaattac caaaaatcct
     2161 ctctattcca tcatcgacca gtctttgtaa tggatccctg aataacagat ggtcttcaga
     2221 ccatttgaat tgaaacaagt acaggtttct agtagttctg tcatggtaga acgcatctat
     2281 tccacactca ttttcgccaa aagatacaca tgatgacgct tcttctaaag taattttgaa
     2341 tttcttcatc aggtaaagaa gtgcaaagta attatctttt cttcccttat actggttaga
     2401 taattctttg tatgccccat tgatctcttt gttttcaata agaacagtta tggacatttt
     2461 ttaaccccgt acgatatttt atagatcctt aaaagaagtc tctgtcaata acagtttaca
     2521 aaagaccttg gccgtttatt acagtatttt ttgaaattat cgattaacgc tcagaacaat
     2581 aatgaaaaac atgtttattg tttgatggat agtgaatgga aaaaactaaa cgacgaaaac
     2641 agtagaactc ctctatatgc ggggacagaa tactacagaa taatgactat atattaaaga
     2701 gaggcggtct tgatactatt ggacacagat agcaatattt atccaaaaga agaataattc
     2761 acaatagtaa atattgatat gatattatta tcctctaagc tatcttcttt tgatccaaag
     2821 gtcagttaca ggtcaaggac attagatgaa ttaaactcac tatgcaatgt actcaatgat
     2881 tgcaaatcta aattgagcaa tagtcttcag tattacctac aaaaatacag caaattgatg
     2941 gatataccaa ggctatgtag agctctagct gtccccggag aacttgctga gcagtttgta
     3001 gaggggacta ataaaacaaa acagtataga gatgggttag atgcggtgac acattcaaca
     3061 aatcaaatca ctgatgttct tcaaagctat ttttatctgc acaataacga tggtaaaaat
     3121 aataataata atcatcttat cgcatcaaat ctgaataata agcaaaaaga agcaatccat
     3181 actgatataa aagaattggc aatatattca aagatgtact acgatataga agctataaaa
     3241 tcagatcccc ggatatcagt agaatatcct tacggcaacc cctttgatca tataatagat
     3301 ataatgaagc atggtgcaat aattgttagg ttcaaatatg tttcaaataa tagatctctt
     3361 ccccctgaag aaaaagtagt aagttaccac atcatgaatt ttaaaggaaa tgatgtgctt
     3421 ggtatacatg tccaagatga tcaaaagttt agtatgtgta aacaatgggg gcatggtgac
     3481 gaaagacttg ttccacttta tcgagaatat gaaaatatgg taataagatg gggaaaggaa
     3541 gaagtagtgg aagctgtaat gaaaaataat aagagaaaca atgaagatga tgatggttat
     3601 gaattccttt actaaaatag ttgagtaata attatttatc ttctaaatca gtaacttata
     3661 tctctgtcga tatagaatgt tcaggaccta ttcctggaga gtatagtatg ttaagcttag
     3721 gggcatgtgt tgtaggacat gagcacaaca atgattatac attctatatg gagatacaac
     3781 ctctctcaga caattatgta aaagaagctt tagaaattgc aggactttca atgcaagagc
     3841 tcaaggtaaa aggtgcagcg ccaaaggaag ctatggagaa atttgctgac tggattgcaa
     3901 aagtatcagg tgacagaaag cctatatttg tcggatcgcc tatagctttt gattggtgct
     3961 ttgtcaacta ttattttatt aaattcttgg gtcataatcc ctttggtgtc tctggaattg
     4021 atttaaaatc cgtatggatt ggaaaaacca acagcaagtg gcatgtaact acaatggacg
     4081 acataaagaa aaaacttggt ttggagcata tagctcatac acataatgca ttagaagacg
     4141 ctaaagagca atctataatt tttcgcaata tgatgactct aggttaggtt aggcctaaat
     4201 tgcatacacg tattagagca catgttatca aacacaaaag ctaaataacg aaaacagccg
     4261 aaccctatta catgcgggga cagaatccca ccgaacccga tccgatatca gtgcttttta
     4321 gtgggtcctg tgaataaaaa ggtgagtaaa taaaagagtg ttaaatgaaa aaggatcgat
     4381 atccgtagcg aaaaatgaag aggaggaact agaccatgga tgctatacct ctattccata
     4441 aaatccccag ctacaaagga gaagtatttg ttacgactag g
//
LOCUS       DASQSJ010000049         3077 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_204544, whole genome shotgun sequence.
ACCESSION   DASQSJ010000049 DASQSJ010000000
VERSION     DASQSJ010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204544"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /locus_tag="VE223_01040"
     CDS             complement(<1..616)
                     /locus_tag="VE223_01040"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZC20207.1"
                     /translation="MQFCLEAWGTDYEKIKDTCIAAEKLGYYGFYYGESLADIDLDCW
                     TVISALVSYTNKIKLGPVITYLLPQYRSIALLAKQAASFQEISDGRLEFRAGAGATLQ
                     YATQWWYPYGIDYPKESERVSILDEGLQVLQMLWGTDNKPSLHFNGKYFRINGATTMK
                     STIPITVAAKKKRMMKVAVKHASIWESSYITPQQFSSLNAEFEDV"
     gene            complement(1064..1366)
                     /locus_tag="VE223_01045"
     CDS             complement(1064..1366)
                     /locus_tag="VE223_01045"
                     /inference="COORDINATES: protein motif:HMM:NF013422.4"
                     /note="in yeast this protein is involved in start site
                     selection during the initiation of translation; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HZC20208.1"
                     /translation="MSNQYSQDSIKDILDELDKESARIVISKEIRGRYKKTSTVIRGI
                     EHDSKEAEVLTSELKTKIGTGGTYKEGKIILQGDHREAVKQLLIKKGFNEQSIEVL"
     gene            1628..2077
                     /locus_tag="VE223_01050"
     CDS             1628..2077
                     /locus_tag="VE223_01050"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HZC20209.1"
                     /translation="MTNNNSKCDKCNLTIHPHFIGYHKCGYSNCPICKNAITSSDYWY
                     HIRAHPGHENDSPPPRRETAEKRGYGRSHGSGSASRSFNRDSPAPKPVEVGKEYEVDI
                     TEISRQGDGIARVQGFVVFVKNGKAGQKVKAKVEQVGNRFATATVVS"
     gene            complement(2360..2530)
                     /locus_tag="VE223_01055"
     CDS             complement(2360..2530)
                     /locus_tag="VE223_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20210.1"
                     /translation="MSIEEHEIPEEINDHLKIFGKNADEVDYNNIGQCPFCGSRIDEF
                     NFCACGGMMGVD"
BASE COUNT          967 a          575 c          566 g          969 t
ORIGIN      
        1 aaacatcctc aaattcggca tttaaagaag aaaattgttg cggtgtaata tacgacgact
       61 cccatatact ggcatgcttc actgcaacct tcatcatcct ctttttcttt gcggctactg
      121 taatagggat agtgcttttc atcgtagtgg caccatttat tctaaaatat tttccattaa
      181 agtgtaatga tggtttatta tcggtacccc ataacatttg gagaacctgc agaccttcgt
      241 caagtattga aactctttcg gattctttcg gatagtctat tccgtatgga taccaccatt
      301 gtgtcgcata ttgaagtgtc gctccagctc cagctctaaa ttctaatctt ccgtcagata
      361 tttcttgaaa agatgctgct tgctttgcta gtaatgcaat acttctatat tgaggtagta
      421 aatatgttat tacaggtcct agttttattt tattggtgta agatacgaga gcagatatta
      481 cagtccagca gtcaagatct atatctgcta atgattcacc ataataaaat ccatagtagc
      541 ctaatttttc ggcggcaata cacgtatctt taatcttctc ataatcagta ccccaggctt
      601 ctaagcagaa ctgcacacag tgaatgtact gttatctcat ataaaaaaat gagaaattga
      661 ttggcccctt cttatgacat ggtctgagga cattcattat gatataatat atgctcttga
      721 cagatgtatg tatcttacaa tgaatagata tatagagaga taattacagg atgagcaatg
      781 gatgggaact aaaagaagct aagattgtga aaaattttca attttcaagc tttatgaagg
      841 ctattgactt tgaataagta ttgaagattg gtgacagggt taaccaccat ccagttatta
      901 cgattaactg gagaactatt aaactctcaa gtcgtttgat ttgatgctat aaccaagctg
      961 gatatcaatc ttgcaaaaag aaatagaaaa agcatcagca taatagttgt atctatcatc
     1021 actaaccctt ctttgaatcc gttatcttta ttgtattctg aaactacaac acttcgattg
     1081 attgttcgtt aaatcccttt ttgattaaca actgtttgac agcctcccta tgatctcctt
     1141 gcaaaataat ttttccttct ttgtatgtac cgcctgtacc gatctttgtt ttcagttcgc
     1201 tggttaacac ctctgcttcc ttcgagtcat gttcaatgcc tcttattaca gtagaggttt
     1261 tcttatacct gcccctgatt tcttttgaaa taactattct ggctgattcc ttgtctaatt
     1321 catctaatat atccttaatt gaatcttgac tgtactgatt tgacacaata ttccttcgac
     1381 tattccagtt gaaaaaactt atggatggtc tttacagtta tctgggaatc gggaatgaag
     1441 cccaaagtgt tcaggctggt tgcaatcgtt cgcatatagt ttggagggaa ctgatctctt
     1501 tcggctgttt gaatacaata ctcactacat tgaatatctg acttgatcat aatagaagca
     1561 ataacggatg tcgccagcat ccgatacatc ctaattgtac ttaatatcaa gaagtattca
     1621 ggcatatttg actaacaata atagtaaatg cgacaagtgc aacctaacaa ttcatccaca
     1681 tttcatagga taccacaaat gcggttattc caactgtcct atttgtaaaa atgctatcac
     1741 aagttccgat tactggtatc atataagggc acacccagga catgagaatg atagccctcc
     1801 tcctcgaaga gaaaccgctg aaaaaagagg atacggaaga agtcatggta gcggcagtgc
     1861 aagtaggagc ttcaacagag attcccctgc tccaaaacca gtcgaagtag ggaaggaata
     1921 cgaagtagac attaccgaaa ttagcagaca aggagatggg attgcgaggg tgcagggatt
     1981 cgtcgtattt gttaaaaatg gaaaagctgg acagaaggtt aaagctaagg tcgagcaagt
     2041 aggaaatagg tttgctacag caacagtagt atcttaacct gtggaagtag ctttgtcaca
     2101 ataaatgagt attattagcg cgtatcgtgt tggctaactc gacgttctgc tgcatatcta
     2161 tgaatggagt agagagatgc gccttcaatt atggaattct acctttaact acgattatat
     2221 cctagaaaat ttataagacg gtttggatta cagactagag gtaactaagt ccctttcatc
     2281 ccattataat caactaaaac tctaatcaac gatttcctat accgaattgt aactgaaagc
     2341 cattcgttcg acttcctgtt caatcaacac ccatcattcc accgcatgca caaaagttga
     2401 actcatctat gcgcgaacca caaaaaggac attgtcctat attattataa tcaacttcat
     2461 ccgcattctt accaaatatt tttagatggt cgttaatttc ttctggtatt tcatgctctt
     2521 ctatgctcaa tacgcctcat cacgtgggtt atacgctctc actcttattt atatgcataa
     2581 ttgataaagg cagtaatata gagatcataa gtaacttaac tgaatattta tgccgttaac
     2641 atctcgttct tgttgagtat gaaagaatag tccgattgga agaaccacta aaggcttcga
     2701 tcattcttca gaaacgaaaa ccgagacata caacgtactg aaatttaagg gtcgtctata
     2761 ctttgttttt gacttgagaa aactttgggg ctgatatgaa ttgtttattg aatgtaaggc
     2821 atgtcgtgaa ggaaatcatc ataactgctc tggtgtaaag aatagagagg atgtcctcgt
     2881 tgagataggg tgtatttgtt tagactataa gaagatggat gttgtgtagc acttttggcg
     2941 actaatcaag gaacatgtga agcagaaaat tcttcgctct ttaaagacgc tatatttaat
     3001 cttgaaaaaa tagacataca tgcaaagaat gaaaagaacc aaattatcat acagctggca
     3061 aaagatcttg agagaac
//
LOCUS       DASQSJ010000050         5202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_241369, whole genome shotgun sequence.
ACCESSION   DASQSJ010000050 DASQSJ010000000
VERSION     DASQSJ010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5202
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241369"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(252..581)
                     /locus_tag="VE223_01060"
     CDS             complement(252..581)
                     /locus_tag="VE223_01060"
                     /inference="COORDINATES: protein motif:HMM:NF015268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20211.1"
                     /translation="MKKKPVGSTDKATNTAAVSPAGDTKTGKKEDLKKIGVKPQQKQK
                     LSVFVEESQGIKSLQSMKAITIQSFARSSGVKISVANAFVKSLEAKGLVKNVGGYSGH
                     RVYKLEK"
     gene            763..2529
                     /locus_tag="VE223_01065"
     CDS             763..2529
                     /locus_tag="VE223_01065"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HZC20212.1"
                     /translation="MNFSLIVDTFEQMEKTSSRLALTDYLVSLLKRTPSDIIDKVIYL
                     IQGKISPDYEGVELGLAEKMAIRALAQSTGLDLAVIEEIYRKTGDLGDAAKEVTKSKN
                     QATLFDDAMTVERVYSTLDKIARSIGSGSQEVKLRLVSSLLNNATSRESRYIMKFVMG
                     TLRLGIADHTVMDALALAFTGDKSNRHTLENGYNVSSDLGTVAKLLATKGLQSVKSLQ
                     ITLFKPIRPMLAERVSTSEEALERTGCEAAAEYKLDGERIQVHKRKEKVELFSRRLER
                     ITGHYPDVAEAIKSIDAEEAILEAEVVAINVNTDEFLPFQELMHRRRKYGIKQAIENY
                     PVIMNFFDVLHLDGDDKTSLDYIHRRQVLEKIIQGLSNEKLRLIRQTIVKKSEQIDKF
                     MASAIENGCEGLMIKQLTSTYRAGAREFAWVKLKREYRSDLADTLDLVITGALYGRGR
                     RVGRYGALLLGAYDSKFDMFRSTCKVGTGFTDQLLEQFYSNLENHLITHRHARVDTGM
                     EMDVWFEPKIVIEVIASEITLSPSHTAALDTIRPGYGLALRFPKFTGKIRYDKKPEDA
                     TGVEELVSLYKKQMRTIKTGRK"
     gene            complement(2848..3213)
                     /locus_tag="VE223_01070"
     CDS             complement(2848..3213)
                     /locus_tag="VE223_01070"
                     /inference="COORDINATES: protein motif:HMM:NF016308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gar1/Naf1 family protein"
                     /protein_id="HZC20213.1"
                     /translation="MAVYDDEWILMVVTKSEERGEVMHLAKSGRLIIRLETTGKETKS
                     GELLVDENGRPIGKVVEIIGPVNAPYASVAPMTDRINKIIGIRVFSGGFLPKRQASRS
                     KNNLQHKGFGYGSRIRKNQ"
     gene            complement(3306..3626)
                     /locus_tag="VE223_01075"
     CDS             complement(3306..3626)
                     /locus_tag="VE223_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HZC20214.1"
                     /translation="MKDYEHIILWLDYFNKHLSKRKGRKVKRDHAVFDPTMTELIDAA
                     KLVGYNPTTEDTNDKARYPRRSFVRSGYIMLPKLEDAKKSAIITTIAEKMSQKRNKQK
                     ISQR"
     gene            3745..4194
                     /locus_tag="VE223_01080"
     CDS             3745..4194
                     /locus_tag="VE223_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HZC20215.1"
                     /translation="MARIHAHTRGKSHSARPTSKDTPSWLTHSQGEVSSLVVQLSKEG
                     LTSSEIGIRLRDEYAIPLVKPALGKNITKVFDENNIKQDMPEDLNQLVQKAIGLQKHL
                     RIHNSDHRNVRSLELIEAKIHRLSRYYKRVGKLQKNWKYAAVIAQLE"
     gene            4204..>5202
                     /locus_tag="VE223_01085"
     CDS             4204..>5202
                     /locus_tag="VE223_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HZC20216.1"
                     /translation="MGVNELYRALKPFCEKIRSVGENGNDIFIITHLDADGIISASII
                     CSSLTRLGAKCTIRTVSDLTLDLIEQIQSENHDFYIVTDLGGGMANELLKAVNNKWMI
                     IDHHQIPSEEMLGDYNDQILNSWKYSIDGGKEICAGGMAYMVANTLDRKNRDLSSIAV
                     VSAIADRQDQGDKKSLIGMNSEIVKTAQSLGLISVDLDLMFTGRETRPLHEALAYTSF
                     PYIDGLTWDTENCYTLFKNAGVKMKDNGRWRALSEISQEEKSIILDAIAKFVATSSQN
                     ITANIIDNLMGYRYTLINEDQRSQLRDAREFSAMLNACGRIGKAGVGIGICMGDRNL"
BASE COUNT         1708 a          953 c          975 g         1566 t
ORIGIN      
        1 ttatcttgat acatcaaagg agcagttcat atatttatcc agtttacaga taatagtaga
       61 ttggtagatt atcatcatat aaaaagcagt aataaacctc tttttatagc aatgtttgct
      121 ggaaaacatc tttttattaa ctaagggaca gtttgactta ttttagatgt tgtccgttaa
      181 ttatttacct gccctttaca tttaaggtat catgtcattc aattcgtccg acggtgcaaa
      241 tacataattt actatttttc caatttgtag actctatgtc cactatagcc accaacgttc
      301 tttaccagtc cttttgcctc aagagatttg acaaaagcgt tagcaacaga aatttttaca
      361 ccagacgatc ttgcaaagct ttggattgta atagccttca tactctgtaa tgattttata
      421 ccttgggatt cttctacgaa aaccgataac ttttgttttt gctgcggttt cactccaatc
      481 ttcttaagat cctccttttt tcctgttttt gtgtcgccag ctggactaac agcagcggtg
      541 ttagttgctt tgtctgttga tcctactggc ttcttcttca tgccgcccat accaccaata
      601 ctggattaat gcgccttata aattctagtt cctaaaatag gcattatttc cagttcaata
      661 caacagcagc ttaaatcaat aactctatgg attatccaat attccctact gtaaaatatc
      721 atctaaaaaa cttaaaacgg gataatatcc ttaaaatcat cattgaactt ttctcttatt
      781 gtagatacat ttgagcaaat ggagaaaaca tccagtagac ttgctcttac tgattatctc
      841 gtttctcttt tgaaaagaac accatcggat attattgata aagtaatata ccttatacag
      901 ggtaagatct cccctgacta tgaaggagta gagttaggct tagcagaaaa aatggctatt
      961 cgtgcacttg cccaatccac aggattagac cttgcagtta tagaagaaat atataggaaa
     1021 actggtgacc ttggcgacgc tgctaaagag gtgacgaaat caaagaatca agctactcta
     1081 ttcgacgatg caatgactgt tgaaagggta tactcaacct tagataagat tgcccgttcc
     1141 atagggtctg gttcgcagga agtcaaacta aggctcgtaa gcagtctttt aaacaatgca
     1201 acttcaagag agagccggta tataatgaag ttcgtaatgg gaacgttacg actcggtata
     1261 gcagaccata ctgtaatgga tgcattagcg ttggcattta caggagacaa atccaacaga
     1321 catacactag aaaacggtta taatgtttcc agtgacttag gaacagtagc aaaactatta
     1381 gctacaaaag gtcttcaatc tgtaaaatca cttcaaataa ctttgtttaa accaattaga
     1441 ccaatgctgg cagaacgcgt aagtacttcc gaagaagcat tagaaagaac gggttgtgag
     1501 gctgcagcag aatacaaatt agacggcgaa agaatacaag tgcataaaag aaaagaaaaa
     1561 gtagagctct tctccaggag acttgagaga atcacaggtc attatcctga tgtcgcagaa
     1621 gcaataaagt caattgatgc agaagaagca atattagaag cagaggttgt agccatcaat
     1681 gtgaataccg atgaatttct tccttttcag gaactaatgc atcgtcgcag aaaatatggg
     1741 ataaaacagg caatagaaaa ttatcccgtc attatgaatt tttttgatgt attacatctc
     1801 gacggagatg ataagacttc gttagactat atccatcgac gtcaagtact tgaaaaaata
     1861 atccaaggat taagtaatga aaagctaagg ttaattcgac aaactatcgt caaaaaatca
     1921 gagcaaattg acaagtttat ggcctctgcc attgaaaatg gatgtgaagg actgatgata
     1981 aagcaactta caagcacata cagagcagga gctagagaat tcgcatgggt gaaactaaaa
     2041 cgtgaatacc gaagcgacct cgcagataca ctggatctgg tcataacagg tgcactttat
     2101 ggcagaggtc gcagagttgg gagatatggt gcccttttgc ttggagccta tgattctaaa
     2161 tttgacatgt tcaggagtac atgtaaagtt ggaaccggtt ttactgatca acttcttgaa
     2221 caattttata gtaatttaga aaatcatctc attacacata ggcatgcacg ggtggataca
     2281 ggaatggaaa tggacgtatg gtttgaacca aaaatcgtaa ttgaagttat tgcttctgaa
     2341 ataaccctaa gtccttctca tactgcagct ttggatacaa taaggccagg atatggactc
     2401 gcactcagat ttccaaagtt tacgggtaaa ataagatatg ataagaagcc agaagacgcc
     2461 actggcgttg aggaattagt atctctgtat aaaaaacaaa tgagaactat aaaaacgggt
     2521 agaaaataaa attattatta taaccattca cattccaaaa ttgcaataac cttcactgta
     2581 gacatttaca taataaagaa tgcaattata acatattgta agatggctta atctatttac
     2641 agacacgcat aataaaatga ttgaaaacag gaaggcgaac atcttaagtt aacagagccc
     2701 actgaaaata ttttcacctt taaattgagt agttcacttc atttgcatac aaagccaacg
     2761 aacactttga cgatgtagac atagcttcgg catacgtata attttttaca aacacatgct
     2821 ccaaatgaag aattaatcta tattatctta ttgattcttt cttatcctac taccatatcc
     2881 aaagcctttg tgttgtagat tattcttgga cctagaagct tgccgtttag gtaggaatcc
     2941 accactgaag accctgatgc ctattatctt gtttattctg tccgtcattg gtgctactga
     3001 tgcataaggt gcattaacag gtccaattat ctcaactact tttcctatag gccttccgtt
     3061 ttcatcaact aataattcac cactctttgt ttccttccca gtagtttcga gtcttataat
     3121 gagccttcca ctctttgcta aatgcataac ctcgcccctc tcctcggatt ttgtaacgac
     3181 catcaagatc cactcatcat catataccgc caacaatatt tttaggttgt tgatacacaa
     3241 tatcccgaca ttaaattttt actcatcaaa gatacagaat attgaatgtt actacctttt
     3301 ggccgctatc gttgactaat tttctgttta ttcctttttt gtgacatttt ttctgcaatg
     3361 gtagtaatga ttgcagactt ttttgcatct tccaattttg ggagcattat gtatcctgat
     3421 ctaacaaaag atcttctagg ataccttgcc ttatcattag tatcttctgt agttggattg
     3481 taacctacca gtttggcagc atcaattagc tctgtcattg ttggatcgaa aactgcgtga
     3541 tcacgtttaa ccttgcgtcc cttccgtttt gatagatgct tgttaaaata atcaagccat
     3601 aaaattatat gctcgtaatc cttcaactta tattatttta gtagtgttaa atattaagat
     3661 tgataaccaa aagatgacag ttattttagg ccataaaggc aatcaagtaa catttaagat
     3721 atgtatcagt attctccata gaatatggca cgaattcatg ctcatacccg cggcaagtct
     3781 cattctgctc gtccaacttc taaggacaca ccttcttggc taacacacag ccaaggcgaa
     3841 gtatcttcat tagttgtcca gctatcaaag gagggattaa catcaagtga gattggcatt
     3901 aggttgcgtg acgaatatgc gataccactt gtaaaaccag cgttgggcaa aaacattacc
     3961 aaggtatttg acgagaataa tattaaacaa gatatgcctg aagacttaaa tcaactagtt
     4021 caaaaggcca taggacttca aaaacatctt agaatccaca atagcgatca cagaaacgtt
     4081 cgttctttgg aactaattga agcaaagata catagacttt ctagatatta caaacgtgtt
     4141 gggaaacttc aaaagaactg gaagtacgca gcagtaattg ctcagctaga gtaagagctt
     4201 agcatgggcg tcaacgagct ttatcgagct ctaaaacctt tttgtgaaaa gattcgttca
     4261 gtaggggaaa acggtaacga tatttttatc attactcatt tggatgcaga tggtataatt
     4321 tctgccagca taatttgttc ctccttaaca agactgggcg ccaaatgcac cattcgaact
     4381 gtctctgatt tgactttgga ccttattgaa caaatacagt ctgaaaatca tgatttctat
     4441 atagttaccg atcttggagg aggaatggct aacgaattat tgaaggctgt taataacaaa
     4501 tggatgataa ttgatcatca tcaaattcca tcagaagaaa tgttgggaga ttataatgat
     4561 cagattctaa attcgtggaa atatagtata gatggtggta aagaaatttg tgctggagga
     4621 atggcatata tggtagcaaa cacacttgac agaaaaaata gggatctttc ctctatcgct
     4681 gttgtttcgg cgatagcaga taggcaggat caaggtgata agaaatcact tataggtatg
     4741 aattcagaaa ttgtgaagac cgctcagtca ttaggactaa tcagtgtaga tctagatctt
     4801 atgtttacag gacgtgagac aaggccgctt cacgaagctc ttgcttatac atcatttcct
     4861 tatattgacg gattgacctg ggatacagaa aactgctata cactatttaa aaacgctggt
     4921 gtaaagatga aagataatgg gaggtggcgg gctctgtcag aaatatcaca ggaagagaaa
     4981 agcattattt tagatgccat tgccaaattt gtagctactt cttcccaaaa cattacagcc
     5041 aatataatag acaatcttat ggggtataga tatacactta taaatgaaga tcaaagaagc
     5101 cagcttcgtg atgctagaga gttttctgcc atgcttaatg catgtggaag gatcggaaaa
     5161 gctggagtag gcattggaat ttgtatgggg gatagaaact ta
//
LOCUS       DASQSJ010000051         2137 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_5732, whole genome shotgun sequence.
ACCESSION   DASQSJ010000051 DASQSJ010000000
VERSION     DASQSJ010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5732"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..352)
                     /locus_tag="VE223_01090"
     CDS             complement(<1..352)
                     /locus_tag="VE223_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20217.1"
                     /translation="MHIIKAIILLVLLVAGVIETYNICIIFDLKTNAYSYAHAVVTPN
                     SSTTTNSTTALDYGIGKNAGRIAAVHDFSSLNGRSLYNPRINQGSSNYRIGYSVGYNE
                     EWKQLVSAANSSMSN"
     gene            922..1095
                     /locus_tag="VE223_01095"
     CDS             922..1095
                     /locus_tag="VE223_01095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20218.1"
                     /translation="MMSSESDDETLDRGDIAQQEQERTMKEAERPNKEKQTERRDAKD
                     RGEAAKQEQERIR"
     gene            1199..1426
                     /locus_tag="VE223_01100"
     CDS             1199..1426
                     /locus_tag="VE223_01100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20219.1"
                     /translation="MKGNTKYCTGLNSQAIDYKKTMARYELQNINNPIAILNRDIYNK
                     RNEVAYLRFEVQELEEYLRGPKNHIQQQPIS"
     gene            1683..1901
                     /locus_tag="VE223_01105"
     CDS             1683..1901
                     /locus_tag="VE223_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20220.1"
                     /translation="MTITFYKCGCWVQTEQQPSYTELVFVKFLKRLRLPHPRSRHRII
                     VDSYLCIKHELEQKEEAMKEWEERMSEE"
BASE COUNT          764 a          360 c          407 g          606 t
ORIGIN      
        1 aatttgacat gctagaattt gcagcagata ccaattgttt ccattcctcg ttataaccaa
       61 cactatatcc tatacgataa ttgctgctac cttgattaat ccttggatta tagagactgc
      121 gaccattcaa agatgaaaaa tcgtgtacgg cagcaatacg gccagcattc ttaccaatac
      181 cataatctaa agctgttgtt gagttagtag tagtagagga gttaggagtt acaacagcat
      241 gagcatagct atatgcattc gtctttaaat caaatataat acatatgtta tatgtttcaa
      301 ttacaccagc aaccaacaaa acaagcagaa tgattgcttt tattatatgc acacacatat
      361 ttcacctgtt caccctattc aactttatta aactgaaatc ttctcctcta tttgcctatg
      421 aactgctgct ggtgcactag tagtgttttt gggaggacta agttgctatt aattgcatcg
      481 agtatctttt tgttattaag cgtcgtcaat aggaataata tacataggaa caatatcagc
      541 agaagtatat atctttgtaa tttaaggtag catagatgaa acgctccaaa attaataaaa
      601 aacacacgca tatttacagt agacagagat caggaagtaa aaagtatgga aaggctgaaa
      661 gaagaatgag gaacaaacca cggtaatata ctaggttatc cttatcaaaa agctctagct
      721 tgtagctaga gtaacaatgt ttcaacgtga ttgggtttgt tcgtttattt ccttctctgc
      781 tcattattcc agtttccaca attgtcaacc atgatcagca atcttgacga ccaaatcttc
      841 tcaatcctac tatcaactgg ctcctgattt gacaaaatgc agaataggac tatttttatg
      901 tgttaaagtc gatatatcta tatgatgtca tcagaaagtg atgatgaaac attagatagg
      961 ggagatatag ctcaacaaga acaggaaaga acaatgaaag aagctgaacg acctaataaa
     1021 gaaaagcaga ccgaaaggcg agatgccaaa gataggggag aagctgcaaa gcaagaacag
     1081 gaaagaataa gatgacggag taattttgtg ttattaatct attggtggat tgatcggtat
     1141 gttgtaaagg ttaaccctgg ctgaccattg cgaatgactt ttagaacatt tttgtctttt
     1201 gaaaggtaac acaaaatatt gtacagggct gaattcccaa gccattgact acaaaaagac
     1261 aatggcaaga tatgaactgc agaatataaa taatccgatt gcaattctaa atagagatat
     1321 ctataacaaa aggaacgagg tagcatattt acgctttgaa gtccaggagt tagaagagta
     1381 tctccgtgga cccaagaatc atatccaaca acaaccaatc tcctaataat aaaaaaggta
     1441 accaggctta cagattattt tctaatgaaa aaagccattg gagtagcaat caaatcacac
     1501 tttgggaaaa gttagtagat atatttgcaa tatatcaaag atttcctgta gcgagagaga
     1561 agcaaatcat attttagccc gcagagcact agcgagctaa atcatatcat ctatgtattt
     1621 ctgcaagaga tgaaacgcaa attagaagtt gaatgcatca gtcccggaga tctctttcaa
     1681 acatgacaat aacattttat aagtgtggat gttgggttca aacagaacaa caaccttctt
     1741 atacagaact tgtgtttgtg aagttcctga agagactaag gcttccccat cctcgtagcc
     1801 gtcatcggat tattgttgat tcgtacctgt gtattaaaca tgaattagaa caaaaggaag
     1861 aagcaatgaa ggaatgggaa gagaggatgt ctgaggaata atggcataat taataatgcg
     1921 tcatatgaaa cctgtatcgt agcattttaa cccggtgaat tagattatat cggctatcta
     1981 ttacttcaag agatgaagtg caaactagac gtagagtaca tgtctttaga gagcaaagct
     2041 aaggacacct ccaatagcta ctactgactt tctatatctt agatttatta ttggtgatag
     2101 aactatagac gagaagagct ttggaaagat acaaaaa
//
LOCUS       DASQSJ010000052         3291 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_124739, whole genome shotgun sequence.
ACCESSION   DASQSJ010000052 DASQSJ010000000
VERSION     DASQSJ010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124739"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VE223_01110"
     CDS             complement(<1..406)
                     /locus_tag="VE223_01110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20221.1"
                     /translation="MVIEGEVQKELSQKEEIFFSDKSQSYCVCFVSMVDSTETTFTFN
                     DQPDKIRRFYSIFINTLAAMIRNFDAKVIKNTGTSLIYYFPKTSGSHDNLPAFKDVIE
                     CGISMIAADKVINMKLKEEGLPPMHYKISADYG"
     gene            complement(1434..>3291)
                     /locus_tag="VE223_01115"
     CDS             complement(1434..>3291)
                     /locus_tag="VE223_01115"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HZC20222.1"
                     /translation="VSAIGNPFGIQNLMTDGIISGLNMLLPNNQTGFPIPDVIATDVP
                     LNPGSSGGPLFDTKGEVIGINTAIAYAGRIPALSYSISSNIIKKIMPELIAHGKYIHP
                     WLGVNTAALSPNLQYGTTTTTPSSMNYKGGGAVITSLQPGSPAAKAKLQSTITGKHIG
                     DIIIAIDGHPVNRSEDVINYIESTKSVDDTVTLKLIRNGTTSQNVNIKLLARPNVISF
                     NAAENKKTITTIPNLSTLSIKNWRKIIGLSNSNISSQGPRIAVSGNNVYVVWEESVHS
                     SNNKIMFAKSTDRGDTFSKPVNLTLGVITDSETPSIAAFHNNVYIVWADSSPENFDIF
                     FVKSTNGGNSFTKPMNLSNDPGISYQPRIATDGNNGVYVLWTDNSLGNYNILFTKNID
                     GGTAFSMPLVLSNDLKGVSNFPSIAVSHNNNVYVVWSHKNNTDFDPSNTNNQTQTYDI
                     FLTKSIDRGNTFSKPINLSNDPSNSQNPAVAISINNNVYVVWTDNSIGTYETFLTKSK
                     DRGNTFSKVTVVSSNVARSTSPSVSTYGSNLYVVWSDNAFGNSEIFYTQSTDNGSTFN
                     MPININNDTGISDLAQITTDPDDDGSNNIYLVWQDNITGNIVIYFTKAVHSN"
BASE COUNT          967 a          588 c          568 g         1168 t
ORIGIN      
        1 taccatagtc tgcactaatc ttataatgca taggaggtaa gccttcctct tttaacttca
       61 tattaataac tttgtctgct gcaatcattg aaattccgca ttctattaca tctttaaaag
      121 ctggtagatt gtcgtgagaa ccagatgttt taggaaagta atatatcaaa ctcgtaccag
      181 tatttttgat aacctttgca tcaaagtttc taatcattgc agccaatgta ttaataaata
      241 tagagtaaaa tctcctaatt ttgtctggtt ggtcattaaa agtgaaggtg gtttcagtag
      301 aatctaccat actaacaaag catacacagt agctttgtga tttatcagag aaaaatattt
      361 cttctttttg tgataattcc ttttgtactt ctccttctat caccaagaca aaatcggttt
      421 tatattgctg ctttttttac ttttgtaggc tatattttta ataaattaaa tgtaattatg
      481 atttattata atgctgtaga atatcaacca tcatagtcct agtcgctcgc aaccagtggc
      541 aatatcttta cctctactct atgcaatgca agttataccc ttttattctg aaagtctact
      601 ccaaaacctt taaacagaat gaaatataac tctatatagc tcaaactatg cattttagac
      661 attttaatgt ctaagattaa cagatcatac aacccccttt gtgaagctgt gtgattccac
      721 atggtaaact ttagacattg ctcgtcatta tttgtaatag tgacttgatg gcaccttctt
      781 ctaattctct cctgtgtgtt attgcagtat ctttatcatc ttcgcgtaac aatattttga
      841 tatctatgtt acttagctgc cagctcctgc agtccaggat ccagattatg tgggttgtta
      901 atattaaata acaatgtaaa gagccaggta caggagttat ggcaatatgt gttgacgttt
      961 ttaggcatag ctgcatgcca gctcctataa ggagcattcc taacaaagga tatctcatta
     1021 tttattgcat tcaagttaaa aaatagcatt tggcaatcat ttccatagtt ttaattattg
     1081 ctatatccta cggacttgta atcgcagaca aaacatttca tacaggatgg actacctagg
     1141 aatatctaaa atttggttta gctcttaata ttgcacacgc atttgtagaa attacttctc
     1201 tttcgcctgg gtagcaggtt tcagctgtga acttgaacaa gagatgcatg tccattgatg
     1261 aattagctaa ttacaaagga tctataagct attattacaa agcatcgaag ataaattcta
     1321 atgaccgttt tgcagtaagc taattctcta aacctaaaca tgacggtgtt atcagttatt
     1381 gtgaattctg attttctctc aaacatctta tctagtatgt atcgataggt caactagttg
     1441 gagtgaacag cttttgtaaa atatatcaca atatttccag taatattgtc ttgccaaact
     1501 agatagatat tattactacc atcatcgtcc ggatcagtag ttatttgtgc aaggtctgaa
     1561 atccctgtat cgttattgat attaattggc atattgaaag tagatccatt atctgtactt
     1621 tgtgtataga atatctcaga atttccaaat gcattatcac tccaaacaac atagaggtta
     1681 cttccataag tggatacgga tggagaggtg gatctagcca cattgctgct taccacagtt
     1741 actttactaa atgtatttcc gcgatcttta ctctttgtaa ggaatgtctc ataagttccg
     1801 atagaattat ctgtccacac cacatataca ttgttattta tagatatggc taccgcagga
     1861 ttttgggagt ttgaaggatc attgctgaga tttattggct tactaaatgt atttccgcga
     1921 tctatactct ttgtaaggaa tatgtcatat gtttgagttt gattgttggt atttgatgga
     1981 tcaaaatctg tgttattttt gtgagaccac accacatata cattgttatt atgagatacg
     2041 gctatgctag gaaaattaga cacaccctta aggtcattgc tgagtacaag cggcatactg
     2101 aaggcagtac caccatcaat gttctttgta aagagtatat tgtaatttcc aagagaattg
     2161 tctgtccata atacatagac accattattt ccatctgttg ctatccttgg ttggtatgaa
     2221 atgccaggat cattgcttaa attcatgggc ttggtaaaac tatttccgcc atttgtactc
     2281 tttacgaaaa aaatatcaaa attttccgga gaactatctg cccagactat atacacgtta
     2341 ttgtgaaatg cagctatgct tggagtttct gaatctgtta taacacccag agttaaattt
     2401 actggcttac taaaagtatc tcctcgatct gtgctctttg caaacattat tttattgtta
     2461 ctactatgga cactttcctc ccatactacg tacacattat ttcctgatac ggctattctg
     2521 ggaccttgtg atgatatgtt gctattactt aaaccaatta tctttctcca attctttatt
     2581 gataatgtac tcaagttggg tattgttgtt attgtctttt tgttctctgc tgcattgaaa
     2641 gaaatgacat ttggtcttgc taaaagtttg atattaacat tctgagaagt tgttccattt
     2701 ctaatcaatt taagagtaac agtatcgtct actgatttgg tggattctat gtaattaata
     2761 acatcttcag aacggttgac aggatgccca tcaattgcga ttattatatc acctatgtgt
     2821 ttacctgtga tagttgattg aagcttggct ttggccgcag gactaccagg ctgaagtgat
     2881 gttatgactg ctcctcctcc tttataattc atcgatgatg gtgttgtcgt tgttgtacca
     2941 tactgtaaat tgggactgag agcggctgta tttactccaa gccaaggatg aatgtatttg
     3001 ccatgtgcta ttagttctgg cataatcttc tttattatat ttgaagatat tgagtacgat
     3061 aacgctggaa ttcgaccagc atatgctata gcagtattta ttccaattac ttctccttta
     3121 gtatcaaata aaggcccacc agaactaccc gggttaagtg ggacatctgt cgctataaca
     3181 tccgggattg gaaaaccagt ttgattgttt ggaagcagca tgttgagacc actaattata
     3241 ccatcagtca tcaggttttg gataccaaag ggatttccaa tagcggatac t
//
LOCUS       DASQSJ010000053         2439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_443534, whole genome shotgun sequence.
ACCESSION   DASQSJ010000053 DASQSJ010000000
VERSION     DASQSJ010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443534"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VE223_01120"
     CDS             <1..326
                     /locus_tag="VE223_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20223.1"
                     /translation="NNSFRIVKLSFQKKVIKRMNTMFGNSSSYSCINCGTRHNEISNG
                     FLHMIQISILIMTYHLDQNRSPRKKAHTTSYTRSSKSRTGDSPFSTKTLKVRYFTHIQ
                     LTHAA"
     gene            complement(747..1172)
                     /locus_tag="VE223_01125"
     CDS             complement(747..1172)
                     /locus_tag="VE223_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20224.1"
                     /translation="MGLCRRNIAGLWYLKDKVSDRKYRNSFRIYFLSVPFLGGLFGAI
                     IYFIVVAGLFIIAPTQAVPILNNQTVSAPNSTTTGAANQHNAPQPSIAKTTGAQVSTL
                     AIIPLATLAGFNWEWAVMIFKRIGDSFKAESEPEEKIEK"
     gene            complement(1130..1687)
                     /locus_tag="VE223_01130"
     CDS             complement(1130..1687)
                     /locus_tag="VE223_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20225.1"
                     /translation="MAVGSDKAAADKAAQEPSKLPADEAERRRKVLLSEINRIDNRAN
                     AAADNGLFNKLEKDREKNRRKKEEKQKVEEDDLFQEIQDKLRRARNELYSGNFADSEY
                     YTSLALRAYDKALYYTSRLWRFSNIHAGPMWIYLIGFLVAVLAFYWNQLDRNVLNLQP
                     VKIQEAALHAATWGCVGGILRAYGT"
     gene            1957..2436
                     /locus_tag="VE223_01135"
     CDS             1957..2436
                     /locus_tag="VE223_01135"
                     /inference="COORDINATES: protein motif:HMM:NF021385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HZC20226.1"
                     /translation="MNISNVISEKISGIDWHRITEIINERGYALVLQFLPAQYCEELI
                     HEYDNSHLYRKTITMERHGFGLGEYKYFKYPLPDLIQTIRTEIYPKLAPVANTWMKVL
                     NIERQFPNNFDELQRLCHENNQTKPTVLILKYGKGGHNTLHQDLYGDIFSLFNWLYS"
BASE COUNT          766 a          489 c          431 g          753 t
ORIGIN      
        1 acaataacag ctttcgtatt gttaaacttt catttcagaa aaaagtcatt aaaagaatga
       61 atacaatgtt tggtaattca agcagttact cttgtattaa ctgcggaaca agacataatg
      121 aaatttcaaa tgggtttctt catatgatac agatttcaat tttgattatg acatatcatt
      181 tagatcagaa tagatcgcca agaaaaaagg cacatacaac ttcatataca agatcctcaa
      241 agtccagaac aggagattca ccattttcta cgaagaccct gaaggtcaga tatttcacac
      301 atattcagct tacgcacgcg gcatagacat gttgaacgtg gcatatcact atcttgacct
      361 agttcccaag ggactagacg aggctgataa tgaattcccc caattttggg tacgccccca
      421 cgatgaatac ttcaagaaac gttaatggta tgtcagctgt ttgacaagct acaagttaaa
      481 ctatttacgt ctgttataag gtgataaagg cgatgtcttg ctattatgat gaggaggata
      541 tggctatcaa aacacagcca tctatgaagg aggcgctaag gtccttgata ttgcaaaaac
      601 actgacattg gatgctatat cctgatcacc tatgacagat ctacattata ataagattaa
      661 catggtctag aagaattgat ttgtctgtga acctgcgatt tcatataaaa tcttcaatta
      721 tgtaaattac attgtatatc tgatatctat ttttctattt tctcttctgg ttcactttca
      781 gctttgaagg agtcgcctat tctcttaaat atcattacag cccattccca attgaaacct
      841 gctaaagtag cgagaggaat tatcgctaga gttgagactt gtgctcctgt ggttttagca
      901 atagatggtt gtggagcatt atgttgattg gcagctcctg ttgttgtaga atttggggct
      961 gatacagtct gattgttcag tataggtact gcctgagttg gtgcaataat gaacagaccg
     1021 gccacaacta taaaataaat tattgctcca aagaggcccc ctagaaaggg aacacttaaa
     1081 aaataaattc tgaaagagtt tctgtatttt ctgtcgctga ccttatcctt taggtaccat
     1141 aggcccgcaa tattccgcct acacagcccc atgtcgccgc atgaagtgca gcctcctgaa
     1201 ttttcactgg ttgaagattt aacacattcc tatctaactg attccagtaa aacgctaaca
     1261 cagctacaag aaagcctatt aagtagatcc acattggacc agcatgtata ttcgaaaacc
     1321 tccacagtct acttgtataa tatagagcct tatcataggc ccgtaaagct aacgatgtat
     1381 aatattcgga atctgcaaaa ttaccagagt ataactcatt tcttgcacgt cttaatttat
     1441 cttgaatctc ctgaaaaaga tcgtcctctt caactttttg cttctcttcc ttttttctcc
     1501 tattcttttc cctatctttc tctagcttat tgaataagcc attatcagct gcagcatttg
     1561 ctcgattgtc tatacggtta atttcactca acaatacttt ccttcgccgt tccgcttcat
     1621 cagcaggtag ttttgatggt tcttgagctg ctttgtcagc tgctgctttg tcagagccta
     1681 cagccattgc caaatctgag gaatagttct atttaaggtc catgaaacaa gattctaata
     1741 ttgacaacca tgtcggttca ggtccaaaga aaatctccat atctcttaaa tagtcaaaaa
     1801 gaaagtcaat cttaacttct gcgggcgttt gcttgtctca acagtatacc cttcgtatcc
     1861 caaggattct acatgtataa agtgcctaaa atccagccaa aaagttaaac atgcaagagt
     1921 ctatcctcaa accatcgaga ttggggttag aaactgttga atattagtaa cgttatatcg
     1981 gaaaagattt ctggcattga ctggcacagg attacagaaa taattaatga aagaggatat
     2041 gctttggtat tacaattcct gccagctcaa tattgcgaag aacttatcca cgaatatgac
     2101 aactctcatc tctatcgcaa gaccattacg atggaaaggc atggtttcgg attaggcgaa
     2161 tataaatatt tcaaataccc tttaccggat ctaattcaga ctatcagaac agagatttat
     2221 ccaaaacttg caccggttgc aaatacatgg atgaaggtgt taaacataga aagacaattt
     2281 ccgaataact ttgatgaact tcaaaggctt tgccatgaaa ataatcaaac aaagcccacc
     2341 gttcttattt taaaatatgg taagggaggg cacaatacat tacaccagga tttgtatgga
     2401 gatatttttt ccctattcaa ttggctttat tcctgaacg
//
LOCUS       DASQSJ010000054         2232 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_85772, whole genome shotgun sequence.
ACCESSION   DASQSJ010000054 DASQSJ010000000
VERSION     DASQSJ010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85772"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(556..1698)
                     /gene="mtnA"
                     /locus_tag="VE223_01140"
     CDS             complement(556..1698)
                     /gene="mtnA"
                     /locus_tag="VE223_01140"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HZC20227.1"
                     /translation="MSRCNNIHNNANNTLDLLLTVAWKNESVVMIDQTKLPNKLRYIK
                     CKDYKEVANAIKNLTVRGAPAIGVAAALGLALAATHSEAKNLSQLLDDIDVAFKVLQS
                     TRPTAINLFWALSRIREKAKGKESVYEVKKAILNEALKMAEEDIETNKQIGRNGAVLF
                     EKGDVIMTHCNAGSLATTAYGTALGVIRAANEGGKCVSVIATETRPVMQGSRLTAFEL
                     HHDGIDVKLIPDTAVAYMMSKGAIKRVIVGADRILRSGHVFNKIGTYQVAIMANLHKI
                     PFYVAAPFSTFDFKNNLEDIVIEERSGEEVTKMGKKRIAPKGVQAFNPAFDVTPPEWI
                     TAIITEKGIVKPPFDNLYQTLKSWGYVEPQYDMLCSSGTTPKRSTS"
BASE COUNT          688 a          433 c          391 g          720 t
ORIGIN      
        1 attgtccttt gtgtaaccac ccagctactt taaaaccaac caaaacccat catttgtgtt
       61 aagatgtgat tattgcaaag gactagcctt tgctaatggc ccaatatcag cataggtgta
      121 tgtagctgcc agactacaat caaggggaac tttatccgtt atgaataaaa tagatcactt
      181 tttatgaata agttatgata cggcttatcg tcatcatgtt tcttaaggta ccagaaatca
      241 ttgcgtaatc cacctaattg ttctgaaagc taggtctgtt aactcccttc tagaagggtc
      301 catttaatat tgagaaaata aatggtatct aattcctatg ctttgccaaa gttatttgtg
      361 cctgtaccaa atagactcag actgcatgca tttattatta gagatcgcca tgatgcgtaa
      421 aatgagtttc atgcttcaat gatcaaatgg ttaatgaagt aaaaattaag ttgaaggaat
      481 ctattataga aggattagaa tgattgggta gtagccggcg acttacgcgt taataaagtt
      541 cgggtacttg cggccctagc tagttgacct cttgggcgta gttccacttg aacatagcat
      601 atcgtattgt ggttctacat agccccaact ctttaaagtt tgataaagat tatcaaatgg
      661 cggtttgaca atgcctttct ccgttatgat ggcagtaatc cattcagggg gagtcacgtc
      721 aaatgcaggg ttgaatgcct gaacgccctt tggagcaatt cttttctttc ccatctttgt
      781 gacttcttct cccgaacgtt cctcaattac aatatcctct aggttatttt tgaaatcaaa
      841 tgtagaaaat ggtgctgcta catagaatgg aattttatgt aaatttgcca taattgcgac
      901 ctggtaggtt ccaatcttat tgaaaacatg accggaacgc aaaattctgt ctgcaccaac
      961 tattacacgc tttattgctc cttttgacat catatatgca acagccgtat cggggatcag
     1021 ctttacatct ataccatcat ggtgtaattc aaacgcagtc aatcttgatc cttgcattac
     1081 tggacgcgtt tccgttgcga taacgctcac gcatttaccg ccttcattgg ctgctcgtat
     1141 cactcctaat gctgtaccat atgcggttgt tgctaatgac ccggcattac agtgtgtcat
     1201 aattacatct cctttttcaa atagtacagc accatttcta ccaatttgtt tattagtttc
     1261 aatatcttct tcggccattt ttagagcctc attaagaatt gcttttttta cttcgtagac
     1321 actttccttt cccttagcct tctctcttat ccgtgataaa gcccaaaata gattgatcgc
     1381 agtaggacgt gtagattgta aaactttgaa agccacatca atatcatcta gtaattgact
     1441 tagatttttt gcttcactat gagtagcagc gagcgcaaga cctagagcag cagcaacacc
     1501 tattgcggga gcacccctta cagtcagatt ttttattgca tttgcgactt ctttgtaatc
     1561 tttacactta atatatctga gcttatttgg taatttggtt tgatcaatca ttacaactga
     1621 ctcatttttc caggccaccg ttaacaaaag atctagagta ttattagcat tattatgaat
     1681 attattacac cttgacattc aacatgaaaa attcattttg gactataata aatttaacta
     1741 gcaaatcata tagcaaattt acaattttag atacaagtag acatggcaag atacaataca
     1801 atacacatcc tcttacaaag ttaacccaga gttgatgctc gcaaagaccg tggtttcaca
     1861 catatattct ccagcttttt acaacaatga agaattatta tcctaatgtt ttgggagatc
     1921 aatttgctgg agacaaaatg gaagacattt ttactagggc ataaaaaagt atacttttga
     1981 tttcaatctt acgagtcgga taataacaaa taactcaaaa agaggttgtc aggttgacaa
     2041 aatttcatgc aagcaacaaa aacgacttgc gacggcaatt agaactgtaa caatattaaa
     2101 ggctagatag gtggggcaga agagatgatt gttaaggcat cgagaatgtt ttaaaactag
     2161 aatacaaata ccttacaaat ccctgctaat gtctttgtca aataaagtaa agtattagcc
     2221 tataacatag gc
//
LOCUS       DASQSJ010000055         7834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_165120, whole genome shotgun sequence.
ACCESSION   DASQSJ010000055 DASQSJ010000000
VERSION     DASQSJ010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7834
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165120"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VE223_01145"
     CDS             complement(<1..258)
                     /locus_tag="VE223_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HZC20228.1"
                     /translation="MLTEQPMTGKEIIRKAIVQSHGKWRPSPGLIYPMLGRLLEEELI
                     SELDNGRYKITSKGLDMAANVESIHSVFQKQMDLISRIGNVG"
     gene            597..1085
                     /locus_tag="VE223_01150"
     CDS             597..1085
                     /locus_tag="VE223_01150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20229.1"
                     /translation="MSSKETASDGTEDKIITEDKELKTQTTAEGSINSDKEDEQAKVA
                     EGQELQVLPENEAEEKEEILLTTAGSETTKPKVPSLSSKRKSSPKRAQPTEMNLTGVS
                     KQLDKQTMQINKIRLMLQSIQTRTKTIERQPELIKQLQSQIKQIQKHVSQIQKNIRTK
                     KR"
     gene            complement(1420..1929)
                     /locus_tag="VE223_01155"
     CDS             complement(1420..1929)
                     /locus_tag="VE223_01155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20230.1"
                     /translation="MIITRDLMERYIIPHGYEKPRIEIGNYYLKWNDKSYGISQKEIS
                     DLKGFLRNVLQYFDIIYELLNNLELSREKEKRHLQKELSPHIHFSHSNKDHMLSYDLY
                     MASDGSTFIDRTERFEITNKDESETSKSTNVQQMRYNNSEFYLKWNLGELLFNRQDVV
                     RIKKLKKTN"
     gene            complement(2072..2605)
                     /locus_tag="VE223_01160"
     CDS             complement(2072..2605)
                     /locus_tag="VE223_01160"
                     /inference="COORDINATES: protein motif:HMM:NF025865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HZC20231.1"
                     /translation="MVVVEDMDAFECIRTKLEVREFSTRDVPSEIRLKVLEAARLTGT
                     GLNTQHWRFILVDNKQNLKKLAEDSTSGNWVAGANFAIIVLTNPKYNFHLIDAGRVLQ
                     NMQLAAWNNDVGSGLFTGVREEKFRSDFGIPNELSPTVIVGFGYPAIELTGKRKNRLP
                     LNKLVYYEKYGNSKIWE"
     gene            complement(3767..4330)
                     /locus_tag="VE223_01165"
     CDS             complement(3767..4330)
                     /locus_tag="VE223_01165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20232.1"
                     /translation="MRRHIERKHNRLGQPVDLLKLNEYQYRSRRNGILSEEQIPMQSG
                     GFSTSSIPPIYYHHQLYPYSNYKIRRQNQEKTAFSTDSTERIFLQPLRMVREFKQLLD
                     DIFPIQHHQQQYSSYFTPGWTWQYYPRVNGNSSNNNWSGLKRIVDSNPEGKDKLHDLK
                     LRGGEMLIDILHNNKNKINSAACGGDY"
     gene            4758..7499
                     /gene="alaS"
                     /locus_tag="VE223_01170"
     CDS             4758..7499
                     /gene="alaS"
                     /locus_tag="VE223_01170"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HZC20233.1"
                     /translation="MGKKELTNLFSSDPNRYYKVSLFDRMGFKRQRCTGCGRFFWTLV
                     ERTFCPDHENYSFIGKPPTNKRLDYVNAWKETEEYFQFNGHSIIRRYPVVCRWRDDLY
                     FTIASIVDFQRVMGNKVVFELPANPLLVPQMCLRFNDIENVGLSGRHYTSFCMVGQTS
                     NADAPGGYWKDKCIELDYGLLTNGLGINPEEITFVEDVWMGAGAFGYSLEYFVCGLEL
                     GNAVFTEFEGNENNYRVMANKIIDMGAGLERFSWITMGTPTSYDCSFGPAIGKLVDAT
                     GTFGNQDILTKYFGAVSSKLDAMAGDIKALKSLIAKELKVSDEQLAKMIAPYEAIYTI
                     ADHTRTLLFSISDGALPSNVGGGYNLRVILRRALSIMERMGWIIKLEDIADMHIDYLK
                     QMYPELDEHREDVRTILQIESSRYIGSRERMNAIATSIKSSKTKVMVDDLIRMYESDG
                     ITPDFLVEAGAIENIPSTFYTKLAELHTHQIATQVQKSVYGLDGLLPTTLLYYEDQST
                     REFTSKTLKVIENKYVILDQTAFYPRGGGQEPDLGEIDGVRVVDVIKQGDIVVHKLQD
                     ARGFVEGKVVHGIVNDRRRDLITKHHTATHVLNTSARINLGSWVWQNSAFKEEKYARL
                     DITHHSALNREEVERIEKTANNVIRQDLPVTIKIYGRGDAEQKYTFRIYQGGVVPTSN
                     TRIVNIEGWDIEACGGTHVNKTGEIGLIKITKAERIQDGIVRLDFVAGEAAINYMQKQ
                     ENQLTAIAQSLGSSKEKVVESSQKSIDELEATRRKIKTVLRKVAPIMAKSISLEAKQL
                     SSDGTKFYTVYDDELDDEYCIAIGEKSIEIDPSLIYIALISKGHGMRVVVFVGKKARQ
                     KIKAGIIAKQISTQLGGSGGGDDRFGQGGAGSNERSKDKIEEALLSAEELVMKNIAG"
     gene            7499..>7834
                     /locus_tag="VE223_01175"
     CDS             7499..>7834
                     /locus_tag="VE223_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HZC20234.1"
                     /translation="MKSMTSSTTIPPSRSSNNNSDRVTKTIDWNSIEEKWRQRWDEQK
                     IFQTDPHFGKKKYFITVAYPYPNSPQHIGHGRTYTLADTHARYMRMKGYNVLFPMGFH
                     YTGTPILGMS"
BASE COUNT         2619 a         1346 c         1496 g         2373 t
ORIGIN      
        1 tcccacattg cctattctag atattagatc catttgtttt tgaaatacac tatgaataga
       61 ttctacattt gcagccatat ccaatccctt tgatgtaatt ttataccgac cattatccag
      121 ttcacttatt agctcttctt cgagcaatct accaagcatt ggatagataa gccctgggga
      181 aggcctccat ttaccatggc tctgtacaat agctttacga ataatttctt tgcctgtcat
      241 tggctgctca gttagcaaat ctaatatata gcgtctggag aatcctcttg gaattgaact
      301 tcctactcta gatagccaat atgatatcat ttatgtatca ctagtaatat cactagtgac
      361 ttatgtacct gagtacaaaa ttgagatact taatgataat tagcagaagg acttcaggca
      421 agtaagcata ttctcatcat cttgtgtata tccggtcaaa caggtgcgat cgaaacgaag
      481 acgtaaaata gtaattggaa gaaaacagca gtggagattt tggacagagg aaattattga
      541 tgttcatccc ttaacagaaa aatctataaa aatgatcttt ataacctaag taataaatgt
      601 catcaaaaga gacagcatcg gatggaacag aagataaaat aataacagag gataaagaat
      661 tgaaaacgca aacaacagca gaagggagca taaattcaga taaagaagac gagcaagcaa
      721 aggtagcaga agggcaagaa ttgcaggttc tcccggagaa tgaagcagaa gaaaaggagg
      781 aaatactact aactactgct ggctctgaaa cgacaaaacc taaagtgccc tcactgtcat
      841 caaaaagaaa atcgtcacct aaaagagccc aaccaacgga aatgaattta acaggtgtat
      901 ccaagcagct agacaaacaa actatgcaaa tcaacaaaat aagactaatg cttcaatcca
      961 tacaaacgcg aactaaaacc atagaaaggc agccagaatt aataaagcaa cttcagtcac
     1021 aaataaagca gatacaaaaa catgtatcac agattcagaa aaacataaga acaaagaaaa
     1081 gatagcagca gcaatattcg aagagaatga acgtttgtta tgtagtcatt aaagtaaaca
     1141 aaataatgga aagaaagatg cagtaataat aatctttatt tatctctatc tgttcttcat
     1201 tccaatgttt gaaatctctt agactttaga tcatcatcta tgacaagaat tcttttttgt
     1261 gatgttttct gctttacata gttttgtctg cgattaaaat tatgttccag attaaccatg
     1321 tccttttgcg actgctatta ttatatgtga cggaagattt gtctttatgg atgttgggca
     1381 actgataatg cctactacaa tagcaataat aaataggatt taattggtct ttttcaactt
     1441 tttaattcta acaacatctt gtctattaaa taacaattca cctagattcc actttaaata
     1501 aaattctgaa ttgttgtaac gcatttgttg tacatttgtg ctttttgaag tctcactttc
     1561 atctttattt gtaatttcaa acctttctgt tcgatcaatg aatgtagagc catccgatgc
     1621 catgtataag tcatagctaa gcatatgatc tttattgcta tgtgaaaaat gtatgtgtgg
     1681 agataattcc ttctgcagat gacgtttttc cttctctctt gatagctcta agttgtttag
     1741 taattcataa attatatcaa aatattgaag aacatttctt agaaatccct tcaggtcgga
     1801 tatctctttt tgagatattc cataagattt gtcgttccat tttagatagt aattgccaat
     1861 ttctattctt ggtttttcat agccatgagg tataatatat cgttccatta aatcacgtgt
     1921 gattatcatg aagtttgtaa atgctctcga ataaataaaa tcgattagaa ttaagtagtt
     1981 tacctattga ttaggaggtt aaatttagac acattatctt tccttctgaa ggctgtaatg
     2041 ctcaacctat tttaaaagag taaataatat gctattccca tatcttagaa ttgccatatt
     2101 tttcatagta aactagttta ttgagaggca aacggttctt tctcttacct gtcaactcta
     2161 tagcaggata tccaaaacct actatgaccg tagggctcag ctcatttggg attccaaagt
     2221 cactccgaaa tttttcttcc cttactcctg taaacagccc tgaacccacg tcgttattcc
     2281 atgctgctag ctgcatattc tgcagcaccc ttccggcatc aatcaaatga aaattatact
     2341 ttgggtttgt caggactatt atcgcaaaat tggcaccagc aacccagttt ccacttgtac
     2401 tatcttctgc taactttttg agattctgtt tattgtcaac tagaataaat cgccagtgtt
     2461 gtgtgttaag accagtgcct gtcagtcttg cggcctcaag aacctttaac ctaatttcag
     2521 acggaacatc cctagtactg aattctctta cttcaagctt cgttcttata cactcaaaag
     2581 cgtccatgtc ctctactact accaacctgg ttgcatgcca agtatcttaa agcttttcta
     2641 aactatgctt tttttgtaaa gatatgaaac aaaatgagag tatagatagt ggtgtataag
     2701 atatgagttc agaagacgat tttattaaat ctataaacga tatggcagct tcaatacaag
     2761 ggacataaag aatccatttt acgtatttac aaggttaagt aatagatcct aactctgaag
     2821 cccgttattg aacatgcagt atacggtagc tttgaaagta tttcccaatt atacaaatac
     2881 atgtcattta atacaagaat gatttatgac ctaagcgatg ccattaagac tcccagactg
     2941 gaaagaattt gatgaggtaa agtatattgt taacaagtca ataagaatca cgaataagat
     3001 cgacagtttg tgcaaaatgc aaaacaatac tatcagatct ctcaaaagat gtagaagcat
     3061 caggtgataa cctatgaatg ggattgagat tggtactaga tattgagatc gtgggaaaac
     3121 tcaagcgcat gaaaaaaact caatcgagct ttatgacctt tttttcgatg ctttggatat
     3181 attatagaat attcaaagaa atatggtgtc tcgatgccca aaagagaaga gataaaacga
     3241 atgaccgaga gagttcactt tattatggat caaatagaac caccaatgga ataccaataa
     3301 cgggataaaa cagctagaga ggtaacagaa cctggtttct tcttgttgct gaagcaaata
     3361 tacaaaagat attgcaaagt ttcctataac caaattgaat tataaataat agctatatag
     3421 ccatcttatg gctgaatgga atataatagg gatgagtagt gttattactt cacgtatgta
     3481 ttagctgatg aatacaagta tataatgtac tagggaatgt cggaattcag ctagactttt
     3541 atgttactct tattttactg ataattttaa tgcatactgg ttatcgtcac cattctatgt
     3601 attaggatta agatgaattt gtttcttttt aacttgagca tcctaacgta cacttcaaat
     3661 aacattgaat gtggtaagaa cgctaaattg ctcaccaaaa tatgattatt aggaattggg
     3721 ataagttact tttaggggat tgctgttttt tagattacaa aatagcttaa taatctcctc
     3781 cgcaagcagc tgaatttatt ttgtttttgt tattgtgaag aatgtcaata agcatctctc
     3841 ctcctctgag tttaaggtcg tgcagtttat cttttccctc gggattagaa tcaactattc
     3901 gttttaaacc cgaccaattg ttgttactgc tgtttccatt aacacgggga taatattgcc
     3961 atgtccatcc aggagtgaaa taagaagagt actgttgttg atgatgctga attggaaaaa
     4021 tgtcatcaag taattgttta aattctcgta ccatcctaag aggttgcaag aagattcttt
     4081 ctgtggaatc tgttgaaaat gctgttttct cttggttttg tcttcgaatt ttataattag
     4141 aatatgggta tagttggtga tgatagtaaa taggaggaat agaggatgtt gaaaaaccac
     4201 ctgattgcat aggaatctgc tcttcactta atatgccatt tcttctactt cgatattgat
     4261 attcatttag tttcaacagg tctacaggtt ggcctaatct attgtgtttt cgttctatat
     4321 ggcgcctcat attccagttt cggctacttg tttgttcgca aattggacat ccccattttc
     4381 ttaccattat ggactgtcct cctcttcatt acttaggcca attccttcct tgtcgctccg
     4441 gagcgactcc ggagttactg cagttgctcc aagagcatat ttagttaata cagtcaacta
     4501 tgacatcgta ttaacaaaag gtgtataaaa acaaagacca gtagttaccg taattacggt
     4561 catttcacat atctcttttt tctggttgta gataatgatt tgtagcgttc tgatataccg
     4621 atatacatgt caatgcaaag gtacattctg tagatgctac catgtcacgc cattaagacc
     4681 gttcatccgt tattgaagtt atcaaaagga tgatataagt cactattatt tacccctatt
     4741 aacagggata gcaagcattg gggaaaaagg aacttactaa tcttttttca tctgatccaa
     4801 acagatatta taaagtttct ttattcgaca gaatgggttt taagcgtcag aggtgcacag
     4861 gatgtggaag attcttttgg accctggttg aaaggacgtt ttgtcctgat catgaaaatt
     4921 atagttttat aggtaaacct cctacaaata agcgacttga ctacgttaat gcttggaaag
     4981 aaacagaaga gtattttcaa tttaatggtc actcaataat taggcggtat cccgtagttt
     5041 gcagatggcg tgatgaccta tatttcacaa tagcatcaat tgtagatttt caaagagtaa
     5101 tgggaaacaa ggtagttttt gagctacctg caaatccact tcttgttcca caaatgtgtt
     5161 tacgcttcaa cgacattgaa aacgtaggct tgagcggcag acattataca agtttctgta
     5221 tggttgggca gacatctaat gcagatgctc caggaggtta ctggaaagac aaatgtattg
     5281 agctagatta tgggttactt acaaatgggc ttggaataaa tccagaggaa atcacttttg
     5341 tagaagatgt ctggatgggt gcaggcgcat ttggatactc tttagaatat tttgtgtgcg
     5401 gacttgaatt aggcaatgct gtttttaccg aatttgaagg aaatgaaaat aactatcgtg
     5461 tgatggctaa caaaattatc gatatgggtg caggacttga gagattttca tggattacaa
     5521 tgggaacacc cacaagttat gattgctctt ttggccctgc aataggaaaa cttgttgacg
     5581 ctaccggaac ctttgggaac caagatattt taaccaaata ctttggggca gtgtcaagta
     5641 aacttgatgc catggctggc gacataaaag cactaaaatc attaatcgct aaagaattaa
     5701 aagtatcaga tgaacagctt gcaaaaatga ttgctcctta tgaagcaatt tacactattg
     5761 cggatcatac tcgtacgtta ttattttcta tttcagatgg ggctctgcct tcaaatgtag
     5821 gtggggggta caatcttaga gtaatcctaa gaagagcact ttcaattatg gaaaggatgg
     5881 gctggatcat aaaacttgaa gatattgctg atatgcatat tgattatctg aagcaaatgt
     5941 atccagaact tgatgaacat agagaagatg tccgaacgat cttgcagata gaatccagta
     6001 ggtatatagg ttctagagaa aggatgaatg caattgccac ttctatcaaa agcagtaaaa
     6061 cgaaagtaat ggtagatgat ctcatcagga tgtatgaatc tgatggcatt accccagatt
     6121 ttttagtaga agcaggagca atagaaaata taccatccac tttttacact aaacttgctg
     6181 agcttcatac acatcaaata gcaacgcagg ttcaaaaatc agtttatggt ttagatggtc
     6241 ttttacctac aacgctattg tattacgaag accaatcaac acgcgaattt actagcaaaa
     6301 ctctaaaggt aatagaaaat aaatatgtta tactagatca aacagcattt tatccacgtg
     6361 gtggtggaca agaacccgat ttgggcgaaa ttgatggtgt aagggtggtt gatgttataa
     6421 agcagggaga tatcgtagtt cataaattgc aagatgcaag aggtttcgtt gaaggcaagg
     6481 ttgtccatgg aatagtaaac gaccgaagac gcgatttgat tactaaacat catactgcaa
     6541 ctcatgtact taacacatct gctagaatca accttggatc gtgggtttgg caaaactccg
     6601 catttaaaga agaaaagtat gctagacttg acataaccca ccattctgct ttgaaccgag
     6661 aagaagtcga gagaattgaa aaaacggcta acaatgtaat cagacaggat ctgccagtca
     6721 caatcaagat atatggacga ggcgatgccg agcagaagta tacctttaga atatatcagg
     6781 gaggtgtggt tccaaccagt aacacaagaa ttgtaaatat tgagggatgg gatattgaag
     6841 catgcggcgg gacacatgtt aacaagactg gcgaaatagg gcttataaaa attacaaaag
     6901 ccgaacgaat acaggatggc atagtaagat tagattttgt cgctggtgaa gcagctataa
     6961 attatatgca aaaacaagaa aatcaactta ctgctattgc acagtcctta ggttcaagta
     7021 aggaaaaagt tgttgaatcc tcccaaaaaa gcatagatga attagaagca acaaggagaa
     7081 agataaagac agtactccga aaagttgctc ctatcatggc aaagtcaatt tctttagaag
     7141 caaagcaact atcatcagat ggcaccaagt tctatactgt gtatgatgat gaacttgatg
     7201 acgaatattg cattgctatt ggtgaaaagt ctatcgaaat tgacccatca ttaatctata
     7261 tcgcgttgat ttcaaaaggt catggaatgc gggtagttgt atttgttggt aaaaaagcaa
     7321 gacagaaaat caaggctggt atcatagcaa aacaaatttc aacccaactt ggaggttctg
     7381 gaggaggtga tgacaggttt ggccagggtg gtgctggcag taacgaaagg agcaaggaca
     7441 aaatagaaga agctttactc tcagctgaag aattggttat gaaaaacatc gcaggataat
     7501 gaagagcatg acaagcagca ctaccatccc tccttcacgc agtagcaaca acaacagtga
     7561 tagagtgaca aaaacgatag attggaattc aattgaagaa aagtggcgtc aaagatggga
     7621 tgagcaaaag atcttccaga ctgatccaca ttttggaaag aaaaaatatt tcataaccgt
     7681 agcttatcct tatccaaact ctcctcaaca tatcggacat ggaagaactt atactcttgc
     7741 tgacacccat gcgcggtata tgaggatgaa aggttacaat gtattatttc caatgggttt
     7801 ccactataca gggacaccta ttcttggtat gtca
//
LOCUS       DASQSJ010000056         2949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_401075, whole genome shotgun sequence.
ACCESSION   DASQSJ010000056 DASQSJ010000000
VERSION     DASQSJ010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2949
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401075"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1015..1896)
                     /locus_tag="VE223_01180"
     CDS             complement(1015..1896)
                     /locus_tag="VE223_01180"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HZC20235.1"
                     /translation="MIPSRSILGSNKLKIIAGIVTFIVIILIMSESAVVVQAGHRGVV
                     LYVGAVENRVLGEGLHFIVPFAEQVIQLEVRTLKFQADASAASNDLQEVATVIALNYH
                     VDPSKANIIYQQLGEDYSNRIIAPTIQESVKASVAKFNAEQLITQRETAKATIAQAIR
                     NTLSSRDILVENVFITDFQFSQAFANQVESKVVAFQKYLTEQNNLKAIQVVANQTVVR
                     AQAQARANVANATGESQAIRLITEQLRQSPQYLQWKAIGRWDGQMPFALGSGAFPFFQ
                     LPVQQSQLLKQQNQTKQ"
     gene            complement(2304..>2949)
                     /locus_tag="VE223_01185"
     CDS             complement(2304..>2949)
                     /locus_tag="VE223_01185"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HZC20236.1"
                     /translation="KEIVSFVDNNYNSSARAVFGHSSGGYGALMLGIRHPDVFNALSD
                     HSGDAAFEYCYLPDFPKALGSYRQYDNSPKKWLDNFWKKQNHHNKEDGPPLNVFAMAA
                     HYSPNPYSNEMGVDLPFDLNTGEILQDTWNRWLSWDPSKMIEKYRKNLKRLKFIYLDC
                     GTKDEFNIQWGARILHSKLESMGIKHHYEEFDDGHSHTSYRYGNSLPKIYSMLS"
BASE COUNT          913 a          532 c          518 g          986 t
ORIGIN      
        1 ataaagtcag ataaagatcg ggtacctgaa tttcaatatc gataagaaga acagtatgag
       61 ggtgaaattg ggagacaact ggaaccagtt gtcgcctttt ttacatatga ttttcctaag
      121 catcccatac caatgcaagc gggtatgagc agagacacat attggagaca tgaatccacc
      181 tttacaggat aatagcaaca tttgtgtaat gactgttacc gttttataga attaataaaa
      241 tactattcat tctcttttat taagtatgac aattaaaata gaatatacat agatgaagat
      301 gatgaaactc ctgtatatca cataccgtac agtatacaag gtcaatctcg aagtaaatat
      361 aaatcagcaa taaaattgtt gtgtgaacaa tgtgtaaatc atacactaat cagtgctaaa
      421 atatcaaaat tctaaaattg gtatatcttg tgccgttatt gtagtaatca atctttaact
      481 taatagattt taagaagagt agaaagatag aaattgatga taccatagta ttataaaaat
      541 gaagtgtgcg tgctgcggag cgcaaatgtt gcccgaaaag gagttggaaa aaacaataat
      601 tttcaaatgc agtgaatgtg gtttaagcga taccagatta aaggatatca agtaagcaac
      661 aacccatcta tacaatatct ttcaaatata ctatagatga agtaatcatt ggttatgcct
      721 gtggatgtga ttcaggaaga gcaattttac gcagttgcaa atgcctgttg cttagctaaa
      781 agcgcataac accacattga ataggatgac ccggcatatc tgattgcatt ttggatcaaa
      841 aataatcaaa tccaaaactt cttcaaagct ttatgtcagt ttactttgca ttgttttgta
      901 atgttaaact tactaagtct tggcaaggat agttatggat atttacattt accagtatcc
      961 tcaaatgaac gtcatgctgc aaatactaac tagcagttca attggaatta ggatctattg
     1021 tttagtttgg ttttgttgtt ttaataactg tgattgctgt actggtagct ggaaaaaagg
     1081 aaacgcccca cttccaagtg caaatggcat ttgtccatcc catctgccaa tagctttcca
     1141 ctgcaaatac tgagggcttt gccttaattg ttctgtaata agtcttattg cttgtgattc
     1201 tcctgtggca ttggctacat ttgctctcgc ctgggcctga gcgcgaacaa ctgtctgatt
     1261 ggctacgacc tgtatcgcct ttagattgtt ctgctcagtc aaatactttt ggaacgctac
     1321 tacttttgac tctacttgat tggcgaaagc ttgcgagaat tgaaaatcag ttataaacac
     1381 attttcaact aatatgtctc ttgaagatag tgtattacgt atggcttgag ctatcgtagc
     1441 ttttgcagtt tccctttgcg ttataagttg ttctgcgttg aactttgcga cacttgcctt
     1501 aaccgactct tgtatcgtag gtgctattat tctattactg tagtcttcac ctagctgctg
     1561 atagatgatg ttagctttgc ttggatcgac atggtagttt aatgctatta ctgtagctac
     1621 ttcttgcagg tcgtttgaag cagctgaagc atcagcttgg aactttaatg tacgtacttc
     1681 tagctgtatt acctgttcag caaatggtac tataaaatgt aatccttccc ctaatactct
     1741 attctcaact gcaccaacgt agagaaccac ccctctatgt cctgcttgta ctacaactgc
     1801 agattctgac atgattaaaa ttataacaat aaacgttact attcctgcta taatcttcaa
     1861 tttattagag cccagaatag acctagatgg tatcataaca ctatcatttg catcagtatt
     1921 gacgatgaaa gctatatatt cttactactt ccaaatgttt tggacctcaa ttcataaagg
     1981 taattatcag cactatcttc aaagcagatc tacaccttca tatatattcg agtaatatca
     2041 gctttttaat agtatcttca tggatataaa agtggtttcc agatattgca tcgagatcta
     2101 tcttgcttct gaaatggcat gtcctgctta tcttttaact ctaatctata aatgtagact
     2161 aacgtgagaa tagaatcata gattatactt gtaatgtatg taaattcaga ttttgtaaat
     2221 atatgtgcat ttatagtata ttatgatcaa ggaaataata tctagcgtat tcataaagct
     2281 ttacctattg ctatgcttcc atttcaagat aacattgaat aaatttttgg taatgaatta
     2341 ccgtatcgat agcttgtatg cgagtggccg tcgtcgaatt cctcatagtg atgctttata
     2401 cccatacttt caagctttga gtgaaggatc cttgctcccc attggatatt gaattcatct
     2461 tttgtcccgc agtcaagata aataaatttt agccttttta aattcttcct atacttctca
     2521 atcattttag acgggtccca agataaccat cgattccatg tatcttgcaa tatttctcct
     2581 gtgttgaggt caaatggtag atcgacaccc atctcgtttg aatatggatt tggtgagtaa
     2641 tgagccgcca ttgcaaatac attcagagga ggtccatcct ccttattgtg atgattttgt
     2701 ttcttccaga aattatcaag ccattttttt ggactattgt cgtattgtct ataagatcca
     2761 agagcttttg gaaaatccgg tagataacaa tattcaaatg ctgcatcacc agaatgatct
     2821 gataatgcat taaatacatc tggatgtcgt atccctaaca tgagagcacc gtatccgcca
     2881 gaagaatgtc caaataccgc ccgtgcagag ctattatagt tattgtcaac aaaagaaaca
     2941 atttctttt
//
LOCUS       DASQSJ010000057         2598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_125930, whole genome shotgun sequence.
ACCESSION   DASQSJ010000057 DASQSJ010000000
VERSION     DASQSJ010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125930"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VE223_01190"
     CDS             complement(<1..592)
                     /locus_tag="VE223_01190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20237.1"
                     /translation="MTDLTLNDKTYTVTLAEQTGTPSLECPPGQHKDTSGNCVPDIVN
                     PPPGPPPPTCNNLGPDGVMQIYPTVQGGTEFYMKDNPDKSKFNVSFGSGSHLPYQKKT
                     ENGLTFFNTTGSPINYKSGSPPGRSTRLDVYPDGGMWSNKTKNSWENNPGYLYSPKGI
                     KNGEFTSFIRVHGNLGTHQAYAHKVGGRDEDAIRSLI"
     gene            958..1218
                     /locus_tag="VE223_01195"
     CDS             958..1218
                     /locus_tag="VE223_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZC20238.1"
                     /translation="MKYRSRTEIIALILETANSGGVNKTKIMYKALLSYPQLKEYLSA
                     LIESGLLDYQESMQVYKTTDKGNRFLHVYNQLSELITTKTKR"
     gene            complement(1456..2334)
                     /locus_tag="VE223_01200"
     CDS             complement(1456..2334)
                     /locus_tag="VE223_01200"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HZC20239.1"
                     /translation="MLITIKLPLINLNPRCIWLELAMELSRKFLVRPEKMTRKLKLKE
                     WFDYDANKRKEDVEKDFTHFSSRMSELQYKLYADNTQSLLIILQGVDASGKDGTIRHV
                     MGALNPLSCYAKSFKVPTTEELSHDYLWRVHMAVPSKGQIAIFNRSHYEDVIEVGVHN
                     LIPRNELTLRYIQINDFERYLSENHITILKFFLHISKDEQKKRLMARLQDPAKRWKIS
                     ESDLQNRKHWDNYMESYEKVLSMCSTKYAPWYIVPANLKWFRDWVVAHIVVETLDNMK
                     LKYPQPKIDASKFSIE"
BASE COUNT          770 a          505 c          467 g          856 t
ORIGIN      
        1 cgatcaacga acgtatagca tcctcatcac gacctcctac cttgtgtgca taagcttggt
       61 gtgttccaag attgccgtga actctgatga agcttgtgaa ctctccattt ttgatcccct
      121 ttggactgta aaggtatcct gggttattct cccaactgtt cttcgtcttg tttgaccaca
      181 ttccaccatc tggatagaca tccaaacgtg tggatctacc tggaggactg ccagacttgt
      241 agttgatcgg tgaacccgta gtgttgaaaa atgtaagtcc attctctgtt ttcttttgat
      301 atggtaaatg gctgccgctg ccgaatgaga cgttaaactt tgatttatca ggattatcct
      361 tcatatagaa ttcagtaccg ccttgcacgg ttggatagat ttgcatcacc ccatcaggtc
      421 ctaggttatt gcatgttggt ggtggtggac ctggaggtgg attcacgata tctggaacac
      481 agttgccact ggtatcctta tgttgcccag gtggacattc caaagatggt gtccctgtct
      541 gttctgccaa tgtaaccgtg taggtcttat cgttgagagt taaatctgtc aatatggtac
      601 tcatctcata tgcagtttag cttgggatga taatatactt tattttacat cccaaacaga
      661 ttacaaataa ttgatgactg ggaagaataa ggatggcggt gatatcaata ctggtggata
      721 gtgaaaaaca agatagtcac ttccaccagt gtaaaaaaac atccaatgcg atggtttttt
      781 cgaatgcacg ccatcagaac tgcctcttat tttattaaat acctgttaac cgctttttaa
      841 ttgggattca agcctatgaa cattgcagtt ttttagatcc gaaatatcca catcttttaa
      901 gaacggcaag agttcctaag atttatcagt tagttatggt ctctaaatat tattattatg
      961 aaatatcgaa gcagaacaga aataattgcc ttgattttgg aaactgctaa tagtggtgga
     1021 gttaataaaa caaaaataat gtacaaagca cttttatctt atcctcaatt aaaagaatat
     1081 ttatctgccc tgatagaaag tggcttatta gactatcagg aatctatgca agtttataag
     1141 acaacagata aagggaaccg tttcttgcat gtatataatc aactgagtga actgatcact
     1201 acgaaaacca agagataagg cgtaacgctg gttaatatcc ctcgctgact atccgccctc
     1261 ggcgttacat ccattgctta ctattagtac aaatcgattg aattgttttt tctatattat
     1321 ggtttgataa tatagtcgag aaaaagagtt ctttgcttaa tgatgtagaa gaggctttaa
     1381 gagtagattc gtcaagattt atggataccg aaagagccaa gaacagtcgc tccacgcata
     1441 caaatacgga ccaatctatt cgatagaaaa tttcgaggca tctatttttg gttgcgggta
     1501 ttttagtttc atgttatcta atgtttcgac gacaatgtgt gccaccaccc aatcgcggaa
     1561 ccattttaaa tttgcaggga caatatacca aggtgcatac ttggtactac acatactcaa
     1621 gaccttttca taagattcca tgtaattatc ccagtgtttc ctgttttgaa gatcgctctc
     1681 tgatatcttc cagcgttttg ctggatcctg taatcttgcc atgagtcttt ttttctgttc
     1741 atctttacta atatgcaaaa agaattttag tatcgtgata tgattctctg ataagtacct
     1801 ttcaaaatca ttgatttgta tatatcttag ggtcaactca ttccttggaa tcaaattatg
     1861 aacgccaact tcgatgacat cttcgtaatg agaacgatta aaaatagcta tttgaccttt
     1921 tgaaggaact gccatatgaa cacgccaaag ataatcatgt gagagctctt ctgtcgttgg
     1981 aactttgaat gactttgcgt aacaactcag aggatttaga gctcccatca catggcgaat
     2041 tgttccatct ttccctgatg catcaactcc ctgaagaata atcaaaagag actgtgtatt
     2101 atctgcatac agcttgtatt gtaattcaga cattcgacta gaaaaatgag taaaatcctt
     2161 ctccacatct tccttccttt tgttcgcatc ataatcaaac cattccttta acttcaactt
     2221 ccttgtcatt ttctctggcc ttaccagaaa ttttcgactc aattccatcg ctaattctag
     2281 ccatatgcat cttggattta aattgattag cggaagctta attgtaatca gcatatgaaa
     2341 aataccttca caataacctc agaaggatct ttctttttga tacatatagt acagcaatga
     2401 taatgtctcc ataaacgctt tttggtagta taacaggctc tgttcactta aagacaaatc
     2461 tatagcttga agatgtccta tctctttatg aatacaataa gaaacagaac atctttttca
     2521 gaatatattg gttacggtct atctgtattt ttatttttca ggtctttcat taagaaacac
     2581 atccaaaaga ttatcgtc
//
LOCUS       DASQSJ010000058         2214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_7091, whole genome shotgun sequence.
ACCESSION   DASQSJ010000058 DASQSJ010000000
VERSION     DASQSJ010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7091"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            369..611
                     /locus_tag="VE223_01205"
     CDS             369..611
                     /locus_tag="VE223_01205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20240.1"
                     /translation="MQDPNRSFTMAQEKDNIERRRLLEIVSNKGIYALTRAELEHLHN
                     LLELVDYSSNEKANMSKKKLLKKINIAIYELYNNNR"
     gene            755..1324
                     /locus_tag="VE223_01210"
     CDS             755..1324
                     /locus_tag="VE223_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20241.1"
                     /translation="MFKFAARIRRQWLVAIGFIVLVLSIMWVTNNVTIYGQIFQPSQT
                     PAPSTTAATSTSSFSNTTTATTSFVAHGVRITSPVKGQQVPVGILTVTGTSKDNATTD
                     CQVFVIVNGIRPYQNASATGPGGDKDYSKWSFTLSPKYTLIKEGMNKIATKFSCKPNP
                     AIASFYSVNVTGTRTGVKSPATVSVPPPA"
     gene            1466..1753
                     /locus_tag="VE223_01215"
     CDS             1466..1753
                     /locus_tag="VE223_01215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20242.1"
                     /translation="MRKMALYKAIFNNIFCMKVYFAPNTSDQEIVERAVKRLVENGIK
                     EELIEINYNTQELEKGDLYVSYDPPDLVIRNVYDKKSNGLVKMNSSGMIKL"
     gene            complement(1802..>2214)
                     /locus_tag="VE223_01220"
     CDS             complement(1802..>2214)
                     /locus_tag="VE223_01220"
                     /inference="COORDINATES: protein motif:HMM:NF015113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HZC20243.1"
                     /translation="FGRKDIGATGAAGGVERLIIALRKHGILKREPKPIVYVAFSTKD
                     VCKNTLELVSNLRDSGVITEYDVQGRILRKQLDDASTKGALITIIVAPDEIKNGQVTV
                     RSMTDGSERKHAIDDLAKNLNDMMPPLQRRHQNS"
BASE COUNT          749 a          391 c          410 g          664 t
ORIGIN      
        1 gcgcaaacac taataatgat agcaaattca tctgaaacac tagagtatcc acactaataa
       61 tttggtctaa ggtttgatag atgcaccaat aaaaacaatt gttttgtact taacaacaat
      121 actactgaat aaataatcca aaccaagcaa atatctttat gcgattacgt taacttgaat
      181 aaaagtatag gctgcaaaac cctatcttga attcgggtaa atagaacaca ggatataact
      241 gcaaactttc ttttagacaa ggttactgtt gaagaatcta tgttgagttc acgttacgtg
      301 aatgttatga ctgcagtttg ttgcaaatat ttatcagatg gaggtaagca aatgtcaatg
      361 attgatctat gcaagatcca aacagatcgt ttactatggc acaagaaaag gacaatatag
      421 aaagaagaag attgcttgaa attgtatcaa ataagggaat atatgctctg acaagagccg
      481 agttggaaca cttacataac ttactagaat tagtagatta tagtagtaat gaaaaagcta
      541 acatgtcaaa aaagaaacta ctcaagaaaa taaacatagc aatttacgag ttgtataata
      601 ataacagatg agttaaaaag cactgttccg aaatagccct atcttgtcta tatgaaaatt
      661 taggcggcga tttaattatc gcgataatga tatcttgtaa atacagaata ttaattatta
      721 cctttttata atttgttgtc aaaagtagtt tggtttgttt aagttcgccg ctcggatacg
      781 gagacaatgg cttgttgcta ttggatttat tgtccttgta ctctctatta tgtgggttac
      841 aaataatgtt acaatatatg gacagatatt tcagccatca caaacgccag caccatcaac
      901 aacagcggca acatccacat catcgttctc aaatacaaca acagcgacaa catcttttgt
      961 tgcacatggt gtaagaatta catcacctgt caaagggcaa caggtaccag ttgggatact
     1021 tacagtaaca ggtacttcaa aagataatgc tacgacagat tgccaagtat ttgtaatcgt
     1081 aaatggtata aggccatatc agaatgcctc agcaactggt cctggtggag ataaagatta
     1141 ttcaaagtgg agttttactc tttctcctaa atataccttg attaaagagg gaatgaataa
     1201 aatagctacc aaattttcat gcaaacccaa tcctgctata gcatcatttt atagtgtaaa
     1261 tgtaactgga acaagaacag gagtcaaatc accggcaact gtatctgttc cgccacctgc
     1321 ctaacgattt tcttagtgtg tagtggtttc atgaaaaatt acctcggata ctcttgaaat
     1381 gaaaatatat ccgtatctga ctgtgatgat aaggtgtgac ggcaacaaca acagcaacaa
     1441 caataacgac tacctggctt aagtaatgag gaaaatggct ttatataaag ccatttttaa
     1501 taatattttc tgcatgaagg tttactttgc accaaatact tctgaccagg aaattgtaga
     1561 gagggctgtt aagagattag tggaaaacgg cataaaggag gaattaatcg agataaacta
     1621 caatactcag gagctggaaa aaggtgactt atacgtaagt tatgatccgc cggatttggt
     1681 gattagaaac gtctatgaca aaaagtcaaa tgggcttgta aaaatgaata gctctggaat
     1741 gataaagcta tagagtatta ttaacactgt tgttagtgct tatatgtata tattgttgat
     1801 actatgaatt ctggtgtcgc cgctgcaatg gtggcatcat atcattcaaa ttttttgcca
     1861 agtcgtctat agcatgttta cgttcacttc catctgtcat tgagcgaacg gttacctgtc
     1921 catttttaat ttcatccgga gccactatta ttgtaataag agcgcccttt gtagaagcat
     1981 catcaagttg ttttctgagt atcctgcctt gaacgtcata ctctgtaatg actccgctat
     2041 cacgtagatt cgatactaat tccaaggtgt ttttgcatac atccttagtt gaaaatgcga
     2101 catatactat aggcttgggc tcccgtttta ggataccatg ctttcgcaat gctataatta
     2161 gccgttccac tccacctgcg gcacctgtgg cgccaatatc cttccttcca aaag
//
LOCUS       DASQSJ010000059         4293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_361406, whole genome shotgun sequence.
ACCESSION   DASQSJ010000059 DASQSJ010000000
VERSION     DASQSJ010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4293
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361406"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            670..1689
                     /locus_tag="VE223_01225"
     CDS             670..1689
                     /locus_tag="VE223_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZC20244.1"
                     /translation="MHESEYCISVSNLKKQYGKNNAYAVNSVTFNVRYGTVFGFLGPN
                     GAGKTTTLKILTTLLDPSSGSVRIFGKDLVKNQSEIKRRIGVVSQNPSFEANLTIERA
                     LDLYGMLWGLRDRKIRKEKVNEILETFELGSIRNAKNDELSIGQRRRVQVAREFMHDM
                     DLLFLDEPTVGLDPSARRLLLDYIKAHVKSGLTVFFTTHIIEEAGYLCDEIAVIDNGK
                     IIAFDTPAGLKQKYGRGAKTIELIFKDMLDKSFIDLLNTTISKRDVNGEDNNKNNSRS
                     HIDVIGTHMVRITVNNAEQIMAKISQLAYINGLNIESIAINPPSLEEVFLSIINETKG
                     KKANE"
     gene            2088..4238
                     /locus_tag="VE223_01230"
     CDS             2088..4238
                     /locus_tag="VE223_01230"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZC20245.1"
                     /translation="MNERIKVLHRAEVINAMLDILYNSEHRIDSCGNSRFPSLIFSFE
                     SIREAIMSVKNRKKYTRQRYIFEITQQNIQYCKDLMKIAEIHHMNEIEANFLLNEKEY
                     LGSITLKEPHQQAIYSNVREIVQQQQNIFDTLWNKSVPAEKKIKEIEEGTIHYETRLI
                     EDAQEIVKEISRLTASSTELCTCLTAGGMQYSYNHFFDIKKKLLDKQKKGEHKGIRYI
                     SNIDKHNVNFAKILLDAGIEIRYLKNLPPMSFGVSDKEIAATIEKMEDGENVQSLLLS
                     NEPIYVNHFYHIFEELWKNGIDAKDRIRDIEEGVESASIEIIPSPSYSIKRAYDLINS
                     AQEEVLRIFSSMNAFRRQARLGIMHLFKDLVERGVRVRILIPADQREITQIVNEVNLV
                     LPQLEIGSVDKSLESTVGILVIDRKESLIIETKDDTKHSSYDAAGLASYSNSKPIALA
                     YASIFDTLWKQTELHQKLSNMYERLRIQSKMQKEFIDVAAHELRTPIQPILGITDILL
                     RSNNTRIDETSAAKQDELLDIIMRNARRLQRLADDILDVTKIESESLNLKKEFFNLND
                     VITNSVEDTITNIAKKSQQGDLKLLYQPRDIFLEADKSRITQVISNILDNAIKFSKAN
                     LNKEEGVGIINISAKKADGSQVIVSIKDTGIGVDPEILPRLFEKFVSRSFQGTGLGLF
                     ICKSIIEAHGGTIWAENNSNGIGSTFYFSLPLSN"
BASE COUNT         1579 a          699 c          795 g         1220 t
ORIGIN      
        1 ctaccggtgc tctgcctacg agaggccaat cgtcttgaca ttgatgatga tggacatcct
       61 ataagatgaa tcacagccac agctatcggc taaatctaag gaattcatgg tccttctgcg
      121 attatttctc tgtttgtgaa attctggaaa gcaggattga gccatctctg accgtatttg
      181 ttcccattgt tcacgtagag ttccatactt gaagcaattt ttcatccatt gtaaccacca
      241 tgtccattcc tcctcattaa gtacatttct ttcatgccta gcgtatacat gagaacaaat
      301 ccataagata tagtatacaa aagctaattc ttctgatggc ttatctagct cattaagaac
      361 tcgagtttgc tgatcaattg agactttgca tttgcttttt tgagaaaaaa agagtcgata
      421 tcgtagttcc tgctattcca attgtttgga ctatactcat gtcagaaaat cctattatac
      481 cctcaaccat taagcaaaat cgcataagta ttcatagcat tatcgagtgt cctatagtca
      541 ttgttttgca tatatatcga tctatgaaca gtgtatggct ataattctta caaagacgac
      601 ctgtgagtac agacaaacaa acaaacaaat ttaagacaac aaataatgtg caagtcaaac
      661 ccagtgtcca tgcacgaaag tgaatattgt atttcggttt ctaaccttaa aaagcaatat
      721 ggcaagaata atgcttatgc tgtaaatagt gtcacattta atgtaagata cggaacagtc
      781 tttggatttc ttggaccaaa cggtgccgga aagactacta cactaaaaat tcttacaact
      841 cttcttgacc cctcatctgg aagtgtacgt atcttcggaa aagatcttgt caaaaatcaa
      901 tcagagatta aaagaagaat aggagttgta tctcagaatc ctagttttga agcaaatttg
      961 acaatagaaa gagcactcga tttatacggt atgttatggg gactgcgtga taggaaaatt
     1021 agaaaagaaa aggtaaatga aatcctagag acctttgaac taggatctat cagaaatgcc
     1081 aagaatgatg aactctccat aggtcagaga agaagagttc aagttgcacg ggagttcatg
     1141 catgatatgg acctcctatt tcttgacgaa ccaacagttg gtttggatcc ttcggcacga
     1201 cgactacttt tagattatat caaagcccat gttaaatccg gcctgaccgt tttctttact
     1261 acccatatta tagaagaggc aggctatcta tgtgacgaaa ttgctgttat agacaatggc
     1321 aaaataatag cattcgatac gcctgcaggg ctaaagcaga aatatggaag gggagctaaa
     1381 actatcgaac ttatctttaa agatatgcta gataaatcct ttattgattt acttaatact
     1441 acaatcagca aaagagacgt taatggcgag gataataata aaaataatag caggtctcat
     1501 attgatgtta ttggaaccca tatggttagg attacagtta acaatgcaga gcaaatcatg
     1561 gcgaagatat cacagcttgc ttacataaat ggcctaaaca tagaaagtat tgcaatcaat
     1621 ccaccatcgc tagaagaagt attcttgtca ataattaatg aaaccaaagg aaaaaaggcc
     1681 aatgaatgac taatgttgat aatagtaaag caaaaatacg tacttatact gcaatactcg
     1741 ttttaataaa aatgtgaaaa gaatatccat tcctttaccc atgccaggca actttcagga
     1801 gtacgtataa agaaagtaca aacaaagcgg taatatacta taatagctaa aattgttgat
     1861 tcaattagaa ggataaccgc taaggagaaa gttgtctaga tcttttggat acatgtatgg
     1921 ttacaatgat aatttcacat accctagaag tttaaaaaaa tcaaactatc aataaaaaat
     1981 ggagactaca catcggcaca atgtgtcaat aagtacacga aattatgttg gcattagatc
     2041 tatcttatat tcatcaacac ccttattatt atcgtagaac acctctaatg aacgaaagga
     2101 ttaaggtatt acatcgcgct gaagtcataa atgcgatgtt ggacattctc tataactcag
     2161 agcatagaat agatagctgc ggcaattcta gatttccttc tttgatcttt tcttttgaat
     2221 ccattagaga agcaataatg agtgttaaaa atagaaaaaa atacacaaga caaagatata
     2281 tcttcgaaat tacacaacaa aatatccaat actgcaagga tttaatgaaa attgctgaga
     2341 tacatcacat gaatgaaatt gaagctaact ttttgctcaa tgaaaaggag tatttaggct
     2401 ctataacttt gaaggagcct catcaacaag ctatctatag taatgtaaga gaaattgtac
     2461 aacagcaaca gaacattttt gatactttat ggaataaatc agtacctgca gaaaagaaaa
     2521 ttaaagaaat agaagaggga acaatacact atgaaactag actaattgag gatgctcaag
     2581 agattgtaaa agaaatcagt cgcctaactg ccagttcaac tgaattatgt acttgtttga
     2641 cagctggagg aatgcaatat agctacaatc atttttttga tataaagaaa aagttattgg
     2701 ataagcaaaa gaaaggtgag cacaagggca tcagatacat aagtaacata gataaacata
     2761 atgtaaattt tgctaaaata cttcttgacg caggtatcga aataagatac cttaaaaatt
     2821 tgccaccgat gagctttgga gtttcagata aggaaatagc agctaccata gaaaagatgg
     2881 aggatggcga aaatgttcaa agtctattgc ttagtaatga acctatatac gttaaccatt
     2941 tttatcatat atttgaagaa ttatggaaaa atggaattga tgctaaagat agaataagag
     3001 atattgaaga aggtgttgaa tcagccagca tagaaattat tccaagtcct tcatattcta
     3061 taaaacgagc ttatgattta ataaattcag cacaggagga agtattgaga atattttcct
     3121 caatgaatgc gttccgtcgt caagcaagat tgggtataat gcacttattc aaagacctag
     3181 tagaacgtgg tgtaagagtt agaatattaa ttcctgctga ccaaagggag ataacacaaa
     3241 tagtaaacga agtaaacttg gtattgcctc agctagagat tggaagcgtc gacaagagtt
     3301 tagaaagtac agtcggaatt ctagtaattg atagaaaaga atccctaatt attgagacaa
     3361 aagatgatac aaaacatagt tcctatgatg cagcaggatt agcttcatac tccaatagca
     3421 aaccaattgc tttagcatat gcatctatat ttgacactct ttggaaacag acagaactac
     3481 atcaaaagtt gagcaatatg tatgagcggc taagaattca aagtaagatg caaaaagagt
     3541 ttattgatgt agcagctcat gagcttagga ctcctataca accaatactt ggcataactg
     3601 atattcttct tcgttctaat aatactcgca tagatgaaac atcagcagca aaacaagatg
     3661 aattgctaga tattataatg agaaatgcaa ggagattgca gagacttgct gacgacattt
     3721 tagatgttac aaaaattgaa agtgagtcac taaacttaaa gaaggagttt ttcaacttaa
     3781 atgatgtaat aacgaatagt gtagaggata caataacaaa cattgctaag aagagccaac
     3841 aaggagacct taaattactg tatcagcctc gcgatatatt cctagaagca gacaaatcaa
     3901 ggataactca agtaatttcc aatattctag ataacgccat taaatttagc aaagcaaatc
     3961 tcaacaaaga agagggagta ggaattataa atattagcgc taaaaaggct gatggtagtc
     4021 aggttattgt cagtattaag gatactggta taggtgtaga tcctgaaata ttgcctagat
     4081 tgtttgagaa gtttgtttca aggtcttttc aaggaactgg gttgggacta tttatctgta
     4141 aaagtattat agaggctcat ggtggcacaa tatgggctga gaacaacagt aatggcatag
     4201 gatctacatt ctactttagc cttccattaa gcaattaaac taataccatt aatcgatatg
     4261 cctcactgca gtaactattg gagatgttgt tag
//
LOCUS       DASQSJ010000060         4864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_7206, whole genome shotgun sequence.
ACCESSION   DASQSJ010000060 DASQSJ010000000
VERSION     DASQSJ010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4864
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7206"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            780..4007
                     /locus_tag="VE223_01235"
     CDS             780..4007
                     /locus_tag="VE223_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20246.1"
                     /translation="MDRIGNSSNYGYRHRLRKRTRIMNSMAIILAIILVTSIFTIENS
                     LILNRPVYGIIAGQQAQQNTFIPPELAASTINSGKPPSTDKFNITKGYTVKPVLWNLT
                     LPSSVAFDGKGNMFVAESGLGFGGLQATARILKIDTNGTISTLTDRFLSAPVTSIVYH
                     QGKLYVANKAKISTVNPINGAVADIITDLPAGGDHPTNQIAFGADGRLYFAQGSATNS
                     GVVGEDSYSPNLGWLASFPFVHDVPGKNVTLTGQNFETPNLLADGPKKISIVKDLITK
                     ISTTKTAGKESSGKGTGAVPGNITGNVTTGAFVAFGNSTHKGEVVNGNVRCSGCIISA
                     KPDGTDLKLVAWGMRLDAYTGLAFDRSGKHLIVTDPGAEERGSRPIKGDDDKIWNIDV
                     SNSKNLGKWYGWPDFFGGKNKELKPVTDPQFKSPRGGSKPLQFLMENHPTIPKLFADA
                     GYAVKLTAAALSNTSSSFGFGGMAFIGEYGTHAPFTHDFQQKVKEYIPGNTNKTIIGQ
                     KIIKLDTTTGNFSDFISLKKPDASFRPVGLSFSPDGNALYIASLGKSETIKSLPNGAP
                     LPIPTIWMYPSTGVIWKVTRSVAATVAEPPPNKLRLSPELTVTVNSGPKPTIDHFKLP
                     QGYKMEPVLWNLNVPGSVAFDDKQNMYIGYVGFAYVGLEPPPKILKVDHQTGNVSVFV
                     DRGLDRPLTGITFHKGLLYVSNGGKISTVDMKGLLKNIIVALPGIGDHYVDQIAFGRD
                     DRMYFDVGTATNSGIVGKDNPWAKQMPEFHDIPGKDVKLAGVNFKTRNFLSAPFNLNS
                     TTGAYVPFGTATKKGQLIKGDVKCTGCILSANSDGTDVKLVGWGFRHAYGLGFTPDGK
                     LVASMNAADERGSRNIANDGDKIYVIDVSNSSNFGKFYGWPDFFGYAQPVTNPLFQSP
                     LNNQSLQPLIQNDPPAQKPALVADVGAALTHIAISNSTKFGFKGMALIGEFGTLAPQT
                     HLTANSRLGMNIGSVMGQIIGQRIAVFDPTTFSLKDFLTLNTADGNFRPTGLAFSPDG
                     NTLYIASVGLNEVRTISPSGAAVPFPLGLPWAFENTGVVWKVTHS"
     gene            4140..>4864
                     /locus_tag="VE223_01240"
     CDS             4140..>4864
                     /locus_tag="VE223_01240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20247.1"
                     /translation="MNFEKLKKIKRIQERGEDGVTYSASEGKDNNNNDGDDKNTENSN
                     KTRPRLILACVDLQKGEPVVFDSIDTDIDIENVIACTGYATYGLPWTKKDGRYLWDGS
                     LRHNTPLKAVVSASPKREKRLYMCDVFPSKQEKLPANMLETLHRVRDLLFMDKSIEEL
                     KVRSDLTKKHLKFIEKMYDVMMRNNISKIEKNAASKSRFKELEQEYNSIIQERGTIID
                     KLLLAQRKEKPGHRFLFEDADFS"
BASE COUNT         1611 a          904 c          994 g         1355 t
ORIGIN      
        1 tttttgcttg tggcagcttg agccaagaat ttactagcaa cattactaac agctgtcaat
       61 ttaggaaata ccaacaatgt aattattacc aagattactg caataaacgc aactatacga
      121 ttctcatcca ttgcccaatc attaacaata tttgatataa atatgttgta gtcttagagc
      181 ccatcccaaa attatccttc ggtatgcaat tatgcagcgt aacaaatgta ctagtccaat
      241 gcaattctct gctttctttt catatctaac caatagtttt ctaaatctgt tgtgtcatga
      301 atttgttctt tttataacaa cccatcttct tgcagaatat cttgtcttta tcaaattgtt
      361 cttctcctct atgacgaata tgcgcatgta tcttcttttg gtagattctc gttctatttc
      421 tgaaaagtcg tagcctttgt gaatatacag acaaaaataa ttgagatcat atcttctcca
      481 cttaattttg gtgctgtcat attattatcg ccattataca agcattggaa taattcagga
      541 aagaaccata aaacccaata atgctgtatt acctgtagaa acaacttgaa tgtatcctga
      601 tacaggcgtg atatgggaaa taacacacga ggataataac tccactacat caatacgtag
      661 cggaatagaa ccgacatgat actactataa aatcaattta gcactactta aaatctgtag
      721 aatttattct gaagtaaatg tattctccct taatattata ggatgtgttt ccactttctg
      781 tggatcgcat cggtaatagt agtaactatg gttataggca tagactaaga aaacgcacaa
      841 ggataatgaa ttctatggca attatattag caatcatatt agttacgtca atatttacga
      901 ttgaaaattc tctaatttta aatagacctg tttatggaat tatagcagga cagcaggcgc
      961 agcaaaatac attcattcca cctgagctgg cggcttcaac tataaattca ggtaaaccac
     1021 ctagtacaga caagttcaac atcacaaagg gttatactgt aaagccagtg ctttggaacc
     1081 ttacactacc tagcagtgtt gcgtttgacg gtaaaggaaa tatgtttgta gcagaatctg
     1141 gcttaggatt tggtggatta caagctaccg cacgaattct caaaattgac acaaatggaa
     1201 caatatccac tcttacagac aggtttttgt cagctcctgt tactagtata gtataccatc
     1261 aaggcaaatt atatgtcgcc aataaagcca agatctcaac agttaatccg atcaacggcg
     1321 ctgtagccga tattattact gacctgcctg ctggtggtga tcatcccaca aaccaaatag
     1381 cctttggcgc agacggcaga ctttactttg ctcaaggaag tgcaactaat agcggtgtgg
     1441 taggagagga tagctattct cccaatttgg gctggctagc aagctttcca ttcgtacacg
     1501 atgtgccagg caagaatgtg actttgacag gtcagaactt tgaaactcca aatcttcttg
     1561 ccgacggacc taaaaaaata agcattgtaa aagatttgat aacaaagata tctactacaa
     1621 agacagctgg taaagagagt agtggaaaag gcaccggtgc cgttccgggt aatattactg
     1681 gaaacgttac tacgggcgcg tttgtagcat ttggaaatag cacgcacaaa ggagaagtag
     1741 ttaatggaaa tgtcagatgc agtggctgta ttataagtgc aaaaccagat gggactgatc
     1801 tgaagcttgt tgcatggggg atgagacttg atgcatatac aggattggcc ttcgatagat
     1861 ctggtaaaca tttgatagta acagatccag gggctgagga aaggggtagc aggccaataa
     1921 aaggagatga tgataaaata tggaatatag atgtctctaa cagcaagaat ttagggaaat
     1981 ggtatggttg gccggacttt tttggaggta aaaacaaaga actaaagcca gtaacagatc
     2041 cgcaattcaa atcaccaagg ggaggaagta aacccctgca gtttttaatg gagaaccacc
     2101 ctacgatccc gaaattgttt gctgacgctg gttatgctgt taaattgact gccgctgcac
     2161 tatccaatac aagcagcagt tttgggtttg gcggcatggc ttttatcggt gaatatggaa
     2221 cacatgctcc attcactcat gattttcagc aaaaagttaa agagtacata ccaggcaata
     2281 caaataaaac aataataggt caaaaaatta taaagcttga taccactacc ggaaacttta
     2341 gcgattttat atctttgaaa aaacctgatg caagctttag gccagtaggt ttgtcgttta
     2401 gtcctgacgg aaatgcactt tatattgcaa gtcttggaaa aagtgaaacc ataaagtctt
     2461 taccaaacgg agcgcccttg cctatcccca ctatatggat gtatcctagt actggagtaa
     2521 tatggaaagt gacgcgctcg gtagcagcaa ctgtagcgga gcctccacca aacaaactac
     2581 gattatcgcc agaactgacg gtgacagtaa attcaggtcc caaacccacc atagatcact
     2641 tcaaattgcc acaaggatat aaaatggagc cggtgctttg gaatttaaat gtccctggca
     2701 gtgttgcctt tgacgataaa caaaatatgt acataggata tgtaggtttt gcatatgttg
     2761 gtcttgaacc tccgcccaaa atattgaagg tagatcatca gactgggaat gtttctgtgt
     2821 ttgttgatag gggactagat agaccgctta ccggtatcac tttccataaa ggactactat
     2881 acgtatctaa cgggggcaag atttcaacag tcgatatgaa gggactatta aagaatatca
     2941 ttgtagcatt gcctgggata ggtgaccatt atgtagacca aattgcattt ggtcgtgatg
     3001 atagaatgta ctttgatgtc ggaactgcaa ctaatagcgg tattgttgga aaagacaatc
     3061 catgggcaaa acaaatgcca gaattccacg atattccagg aaaagatgta aaactagcag
     3121 gagttaattt taaaacaaga aactttttgt ccgcgccttt taacttgaac tcaactactg
     3181 gcgcatatgt tccatttgga acagctacaa agaaaggcca attaattaaa ggtgacgtaa
     3241 agtgtactgg ttgtatactg agtgcaaatt cagatgggac tgacgtaaag cttgttggtt
     3301 ggggctttag acatgcttat ggattaggat ttaccccaga tggcaaattg gttgcatcaa
     3361 tgaacgctgc tgacgaaaga ggaagtagaa atatagccaa tgatggagac aagatttacg
     3421 tgatagatgt ttcaaactca agcaatttcg gcaaatttta tggatggcct gatttctttg
     3481 gatatgcgca accagtaacc aacccactat ttcaatctcc attgaacaat caatcacttc
     3541 agccgttaat acagaacgac ccaccagctc aaaaaccagc attagtagct gatgtaggtg
     3601 ctgccctgac gcatattgca atttctaata gtactaagtt tggatttaaa ggaatggctt
     3661 tgatagggga attcgggact cttgctccac aaactcattt gactgcaaac tccagacttg
     3721 gtatgaatat agggtctgtg atggggcaaa taataggaca gagaatcgcc gtattcgatc
     3781 cgacaacgtt tagcttgaag gactttctca cactaaatac agcagatggt aactttaggc
     3841 ctacaggact agcatttagc cctgatggca atactctcta tatagcaagc gttggactta
     3901 acgaggtaag gacaattagt ccatcaggag cagcggtacc attcccactt ggattgccat
     3961 gggcatttga aaacaccgga gtagtatgga aggtaacgca ttcataatag tatagaggat
     4021 atgtagaatg gctatcccat atcctgtatt tattattgct tcctctaccc tattactatt
     4081 tatttaactc accttatctc tattctaata cacagctaaa aaagactcta aataagtatg
     4141 tgaattttga gaagcttaaa aaaataaaaa gaattcaaga acgtggggag gatggtgtca
     4201 cttatagtgc ctctgaaggc aaggataata acaacaacga tggcgatgac aagaatactg
     4261 agaatagtaa taaaaccaga cctagactaa ttctagcatg tgttgatcta cagaaaggcg
     4321 aaccagtagt ttttgatagc attgacacag atatcgatat agagaacgtg atagcatgta
     4381 caggttatgc cacgtatggt ttgccgtgga ctaaaaagga tggcagatat ctgtgggatg
     4441 gtagcttgag gcataacaca ccactaaaag ctgttgtcag cgcatcgcct aaacgtgaaa
     4501 aaagactgta tatgtgcgat gtatttcctt ctaaacaaga aaaacttcca gccaatatgc
     4561 tcgaaacatt gcatagagta agggatctgc tgtttatgga taaatctatc gaagaactta
     4621 aagtcagatc tgatttgaca aaaaaacatc ttaagttcat tgaaaaaatg tacgacgtca
     4681 tgatgaggaa taatatctcc aaaattgaga aaaacgctgc ctccaaatca aggttcaaag
     4741 aattagaaca agaatataat agcatcatac aagaacgtgg cacaataata gacaaactat
     4801 tactagcaca acgtaaggaa aagccaggcc atcgcttctt atttgaagat gctgattttt
     4861 ctat
//
LOCUS       DASQSJ010000061         2752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_43147, whole genome shotgun sequence.
ACCESSION   DASQSJ010000061 DASQSJ010000000
VERSION     DASQSJ010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2752
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43147"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..1042)
                     /locus_tag="VE223_01245"
     CDS             complement(266..1042)
                     /locus_tag="VE223_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20248.1"
                     /translation="MKTGFGNKLQSDLSETFNKKSIDFTIVKSHVLGGEKAALSCLLF
                     SVMIVAVVVLFYSIWPSTQSVFAQGSAITSQNKENPLSPQGNTNTAAGNTGNSATFSN
                     INNNTKGAIVEKISDKGNYRVQIMWNQSSLSLPKKGFDMEIDFLNASAPLPSAKTIPP
                     KDTGIKSEESTGASSSHVPVPAVIQPNVPVDKYDITIYSDHGKVLWKKVNQTPTGGRG
                     LATVKFGNGGYTGPMTIQITNIKSGNIPTNSVTFSAKTGG"
     gene            complement(1447..>2752)
                     /gene="pheT"
                     /locus_tag="VE223_01250"
     CDS             complement(1447..>2752)
                     /gene="pheT"
                     /locus_tag="VE223_01250"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HZC20249.1"
                     /translation="LNNGIGRLRKKASIGIHNLDSIKFPVTYKTVDEDFSFVPLDRMS
                     SQTIKAILKTSKSGKEYGYILENKSKNYPILVDSENNVLSFPPIINSNSTKINKYSKS
                     LFVEVTGTNQKSIEDILAILAITLYDAGFQIQSVSIRNFDGTHYTAKMDPSDISIDPH
                     YINTMLGLDLGINLIVKYLHKSRVNAEEIDKNMIKCAIPRYRTDIFSGVDIVEEVAIG
                     YGIYNLKPTTPYSNLTGDKSSLSRYIDVIRQTMVGLQMLEVTNFSLVSNKVQYGLSGM
                     KSPAKIPQLDGTKSEEHQILRDTLLPSLLKTLSHNVHEEYPQKLFEIGKTFHLSDTIT
                     ECWKIGAIIAHKNAEYTEIKSVMQALLRMAFGKNAETKVDTNPIFIAGRCANIVVDED
                     CIGILGEVTPLAIDSFKVRVPVAAFELNLSRLLSKYRRDLYF"
BASE COUNT          765 a          540 c          468 g          979 t
ORIGIN      
        1 ctttgacacc aatccttctt tggtttgtat aaagtcctta gttatagatt ggatcttgcc
       61 caaatcttta ttatcactag attttacttt catgtcgatg gccttatccc atgatataat
      121 atcagacatt ttccttattc atatgctaat tcaatcacat gcaatttatt agtttaggct
      181 gattttacat gttttatttg atttttgcat gcataaatga attcatttga aattgtgtga
      241 gttttgatag atagatagat agatatcatc cacctgtttt ggcactaaag gttacagagt
      301 ttgttggtat attacccgat tttatgttag ttatctggat agtcatcgga cccgtataac
      361 ccccatttcc aaatttaact gttgcaaggc ctcttccacc tgttggggtc tgatttactt
      421 tcttccagag caccttacca tgatctgagt aaattgttat atcatattta tctacaggca
      481 cgttaggttg tatgaccgct ggaacaggaa catgactaga acttgcacca gtactctcct
      541 cactctttat gccagtatct tttggcggga tggtctttgc cgatggcagt ggagcgcttg
      601 catttaaaaa atctatttcc atatcaaaac ctttttttgg aagagaaagt gaagattgat
      661 tccacattat ctgtactctg tagtttcctt tgtccgaaat cttttcaacg atcgctcctt
      721 ttgtattatt attaatgttc gagaaagttg cagagtttcc ggtattgcct gcagcagtat
      781 ttgtatttcc ttgaggagat aatgggtttt ccttattctg acttgtaata gcagagccct
      841 gtgcaaatac ggattgagtt gatggccaaa tcgagtaaaa aagaacgaca actgccacga
      901 tcatcacaga aaataaaagg caacttaatg cggctttttc tccacctaga acatgactct
      961 taacaatagt aaaatcgatt gattttttat taaatgtctc tgacaagtca ctttgcaatt
     1021 tgtttccaaa tcccgttttc attcaataat ttatcatgcc gcttagtata taggagtttt
     1081 atccttagcc ttttctcttc aagagcaaac gtcggtttat gcaatccaaa aaatttaaac
     1141 aatacatcat catacccttt gctttcaaag cacatttgtt atatagatta tgatttcttg
     1201 tgcgtgttat acctattttc taatatttgc cttatctatc aacagtattg tctttttggg
     1261 tataacaaaa tgtcccccgc ctctgaccca cacatgatca caggtagcca tacactcaag
     1321 tgtattcctc catgtgcact ctctataacg gggtgccctt acgcttgcct tagtggatca
     1381 tgaattacta cgcatagtta tctcatgcca ccagcgagca attgcaggcg atctttctgt
     1441 atcagttcaa aaatataaat ctcgtctata ttttgacagc aatcgggata aatttagctc
     1501 aaaagcagcc actggaactc gtactttgaa actatctatg gccaaaggtg taacttcgcc
     1561 caaaatacct atgcagtctt catcgacaac gatatttgcg catctcccag caataaaaat
     1621 tggatttgta tctactttgg tctcggcatt tttgccaaag gccattctca ataatgcctg
     1681 cataactgat ttaatttccg tatattctgc atttttatga gctataattg ctccgatctt
     1741 ccaacattca gttatagtgt ccgacaagtg aaaggtcttg cctatttcga atagtttttg
     1801 aggatactct tcatggacat tgtgtgacaa tgttttaagc aatgagggaa gcaatgtatc
     1861 gcgtaggatt tgatgctctt cgctctttgt cccatccaat tgaggaattt tggctggact
     1921 tttcatacca gacagtccat actgtacttt attgctcaca aggctaaaat ttgtaacctc
     1981 aagcatttgc agtccaacca tcgtttgcct tattacatca atgtacctgg aaagagaact
     2041 cttatcccca gtcagattcg agtatggagt cgtaggtttc aaattataga tcccataacc
     2101 tattgcaact tcttcaacga tatcaacacc gctaaatata tcggttctat atctaggtat
     2161 agcacattta atcatatttt tatctatttc ctcagcattt actctgcttt tatgtaaata
     2221 ttttacaatt agatttattc caagatctag gccaagcatc gtgttgatat aatgaggatc
     2281 aatgctgata tctgatgggt ccattttagc tgtgtaatga gttccatcga aattgcgaat
     2341 cgaaacactt tgtatttgaa accctgcatc atataaggtg attgccagaa ttgctaggat
     2401 atcctctata gatttttgat tggtgcctgt gacttctaca aataggcttt tactatattt
     2461 gttaatcttt gttgaattac tatttataat aggaggaaag gacaaaacat tattttctga
     2521 gtctacgaga attgggtaat tcttcgattt gttttctaat atgtatccat actccttgcc
     2581 tgacttggat gttttcaaaa ttgctttaat ggtttgactg gacattcgat caaggggaac
     2641 gaatgagaaa tcctcgtcta ctgttttata tgtaacagga aatttaatgc tgtcaaggtt
     2701 atggatccct atcgaagcct tctttcttaa ccttcctatt ccattattta ga
//
LOCUS       DASQSJ010000062         3846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_86793, whole genome shotgun sequence.
ACCESSION   DASQSJ010000062 DASQSJ010000000
VERSION     DASQSJ010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86793"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(420..935)
                     /locus_tag="VE223_01255"
     CDS             complement(420..935)
                     /locus_tag="VE223_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20250.1"
                     /translation="MFGKGKNKEEQEEKRKHVERFYILLSSLMNELLEYAAKFGHVKM
                     PYNVSFGLIHDKRDSVLLKGIDQKTGKKMYLYNTRIIAKMFEERREQILKDNTTNTLF
                     GWVSDVCSLYIRPFVYEYVVEMQHRGEGAAERTTRQIVRGFIDKLHNDPELKYVLDNM
                     KEGDSTNKSAV"
     gene            complement(1662..2429)
                     /locus_tag="VE223_01260"
     CDS             complement(1662..2429)
                     /locus_tag="VE223_01260"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HZC20251.1"
                     /translation="MRLLDGRVAVITGSTRGNGRAMANLFSEHGANVVVTGRDEKEAH
                     STAEQLVREYQTNALGLKLDVSVTDEVNEIVSKVYKKYGQIDILVNNAGYPIKDQLWD
                     ASFEQIQDQDLENVVNVDTIGTYRCCRAVLPSMVEKHRGVIINLSSTPAISGYIKGAP
                     YTVAKAANLGITKHIADEFGKYGIRCNAIAPGTIATQRNWDRLTTEQRIDIVRSIPLG
                     RAGKPEEIASVALVLASDYTSFVNGQTIVVDGGETIR"
     gene            2730..2993
                     /locus_tag="VE223_01265"
     CDS             2730..2993
                     /locus_tag="VE223_01265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20252.1"
                     /translation="MIARGSVDNITLYIIFLLLPVLQRNYIIIYTDTRYFSVAYDHFI
                     AKAKNSLNVRLIPIRLLLQLPLEEKLRKIEQQQQQQTRKRTTS"
     gene            3304..>3846
                     /locus_tag="VE223_01270"
     CDS             3304..>3846
                     /locus_tag="VE223_01270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20253.1"
                     /translation="MTDKSKREAVKAIAEVVEEVAEPLRQYIESKGNLHEFFDAVPDN
                     GNKNESRPPQQNEKTSFDVLIDEDRVQRTEMANDSTANDLKEVLKKYGSIIVKIVDGP
                     IDKKSVQSFSKSLSDYIAISKKKKVGLALMIGDDVAQDANRLAMNYSHLSKKYHNIIL
                     IEKSERIPSDNDNRPFSTQNE"
BASE COUNT         1277 a          753 c          641 g         1175 t
ORIGIN      
        1 tcaaaaaatt atatcggatt acaaaaagtg gaaacagccg ggtggaacgt tttggtcttc
       61 aagatcatta ctgctacttt gatctgaaca cgtttagcac atgttttgtg ttcaattaat
      121 agttagacac taattaccat cgcagctact agactagaat gattatcata tgtcccaatg
      181 attgcaagaa gcaagaaata gaacctttca agcgctggat gggagactag gatacattca
      241 ttgtcttata tgccaaaacc cggagaagga ccatatataa gtgtaggcta tggatcacag
      301 tttgcaatac taaattaaaa gataggttga tgcgctccaa atccttattg ttaaagaatt
      361 tcaagtaaat atggatgtat gttttatgat ttcttctgct agcagcatta caacatgtac
      421 tatactgctg atttatttgt gctgtcacct tctttcatat tatctaatac atactttagt
      481 tcaggatcat tatgcagctt gtcgataaat cccctaacaa tttgccttgt agtcctttct
      541 gcggctcctt ctcctctatg ctgcatttcc acaacatatt cgtatacaaa aggtcttatg
      601 tataatgaac atacatctga aacccaacca aacagcgtat ttgttgtgtt atccttaagt
      661 atctgttctc ttctttcctc aaacatcttt gcaattatcc ttgtattgta aaggtacatc
      721 tttttaccag tcttttgatc aattcctttt aggagtacag aatctctttt atcatggatc
      781 aatccaaacg acacattata tggcatcttc acgtgtccaa actttgctgc gtattcaagt
      841 aattcgttca ttaatgaaga taacaatata taaaagcgtt ctacatgctt tcttttttct
      901 tcttgttctt ctttattctt acctttgcca aacactgttt aacagttcct tagttgatgc
      961 aaaataatgg caataccgta tattaaagta ctatgtggtc tgacttcttc tgcatattat
     1021 agccatacgt attcacatgt taagcaattt agaaaaaaat gcttgttatt gtattatacc
     1081 aacaaatgat agaaccaaaa ttagaatatc tgaagaaaat aatgccattt taaatagaag
     1141 tgttgccctc atcatcttgt tcattaatat tgtagcacac aaatgacggc aagcccaatt
     1201 ccaatataat agaagaaaac aattttatcc atggagtcaa tgcttagaag cgagattgca
     1261 tgacaaccac agcagaagat acgagaaata cattgaaaag aattacatgg caatcagaga
     1321 attgtttatc atgtaaatgg ttctctccgt ctgatcctgt aaatgcagac atcctaacta
     1381 atggcagatg cgttcatctg gaactcaaga aattcaacct cattatttct gggagggatt
     1441 agtgtaacct atttgatgaa atctctcaag aacaagaaca aatagatcaa atgcaagaaa
     1501 aggctatgca aagcgagcaa tagctggcta aaagagataa taacagtatt ctcagccttt
     1561 ttttcagaga tgaaaatccc agtggcaaac atacactaac atgaccatta cagacacatc
     1621 accgctatcc tgatgattta ttgacttatt gtgtatagcc gttaccgtat tgtctctcca
     1681 ccatcaacca caattgtctg tccatttaca aatgatgtgt agtcgctagc aagaaccaat
     1741 gctacgcttg caatctcctc cggcttacct gcccttccaa gtggaataga tcttacaata
     1801 tctatccttt gctccgttgt aagtctatcc caatttctct gcgtagcaat agttccagga
     1861 gcaatagcat tacatcttat cccatatttg ccaaattcat ccgctatgtg ctttgtgatt
     1921 ccaagattag cggccttggc cacagtatat ggtgcacctt taatatagcc acttatcgcg
     1981 ggtgtagaag ataggttaat tataactccg cgatgctttt caaccatgct aggcagcact
     2041 gcacggcagc atctataagt tcctatggta tcgacattaa caacattctc caagtcttga
     2101 tcttgtattt gttcaaagct tgcgtcccag agttgatctt taattggata acctgcatta
     2161 tttactagta tatcaatttg gccatatttc ttatagactt tactaactat ctcatttact
     2221 tcgtctgtca ccgatacatc aagtttcaaa ccaagggcgt tggtttgata ctctcttacg
     2281 agctgctcgg cagtactgtg ggcttccttt tcatctcttc ctgtaacgac cacatttgca
     2341 ccatgttcag aaaatagatt tgccattgct cttccatttc ctcttgttga acctgttata
     2401 accgcaaccc taccatctag caatctcatc attttgtcaa atagttaaca gaagatccta
     2461 aaatagtaga tgtaagccaa gtatttcgga ccttgcctaa ttctctatta acaagctaaa
     2521 tcatcctagt aatgtgctag aatatctaag gattaatgtc atactatcac cataacaaca
     2581 cagaaaatcc aataattaag cagaaatgag atctacccat cgcaagttca tccgtttcta
     2641 gaggttcata actcctataa ggatattgat ttttgatatt ccatttatgt agataatttt
     2701 atggcaatgt cttaagatca atcaatacat tgattgcaag aggttctgtt gataatataa
     2761 cattatatat tatcttccta ttgctccccg tactacaaag aaactacatc atcatataca
     2821 cagacaccag gtacttttcc gtagcctatg atcatttcat cgcaaaagcc aagaacagtc
     2881 tcaacgtgcg actaattcca ataaggctac tgctacagtt gccattggaa gagaagctga
     2941 gaaagataga acagcaacag cagcaacaaa caagaaagcg cactactagc taagtaaata
     3001 gattcgagaa aaattttcgt acaggtacaa ttaatctgaa cgtaaatttg ctaaaggcgc
     3061 cttccgatat aatagactat ataataatat ttaatattac atgagctatg ccaacgcaat
     3121 atggaacaca ggctttacag tatattgcaa acggtatcga gacttaaaga aatacaatga
     3181 ttaggagccc tgtaaataca gacaagtatc aaagttaata tcaaagtttt atattcgatg
     3241 ctagaacagt atttaggaac ctatgcgtga taatgaagaa gggattgagg cattagcata
     3301 gccatgacag acaaaagcaa acgagaagca gtaaaggcta tcgctgaagt cgttgaagag
     3361 gtagctgaac ctttgaggca atatatagaa tcaaaaggaa acctacatga attttttgat
     3421 gcagttccag acaacggaaa caaaaatgaa agccgacctc cacaacagaa tgaaaaaaca
     3481 tcctttgatg tattaatcga cgaggatcgg gttcaaagaa cagaaatggc caacgacagc
     3541 actgctaatg atcttaaaga agtcttgaaa aaatatggta gcattatagt taagattgtg
     3601 gatggaccca tagacaaaaa gtctgttcaa tcattttcaa agtcattatc tgattatata
     3661 gctatatcga aaaagaagaa agtaggtctg gcgttaatga ttggagatga cgtagcgcaa
     3721 gatgcaaata gactagcgat gaattatagc catttaagca aaaaatatca taacattata
     3781 cttattgaaa agtcagagcg tattccatca gataatgata atcgcccctt ttctactcaa
     3841 aatgaa
//
LOCUS       DASQSJ010000063         6094 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_560655, whole genome shotgun sequence.
ACCESSION   DASQSJ010000063 DASQSJ010000000
VERSION     DASQSJ010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6094
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560655"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..1724)
                     /locus_tag="VE223_01275"
     CDS             complement(228..1724)
                     /locus_tag="VE223_01275"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HZC20254.1"
                     /translation="MVQIRVEKAKINQKKTSLLVVGIFENERGFPQLDELDPFIASTI
                     KEIFDNKEFNGSFGSTITLYTMGKGPMKKIMLIGLGNREKFTNETARIIGGKAALNAK
                     ERASAEFSILPFSHLGDGSIEALCEGICLSLYSFARYKTNRAEQSLNVNEVTILVNEE
                     PTVLQPVVDKTSTIVEAVNFTRDLCNLPPNECNPALLGSAALSLANEYSMKARIIERY
                     EMESIGLAAIVAVGKGSNSPPKMIILEYNGASDTQKPYLLIGKAVTFDTGGISLKPSD
                     KMDEMKFDKCGGCIVLGTLRAIASLKLSLNVVAIVPAVENMPSATSYRPGDIIRMYNG
                     KTVEVLNTDAEGRMILADALAYGIKIYNPKLIVDLATLTGACVIALGANIAAAIGTNK
                     HLNERLLKASEKTGEKTWELPLLDEFHDQIKSTVADIKNIGGRPAGAITAAAFLSNFT
                     GSTPWIHLDIAGTAWTQEGTSERSYNPKGATGFGLRTLVKLLAEEENT"
     gene            2116..3744
                     /locus_tag="VE223_01280"
     CDS             2116..3744
                     /locus_tag="VE223_01280"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HZC20255.1"
                     /translation="MRYLDLKRKIRDVRMLAIQGIAEAGSGHPGASLSAAEIMGTLYF
                     RRIKHDSSKPNWGERDYFVDSKAHSAPAYYATLAVAGYFPIDEIKTLRKIGSRLQGHP
                     VRYSEQQKHHSVPGIEYSGGSEGIGLSVSIGIAIAHRLDGKNNRVYVLIGDGESNEGQ
                     VWEAAMAASKFKLDNVIAILDRNRIQQDGFTEDIMPLDPMRDKWLAFNWNVIEIDGHK
                     VEQVIDALNKAKQVEDKPTLIIANTIKGNGIKHMTNNPQWHGKAPPRKHTPILLEELE
                     SECLIAPSIIAGERENYDEKIRKAERGGADLVHLDVMDGRFVPNTTFSSNTIRKLRHI
                     TSLPFDVHLMIENPLKHIQDYIEAGGDIITVHAEACDESEFVSINESLLSKGISPGIA
                     INPSTDIPDWIYSYTENIDVVIIMSVNPGFAGQKFIPEVLPKMVMINKKLREHGFKGY
                     IEADGGIDDTTLQQVYDSGARILVTGNAVYGSSDIHGAIIQLRHKANVALERRLIEHA
                     SAIGIRSEWMKIRRHILIPLANELGIEGELHAIE"
     gene            3737..4702
                     /locus_tag="VE223_01285"
     CDS             3737..4702
                     /locus_tag="VE223_01285"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HZC20256.1"
                     /translation="MSSEKKTADMRGVYGDTLVELGRTYKEVVCVGADTTDSLKTKKF
                     GDKYPDRMFNVGIAEANLVSIAAGLAIAGKIAFASTYAAFLPGRCLDQIRNAICYPNL
                     DVKLVVSHAGLTVGPDGASHQQIEDFSTMRSIPNIRIIVPADAVSVKHLIKSIVQMHG
                     PFYVRLARPSSDILYAEGSLFEIGKGNILRDGSDATIISCGLMVTRSLEAADILKRNE
                     GISCRVVDMFSIKPVDTDLVEKCGRETGAIATAEEHNVIGGLGGAVAEASAESYPVPI
                     KRIGIRDTFGESARDEEIEALLEKYGLTSMEIARAVMEARGRSKR"
     gene            4699..5364
                     /gene="fsa"
                     /locus_tag="VE223_01290"
     CDS             4699..5364
                     /gene="fsa"
                     /locus_tag="VE223_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HZC20257.1"
                     /translation="MKIFLDTANLEAIKLYNDMGIVDGITTNPTLLSKEKGNPAEIMQ
                     EIVRIVNGPVSLEVIATRIDEILDEAHKLKKYGQNVIVKIPMIPDGMKAVKKLKEEGI
                     ETNVTLIFSANQAILAAKAGASYVSPFIGRLDDVGNEGMLVIKEIVQIFRNYEFRTQV
                     LVASIRHPVHVTEAGKVGADVVTLPPDILGKMLLHPLTDKGLGAFLSDWEKVKKENPR
                     LTI"
     gene            complement(5566..5736)
                     /locus_tag="VE223_01295"
     CDS             complement(5566..5736)
                     /locus_tag="VE223_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20258.1"
                     /translation="MVRQRQAMGILGMFFAITGGVAWFFQQTLFAVMLWGIAGIILFK
                     LNKRRTSTRTKK"
     gene            complement(5781..>6094)
                     /locus_tag="VE223_01300"
     CDS             complement(5781..>6094)
                     /locus_tag="VE223_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HZC20259.1"
                     /translation="QIKASGGTPLAEIYGLLIPVTKSFKPDIMVTLTDGEPSDFDAVR
                     EMVLTYRKMGIKMVALGVGRNLNDSVGITHNLKYLNYEKTVAVSRLQDMPKKVINLLR
                     A"
BASE COUNT         1910 a         1107 c         1245 g         1832 t
ORIGIN      
        1 gataactata ttataactac caatacaatt cgatagccgt atagtattaa gacgttcgct
       61 atcttcaaga aggattttag tagaagaaat aaagatatta tcttattata gatatctctg
      121 atctggccct gttcgtgcat atttattgat ggagacgcat gcattgcata aagataagag
      181 tgctttgacg attaattttc cgtaagtaaa tataggttga aaagggatca tgtgttctcc
      241 tcttctgcta ataactttac tagcgtcctt agtccaaaac ctgtggcacc ttttggatta
      301 tagcttctct cacttgtccc ttcttgtgtc caagcagttc ctgcaatatc caaatggatc
      361 catggagtac tgcctgtaaa gtttgatagg aatgcagcag cagttatggc acctgctggc
      421 cttcctccaa tgtttttaat atccgctacc gtgcttttaa tctgatcatg aaattcatct
      481 aatagcggga gctcccatgt tttttctcct gttttctcag aggcctttaa cagtctttca
      541 tttagatgtt tatttgtccc aattgctgcg gctatgttgg cgccaagtgc aataacgcac
      601 gcaccagtaa gggtagccaa atcgacgatt agcttagggt tgtagatttt gatgccataa
      661 gccaatgcat ctgcaagaat cattctaccc tctgcgtcag tgtttaaaac ttctacagtt
      721 ttaccattgt acatgcgtat tatatctccc ggtctatatg atgtagctga cggcatattt
      781 tcaacagcgg gtacaatagc aacgacgttt agtgaaagtt ttaatgatgc tattgctctt
      841 agggtgccaa gaactataca gccaccgcat ttgtcaaatt tcatttcatc catcttatca
      901 cttggcttca gtgaaattcc acccgtatca aaggtaactg cttttccaat tagcagatat
      961 ggtttttgag tgtctgatgc tccattgtat tccaagatta tcatcttagg aggactatta
     1021 cttccctttc caacagcaac tattgctgct aagcctattg attccatttc atacctttct
     1081 ataattcttg ccttcattga atattcattt gcaagtgaca atgcagcgct gcctaaaagc
     1141 gccggattgc attcgtttgg aggaaggttg cataaatcac gcgtaaagtt tactgcttca
     1201 actattgtgc tcgtcttatc tactacaggt tgtaacactg taggttcttc gtttacaagg
     1261 atcgtaactt cgttaacgtt tagcgattgt tcagctctgt ttgtcttgta tcgagcaaag
     1321 gaataaagtg aaagacatat gccttcacac aatgcttcaa ttgagccgtc tcccaaatga
     1381 gaaaatggta aaatagaaaa ctctgctgat gctctttctt ttgcattcaa agctgctttc
     1441 cctccaataa tccttgcagt ttcattagta aatttttcgc ggttaccaag tccgataagc
     1501 ataatttttt tcataggtcc ttttcccatt gtatataaag tgatggtcga accaaaacta
     1561 ccattgaatt ctttattatc aaagatttct ttgattgtgg aggctataaa tggatcaagt
     1621 tcatctaatt gagggaaacc ccgttcattt tcaaaaatac caactactaa aagggaggtc
     1681 tttttttggt taattttcgc cttttcgact ctaatttgaa ccatttaaag actgtgacta
     1741 caactttatt taaaccattg aatagaatac ttttcaatat aagattggct gtttagtctc
     1801 taacaattaa accacgtgta taataatgat ataactaagc tgcatttcaa atgccctttg
     1861 cacaatccat aactcttttc ttggattggc tgaaaaattg aaaatttaca attggaacat
     1921 gacataaaca ttcgcaggca aggcgactcg ggaatgtttg ccagtaatac taaaaatagc
     1981 agtaaataac tctgaatatt tcagtccaaa aacgaaagct tgtgttaaag ctatatgttt
     2041 ttatcctccc tgctccactt tttcatgtaa tgatattaga aatatcagac gattgttatc
     2101 tatatgactt ttaatatgcg atatctggac ttgaaaagga aaatacgaga tgtacgtatg
     2161 ttagcaattc aaggcattgc agaagcaggc tcgggtcacc ctggtgcatc attgtcagca
     2221 gcagaaatta tgggtacctt atactttaga aggattaaac acgattcgtc aaaaccaaat
     2281 tggggagaaa gagactattt tgtagattcg aaagcacatt cggcacctgc atattatgcc
     2341 acattagcag ttgcaggcta tttccccatt gacgaaataa agactttgag aaagattggc
     2401 agtaggctcc agggtcaccc tgtgagatat tcagaacagc aaaaacacca tagcgtacca
     2461 ggaattgaat attcaggagg ctctgagggt ataggtttat ctgtgtctat aggtatcgca
     2521 attgcccata ggcttgatgg caaaaataac cgtgtgtatg ttttgattgg tgatggagaa
     2581 tcaaacgaag gtcaagtttg ggaagcagca atggctgctt ctaaattcaa attagataat
     2641 gttatcgcaa tattagaccg caaccgtata caacaagacg gcttcactga ggatatcatg
     2701 cctcttgatc caatgcgtga caaatggttg gcattcaatt ggaatgtaat tgagatcgat
     2761 ggtcataagg ttgaacaagt catagatgct cttaacaagg caaagcaagt agaagacaag
     2821 cccaccttaa ttatagctaa taccatcaag ggtaacggca tcaaacatat gacgaataat
     2881 ccccaatggc atggcaaggc ccctccaaga aaacataccc cgatattatt ggaagaactt
     2941 gaaagtgaat gtttgattgc gccatcgatt atcgctggag aacgcgaaaa ttatgatgaa
     3001 aagattagaa aggcagagcg cggcggagca gaccttgtac atctagatgt tatggatgga
     3061 agatttgtac caaacacaac gttctcttca aacacgatta gaaaactacg tcatatcact
     3121 agcctcccat ttgatgttca tcttatgatt gagaatccat taaaacatat acaagactat
     3181 attgaagctg gaggtgatat tatcacagtt catgcagagg cttgtgatga aagcgaattt
     3241 gtctctataa atgaatcttt actatccaaa ggaattagcc cagggattgc aattaatcct
     3301 tccacagata ttccagattg gatttattca tatacagaaa atattgatgt tgtaataata
     3361 atgtccgtaa atccaggttt tgcaggacaa aaatttattc cagaagtctt gccgaaaatg
     3421 gtaatgataa acaaaaagct ccgagagcat gggtttaagg ggtatatcga agctgatggc
     3481 ggcattgatg atactacctt gcagcaggtc tatgactcag gtgctagaat acttgttaca
     3541 ggcaatgcag tatatggaag ttcggacatt catggagcaa ttatccaatt gagacataaa
     3601 gcgaatgtag cgttagagag gagacttata gaacatgcaa gtgcgattgg aataagatcc
     3661 gagtggatga agatacgtag acatatattg attcctcttg caaatgagct aggtatagaa
     3721 ggcgaacttc atgcaattga gtagcgagaa aaagacagca gatatgagag gagtctatgg
     3781 agatacgctt gtagagttag gtcgaacata caaggaagta gtttgtgttg gagccgatac
     3841 aacagattcg ctcaagacca agaaatttgg cgacaaatat cctgatagaa tgtttaatgt
     3901 aggaatcgca gaagcgaatc ttgtttccat agcggctgga ttagcaatag ccggtaaaat
     3961 tgcatttgcc agcacgtatg cagcttttct tccaggtaga tgtttggatc aaattcgtaa
     4021 tgccatatgt tatccaaatc tcgatgtaaa gctcgttgtc tcacatgctg gcttgactgt
     4081 aggtcctgac ggagcatcgc atcagcaaat tgaagatttc tcaactatgc gatcaattcc
     4141 aaacattcga ataattgtac ctgcggatgc ggtttccgtg aagcacttga taaaatcaat
     4201 agtgcaaatg cacggtccat tttatgttag actagcaaga ccatctagcg atatccttta
     4261 tgcagaagga tcattattcg aaataggtaa aggaaatatt ttacgtgacg gatcagatgc
     4321 aacgattata tcatgtggat taatggtaac aagatcgttg gaggcagcag atatcttgaa
     4381 aagaaatgaa ggtatttcat gtcgagttgt agatatgttt tcgatcaaac ctgttgatac
     4441 agatctggtg gaaaaatgtg gcagagaaac cggagctatt gcgactgctg aagaacacaa
     4501 tgttattgga ggacttggag gagctgtagc tgaagcatcc gctgagagtt atcctgtccc
     4561 gattaagcgc ataggcattc gtgatacatt cggggaatct gctagggatg aagagatcga
     4621 agcacttctt gaaaagtacg ggttaacgtc tatggaaata gctagagcag taatggaggc
     4681 aagaggtaga agcaaaagat gaaaatattt ctcgatactg ctaatcttga ggccattaag
     4741 ctatacaatg atatggggat cgtggacggc attacaacta atcctaccct tctctcaaag
     4801 gagaaaggga atccagcaga aataatgcag gaaattgtta gaattgtaaa cgggccagtt
     4861 agtttagaag ttatagctac gaggattgat gagatattag atgaagccca taagttaaag
     4921 aaatatgggc aaaacgttat tgtaaagatt ccaatgattc ccgatggtat gaaagcagtc
     4981 aaaaagctaa aagaagaggg aattgaaacc aacgttacac ttatattctc tgcaaatcag
     5041 gcaattctgg cagcaaaggc aggggcatca tatgtaagtc catttatagg aagactagat
     5101 gatgtaggaa acgaagggat gttggttatt aaagaaattg tacagatatt tagaaattat
     5161 gaatttagaa cgcaagttct tgtcgcaagt ataagacacc ctgttcatgt tacagaggct
     5221 gggaaagttg gagcggatgt ggtcacgctt cctccagaca tattgggaaa aatgctattg
     5281 caccctctta ctgataaagg tcttggagca tttctatctg attgggagaa agttaagaaa
     5341 gaaaaccctc gactaacgat ttaatgattt tagcaatgtt agaaagtgac ttatcataaa
     5401 taacagaaga agttgtatat gtgaaatggg ctctttcctt tgtgagccca tttaagaaaa
     5461 atattacaga cattgggaga ataaccaggt caaagagttt gatatgtatt atgcgacaag
     5521 gattcttaga ataagcatat gttactactc cttcctatcg attaattact tctttgttct
     5581 tgtacttgtt cttcgtttat tcagtttaaa tagtattatt cctgcgatac cccatagcat
     5641 tactgcgaaa agtgtctgtt gaaaaaacca agcaacgcca ccagttattg caaaaaacat
     5701 acctaagatt cccatcgcct gtctttgtct gaccaattta atactatttt gttaaaatga
     5761 agtcttataa taattaaaag tcaggctcgc agcagattta tgactttttt aggcatgtct
     5821 tgtaacctgc tgacagcaac tgttttctca tagtttaagt actttagatt atgggttata
     5881 cccacagaat catttaaatt tctacctacc ccaagtgcca ccatttttat tcccatcttt
     5941 ctatatgtca gaaccatttc acggaccgca tcaaaatctg atggttcgcc atcagttaat
     6001 gtgaccatga tatctggctt gaatgatttt gtgacgggaa ttagtaaacc atatatttct
     6061 gcaagtggag tcccaccact tgcctttatc tgca
//
LOCUS       DASQSJ010000064         3580 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_242132, whole genome shotgun sequence.
ACCESSION   DASQSJ010000064 DASQSJ010000000
VERSION     DASQSJ010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_242132"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..325)
                     /locus_tag="VE223_01305"
     CDS             complement(<1..325)
                     /locus_tag="VE223_01305"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HZC20260.1"
                     /translation="MSRLEAIRSNDILHPLSINTVQMASVLLIIHYNYNTPHILLTKR
                     SSTLRSHSGEICFPGGKFAKDDRTLYHTAIRETKEEIGLDFKEKDISGSLEAVRTLTS
                     NYMIVP"
     gene            567..1331
                     /locus_tag="VE223_01310"
     CDS             567..1331
                     /locus_tag="VE223_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20261.1"
                     /translation="MKINYELNPPRILNITYFDISYITREIRHLTRRAEVLNELVAGI
                     HITDSVLGVPRLSSITAASYIKGTGSSLNISCSLRVRDRNLMSLSQFVCDAILVGVKG
                     LLVLAGDEPSDGPKGSGLIPSDVLNILHDRRYSSLLSLDLSVPNKINKKSSIQRKIDA
                     RPRAFVTQSIVSLADLGEIVDIAKPSGINVVACIMVPCKKNISSAKSIGLNWNEYENN
                     PVDFILQAGKIANEVLLTSPNSFSAGLDLLQELKKN"
     gene            complement(1336..2127)
                     /locus_tag="VE223_01315"
     CDS             complement(1336..2127)
                     /locus_tag="VE223_01315"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZC20262.1"
                     /translation="MTKLQIKNVTKKFRRIQADDPEYVTAVENVNLSIDEGGFVCFVG
                     PSGCGKSTLLNILAGLDTPTEGEIILNGRAVKETGPDRIMVFQENALFPWLNVIENVE
                     FGLRMRGVEKKKRNEIAIHYLDMMQLTKFAEAFTYQLSGGMKQRVAIARALVMDPEVL
                     LMDEPFAGLDSQTRDLLLVELQLIWAKTRKTIVFVTHNIIESVCLGDKVVVFTSRPGK
                     VKREIRVDYRRPRLTEDNNLHEYQRKVIDELRTEIISARRMQEKN"
     gene            complement(2249..3430)
                     /locus_tag="VE223_01320"
     CDS             complement(2249..3430)
                     /locus_tag="VE223_01320"
                     /EC_number="2.1.1.213"
                     /inference="COORDINATES: protein motif:HMM:NF014103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanine(10)-N(2))-dimethyltransferase"
                     /protein_id="HZC20263.1"
                     /translation="MSVEKAQEIIEGSTKLLVPASSLTNQVPPKSPAFFNPLAKLTRD
                     ISILAYRAFLQDVNTNKKIFGDALSGVGARALRVAVEVPEINEVYVNDINPLAVDLAK
                     KTAQLNLVAGKCRFSVSEVCKFLLLHHTNNCDRFNIVDLDPFGSPAPYIDCMIRSVID
                     SGLISVTATDTAVLCGVYSDVCFRKYYGRPIRCHYANEIAVRIVLSLISLTASRLGLS
                     IEPVLAHSYSQYIRVYARINLSCTKANKVHQKLGFLYHCHNCGNRTVAEENNKSEFCN
                     LCKYRFKVAGRLWVSTLFDKAFIERMKTFHPKKNGIRAENNDEMNRSILCTCLREDDD
                     IPYYFVTDEVASKLKTSPLSIDKTIEKLSGSGYKASKTVFNTRGFKTDARIKDILDVL
                     R"
BASE COUNT         1078 a          704 c          630 g         1168 t
ORIGIN      
        1 atggcactat catataattt gaggttagtg tcctaacagc ctcaagacta cctgatatat
       61 ccttctcttt gaaatcaagt ccaatctctt cttttgtttc ccttatagct gtatgatata
      121 atgttctatc atcttttgca aatttccctc ctggaaagca tatttcacct gagtgtgatc
      181 tcaaagtaga actgcgcttg gttaataata tgtggggtgt gttataatta taatgaatta
      241 ttaggagaac tgatgccatt tgaacagtat ttatgctcaa aggatgtagt atatcattac
      301 ttcttatagc ctccaggcgc gacaaaatct cttgcctgtt aatcatatct tgttatttgt
      361 agtcatcttg tcaaatccaa cggttataat taaaaattac ggtacattta agcatttgcc
      421 aatagtatga tatgggaaag tagtcataag tttgaggaca tattgtcatg cctaaactct
      481 gaattatatt caattaaaga aggtctattc cagagcaacc tcgcatttaa taaaccgagt
      541 tgcaaatcag aaagttacat actataatga aaataaacta tgaattgaat ccgcccagga
      601 tattaaacat aacgtatttt gatatttcgt atattactcg agagatcaga catttgacta
      661 gacgagcaga ggtattgaac gaactagtag ccggaataca tataactgat tccgtcctcg
      721 gagttcctcg gctgtctagc attactgctg caagttatat aaaaggaacc ggaagctcat
      781 taaatattag ctgcagcctc agagtgaggg atagaaatct aatgtctctt agccaattcg
      841 tttgtgatgc aattcttgtt ggagttaagg gcttgttagt attagctgga gatgagccat
      901 cagatggccc gaaaggttca ggattgatac ctagtgatgt attaaatata ttgcatgaca
      961 gaagatatag ttcgcttcta tctttggatt tatcagtacc aaataaaatc aataagaagt
     1021 cgtcgattca aaggaaaatt gatgctaggc ctcgtgcgtt tgttacgcag tctattgtct
     1081 ccttagcaga tcttggggaa attgtcgata ttgcaaaacc ctctggaatt aatgtggttg
     1141 cctgtattat ggtgccttgc aaaaagaata tatcttctgc aaagagcatt ggtctaaact
     1201 ggaacgaata tgaaaataat ccagtcgatt ttatactgca ggcgggaaaa atagcaaatg
     1261 aagtacttct cacttcgcca aatagttttt cggctggact tgatttgctc caagagttga
     1321 aaaagaatta atatgttagt ttttttcttg cattcttcta gcgctaatga tttcggtcct
     1381 taattcatct atgacttttc tttgatactc gtgcaagtta ttgtcttcgg ttaaccttgg
     1441 ccttctataa tcaactctga tttctctttt caccttgccg ggtctgcttg taaagactac
     1501 aaccttgtct cctaaacata ctgattcaat tatattgtgt gtaacgaaaa caatagtctt
     1561 cctagttttt gcccaaatta gctgtaattc tactagaagc aagtctctag tttgagagtc
     1621 tagtccagca aaaggttcat ccattaaaag cacctctgga tccattacaa gcgccctagc
     1681 aattgcaacc ctctgcttca ttcctcctga taattggtat gtaaatgctt cagcaaactt
     1741 tgtcaactgc atcatgtcaa gataatgtat ggctatttcg tttctctttt tcttctcaac
     1801 acctctcatc ctgagaccaa attctacatt ttcaataaca ttgagccatg gaaacaacgc
     1861 attttcttgg aataccatga ttctatcagg gccagtctcc ttcaccgccc gcccatttaa
     1921 aataatctct ccttcagtag gagtatctaa tcccgccagg atattaagta gagtagattt
     1981 accacaacct gaaggaccta caaaacagac aaaaccacct tcgtctatcg agaggtttac
     2041 attttcaact gctgtcacgt actcgggatc atctgcctgt attcgtcgaa acttcttggt
     2101 aacattcttt atctgaagtt tagtcaatgg gcgaagaagt taaatgtcta aaccctgaat
     2161 ttaatcttat gctcagctga aatacagtca attcgacata taattagaaa aatgcactct
     2221 actcatgaag tttctcatta agcttatttt accgaagaac atctaatatg tcttttattc
     2281 ttgcatctgt tttgaatcct cgtgtattga aaactgtttt tgaagcctta tagccagatc
     2341 ctgataactt ttcaatagtt ttgtcgatag aaagagggct agtttttaat ttactagcga
     2401 cttcatccgt aacaaaatag taaggaatat catcatcctc tcttaggcat gtgcataaga
     2461 tagatctatt catttcatca ttgttttctg cacgtatacc gtttttctta ggatggaacg
     2521 tcttcatcct ttcaataaag gccttatcaa atagtgtgga tacccatagc cgccccgcaa
     2581 ccttaaatct gtatttgcat aaattacaaa attctgattt attattttct tccgccactg
     2641 tcctattccc acaattatgg cagtggtata gaaatcctag tttttgatgt actttatttg
     2701 ctttggtaca gcttaaatta attcgggcat atactctaat atactgtgaa tagctgtgag
     2761 caagtaccgg ttctatgctt aatcctaacc ttgaagcagt caaacttatt aacgacaaca
     2821 cgatacgaac tgctatttcg tttgcataat ggcatctgat tggcctgcca taatatttac
     2881 gaaaacaaac gtcactatat actccacata atactgctgt gtcagttgca gtaacagata
     2941 tcaaaccaga atcaataaca gatcttatca tacagtcaat atatggagca ggggacccaa
     3001 acggatccaa atcaactata ttgaacctat cgcaattgtt tgtatgatgc aataaaagaa
     3061 acttgcatac ctcacttacc gagaatctac attttcctgc aacaagattt aattgtgcag
     3121 tctttttcgc taagtctact gcaagcggat ttatgtcatt tacgtaaact tcgttgatct
     3181 ctggcacctc gactgcaact cttagagctc ttgcaccgac tccgctcaat gcgtcgccga
     3241 atattttttt gttcgtgttt acgtcctgaa ggaatgccct atatgcaagt attgatatat
     3301 ctcgagtcag tttagccaaa ggattgaaga aagccgggct cttgggtgga acttgattag
     3361 tgagtgatga cgctggaact agcaatttgg tactcccttc aataatttcc tgtgcttttt
     3421 ctaccgacaa aatcttgagg acaaaacagt aaaccgtttt caaaaatata aatgaacaac
     3481 ctgattaaac caaatcgata ataagtacct gatgtctaag agatctcaaa aggacaaagt
     3541 gcggttgcat aatacaaagg aaggtgtatt gataggggga
//
LOCUS       DASQSJ010000065         4267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_326059, whole genome shotgun sequence.
ACCESSION   DASQSJ010000065 DASQSJ010000000
VERSION     DASQSJ010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326059"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..774)
                     /locus_tag="VE223_01325"
     CDS             complement(154..774)
                     /locus_tag="VE223_01325"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF011463.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex kinase/ATPase Bud32"
                     /protein_id="HZC20264.1"
                     /translation="MQDKRLLIKRGAEADIYLIQWYNKKAISKVRIPKPYRHRSLDNE
                     IRKYRTIHEAAMSSAAKEAGIISPFIYFTDPFQAEIIMEFIQGKSVKDVLTPQLSYKM
                     GVYTALLHTNNIVHGDLTTSNFIASKKVVLIDFGLSYYSTRIEDKAVDIRLIRQVFSS
                     AHTPLYKDVYESFIEGYLTVVDKKKMHRILESVSEIEQRGRYARVI"
     gene            811..1140
                     /locus_tag="VE223_01330"
     CDS             811..1140
                     /locus_tag="VE223_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20265.1"
                     /translation="MSSAEPRQGERMILQEDCAEDKLKNGILTLTNQRIIFEETEGTM
                     ATLSKKMGNIVLDISLDKIDSVKTEGFLVKKVVISIDNKLYKFGVFSTGKWAKAIENQ
                     INADKIG"
     gene            complement(1148..2155)
                     /gene="kae1"
                     /locus_tag="VE223_01335"
     CDS             complement(1148..2155)
                     /gene="kae1"
                     /locus_tag="VE223_01335"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061711 - N(6)-L-threonylcarbamoyladenine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex N(6)-L-threonylcarbamoyladenine
                     synthase Kae1"
                     /protein_id="HZC20266.1"
                     /translation="MLCLGIESTAHTFGCSVLEFSSNGNTGQLLSDIRESYIPPEGMG
                     IHPREASRHHAETSSAILKQSLQKADILIKDIDVIAYSAGPGLGPCLRIGAVVARTLA
                     AFYKKPLVPVNHALGHIELGAMLTGASDPLVLLVSGGHTMIMAFSGNRWRVFGETLDI
                     TIGQLLDQFGRAMGFASPCGSKIEQLANQSSKSYLHFPYVVKGNDVSLSGLLTTATRL
                     ALNTSNALPDICYSLQETAFAMITETIERAISFTGKKQTMIVGGVAANKRLAEMLESA
                     CKRLDVNLFVCPIRFAGDNGAQIAWTGILDYVTTKKQVSIEKSFIRQSWRVDTVNVSW
                     R"
     gene            complement(2164..3366)
                     /locus_tag="VE223_01340"
     CDS             complement(2164..3366)
                     /locus_tag="VE223_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HZC20267.1"
                     /translation="MLIGLIGKANVGKSTFFNASTELAVQTANYPFTTIRANFGVAYT
                     RVKCVCRDFGVQDNPIHSMCIDGNRFIPVKLIDIAGLVRGAHAGRGLGNKFLDDARQA
                     DALIHVVDASGSTDSEGKPVTVGMGDPLSDIKFIEDEFDYWLAAIVSRDWTRLARDTE
                     AQGQKLEQVLAKRLSGLAIADIYIIKALDEMGFRNKKATLWNEEDIFDFCKKVRSKAK
                     PIVIAANKADLPSAEATIMKIRNLGRDVIPCVAEAEIVLRRAARKGMLYYLPGDNSFD
                     IKPGILLNEQQKKALETIHSLLAKYGSTGIQEVIDLACFRLLKMIVVYPVEDELKLMD
                     KKGNVLPDARLLPDGSTAKDLANTIHADLGKGFLYAIDAKRKQRLGAEYKLKNNDVIK
                     IVSATSKS"
     gene            3659..>4267
                     /locus_tag="VE223_01345"
     CDS             3659..>4267
                     /locus_tag="VE223_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20268.1"
                     /translation="MAGIVAIYDLVPQIDKSIIYYLSHSMRMLQHRGKAYWKMIVGKG
                     IAQREGSLPSDADILKMAKEEKLYGNNGIGYLSKRSPQFHSMNTIDVVLDGFFVDTEK
                     LHLHPYIGTAKQSDSLFKIYHIFTKLLLENQDPELGAEFLDRHLRGNLIMKINDDIYA
                     YRNSTGFKPLVAATNKNKTLYIIASENSLRTSFIDMEFNDVRP"
BASE COUNT         1320 a          840 c          735 g         1372 t
ORIGIN      
        1 ttctctggag actcggattt tcttacaatg attttttatt catgttttct acgagtagga
       61 ggtcttatgg ttagaatatt ttttcttatc gaatgtttaa cttcttgtca aatgcaacca
      121 actttattaa ttagctctta acatcaaatt ctattaaatc actcttgcat accttccacg
      181 ttgctcgatt tctgagacgc tttccaaaat cctatgcatt ttctttttgt ccactactgt
      241 caaataacct tctataaagc tttcatatac atccttatag agaggcgtgt gtgcactact
      301 aaaaacttgt cttattaatc taatatctac tgctttatct tctattcgtg tagaataata
      361 ggataaacca aaatcaatta acactacttt tttacttgca ataaaattag aagtcgtaag
      421 atcgccatga acgatattat tagtatgaag caatgcagta tagacgccca ttttatagga
      481 taattgtggt gttaatacat cctttacgct ctttccttgt atgaactcca ttataatttc
      541 agcctgaaaa ggatctgtga agtaaataaa aggtgaaata ataccggcct cttttgctgc
      601 agaagacata gcggcttcat gaatggttct gtatttgcga atttcattat ctaaagatct
      661 gtgacggtat ggtttgggga tcctaacctt tgaaatcgct tttttgttat accactgtat
      721 taggtaaata tcagcttcgg cacctctttt tattaatagc cttttatctt gcaatagtaa
      781 tatatctttg aatcaaagga taaataccat atgagttctg ctgaacctag gcagggagaa
      841 aggatgattt tacaagagga ttgtgctgag gacaaattaa aaaatggcat actaacgttg
      901 acaaaccaga gaatcatttt cgaagagaca gaaggaacga tggcaacttt gtcaaaaaag
      961 atggggaata tagttttaga tatttctctt gataaaatag attcggtgaa aaccgaaggg
     1021 ttccttgtaa aaaaagttgt aatttctata gataacaagc tttacaaatt tggtgttttt
     1081 agtactggca aatgggcaaa agcaatagaa aatcagataa atgcagacaa aatcggctag
     1141 ggatttatta tcgccaacta acattgaccg tatcaactct ccatgactgg cgtatgaacg
     1201 acttttcaat gcttacttgc ttttttgttg taacataatc gagtattcct gtccaagcta
     1261 tctgtgctcc attatcacct gcaaatctaa ttggacatac aaacaaattt acatccaatc
     1321 tcttacatgc gctttcgagc atttcagcaa gtctcttatt tgctgcaacg cctcctacta
     1381 tcattgtttg ttttttacct gtgaacgaaa tcgctcgctc tatagtttct gtgatcattg
     1441 caaatgctgt ctcttgtaat gaataacata tgtctggcag tgcattactt gtgtttaaag
     1501 caagccttgt tgcagtagta agcaagcccg aaagtgatac atcatttccc ttaactacat
     1561 atggaaagtg taaataactt ttagatgatt gatttgcaag ttgttctatt ttactaccac
     1621 atggtgaggc aaaacccatg gctcttccaa actgatcaag caactgtccg atcgtaatat
     1681 caagtgtttc accaaatact cgccacctat ttcccgagaa tgccattatc atagtatggc
     1741 ctcctgagac taacagaacc aatggatcag aagcgcctgt cagcattgcc cctaattcga
     1801 tatgtcctag agcatgatta actggtacaa gtggtttttt gtaaaacgcg gcaagggttc
     1861 ttgcaactac agcgcctata cgaagacaag gtcccagtcc agggcccgca gaataagcga
     1921 taacatctat atctttgatc aatatatctg ctttttgtag tgactgcttc aaaatagctg
     1981 atgatgtttc agcatgatgc cttgaagcct cacgaggatg aattcccatg ccctccggtg
     2041 gaatatatga ctcacgtata tctgatagta attgtcctgt gttcccatta gaagaaaatt
     2101 ccaagacgga gcatccaaat gtgtgagctg tgctctctat tccaagacac aacatatatt
     2161 acattagctc ttgctggttg cagaaactat tttgataaca tcgttgttct taagcttata
     2221 ttctgctccc aatctttgtt ttcttttggc atcgatagca tataaaaaac cctttcctag
     2281 atcagcatga attgtgtttg ctaaatcttt tgcagtagac ccatcgggca gcaaacgtgc
     2341 atctggtaat acattacctt ttttatccat taatttaagc tcatcttcaa caggataaac
     2401 aacgatcatt ttcaatagtc tgaaacatgc taggtcaata acttcttgta ttccagttga
     2461 tccatatttt gcaagtaatg aatgtatagt ctcaagagct ttcttttgct gttcatttag
     2521 caaaattcct ggcttaatat caaatgagtt atctcctggc aaataatata acatcccttt
     2581 tcttgctgct cttctgagca cgatctctgc ttctgctaca catggaataa catctcgacc
     2641 aaggtttctg atcttcataa ttgtagcctc tgcggagggt aaatcagctt tatttgctgc
     2701 aattacaatt ggtttagctt ttgatctaac ctttttacaa aaatcgaata tatcttcttc
     2761 attccaaagt gttgctttct tattacgaaa tcccatttca tccagagctt tgataatata
     2821 aatatctgca attgcaagac cagataaccg tttagcaagc acctgttcca gtttttgccc
     2881 ctgagcctct gtatcccttg caagcctagt ccaatctcta ctgacaatag ccgcaagcca
     2941 ataatcaaat tcatcttcta tgaatttaat gtcagataat ggatctccca tacccacagt
     3001 gactggttta ccctcgctgt ctgtagaacc agatgcatcc accacatgaa taagagcatc
     3061 tgcctgtctt gcatcgtcca gaaacttgtt tcctagaccc cttcctgcgt gagctccccg
     3121 tacaagcccc gctatatcaa tcaatttaac aggaataaat cgattgccgt cgatacacat
     3181 tgaatgaata gggttatcct gaactccaaa atctctacat acacatttga ctcgtgtata
     3241 ggctactccg aaatttgcgc gaatggttgt aaatggatag tttgcagtct gtactgcaag
     3301 ctcagtagat gcattaaaga aggtggactt gcctacattg gctttgccta tcagaccaat
     3361 aagcataata catacgtagg tttaaaaccc gcattaattt ctttcaagcc tcaatgttct
     3421 tcttacatga tcctcacaaa catagccagc ctttataatt tacaagtaat aaaacgatat
     3481 gtacatattc tttcaatata aaaaaagggc ataaaccaga aatgtgatca gtcagctaaa
     3541 tgtgtttgct tcagatatgc atagtgagac tattatttag aaggtggtta aataagaagg
     3601 agcctaatta accgataaga tttttatttc ttcaggaaag atagaatccg aagcagaagt
     3661 ggctggaata gttgctatat atgatctagt accacaaata gacaagagca ttatttacta
     3721 tctttcacat tctatgcgca tgctccaaca tagggggaaa gcctattgga aaatgatagt
     3781 aggaaaagga attgcacaaa gagaaggatc acttccatct gatgccgata ttttaaagat
     3841 ggccaaggaa gaaaagttat atggcaataa tggaataggg tatctttcca agagatcgcc
     3901 acagtttcat agtatgaata caatagatgt tgtcctagat ggtttttttg tagatacaga
     3961 gaaattacat ttacatcctt atataggaac cgccaaacag tcagactctc tctttaaaat
     4021 ttatcatata tttacaaaat tactactcga gaaccaagat ccagaactgg gtgctgaatt
     4081 cttagacagg catttacgcg gaaatctgat tatgaaaata aatgacgaca tttatgctta
     4141 tagaaatagc actggtttca aaccacttgt ggccgcgacc aacaagaata agacattata
     4201 tattatagcc tcagaaaatt cattacgtac ttcgtttatt gacatggaat ttaatgatgt
     4261 tagacca
//
LOCUS       DASQSJ010000066         4341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_445271, whole genome shotgun sequence.
ACCESSION   DASQSJ010000066 DASQSJ010000000
VERSION     DASQSJ010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_445271"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..439
                     /locus_tag="VE223_01350"
     CDS             194..439
                     /locus_tag="VE223_01350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20269.1"
                     /translation="MVGDDDIAVTTALSLLSKRLPYVSLFAAVLRASDYNTKRGLDLF
                     CPILASTLSCREYTTPSGPMTMGVGDGHRSGTGVLYV"
     gene            466..594
                     /locus_tag="VE223_01355"
     CDS             466..594
                     /locus_tag="VE223_01355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20270.1"
                     /translation="MVRVAEFEAGVIFVQSPVKIGEKNSLGTNSVTVKEPGPNITV"
     gene            787..1410
                     /gene="pyrE"
                     /locus_tag="VE223_01360"
     CDS             787..1410
                     /gene="pyrE"
                     /locus_tag="VE223_01360"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HZC20271.1"
                     /translation="MGIVGEQTMPSYDKKRRKLMEIIQKNAIVFQDVQLFSKIKSQYY
                     YDIKRISLQKEGAHLLAELLLSEIYKYGPKSVGGMEMGAVALVTAVVFKSTMDGKYEK
                     GLNGFFIRKEAKGYGLQKRIEGNMIPPVVIVDDVITSGKSVMDSIEAVNAEGVTPKGV
                     VCVIDREEAGTPNVLKQNNIKYSSLFKHSEFRPFIEQKLEEKRRAAK"
     gene            1630..1839
                     /locus_tag="VE223_01365"
     CDS             1630..1839
                     /locus_tag="VE223_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20272.1"
                     /translation="MTSGDILRAIPQERDYPDPQTLLVPPSPSSQQPSPLVTISDLLP
                     GKYVSTTARIVYLRTIEDKMLLELR"
     gene            2047..2232
                     /locus_tag="VE223_01370"
     CDS             2047..2232
                     /locus_tag="VE223_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20273.1"
                     /translation="MAAACLAIFAIFAGVLASLYGLDWYKNRKQNRRLARKVEEEDHI
                     AKEPLTEQLAYLVSINY"
     gene            2520..2837
                     /locus_tag="VE223_01375"
     CDS             2520..2837
                     /locus_tag="VE223_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20274.1"
                     /translation="MQYHKAAILGQERARKAQMKLFEYAGFAMLTYTIKQQKTGFEPV
                     GEEMLIGKMVRPNEAMLFICDKDGYAKAQSKPLSLEKGQQIYKKMIKDGMTEFKGNIK
                     TVS"
     gene            complement(2821..3537)
                     /gene="pyrH"
                     /locus_tag="VE223_01380"
     CDS             complement(2821..3537)
                     /gene="pyrH"
                     /locus_tag="VE223_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HZC20275.1"
                     /translation="MNKSRIIHKNRIVIKLSGSIFSYEAREISIKKYAQMLSHIDKKI
                     QPVIITGGGVIARHYINLARNLGSDEASLDIMGIEVSRLNAKLLIAALQDLAYSQVPI
                     DLENVAIAVESGKIVVVGGLHPGQSTNAASALIAEKVKASTFLNATDVNGIYDSDPNT
                     NKKAKLFKEITVKECMDILGRESSMAGTYDLMDIVALKVIERSNIPTRILRSDVTNIK
                     NAINDKSSIGTEIITVKKQF"
     gene            complement(3530..>4341)
                     /locus_tag="VE223_01385"
     CDS             complement(3530..>4341)
                     /locus_tag="VE223_01385"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20276.1"
                     /translation="ISFGESKIKFFNEIIAGGLSADLMDYLPRDGLFTGVEYGKIDYH
                     RLVSSLEVVSNGHLAINRSALYSFESMLISRYEMFKAVYFHKTVRSAEVMLLNSMELA
                     DEHLNLTDTSIDNYQNLTDEVMLERICSLKNSNKIAVKLATDYRSRKLLKCVYEKFVH
                     KRDRLYSKMDRQALHNLGIQIAETAEVKEKSVFVDASRAPSMPLTPTKKEINSVLLVD
                     KDRAYETPVSEIPLIDSITGFLDMLRVYTTAENRNVVEQSIKKVVRNEDYE"
BASE COUNT         1425 a          750 c          811 g         1355 t
ORIGIN      
        1 acctgctatc attgcttact tttattgaac tattacaagc gataaaagag gttgtaatgg
       61 ctaatgagta tatgtcataa aatctgaaat ggtactttgc ttcggatctt gaatgctact
      121 attatgtaag tatggtttgt cttcttcctc atccttgttc tcctcattac tccatgtagc
      181 ttcctgtaat cctttggtag gagatgatga tattgctgta actacagcac tgtcactctt
      241 atcaaaaaga ttaccatatg tttctctgtt tgccgctgtc cttagagcct ctgattataa
      301 cacaaaaagg ggtctggatc ttttttgtcc cattctagca tctactttaa gctgtcgcga
      361 atacactaca ccaagcggtc caatgactat gggtgttgga gatggacatc gatcaggtac
      421 tggtgtttta tatgtttaag atataacaaa ttagcaattg cacctatggt acgagttgct
      481 gaatttgagg caggggtgat tttcgtacaa tcaccagtga aaataggaga aaaaaattcc
      541 ctgggaacta attcagttac tgtgaaagaa cctgggccca atataacagt ttgaatagga
      601 tcaagtggta cacaaagagg gaatgaagat ggttgagggt tattgcctgc aacatgtatc
      661 aattaattct atgtatagca atcaggagaa taagcgggtg gaatttgtca gaactatgta
      721 tgaatgacta atccgaagca atcctagaag tatacttata tctaactgct atatatcttc
      781 atataaatgg gcatagtagg agaacaaaca atgccctctt atgataaaaa aagacgtaaa
      841 ttaatggaaa taattcagaa aaacgccata gtattccagg acgtacaatt attttcgaag
      901 atcaaatctc agtactatta tgatataaaa cgtatatcac ttcagaaaga gggagcacat
      961 cttcttgctg agttactgtt atcagagata tacaaatacg gtccaaaatc agtaggtgga
     1021 atggagatgg gtgcagttgc actggtaact gctgtggtat ttaaaagtac aatggatggc
     1081 aaatacgaga agggcctaaa cggatttttc ataaggaaag aagctaaagg ttatggatta
     1141 caaaagagaa ttgaaggaaa catgattcct cctgtggtga tagttgatga tgtaatcact
     1201 tcaggtaaaa gtgtgatgga ttcaatagag gcagttaacg cggaaggagt cacaccaaaa
     1261 ggagtggtct gtgtgataga tagagaagaa gcgggtacac caaatgtgtt aaaacaaaac
     1321 aatatcaagt attcttcact gttcaaacat tctgagttca ggccatttat agaacaaaaa
     1381 cttgaagaaa agagacgagc ggcaaaataa gaacataatt ttatgcgtaa gaaacgaacc
     1441 tgaagccagt gcatcttcta agaggtctgc aagttctgct tttatctgtt tgaggtatcc
     1501 atactactgt tattactatt ggcattgatt tggttttcct gttgagtcag aaagtagaaa
     1561 atgttgatga tgaagagaag acaatggggc gtagagagta acgattcggg gtggtagtaa
     1621 tataataata tgacttctgg cgacatatta agagctattc ctcaggaaag agactatcct
     1681 gacccacaga cacttctagt accaccatca ccatcttccc agcagccaag tcctcttgta
     1741 acaatatctg atctactccc aggaaaatat gtttcaacca cagcaagaat agtctattta
     1801 aggaccattg aagacaagat gctcttggaa ctaagatgat attctctgga ataatagaag
     1861 agtacattgc taaatcattt aatgatatat gcaaggaaaa taatattaca accatacagc
     1921 aagccttaac atgtaagcag atatggagtt tcgataatgg attatctttg tgttatggct
     1981 gtcataagaa tttagaaaaa gagtgaaaat aaggaaattt ttgtataaca catctaataa
     2041 taggttatgg cagcagcatg tttggctatc tttgctattt tcgcaggagt actggcgtcc
     2101 ttatatgggt tagattggta taaaaataga aagcagaata gaagattagc tagaaaggtg
     2161 gaggaagaag atcatattgc gaaagaacca cttactgaac aattagccta tctggtatct
     2221 atcaactatt gatctagtac acatagtaat gtatttcata caaaaagata ttgaagcagc
     2281 gatacagaaa ggtatcaact atgatccaga gtcagaagta aaacagaatg acgaccagag
     2341 ctaagtgttt cctatcgcat acatttttat ggtccagaaa cgcaatcaaa caatagatga
     2401 atactagtat tcaattatac acaacaataa tttccgttcc tcaagtggtt ggttttgatc
     2461 aacgattagt aatattgtct atggtctatc cttaccttaa gtaagaattg ttaaaagtta
     2521 tgcaatatca taaggcagct attttgggtc aagaaagagc tagaaaagcg cagatgaagc
     2581 tatttgagta tgcaggattt gcaatgctaa cttatactat caagcaacaa aagacaggat
     2641 ttgaacctgt aggagaagaa atgcttattg gtaaaatggt caggcctaat gaagcaatgt
     2701 tatttatctg tgataaagat ggctatgcaa aggcacaatc aaagcccttg tcattagaaa
     2761 aaggacagca aatttataaa aagatgataa aagatggaat gacagaattt aaaggcaata
     2821 tcaaaactgt ttcttgactg ttatgatttc agtacctatt gaagatttgt cattaattgc
     2881 atttttgata ttcgttacat ctgatcgcaa aattcgggta ggaatattcg aacgctctat
     2941 cacttttaga gctacaatgt ccataagatc atatgtccca gccatagagc tttccctccc
     3001 aagaatatcc atacattcct ttactgttat ttctttgaat aattttgctt ttttgttagt
     3061 atttggatct gaatcataaa taccattgac atcagtagca tttagaaagg tcgatgcctt
     3121 tactttttca gctatcaatg cagaagcagc gttagtactt tggccaggat gtaaaccacc
     3181 tacaaccact attttaccac tttccactgc tattgctaca ttttcaagat caattggaac
     3241 ttgtgaatat gccagatctt gtagagctgc aatcaacaac tttgcattca atcgtgacac
     3301 ctcgattccc ataatatcaa gacttgcttc atcagagccg aggtttcgag ccagattaat
     3361 ataatggcgt gcaattacac caccgcctgt gataatcaca ggttgtatct ttttgtcaat
     3421 atggcttagc atttgagcgt attttttgat tgaaatctcg cgtgcttcgt aactaaatat
     3481 actgccactt aacttgataa ctattctatt cttatggatt attctacttt tattcatagt
     3541 cttcattgcg gacgaccttt ttaatagatt gttctacgac atttctgttt tcagcagttg
     3601 tatatactct caacatatcc agaaagccag ttatcgaatc tataagagga atttcagaga
     3661 caggtgtttc gtatgcacgg tctttatcta caagtaacac agaatttatt tcttttttag
     3721 tgggagtcag tggcatagat ggagctcttg atgcatcaac aaaaacagac ttttctttca
     3781 cttctgctgt ctcagctatt tgtattccca aattatgtaa tgcttgccta tccattttac
     3841 tatataacct atcacgctta tgaacaaatt tctcatacac acattttaat aatttcctac
     3901 tcctgtagtc tgttgctaat ttgactgcaa ttttattgct attcttaagt gaacatatac
     3961 gttctagcat aacttcatca gtcagatttt gataattatc tattgatgtg tctgttaaat
     4021 ttagatgttc atcagccaat tccattgaat ttaataacat gacttctgct gatctcacag
     4081 tcttgtgaaa atagactgcc ttgaacattt cgtaccttga gattaacatt gactcaaatg
     4141 aatacagcgc agatcgatta atagctaggt ggccattaga cactacttca agcgaactta
     4201 ccaatctgtg ataatcaatt ttgccatact ctactcctgt aaataatcca tctcttggta
     4261 aataatccat cagatctgct gatagtccac cagcgataat ctcattgaaa aacttgattt
     4321 tcgattcacc aaatgatatc t
//
LOCUS       DASQSJ010000067         3096 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_166790, whole genome shotgun sequence.
ACCESSION   DASQSJ010000067 DASQSJ010000000
VERSION     DASQSJ010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_166790"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..773
                     /locus_tag="VE223_01390"
     CDS             <1..773
                     /locus_tag="VE223_01390"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZC20277.1"
                     /translation="TMPTRKKTSYQKYFDLARTAYIHMLKKTTVLSNSEFSRSVILKA
                     FGVDSMVLSPPVDVDFFRNMSLLSSSSSSNRKDTILVIARFHPTKKIENAIRLAKLLK
                     ERKIGCRMRIVGNLPAGTPGYLFYLKQMVDQYDLDDYVKFEINVNFGKLLKLMRESKV
                     YLHPLVGEPFGISTVEAMSSGLIPVVPSIGGHTEFVPSKYQFRTFGEGVEAISVALMA
                     PDSERMIISDSVKRFSIDSFISRFQELVKNIISSKIKS"
     gene            973..1620
                     /locus_tag="VE223_01395"
     CDS             973..1620
                     /locus_tag="VE223_01395"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HZC20278.1"
                     /translation="MRLKDYEINPALIVTDVQNGFVSKGGSYDLLGMEVSRYKEVIPK
                     IRDLIIMCRNARIPVFYTQAVREASGIDLLTKTHKILPKSREERIMKRPICIRGTWDA
                     DIVEDIKPIEGDHVVIKRRDSAFHDTEIGVWLRSIGVDTLIFCGIDTSICVETSLRDA
                     FNLGYDVILVSDATASSNRKHYESTLENVKDYYGIVIELGELFNYLSVYISQYSK"
     gene            complement(1696..2802)
                     /locus_tag="VE223_01400"
     CDS             complement(1696..2802)
                     /locus_tag="VE223_01400"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20279.1"
                     /translation="MTATDKRHQEVVKKIKLIMRDVSKDIITEKTMPVLDVPKVGYDN
                     TVWSDGKRMLTIGKKTVQVSPDSTKKIPTFAQYIVMASAIRRLLDEEMESTIRGMYYA
                     TLSTVGDEKNKQKFWNSQENSDDAIKAVELLTGIPREEFSVTSKPKGMVSGPITLRVG
                     GDIIDCNLGSKATSQLIPTNIRDVEIVNVKADFVMVVEKDTVLNNIRKSGFIQKYNAI
                     LLTGSGEPDRATRMMVKTLNEEWKKPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VTPDAKVLGMLFSDIYEYNIPEVARLTASDEDINRANDMKKKPWLQDKQWQKELNLFL
                     QRKEKCELDAFFKHGFKYLAETYLPQKLREANMI"
     gene            complement(2803..>3096)
                     /locus_tag="VE223_01405"
     CDS             complement(2803..>3096)
                     /locus_tag="VE223_01405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20280.1"
                     /translation="LSEAFTRIAERHVRGEINYPIAERQDKITGERIDGEIHETTEVE
                     DKILISKMAQDNQHEEKNRKTERKNQHPNKNNAQRKVQTTLDILNSQKKTRRK"
BASE COUNT          915 a          593 c          560 g         1028 t
ORIGIN      
        1 ccactatgcc tactcggaaa aaaacttcct atcaaaaata ctttgactta gctcgtactg
       61 cttacataca catgttgaaa aaaactacgg tactttcaaa ctccgaattc agccgaagtg
      121 taatactaaa agcgtttgga gtagattcta tggtgttaag tccacctgtc gacgtcgatt
      181 tctttcgtaa tatgtcatta ttgtcatcat cttcatctag taatagaaaa gacacgattc
      241 ttgttatagc taggtttcat ccaaccaaga aaatagaaaa cgcaatcaga ctggcaaagt
      301 tgttaaaaga acgcaaaatt ggatgcagaa tgagaatcgt tgggaatctg ccagctggca
      361 ctccaggtta tcttttttat ctaaaacaaa tggtagatca atatgaccta gatgattatg
      421 ttaaatttga aattaatgta aattttggca aattactcaa attgatgaga gaatccaaag
      481 tatacctcca tcctctcgta ggagaaccat tcggaatatc tactgtggag gcaatgagct
      541 ctggtttgat cccagttgta ccaagcatcg gaggacatac tgaatttgta ccttcaaaat
      601 atcaatttcg tacctttggt gaaggagttg aagcgatcag tgttgcgctg atggctcctg
      661 attcagaaag aatgataatc agcgattcgg ttaaaagatt ttctatagac agttttatta
      721 gtcgttttca agaacttgtc aaaaatataa ttagtagcaa aatcaaatct tgatctcaat
      781 ttaaaggcag ttttcttatc cttgcgttac acctagcatt gtgtaatggt gaattacaca
      841 agttaacaac aacaaatgag atagatataa aaattcgatc tgttgacgtg atctaaaatt
      901 acttcctttg gatattttgc ttctcaaatg tagtataatc ttataaacca tcacaaaata
      961 ttagatagta taatgaggtt aaaagattat gaaatcaacc ctgcactaat agtaacagat
     1021 gtccaaaatg gctttgttag caaaggcggt tcatatgatc ttttaggaat ggaagtttct
     1081 cgttacaaag aggtcatccc taagattcgc gacctgatta taatgtgtag gaatgcccgg
     1141 atcccggttt tttatacaca ggctgtaaga gaggcttcag gaatcgatct tttaaccaag
     1201 acccataaaa ttttgccaaa atcaagagag gaaagaataa tgaagagacc tatctgcata
     1261 agaggaacat gggatgcaga tatagttgaa gatattaaac caatagaggg agatcacgta
     1321 gtaataaaaa ggagagattc agcttttcat gacacagaga taggtgtctg gttaaggagc
     1381 atcggagtgg atacgctgat cttctgtggt attgatacat cgatctgtgt agagacttca
     1441 ttaagagacg cgtttaactt gggatacgat gtaatacttg tttctgatgc aacagcatca
     1501 agcaatagga aacactacga gtccacgctt gagaatgtga aggattacta tggaatcgta
     1561 atagagttgg gagagctatt taattatctg tcggtataca taagccaata ctctaagtaa
     1621 ataagtaaaa tcatatgtta gataccatta gcaggacatc ttgggtcaaa tcaaatagtc
     1681 aaaatatata atattctaaa tcatattggc ttctcgcaac ttttgaggca aataagtttc
     1741 tgccagatac ttgaatccat gtttaaaaaa tgcatctaat tcgcatttct ctttacgttg
     1801 caagaataga tttaattcct tctgccattg tttatcctgc aaccaaggtt tctttttcat
     1861 atcgtttgct ctattaatat cttcatcaga tgcagttaac ctagctactt cggggatatt
     1921 atattcatag atatcagaga ataacatacc cagtactttg gcatcaggag taaccagtct
     1981 atcactatca tagctaagtg actcactacc gatcttataa cgaagtgcga tacccaaacc
     2041 ccaaggatcg gcatctgcaa agattaccac tggttttttc cactcctcat ttagcgtctt
     2101 aaccatcatt ctcgtagctc tgtcaggctc tccggatcct gtcagtagga ttgcgttata
     2161 tttttggatg aacccggatt ttcgaatatt attgagaact gtatcctttt ccaccaccat
     2221 tacaaaatct gcttttacat ttacaatttc aacatcgcga atattggtag ggattaattg
     2281 tgacgttgcc ttacttccca agttgcagtc aatgatatca ccgcctacac gcagagtaat
     2341 aggacctgaa accatccctt ttggtttgga tgtaacagaa aattcctctc taggtattcc
     2401 tgtaagcaac tccacagctt tgatcgcatc atcagaattt tcttggctat tccagaactt
     2461 ttgtttgttc ttttcatcgc ctacagtgct gagtgtagca tagtacatcc ccctgattgt
     2521 actttccatt tcctcgtcaa gtaatcttcg gattgcactg gccataacta tgtattgggc
     2581 aaaggtgggg attttttttg tactatccgg acttacctga accgtctttt ttcctatggt
     2641 aagcatcctc tttccatcgg accaaacagt attatcgtaa ccgactttag gaacgtctaa
     2701 aactggcatt gtcttttccg ttattatatc cttgctaaca tctctcatta tcagtttaat
     2761 ttttttaaca acttcttgat ggcgcttatc tgtagctgtc atctattttc tccttgtctt
     2821 tttctggcta tttaggatat ccagggtcgt ctggactttt cgctgagcat tgtttttatt
     2881 tgggtgttga ttctttcttt cagttttcct gttcttttct tcatgttgat tatcctgagc
     2941 cattttgctt atcaaaattt tatcttcaac ttcagttgtt tcatgtatct ccccgtcgat
     3001 tctttctcct gtaattttat cctgtctttc tgcaataggg tagttgatct ctcctctgac
     3061 atgtcgttct gcaatccttg taaatgcttc ggaaag
//
LOCUS       DASQSJ010000068         5679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_206917, whole genome shotgun sequence.
ACCESSION   DASQSJ010000068 DASQSJ010000000
VERSION     DASQSJ010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5679
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_206917"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..531)
                     /gene="hemC"
                     /locus_tag="VE223_01410"
                     /pseudo
     CDS             complement(1..531)
                     /gene="hemC"
                     /locus_tag="VE223_01410"
                     /inference="COORDINATES: protein motif:HMM:NF013538.4"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
     gene            complement(528..1808)
                     /gene="hemL"
                     /locus_tag="VE223_01415"
     CDS             complement(528..1808)
                     /gene="hemL"
                     /locus_tag="VE223_01415"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HZC20281.1"
                     /translation="MSNRSESLFERAKAVIPSGVNSPVRFYEPYPFFVASGKGSKIVT
                     VDHITCIDYCMGYGSLLLGHSHAHVMEAIRSQLEYGTLFCIPTEKEVQLAELISKVIP
                     CAEMTRLVNTGSEATMSAIRLARAFTKKRKVIKFEGCYHGAHDYVLVSAGSNWIGVPT
                     SEGIIKEVSSQTMVIPYNDPSELEQIIKREDDIACVIIEPIPANMGVIIPDKQYLNEI
                     RKITRQMDIVLIFDEVITGFRLSLGGASEFFGIKPDLATFAKAMGNGFPIAAITGKKE
                     IMQQLAPGGKVYQASTYAGNPISVSASIATIEKLIKEKNEIYPRIAKTCDRIVGGIKD
                     ELEHLKLSFTTNAIGSMYQLFFTPEKVDDAKSAKKASTIMFKRFYNELLQNGIFIPPS
                     QFETCFVSNAHTEDDVDKTVESYTDALHKVKEVL"
     gene            complement(2020..3033)
                     /gene="hemB"
                     /locus_tag="VE223_01420"
     CDS             complement(2020..3033)
                     /gene="hemB"
                     /locus_tag="VE223_01420"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HZC20282.1"
                     /translation="MKINISNKDDSTAFPTVRLRRLRRSAAVRDLLQEIHVSVKDLIC
                     PLFVQEGSKKPQLIESMPEIQRIPLSKIIDEVQAISDLGIRAIILFGIPSNKDNIGTS
                     AFNDNGIVQQSIELIRKHFGDTIAIISDVCLCQYTAHGHCGIVIDKKVDNDSTIDTLA
                     KVAVSHARAGVDIVAPSAMMDGQVTTIREGLDEDGFTDIAIMGYSAKHASSLYAPFRD
                     IAHCAPEFGDRLTYQMPFSNVREAIHEIDMDINEGIDILMVKPAIPYLDIIYQAKNNT
                     TLPVAAYSVSGEYALIKAAASEGWVDENAVMKEFLTSIKRAGADMIITYHAKKMADLL
                     LNE"
     gene            complement(3014..4315)
                     /gene="hemA"
                     /locus_tag="VE223_01425"
     CDS             complement(3014..4315)
                     /gene="hemA"
                     /locus_tag="VE223_01425"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HZC20283.1"
                     /translation="MTSSSVYTTAQSLHIINARVTYRNMPIHLLEKFTFKDLYSAHKM
                     LIEKAGLNECVIIQTCNRVEIFAVTKNTDEQKMLEEWAFEVGFSNKEFANIVEISKDK
                     DVVYHLLRLASGVDSLVIGEDQVLGQIKRAFEFSHKNGFAGSNLSIIFHRALKLGSKI
                     RASTGLNKGSISVGSLAVSLAGEYFDNLKNKHIMLIGSGEGASLVAKSLKQRQINFMI
                     TSRTFERAKAFADTVAGSPVHFEKALEMFHNIDLIFVCTTAPYHLITYDRIEKARRAT
                     EEGMMIFDLSNPRTVEEKVATIKKVKLINIDQISELVEKNIRARKNEIQTAEKLINDE
                     MKFVDSAVKRKKAEPMIVSVFKSVDVIREHELNKAFSILGKTIGSKESKTIEQLSYAI
                     VEAILSVPMNNLRKEIELCDENEEELMNLVAKLFKYEDKYQ"
     gene            complement(4312..4989)
                     /locus_tag="VE223_01430"
     CDS             complement(4312..4989)
                     /locus_tag="VE223_01430"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HZC20284.1"
                     /translation="MSRLIVDLNLAGKNVMVVGGGTEGIRKIRGLLGQNCKITVISNR
                     LNRYLSTLEKQGQIQIIKTKLKDASILDNYKNPFLVLAATDDKMLNRKIIEKGRSMGS
                     FVYAADDPEFSDFSYASVINVEGMMQVAISTYGRSPIMARKVRIKLERMLHRIIKKSD
                     IENTKLQEFARLAAKPKLKTVQERKQFLYSLIHNKDIQSLITQNRVEEAKTATLELLY
                     KWEKGNK"
     gene            5234..5410
                     /locus_tag="VE223_01435"
     CDS             5234..5410
                     /locus_tag="VE223_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20285.1"
                     /translation="MEEDNGFAGDLALDVIEEIGPATKGRLEEAGFKSIKDLVVRGPV
                     DIAETTGIEMDKSV"
BASE COUNT         1632 a         1128 c         1018 g         1901 t
ORIGIN      
        1 cccgcatatt gagtctggtt aggccagctt cagcaaggat caaagagtca tattctcctt
       61 tcattgattt ttttactctt gtttccacat ttcctcgaat aggtttaata cataggtcag
      121 gacgtttgcg cattacttga atagcgcgtc ttaagctgca agttcctatt acagaagaag
      181 aagggaggtc tacgaattta attttcttct catttactag cacatcattt ggtgtagccc
      241 tttttggaat agatgcaata gttagcttat cggaaagttc cgagggaata tccttcaaac
      301 tatgaacagc aaaatcacct cccgtgaaat aacagcttca tttacatctt tttcaaaaat
      361 tcctttttca tctattgtga atagcggtct tctgtcaaca tcccctctgg tcctaatcgt
      421 aaaagcttca aaatcaatag aaggatttct ttttcttaat ttatctaaga caatttgtgt
      481 ctgagctacg gctagtctac tacctctagt cccgaccttc aacttgatca taacacttct
      541 ttcaccttgt gtagtgcatc ggtataggat tcgacagttt tgtcaacatc gtcctcagta
      601 tgagcattag aaacgaagca agtttcaaac tgtgatggag gtataaagat tccattttgt
      661 aacaattcat tataaaatct tttgaacatg atagtgctag ctttcttcgc acttttggca
      721 tcatctactt tttcaggagt aaaaaacaat tggtacatcg agccgatagc attggttgta
      781 aaggatagct ttaaatgttc tagttcatcc tttattccac cgactattcg atcgcatgtc
      841 ttagcaattc gtggatagat ttcattcttt tcttttatca gcttttcgat tgtcgcgata
      901 cttgctgaaa cggaaatcgg attgccagca taagtactcg cttgataaac ctttcctcct
      961 ggtgctaatt gctgcatgat ctctttcttt ccagtaattg ctgctatagg aaatccattt
     1021 cccatggctt tggcaaatgt tgccaaatcg ggtttaattc caaagaattc gcttgcacca
     1081 cctagagaga gtctaaagcc cgtaatgacc tcatcaaata tcaatacaat atccatctgt
     1141 cgagttattt ttcttatttc gttgagatat tgtttgtcag gtataatgac acccatgttt
     1201 gctggtattg gttcaataat gacacaagca atatcgtctt cccttttaat gatttgctcc
     1261 aattcagaag gatcattata agggattacc attgtttgcg atgagacttc tttaatgatg
     1321 ccttctgagg ttggaacccc tatccaatta gaaccagcgc taacaagaac atagtcgtgg
     1381 gccccatgat agcacccttc gaattttata actttcctct tctttgtaaa cgcacgcgct
     1441 aatctgatgg cactcattgt ggcctctgac ccggtgttta ctaatcttgt catttctgca
     1501 catggaatta ctttcgaaat caattctgcc aattgcactt ccttttcggt tggaatacaa
     1561 aacagagtcc catactctag ttgcgatctt atggcctcca ttacatgtgc atgagagtga
     1621 ccaagtaaga gagatccgta tcccatacaa taatcgatac aagttatgtg gtcaacagta
     1681 acaattttgc tgcctttgcc tgaagctaca aaaaatggat atggttcgta aaaacggact
     1741 ggactgttaa cccctgaagg aattactgcc tttgcccttt caaagagaga ttccgatctg
     1801 ttagacatcg ataggttttg tgcgtgggaa atatatctat gtttatagat ttcaaattct
     1861 tcagtattac acacgttaca atatttgtta acatcgtaag attaactatt attataaaag
     1921 tcttatacta acataagtag acatatttgc tggcaatatg ggagataaca aattagaatt
     1981 ttatatcgga tgtaaacaga agggataata aattggcaac tattcattca atagtagatc
     2041 agccattttt ttagcatgat aggtgattat catatctgcg cctgctcttt tgattgatgt
     2101 aagaaactct ttcattacag cgttttcgtc aacccaaccc tctgaagctg ccgcctttat
     2161 cagtgcatat tctccagata cgctatatgc ggcaactggt aaagtagtat tgttttttgc
     2221 ttggtaaatt atatctagat atggaatcgc aggcttaacc atgagaatgt ctataccttc
     2281 gttgatatcc atgtctattt catggattgc ctctcttaca ttggaaaatg gcatttgata
     2341 ggttagcctg tctccgaatt caggagcaca atgagctata tctctaaatg gtgcatacaa
     2401 tgaggaggca tgctttgcgg agtaccccat tattgcaata tcagtaaatc cgtcttcatc
     2461 caatccttca cgaatagttg tcacttgacc gtccatcatt gctgatggcg cgactatgtc
     2521 tacaccagcc cttgcatgac taacagcaac ttttgccaag gtatctatag tgctatcatt
     2581 atccactttt ttatctatta caattccaca gtggccgtgt gcagtatact gacataaaca
     2641 gacgtcgctt atgatcgcaa ttgtatctcc aaaatgtttg cgtatcaatt caattgactg
     2701 ttgtacgatt ccgttatcgt taaacgcgga agttcctatg ttatctttat tagatgggat
     2761 accaaacaga ataatcgccc taataccaag gtcagaaata gcctgtacct catcaataat
     2821 tttcgaaaga ggtattcgtt gaatttcggg catcgactca attagctgag gttttttaga
     2881 tccttcttga acaaataatg gacaaattaa atctttgact gaaacatgaa tttcctgcaa
     2941 caaatcgcgt actgcagcac ttcttcttaa acgtcttaat cttacagtgg gaaaagcggt
     3001 agagtcgtcc ttgttactga tatttatctt catatttgaa cagtttggca acaagattca
     3061 ttagctcttc ctcgttttca tcacataatt ctatttcttt tctgagatta ttcattggaa
     3121 cagaaagaat cgcttcgaca atagcatatg aaagttgttc gattgttttg gattctttgg
     3181 atcctatggt ctttcccaga attgaaaatg ctttgttcaa ttcatgctct cgaataacat
     3241 ctacactttt aaaaacagag actatcatgg gctcagcctt ctttctttta actgcactat
     3301 cgacgaattt catttcatca ttaattagtt tctctgctgt ttggatttca tttttgcgag
     3361 ctcgtatgtt cttttctaca agctcggata tctgatctat gtttatcaat ttgactttct
     3421 ttattgttgc aaccttttct tccacagttc tagggtttga gaggtcaaaa atcatcattc
     3481 cttcttctgt ggctctccta gccttctcaa tcctatcgta tgtaattaga tgatatgggg
     3541 cagtagtaca gacaaaaatc aaatcaatat tatgaaacat ttctagtgcc ttttcaaagt
     3601 gaactggact acctgccacg gtatcagcaa aggccttggc tctttcaaac gtcctgcttg
     3661 taatcataaa attgatctgt cgctgtttca atgatttcgc aaccagacta gctccttccc
     3721 cggaaccaat gagcatgata tgtttatttt tcaaattgtc gaaatattct ccagctaaac
     3781 ttactgcaag tgatccaaca gatatgctgc ccttgtttag acccgtgctt gcccgaattt
     3841 tgcttccgag tttaagtgcc ctatggaata taattgaaag attagagcct gcaaacccat
     3901 ttttgtggga gaattcaaaa gctcgtttta tttgcccaag tacctgatct tcaccaataa
     3961 ctaaagagtc tactcctgac gctagtctta acaggtgata tacaacgtct ttatctttac
     4021 taatttcgac tatatttgca aattctttat tcgagaaacc aacttcaaaa gcccattctt
     4081 ctagcatttt ctgttcatca gtattcttgg tgacagcgaa aatttcgact ctgttgcagg
     4141 tctgtataat tacacattcg ttcaatccgg ccttttctat cagcattttg tgtgcactgt
     4201 agagatcttt gaaggtaaat ttttcaagaa gatgaatggg catattccga taagtgactc
     4261 tggcattaat tatgtgtaga gattgtgcag tggtatatac ggatgatgag gtcatttatt
     4321 acctttctcc catttatata aaagttcaag agtagctgtt ttggcttcct ccactctatt
     4381 ctgcgtaata agactctgaa tatctttatt gtggatcaaa gaatatagaa attgttttct
     4441 ttcttggact gtttttagct ttggctttgc agcgaggcga gcgaattcct gcaactttgt
     4501 attttctata tccgattttt tgataatcct atgtagcatc cgctctaatt taatcctgac
     4561 tttacgagcc ataataggac tcctgccata ggtagagatt gcgacctgca tcatcccctc
     4621 aacgttaata actgaagcat aagagaagtc gctgaattcg ggatcatctg cagcatatac
     4681 aaatgaaccc atagaacgac ctttttctat aatcttacga tttagcattt tatcatcagt
     4741 ggcagctaaa actaaaaacg gatttttata attatcaagt atacttgcat cctttagctt
     4801 tgtctttatt atttgtattt gaccttgttt ctctagggta ctaagatacc gatttaaacg
     4861 gttacttata acagtgattt tacaattttg acctaagagt ccacggattt ttctgatacc
     4921 ctctgttcca ccaccaacaa ccattacatt tttacccgca agatttaggt cgactatcaa
     4981 acgcgacacc agagatttaa caagggactc tggatcattt ctttatttaa ttgttgcatc
     5041 acgaacttca acatgctaca atattattaa gatataacaa tgcagtgcaa atattgagta
     5101 atcgaagctt atctgaatgg atgtaattta caacgtcatg aatacatctt gaaaagacct
     5161 gataacgatc tttacagtga tgatttatat actcaagact aattaggagc tgctccagct
     5221 tgattactgc actttggaag aagataatgg ttttgcaggg gatttggctc tggatgttat
     5281 tgaggagata ggcccagcca ccaaaggccg tctggaagaa gctggattca aatcaattaa
     5341 ggacttagtg gtaagaggac cagtggatat tgctgaaact accggtatag aaatggataa
     5401 atcagtataa ctttgcaaca aggcaagagt cagacttgaa gagttaggaa ttattgataa
     5461 aacctttatt acagctacaa aactttatga taagagaaag aaagaggaac ggatttctac
     5521 tggctcaaaa aatctcgatg atctttttga aggagggata gagacgaggg cagtcacaga
     5581 agtctatggt gagtatggaa caggcaaaac tcagatctgt catactttat ccctactggt
     5641 acagcaaaga aaatcgaaag atggccaagt ttgtaaggc
//
LOCUS       DASQSJ010000069         3612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_167306, whole genome shotgun sequence.
ACCESSION   DASQSJ010000069 DASQSJ010000000
VERSION     DASQSJ010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167306"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VE223_01440"
     CDS             <1..397
                     /locus_tag="VE223_01440"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HZC20286.1"
                     /translation="HYPIFAVCNPSGKNPGNVWEISTKAHYGNEHFAIFPEDLIARIV
                     NFATKKGDWVLDPFAGRGTTGIVSALLGRNFTGIELYPENVIKAEENISDATKGKFTA
                     KFENQIEDVPRKNPFLRSISVLKLMTIIP"
     gene            1103..1504
                     /locus_tag="VE223_01445"
     CDS             1103..1504
                     /locus_tag="VE223_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZC20287.1"
                     /translation="MFNRIGGVILLVSDLKKSIKFYNKVLGMELKQQSKDWVEFSRQG
                     TVLALHPLKKKKKLTKNNSMLVGFNVSELETVCSDLKKKKVKFHKKLTNEPFGKHAII
                     EDPDGHLISLAEMITKEELMQIPYYHGFAPE"
     gene            complement(1725..2246)
                     /locus_tag="VE223_01450"
     CDS             complement(1725..2246)
                     /locus_tag="VE223_01450"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HZC20288.1"
                     /translation="MIIFVSAAALLLLTVILLKIINNGTNAFVPGINTLDQYSNNSSL
                     RPSSYLKANITINGFSLSADVPTTDDQFQKGLDIKDRIDDSHGMLFIFKEPAKVPFWM
                     HGMKFPIDIIWFDNNSSVVHIEHNLQPCITDLVCPSYSPEKDALYVLETAAGFSERHN
                     VKVGTQMSFRLIK"
     gene            2634..>3612
                     /locus_tag="VE223_01455"
     CDS             2634..>3612
                     /locus_tag="VE223_01455"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20289.1"
                     /translation="MVDLSREEEEIYFSSKTRSCCVCFVSMVDSVGFTFQIKDAEKIR
                     KYYSIFINTMAAIARSFGASIIKNTGTSLVYFFPKTGNEYNGYAFRDTIECGITMTAA
                     HYIINEKLREEGALPPLHYRISADYGKVEVARSISSPDTEDLFGSTMNICAKINSMAP
                     PNGMVIGSELYNYCSAGTCFSSALFEDYYFRKIGEYSIAGSSNPYSVYSVSVSKSRLD
                     TIITPRHNNDLKLYSSRQQRQQQENTHNILLVDDEPDTLFTYKTFLLAIEGYKVDAFT
                     DSQKALQSLAKVNPSYYDLVVMDIRMPGLNGLQLYYKIKAMNPDIKVLFV"
BASE COUNT         1180 a          652 c          705 g         1075 t
ORIGIN      
        1 gcactatcca atatttgcag tatgtaatcc gtccggtaaa aacccgggga atgtttggga
       61 gatttctact aaggcacatt atggaaatga acatttcgca atatttccgg aggatctaat
      121 tgccagaatt gttaattttg caacaaaaaa aggagactgg gttcttgatc cctttgctgg
      181 aagagggaca accggaattg tttcggcgct ccttggaagg aactttacgg ggatagaact
      241 ctatccagag aatgttatta aagcagaaga gaatatttca gatgccacca agggcaaatt
      301 tactgcaaaa tttgagaatc agatagaaga cgttccaaga aagaatccct ttctgagaag
      361 catatctgta ctcaaattaa tgactattat tccatgacga caagttaacc cacttttctt
      421 ttcaacaaca cagtagaaga aatttcttct gtacgccgtc gtatgtaaat catcggtcga
      481 attttaacac gcatagatgt ctgcaggcag cgttcttcaa caaaaattgg gtataaacaa
      541 acctaagaaa agcacctatc tgtccaaaga tggcatgctt agtgatatgc tccatgattg
      601 attcagtagt gactggtttt tggagtatat cgacagcaca ggttgccgcg cgcccataat
      661 ctaaacaaca ttcgaaagtc atgtaacggg aatgtctgct gacgtagttg actatgaaac
      721 tgcttaaatg agtcatccgc agaattctgt cattttgaat ctactgcact aatatgccgt
      781 acgacactca tctagcattt tggtaataga catctgtttt attctctctt ggaatgggct
      841 taaaaaccca gtgggcttcc atttccttgc tatgaagagt tcgggcaagg agtcgcggtt
      901 tgcttccagt gtctgcagac tgaagattta tgtatgaacg ttgtatgcat atgcgtttta
      961 ctttgatgta tgtacatact gccctagcga ttctgttttg tcttatgttt attcgagtag
     1021 aattttcgcc tcatcagttc ttgtaatcta ttatgattat ctaccatttt atatattggg
     1081 acgtctgata taaatgcaat aaatgtttaa cagaataggc ggagttatcc tccttgtttc
     1141 cgatctgaaa aaatcaataa aattttataa taaggtgttg ggaatggaat taaagcagca
     1201 gagtaaggat tgggttgaat tttcaagaca gggaacagta cttgccctgc atccactcaa
     1261 gaagaaaaag aaactgacaa aaaacaatag catgctagta ggattcaatg ttagtgaatt
     1321 agagactgtt tgtagtgatc tcaaaaagaa aaaagtaaaa ttccacaaga aactaaccaa
     1381 cgaaccgttt ggaaaacacg ctatcataga agatccagat ggacacttaa tttcgttagc
     1441 agaaatgatt acaaaagagg agcttatgca aatcccttac tatcacggat tcgcaccgga
     1501 gtagtagtca gttgcagatg ctgttgtaca gcaccgacct tgccaatgca tctactaacc
     1561 atcctaggat ggatgagtag acacgatata tctgcctaac ttctacgcca caactataat
     1621 ttggaaaaaa gatttttatg gaatatcaaa agcagaattt agtaagggat ttgcatcatc
     1681 taaaagaccg attaaaacta agatggtatt cgcaccaaac catcctactt gatcagcctg
     1741 aagctcatct gtgtacctac ctttacgtta tgtctttcag aaaaacctgc tgccgtctct
     1801 aatacataca acgcatcctt ctctggagag tatgagggac aaacaagatc tgtgatacat
     1861 ggttgcagat tatgttctat atgtactaca ctactattat tgtcaaacca aattatatct
     1921 ataggaaatt tcataccgtg catccagaat ggaacttttg ctggttcctt gaatataaac
     1981 aacattccat gactgtcgtc tatacgatct ttgatatcca atcctttttg gaattgatca
     2041 tcggtagtcg gaacatctgc agacaaacta aagccgttaa ttgtaatatt tgccttcaaa
     2101 tagctagaag gccgtaagct actgttattg ctgtattggt ctaatgtatt tatcccggga
     2161 acgaaggcat ttgtgccgtt attgataatt tttaaaagaa ttactgttaa taacaataat
     2221 gctgctgcag aaacaaatat tatcatggat ctgctggaaa ggtgatgcga aatacggctg
     2281 ttcatatagt ttattacaat agtggatgta tatgcattac ttttcaagat caggactgga
     2341 agttatagac acagaaccta aatcaaataa atgagttcag aagttctaaa atcagatcag
     2401 ccgaagatat cgccacagga ccattctggt gatatggcat tacgcctcag acacatattt
     2461 attctgctga tatgtgcaag gagaataact ataggatcct tggataaatg atttaaggct
     2521 caacgatgat gtatatatat aatcatcagc tttaacaaat cataactatc tataagaagc
     2581 aaaaatttgt tatactaaac taataagagc aactgtatag atacttcctt atcttggtag
     2641 atctatcaag ggaagaggag gaaatatact tttccagtaa aacgagaagc tgttgtgtat
     2701 gttttgttag tatggtggat tctgtcggtt tcacatttca aattaaggat gcggaaaaga
     2761 tcagaaaata ttactcaatt tttattaaca caatggccgc aatagccaga agctttggcg
     2821 caagcataat taagaataca ggtactagtt tagtatactt ctttccaaaa acaggcaacg
     2881 aatacaacgg ttatgctttc agggatacta tagagtgcgg tattacaatg acagcagcgc
     2941 actacattat aaatgaaaag ttaagggaag aaggagcgtt gcctcccctt cactacagga
     3001 tcagtgctga ctatggtaaa gttgaggtgg ctagatcaat atcctcccct gataccgagg
     3061 atttatttgg ttctactatg aatatttgtg caaagataaa ctctatggct cctccaaatg
     3121 ggatggtaat aggcagtgag ctatataatt attgtagtgc aggaacatgc ttctcttccg
     3181 ccctttttga agactattat ttcagaaaaa taggagaata ctcaattgct ggatccagca
     3241 atccatattc agtatattca gtatcagtaa gtaagagcag actagatacc ataattaccc
     3301 caaggcataa taatgatttg aaattatata gtagccgtca acaacggcaa cagcaagaga
     3361 atactcataa tattttgctg gtagacgacg aaccggacac gctctttact tacaaaacat
     3421 tcttgttggc tattgaaggt tataaggtag atgcatttac cgattcgcaa aaagcattac
     3481 agagccttgc aaaggtaaat ccttcttact atgatcttgt agttatggac atacgaatgc
     3541 ctggccttaa tgggcttcag ctttattata agatcaaggc aatgaatcct gacatcaaag
     3601 ttctatttgt gt
//
LOCUS       DASQSJ010000070         2119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_521513, whole genome shotgun sequence.
ACCESSION   DASQSJ010000070 DASQSJ010000000
VERSION     DASQSJ010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_521513"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..460
                     /locus_tag="VE223_01460"
     CDS             <1..460
                     /locus_tag="VE223_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20290.1"
                     /translation="IYIIFIALLVFQVYLNIMAYYAVVNGMKNFSLFIVGIIMIVFAG
                     MFHIYRHGRTMSKAPPPPPPVRPPTTAKPSPLPSKEGAPSTPATVERPLAPPPVQKAT
                     ANQPSSSQAPASGSKAQAGKSSETRATPDTSSTTTSDTTQRTEMPEKNNY"
     gene            548..1009
                     /locus_tag="VE223_01465"
     CDS             548..1009
                     /locus_tag="VE223_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HZC20291.1"
                     /translation="MENHAAGISILAFIVAVSVSIGYYQFVYIREANAKPQLPAEVLN
                     PPQTTNVVIVPGSSNPGQTKNFTPKEADGSLGLSNKVVWKNTDAVAHSVTSDTDYKDQ
                     INGSFNSIAKIGLVPPGRTFEFTFTTDGEYHYHCEPHPWMQALVKIAPSKF"
     gene            complement(1080..1457)
                     /locus_tag="VE223_01470"
     CDS             complement(1080..1457)
                     /locus_tag="VE223_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20292.1"
                     /translation="MSEIKGISIAISQMEISSSQDVHGKINIYYPGRFDSIVINSQIE
                     NSSDIFHFTHLNGKRIGNPYARLSILKDDIGNRKTLEFIAKTNHIPLGRYSNVKFRAT
                     IIQEHKEVASDVVYIKILNFPIS"
     gene            1657..1797
                     /locus_tag="VE223_01475"
     CDS             1657..1797
                     /locus_tag="VE223_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20293.1"
                     /translation="MNKKGKEQFIVLERVAIRRHSLSDQHISPEPYKKDKSCKIKWYQ
                     LK"
     gene            1850..>2119
                     /locus_tag="VE223_01480"
     CDS             1850..>2119
                     /locus_tag="VE223_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZC20294.1"
                     /translation="MLSEQAIPQRITYVNGYGVRYLDFDNIPRKSDDNNPLILLHGIG
                     ASAERWLPVAPTLSKYFRVLVPDIVGFGYSDKPTVEYTIGFFMDFL"
BASE COUNT          678 a          421 c          388 g          632 t
ORIGIN      
        1 gatttacata atttttatag ctttgttggt ctttcaagtt tacttaaata ttatggctta
       61 ttatgcagtc gtgaatggaa tgaagaactt ttctctgttt atagttggta tcataatgat
      121 agtgtttgca ggtatgtttc atatttacag gcatggaaga accatgtcaa aggcacctcc
      181 tccaccaccg cctgtaaggc ctccgactac tgcaaaacct tcgccccttc cttcgaaaga
      241 aggcgctcca tccacacctg ccaccgtaga aaggccacta gctcctcccc cagtacaaaa
      301 ggctactgcg aatcaacctt cgagttctca agcaccagcg tccggcagca aagctcaagc
      361 cggaaaatca agcgaaacaa gagctacccc tgatacctcc agtaccacca catcagacac
      421 aacacaaagg actgaaatgc ctgagaaaaa taattactaa tgacaaatat gatatgacaa
      481 cagctcacga tggacgaata actttatatg taaacattaa atcaagaata ataggaagga
      541 cgtttgcttg gaaaatcatg ctgctggcat aagtattcta gcatttatag ttgcggtatc
      601 cgtaagtatt ggctactatc aatttgtata tattcgtgaa gctaatgcca agcctcaact
      661 tcccgcagaa gtattaaatc cacctcagac tactaacgtt gtaatcgtac caggttcgtc
      721 aaatccaggt cagacgaaaa acttcacccc aaaagaagct gatggctcat tggggttatc
      781 caacaaagtt gtatggaaga atactgatgc agttgctcat tctgtcacat cggatacaga
      841 ttataaggat caaatcaatg gttcattcaa ctcgattgct aaaataggtt tggttccacc
      901 aggacgtaca tttgagttta cgtttacgac tgatggcgaa tatcattacc attgtgaacc
      961 acatccttgg atgcaagcac ttgttaaaat tgccccatca aagttctgac tttatttgat
     1021 gtggaacagc tttggagttt tctaccctgt tcgggatgac aagtgctaaa tgaacaagat
     1081 caggaaatag ggaaatttaa tatttttata taaactacat cacttgctac ctctttatgt
     1141 tcctggataa ttgttgcacg aaattttaca ttagagtacc tacctaatgg aatatggttg
     1201 gtctttgcaa taaattccaa agtttttcga tttccaatat catccttcaa tatcgagagc
     1261 cttgcataag gattgccaat cctttttcca tttagatgag taaaatggaa aatatcactc
     1321 gaattttcta tctgtgagtt aattactata ctgtcaaaac gccccgggta gtaaatattt
     1381 attttgccat gaacatcttg actggaagaa atttccattt gtgaaatagc tatcgagatg
     1441 ccctttattt cgctcattct ttcaactcat agatatgaag atataagcta tgccttgaat
     1501 tggaatagcg aataaaatta ttggaagatt gttaaatcta ttccgtccaa taaggaccta
     1561 tgggaaaaag cttgacacca atgcggtttg catatgtcat atgatgctcg acgatttaga
     1621 aagaactaga agtatcgccc gtttcctact tgagcaatga ataagaaagg aaaagaacag
     1681 ttcatcgtac ttgaacgtgt ggctatacga aggcattcac tttcggatca acatatctct
     1741 cccgaacctt ataaaaagga caaatcatgt aaaattaaat ggtaccaatt aaaataatac
     1801 aagatactat aaattaaaat aatataacgt actatatagc ctagccggtt tgttgtctga
     1861 gcaagcaatt ccacagagaa ttacatatgt gaatggttat ggtgtaagat accttgattt
     1921 tgacaacatt ccccgtaaat ctgacgacaa caatcctcta attcttttac atgggattgg
     1981 agcctctgcc gaacggtggt tgcctgtagc accgacgcta tcgaaatatt ttagagtact
     2041 agtacctgac attgttggtt ttggatatag tgataagccc acagtagaat atacaatagg
     2101 tttttttatg gactttttg
//
LOCUS       DASQSJ010000071         4885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_8744, whole genome shotgun sequence.
ACCESSION   DASQSJ010000071 DASQSJ010000000
VERSION     DASQSJ010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4885
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8744"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..507
                     /locus_tag="VE223_01485"
     CDS             <1..507
                     /locus_tag="VE223_01485"
                     /inference="COORDINATES: protein motif:HMM:NF033823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaemetzincin family Zn-dependent
                     metalloprotease"
                     /protein_id="HZC20295.1"
                     /translation="STLVKVLSKEFNSDVSTALLITEIPVQLFDKKRNQWKSNEILQW
                     ILDKHRPNKPTTRTRTKILAICDFDAYSDGLNFVFGEAYLNGNISAIYLPRLRQQFYG
                     LKADGCLFYQRIVKEAVHELGHAFGMTHCGNTRCVMHFSNSLSETDTKESHFCNVCKH
                     IIGNYTSV"
     gene            complement(820..1815)
                     /locus_tag="VE223_01490"
     CDS             complement(820..1815)
                     /locus_tag="VE223_01490"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZC20296.1"
                     /translation="MNNNKIIIIILVTAVIATSIIFASSISSSTGDISSTGHSSSSTG
                     HSSSSTGHSSSNKVVILTFSGSSKSQYVNARPILNEYGFKGSFFITCNWVGSTSSKSP
                     YMTWQNIATLQKEGHDIESEAMTHKALTKLSATALDYEARQSKRCLSNHGINATVFAT
                     PYGKGGNNATVINTIAKYYNFSVSGFSNLMYLHCNGWKQRSGQQQSDCSTYLHDGSLT
                     YANRYSIKEWGHNTFDIKYSHNDTQIFKVFVDEVNSQAQHNSNGVILTIPIIAYHKID
                     NSKGRESTNVNLFANEMKYLHDNKFKIITMADLVYDKNNKYIRVRDIPGVTTGSR"
     gene            complement(1866..2447)
                     /gene="cysC"
                     /locus_tag="VE223_01495"
     CDS             complement(1866..2447)
                     /gene="cysC"
                     /locus_tag="VE223_01495"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: protein motif:HMM:TIGR00455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004020 - adenylylsulfate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HZC20297.1"
                     /translation="MSKEAVLSTSSSSSSSSPSFVIWLTGLPSSGKTTIASTLKPKLK
                     QLGYNAEILDGDTLRNELSPDLGFTKQDIYTHARKVIFLCKILYRNRIVSIVSAVSPH
                     KEVRDFIRKEIGNFVEVYVSCSLDTCIKRDCKGLYKKALDGKMHNLIGLQIPYEEPVN
                     PEVTVNTEHDSLDNIVNKIISKLKDLGYMSDAN"
     gene            complement(2477..3892)
                     /locus_tag="VE223_01500"
     CDS             complement(2477..3892)
                     /locus_tag="VE223_01500"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HZC20298.1"
                     /translation="MASVKPKVLVIGLDGTPANLLFNDLIEYLPNIKAMMDKGLFATL
                     ESCHPPITIPAWMVMMTSRSPGELGIYGWRQRKGFSYTEAWIANSLSIREPRLWDLLA
                     RDGKKVCLIGIPPSYPPPKVNGSLISCSLTPKGSKNFTYPPQLASEIENLLGGNYVFD
                     ISFRIEDRDEALNKLYEMTEKRFKVIKHLIKKEIWDYFMFVEIGFDRLHHMFWKYYDN
                     THPKYEPNNRYRKVIPEYYKYVDERIGEILSTIDDDTYVILVSDHGTASMKGAFCINE
                     WLINKGYLVLKKYPNSVTDLDNCEVDWEKTTAWGWGGYYARIFFNVKGRESNGKIPMD
                     KFNIVREELKAELLTIAGPEGEVFDNKVFRPEDLYKESNGSKPDLIVYFDNLFWRSAG
                     TIGHNALYLSENDAGPDDSVHWMDGVFILYKKHKFNHGSKLNKMSIYDIAPTILDIMN
                     TTIPGNMQGKVIEEVSRRVHN"
     gene            4020..>4885
                     /locus_tag="VE223_01505"
     CDS             4020..>4885
                     /locus_tag="VE223_01505"
                     /inference="COORDINATES: protein motif:HMM:NF021601.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZC20299.1"
                     /translation="MKILSRNKVSLPLFISVVVVILSTILHSTFYANTATAAAAAVNS
                     TTTNTAGSSSSHKSSGCNCVAFRIDDVSDNNRVGNLAVLNLFLSENEPLTLGIVMNHI
                     GRSPVLMDKIMEGANKGLFELALHGYDHLNYVKLAPQEQMDQLSKANERMNDLFGKPS
                     KIFVPPYDTFNNYTVNALSRLGIPIISAGDFEYNGTQSQYHIFSTINPVAHDPKSNQV
                     YHLARSTGIEDFGDNNLPIKLPLQTTLNRAYAAISKYGYAIIVMHPTSFLTMKNGKYT
                     NMVDQNEINNVK"
BASE COUNT         1496 a          942 c          788 g         1659 t
ORIGIN      
        1 tctactttag taaaggttct atcaaaagag tttaattctg atgttagtac tgcgttacta
       61 attacagaaa taccagttca attatttgat aaaaagagaa atcaatggaa atcaaatgaa
      121 atattacaat ggattttgga taaacataga ccaaacaaac caacaacaag aacaagaaca
      181 aaaatactgg ctatatgtga ttttgatgca tattctgatg gattgaattt tgtctttgga
      241 gaagcatatc tcaacggtaa tatatcggca atttatcttc caaggttaag acaacagttc
      301 tatgggttaa aggcggatgg ctgcctattt tatcaaagaa tagtcaagga agcagtacat
      361 gagcttgggc atgcttttgg aatgactcat tgcggaaata caaggtgtgt gatgcacttt
      421 agcaattcat tgtctgagac agataccaaa gaaagtcact tttgtaatgt ttgcaaacat
      481 attattggaa actatacatc cgtttaaatc aaaaatgttc attttggact caaattcatt
      541 attacatatg tgctaattat ttttattcta ctatctttag aatgttatta atatcatctt
      601 ttgacttgtc tttaattttt agattggcaa gtatcatgta tgttttcttc ttgatttgga
      661 tatccaaact tcgagaaata catatacata tcatgctagt gaaaacatat acactttgat
      721 atgtgaaaag aatcatttac caggaataac ataacaaacg ttcctaaatg ttttttaggc
      781 tttttcatca atatgtgaca acaacaagga aactaataat catcgacttc cagtagtaac
      841 tcctggaata tctcttacac gtatgtattt attattttta tcatatacaa gatcagccat
      901 agttataatc ttaaatttat tgtcgtgcaa atatttcatt tcgtttgcaa acaaatttac
      961 attagtactt tcccgccctt tgctgttatc tatcttgtga tatgctatta taggaatagt
     1021 taaaattact ccattgctgt tatgctgagc ctgactgttc acctcatcaa caaatacctt
     1081 gaatatttgt gtatcattat gtgaatattt tatatcaaaa gtattatgac cccattcttt
     1141 aatagagtat ctatttgcat aagtcaagct accatcatga aggtatgtac tacaatcaga
     1201 ctgctgctga cctgaacgct gcttccaccc attacaatgc aaatacatca gattagaaaa
     1261 accgctgaca gaaaaattgt aatacttggc gatggtattg attacagttg cgttatttcc
     1321 tcctttgcca tatggagtag cgaaaactgt tgcgttaata ccatgatttg aaagacatcg
     1381 ctttgattgt cttgcttcat aatctaaggc agtggctgat aattttgtaa gagccttgtg
     1441 cgtcattgcc tcagattcta tatcgtgacc ttccttttgc agtgtagcta tgttttgcca
     1501 tgtcatatat ggggacttgc tagaagttga tcctacccag ttacaagtaa tgaagaaact
     1561 acccttaaat ccatattcat ttagaattgg tctggcattt acatactggc tttttgaact
     1621 accactgaat gttaaaatca ccactttgtt actactacta tggccagtac tgctactact
     1681 atgtccagta ctgctactac tatgtccagt actgctgata tcgccagtac tgctgctaat
     1741 actgcttgca aagattatag atgtcgctat tacggctgtt actaaaatta taatgattat
     1801 tttattatta ttcacgattg tcacaatcga atctaaatca aaataatttt aaatattgca
     1861 ttgttctaat ttgcatctga catataacca agatctttta gctttgaaat tatcttattc
     1921 actatattgt caaggctatc gtgttcagtg tttactgtga cctcgggatt aacaggttcc
     1981 tcgtaaggaa tctgtaagcc aattagatta tgcatcttgc catccagagc ttttttatag
     2041 agacctttgc aatctctttt aatacatgta tcaagtgaac agctcacata aacttcaacg
     2101 aaattgccta tctcttttct tataaaatcc cttacttctt tatgaggaga cactgcagaa
     2161 acaatactca ctattctatt ccgatagagt atcttgcaga ggaaaatcac cttccttgca
     2221 tgtgtatata tgtcctgttt agtaaatcct agatccggac tgagttcatt tctcagtgta
     2281 tctccatcta aaatctcagc attataacca agttgtttta gtttaggttt tagtgtgctg
     2341 gctattgttg tctttcctga acttggtaag ccagtaagcc atattacaaa cgatggcgat
     2401 gatgatgatg atgatgatga tgtcgaaaga actgcctctt tactcacttc ttcgatcact
     2461 tttccttgca catcatttaa ttgtgaactc gcctactcac ttcttcgatc acttttcctt
     2521 gcatattgcc tggaatagtt gtattcataa tatcaagtat cgtaggagcg atatcataga
     2581 tactcatttt attcaattta ctaccatgat taaacttgtg ttttttatat aagataaata
     2641 ctccatccat ccaatgaaca gaatcgtctg gacctgcatc attttctgat aaatacaggg
     2701 cgttgtgtcc tattgttcct gcagagcgcc aaaatagatt gtcaaaataa actatgagat
     2761 caggttttga accattagac tccttataaa gatcttctgg acgaaatact ttgttatcga
     2821 atacctctcc ttctggacct gctatagtga gaagttccgc ctttaattct tctctaacta
     2881 tgttgaattt atccataggt attttaccat ttgactccct gcctttaaca ttaaaaaata
     2941 ttctggcata atatccgccc cagccccaag ccgtcgtctt ctcccaatcg acttcgcaat
     3001 tatctagatc agtaacagaa tttgggtatt tctttaatac aaggtatcct ttgttaatca
     3061 accattcatt aatacagaag gcacctttca tactagcagt accatgatcc gacaccaata
     3121 taacatatgt atcatcatcg atggttgata agatttctcc aatcctttca tcaacatact
     3181 tatagtattc gggaatgact ttgcggtatc tattatttgg ctcatatttt ggatgggtgt
     3241 tatcataata cttccagaac atatgatgca gcctatcaaa gcctatctct acaaacataa
     3301 agtaatccca tatctctttc tttatcaggt gcttgattac tttgaatctt ttctctgtca
     3361 tttcatataa cttatttaat gcttcgtcac gatcctcaat tctaaaagaa atatcaaata
     3421 cataattacc tccaagtaaa ttttcaatct cactggccag ctgaggggga tatgtaaaat
     3481 ttttgctgcc ttttggagta agagagcaag aaatcaaact accgttgact ttgggcggag
     3541 ggtagcttgg aggtatacca atcaagcaga ccttctttcc atctcttgcc aataaatccc
     3601 atagacgtgg ttcccttatt gatagggaat ttgcaatcca tgcctcagtg tatgaaaaac
     3661 ctttacgttg tctccaacca taaatcccta attcgcctgg acttctgctt gtcatcatga
     3721 ccatccatgc agggatagtt atcggtggat gacaactctc aagtgttgca aaaaggcctt
     3781 tatccatcat cgcctttatg tttggcagat attcaattag gtcattgaaa agaagatttg
     3841 ccggggttcc atctagacca ataactaata ccttcggctt gacactagcc atttacctat
     3901 gaacctcatg tcccggtaat tatatatgag ttttttgtaa catagttaag ctatatgatc
     3961 ccaacttggg gaagatcact atgatcaaag agaaactata aattggaatt tttcacttta
     4021 tgaaaatatt gtcccgaaat aaagtttctc tgcctttatt tatatctgtc gttgttgtga
     4081 ttctaagtac tattttacat tcaacttttt atgcaaatac tgctactgca gcagcagcgg
     4141 cagttaatag tactactact aatactgccg gttcttcctc ttctcataaa tcctctggtt
     4201 gtaattgtgt tgcctttaga atagatgatg tatctgataa taatagagtc ggtaatcttg
     4261 ccgtgctgaa cttattctta tctgaaaatg aacctcttac ccttggaatt gtaatgaatc
     4321 atatcggccg aagccccgtt ctgatggata aaattatgga gggagcaaac aaaggcctat
     4381 ttgaattagc cttgcatgga tatgatcatc tcaactatgt aaaattagcc ccgcaagaac
     4441 aaatggacca actatcaaaa gccaacgaac gaatgaatga tttgtttggt aaaccttcca
     4501 agatctttgt tccaccctac gatacattca ataactacac cgtcaatgca ttgagtcgat
     4561 taggcatacc gataattagt gctggagatt ttgagtataa tggcactcag tctcagtacc
     4621 atattttttc tacgattaat cctgttgcac atgatcctaa aagcaatcag gtttaccatc
     4681 tggctcgcag tactggcatt gaagattttg gagataataa cttgccaatc aaactacctc
     4741 tccaaacaac tctcaatcgg gcttacgctg ctatatcaaa atatggttat gcaataatcg
     4801 tgatgcatcc aacaagtttt ctaacaatga agaacggaaa gtatactaac atggttgatc
     4861 aaaacgaaat taataacgtc aaaag
//
LOCUS       DASQSJ010000072         5524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_8946, whole genome shotgun sequence.
ACCESSION   DASQSJ010000072 DASQSJ010000000
VERSION     DASQSJ010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5524
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8946"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..208
                     /locus_tag="VE223_01510"
     CDS             <1..208
                     /locus_tag="VE223_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20300.1"
                     /translation="INTQEKPFSNLQSFKNALAGKFGSIVETINDGEVIVSYHLIKTH
                     SNNWVLLLLQPYDKFVDELAQEHD"
     gene            complement(407..1141)
                     /locus_tag="VE223_01515"
     CDS             complement(407..1141)
                     /locus_tag="VE223_01515"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZC20301.1"
                     /translation="MSISNKYYSDSCTEWSSPEYVLDYLRVADKIPHRNEGEQVLLEY
                     IPKDAKKILDLGTGDGRLIKLLRSKQEQQRNERQHQQLSLPLSLIIIAIDVSPAMLEK
                     ARNYFKDDNSIRIIEHDLSYPISDKLITEEKEKESERQFDAIISGLAIHHLTHERKYS
                     LYKEVYNLLKPGGVFCNLDHVASPTPRLHKQFLAKTTYKKEDKSNKLLDIQTQLKWLE
                     EIGFIDVDCYWKWLELALLIGIKPVH"
     gene            complement(1720..2688)
                     /locus_tag="VE223_01520"
     CDS             complement(1720..2688)
                     /locus_tag="VE223_01520"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HZC20302.1"
                     /translation="MNAVRIHKFGGGPQDLVYEEDVMQPPHPKQGEVLVKVYATGVTR
                     NEIVWVWSNPDISLPIILGHELSGIVEEVGPKVTNQRVGEAVYGLTDTLSVTRDGAEA
                     DYVIAIDSEIAPKPQSLDHEYAAGVPMAGLTAWQALFDHAHLSSKDTILIHGAAGGVG
                     SFAVQLARWTGAHVIGTASVYNFSFLKDLGVNEVIDYKKTSFEDRVHDVDVVFDTVGG
                     KMLERSWQVLRKGGKLVSVTSQNVPTTFDKLQAYFKEKGDSYGIDATWFIVHPSRDQL
                     IRIGDLIDSGRVKPIVDTILPLSQASQAYEGAKGVHKHGKIVLRVR"
     gene            complement(3042..3629)
                     /locus_tag="VE223_01525"
     CDS             complement(3042..3629)
                     /locus_tag="VE223_01525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20303.1"
                     /translation="MERIGVPRVLWLNFLQQSAFNNPITNIGLLANQRWFNKQIDPDA
                     FYTSIEEIFAAFGPPYGAADNKIVANGFFWSSLAINTLLRSREYSDKPTQNECSNKEE
                     EITQYSYLHNESTLLMLGLMVLSWLKVNLKKKTENGHCHNPAHRTNEANKPANCPIGS
                     DFHRKLYSNYISILEDFVESVKDCSPTAIASSSQQ"
     gene            complement(3824..4222)
                     /locus_tag="VE223_01530"
     CDS             complement(3824..4222)
                     /locus_tag="VE223_01530"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HZC20304.1"
                     /translation="MKYNDLTLIDMAKLVEMDDNVKFSSQLEEHVGPIVFVNKFSVNP
                     EDFDEFLKAWEADATYFKSQPGLISTQLHKGIGASGTFINYAIWESTAQFKKAVYNTD
                     FNTRLSNYPASTIISPHIFKKVAVPGICVE"
     gene            complement(4573..4965)
                     /locus_tag="VE223_01535"
     CDS             complement(4573..4965)
                     /locus_tag="VE223_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20305.1"
                     /translation="MNRDNKKRILLVDDEQDITFTFSIGLEENGFVVDTFNDPQKALS
                     SFKAGLYDLLLIDVKMPKMNGFELYRDIEKIDDKPKICFITAFEVYYKSLRELFPTMK
                     VDCYIKKPITTDELVERIKSELAVTSSP"
BASE COUNT         1662 a         1067 c          963 g         1832 t
ORIGIN      
        1 cataaatacc caggaaaaac ctttttctaa ccttcaaagc ttcaaaaatg cattggcagg
       61 aaagtttggt tctattgtag aaacaattaa tgacggtgaa gtaattgtat catatcacct
      121 aataaaaacc cactcaaaca actgggttct tcttttactc caaccatatg acaaattcgt
      181 tgatgaattg gcgcaggaac atgattaata atgctatgat tttcagaaat aagcagggct
      241 gtgttaactt aacgataaag ttagagccac gaagattctt ccacattttt gatgagttta
      301 gttagacgca cattgggggc tcctcaagcc attgctttct atgtggcgga ccgatttaca
      361 ggttgcagat aatcactata aatcgtattc ttattttcaa accatttcaa tgaaccggtt
      421 taatgcctat caagagtgct aattcaagcc acttccaata acaatctaca tctataaaac
      481 caatctcttc taaccacttg agctgcgttt gtatatctaa taatttattg gatttatctt
      541 cttttttgta tgttgtcttt gccaagaatt gtttatgaag gcgtggtgtt ggagaagcaa
      601 catggtctaa attacaaaat actcctccag gctttaacag gttataaacc tccttgtaaa
      661 gcgaatattt acgttcatga gtcagatgat gtattgcaag accagaaatt atggcatcga
      721 attgtctttc tgactctttt tctttttctt ctgttattaa cttgtctgag ataggatacg
      781 aaaggtcatg ttctattatc cttatactat tatcgtcttt aaagtaattt ctcgcttttt
      841 ctagcatagc aggtgagaca tcaattgcga taattatcaa cgataatggt aacgacaatt
      901 gttgatgttg cctttcattt cgttgttgtt cttgttttga ccttaacaat ttgattagtc
      961 taccatctcc tgttcctaag tcaagtattt tttttgcatc ttttggaata tattcaagga
     1021 gaacttgctc tccttcgttt ctgtgtggaa tcttgtctgc aactcgcaaa tagtccaaaa
     1081 catattccgg tgacgaccat tcagtgcaag agtcagaata gtacttgtta cttatgctca
     1141 caatattgaa aacagaagtt gcgaatatat aaaagcatga cacctttctt attttgaaag
     1201 tactggtgca cgtacacatg caaggagcat gtacacattc gtagctcgtg caagattaga
     1261 tcatttcttg tattaaagaa ttcttggaat tttcaaaact taaatctata ttctgtgata
     1321 tgcaatgttt ttcatatagc cattcctccc atagatattt ggaaaagttt ctagccaaat
     1381 actaactttt gttcattagg gaggccctcc aagaattgaa gattgcatat taaatcagta
     1441 ttctcaaggt agaacttttg ttttcgttca gaaatgccct tttctcagtt caaatttttt
     1501 aaagaagcga tcagggaaaa aggctaatca agcttacaga gtccatcaat atggtttaat
     1561 catttctcac ttgcctatat agcagcagaa taccaggcac gacaacagca tacttgtgca
     1621 catacgtttt gttctactga tatcgttgat attgtagata atactgcaac tagagctatg
     1681 tattgtttca tgcttgttta cagcctttta ggttgtaagt catcttacac gtaagactat
     1741 tttgccatgt ttatgaacac cttttgcacc ttcataagct tgacttgctt gggaaagagg
     1801 aagtattgta tccacgatag gctttacccg cccagaatca atcagatctc caattctgat
     1861 aagttggtcc ctgctgggat gaacaataaa ccacgttgca tcaatgccat atgaatctcc
     1921 tttttctttg aaatatgcct gaagtttatc aaaagttgtg ggaacgtttt gactagttac
     1981 agacacgagc ttacctcctt tcctaagtac ttgccaagat ctttcaagca tttttccacc
     2041 tacagtatca aatactacat ctacgtcatg tactctatcc tcaaagcttg ttttcttgta
     2101 gtcaatcacc tcgtttactc ctaaatcttt taaaaaactg aaattgtata ctgaagctgt
     2161 tccaatgaca tgtgctccag tccatcgagc aagttgtact gcaaagctac ccacgccccc
     2221 agctgctcca tgaatgagta tcgtatcttt tgatgacaga tgtgcatggt cgaaaagtgc
     2281 ctgccatgct gtaagcccag ccattggaac acccgcagca tattcatgat caagagactg
     2341 tggttttggt gcaatctctg aatctatcgc gataacatag tctgcttctg caccatcacg
     2401 tgtgactgat aaagtatcgg ttagtccata tacagcctca cctaccctct gattggttac
     2461 tttaggacca acctcttcta caatgcctga aagttcatgg cccaaaatta taggaagaga
     2521 aatatcagga ttagaccaga cccaaactat ttcatttcgt gtaacgcctg tagcatagac
     2581 tttaaccaaa acttctcctt gtttgggatg tggtggttgc attacatctt cttcataaac
     2641 aagatcctga ggtccacccc cgaacttatg gatacgaacc gcattcatac cccaataact
     2701 gcgtcaatgt ctcaatatat gtcttatatg gtgtgaactg gctcacttat tggataactg
     2761 aggtaacaca agtccatagt tctgatttca ttaattatat gctaaatctc actttcaaat
     2821 taatacaccc cttgttaaat gcatggtatg gcaacccgat gaccgatttg gattggttgg
     2881 catatgtgca ataattttgc ttatagtatc agtaatacta catattatca aatctatttc
     2941 ttgcagctta tggattgatt tattcaaatt ggtttgcttg atgtcttcac ttattgtcat
     3001 tccttgacat tgcatttctt gaatgagttg atagatttga attattgttg acttgatgat
     3061 gctattgcgg taggactaca gtcctttaca ctttccacga aatcttccaa gatcgatatg
     3121 taattagagt ataactttct gtggaaatcg ctcccaattg gacagttcgc tggtttatta
     3181 gcttcatttg ttctatgagc agggttatga caatgtccat tttctgtttt tttcttaaga
     3241 ttgactttta gccatgatag aaccattaaa cctaacatca gcagagtgct ttcattatgt
     3301 aaatagctgt attgggtgat ttcttcttct ttattactac attcgttttg agtgggcttg
     3361 tcagagtatt cacgacttcg taaaagtgta tttatcgcca atgaagacca gaaaaaacca
     3421 tttgctacga ttttgttatc agctgctccg tatggggggc caaaagctgc aaaaatctcc
     3481 tctatagatg tgtagaacgc atctggatca atctgtttgt taaaccatct ttgatttgcc
     3541 aatagcccaa tatttgtaat tggattatta aacgcagatt gttgtagaaa attcagccac
     3601 aggacgcgag gtactcctat ccgttccaat atgcatatgc tatattctta gttgaagatg
     3661 ctctgctata ttgtagcata caaacaatgg ctgcaactat acttttgctt tacactagga
     3721 tttaatgcct tcgacttagg gggttcagct acttttacat ataccaaaaa atgttaatga
     3781 atgcacaagt tcaatacgta cattgtagac ctgataaaca attttactcc acacagattc
     3841 caggaactgc cactttcttg aagatatgtg gagatatgat tgtgctagca ggataatttg
     3901 atagtcgtgt gttaaagtca gtgttgtaaa cagccttctt aaactgtgca gtagactccc
     3961 aaattgcata gttaatgaat gtaccacttg caccaatgcc tttatgaagc tgagttgaaa
     4021 tgagcccggg ctggctctta aagtatgtgg catctgcttc ccaagccttt aaaaattcat
     4081 caaaatcttc agggttcaca gaaaacttat tgacaaagac aattgggcca acatgctctt
     4141 ccagttgcga tgagaatttt acattgtcat ccatttcaac gagctttgcc atatcgatta
     4201 aagttaagtc gttgtatttc aactttttaa tgcatatgaa tagcacaagt gatagctttt
     4261 tttactatgg aggttagaga ttttaccggc ttgagtcatt atagctgcaa caatcagata
     4321 cgagctaaat attcatgctg tattagagat atagatcata ccaccgatag cgctttgcac
     4381 tatgtcagca acaagaacaa caatgagcgc gccataaagg gttagctata gactcaacga
     4441 ctactacaat aacaacaaca aaccaagttt tctgaacact tttgcttttt agtacacaac
     4501 atacacaaca gttcaatggc cttggtaatt ggtagtcgaa tatctcatga taaaatagat
     4561 aataatgcag ggttaaggag aagaagtaac agcaagttct gattttattc tttctactaa
     4621 ttcatcagtt gtaattggtt ttttaatata gcaatctacc ttcatggttg gaaatagttc
     4681 ccttaatgac ttgtaatata cttcaaatgc tgtaatgaag caaatctttg gtttatcatc
     4741 tatcttttct atatctctat ataactcaaa accattcatc tttggcatct ttacatcaat
     4801 aagtaacaga tcatataagc cagctttgaa acttgataat gctttttgag gatcattaaa
     4861 tgtatcaact acaaatccat tttcttctaa acctatgcta aaggtaaatg taatatcttg
     4921 ttcatcatct acaagcaata tccttttttt attatctcta ttcattgtct ttgttcttca
     4981 attacgattc tctcttatga tatttgcgta gtagttaaac tgggactgtt gcccaatgct
     5041 acgaccacag ataggtcttt gacctacatt aaagtcataa agtcgtcggt aaaagtgagg
     5101 attataaaaa agaactagat caaggcaaaa cctaaagata cccatccagt aataatgcct
     5161 gcccgctcaa agcgatgttt aaagacttac aaagagattc aaataacgag atatttacaa
     5221 gactgcggaa taaatatggt agaggagcgt attttgtata tgatacaatt ttttgaggaa
     5281 gcaaatgcag tactgaccat accagcaaat cagtagaact gaaagcatca tctactatgg
     5341 tggcaaaggg aagtaaaagt ctgaaaacgg ctagtgcttc tatatctgtt tcataaaggc
     5401 gcttgggctc aagcgcctat ctcgtatata aagaaaacgc tgaaaaacgc tagttttaaa
     5461 agcgcttgac ctcgagcgct tttgtacttg gggtttcgcc taaactatcc ctgacggtca
     5521 aaac
//
LOCUS       DASQSJ010000073         2154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_521665, whole genome shotgun sequence.
ACCESSION   DASQSJ010000073 DASQSJ010000000
VERSION     DASQSJ010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_521665"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1269
                     /locus_tag="VE223_01540"
     CDS             <1..1269
                     /locus_tag="VE223_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HZC20306.1"
                     /translation="KYSKHKVPGHTSDMQINFEIMPSDKKTLEDAAGILNSGRKVVIL
                     VGQGALNAGNEIIVVAQKLNAPIVKALLGKAVVGDDNPYNIGVLGILGTEPASDAMNE
                     ADTLLMVGTSFPYIEYLPKPGQARGIQIDIKPERIGLRYPIEVGLLGDSKVILSALIP
                     LLDNKKQDDDSFLREKQQAMQQWVKKLQQFRNINNNSSSNKAIKPQVIAAAVSEELED
                     NAIISVDSGTNTFWAARHINVRKGMKFSVSGTLASMACGLPYAIAAQLTYPERQCIAF
                     VGDGGFMMLMAEFSTAVQYNLPIKVIILKNNTLGMIRWEQMGFLGNPEYGVEFTPIDF
                     AGFAENCGGKGYRIKKPEDVKSVMQSAMSKDKERKPVIIETYVDPFEPMVPPKAKPEF
                     IQKISESFTKGQPYSQRIGLTLYRNKFEAV"
     gene            complement(1830..2045)
                     /locus_tag="VE223_01545"
     CDS             complement(1830..2045)
                     /locus_tag="VE223_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20307.1"
                     /translation="MICQSGISTAICTHQHTPQYDSGFTAGCHDKRAGLLQRDPETNP
                     IVPNINNDTNWMQGYMDAAADTSFCPS"
BASE COUNT          730 a          363 c          431 g          630 t
ORIGIN      
        1 aaatactcaa agcacaaagt acctggacat acatctgaca tgcagattaa ttttgaaata
       61 atgccttcag ataaaaaaac actagaagat gctgctggga ttttaaattc gggcaggaaa
      121 gtagtaattc ttgtggggca gggtgcatta aatgctggaa atgagataat tgttgttgcc
      181 caaaaattaa atgctccgat tgtaaaagcg cttttgggaa aggccgtagt tggagatgat
      241 aatccatata atattggtgt attaggaata ctggggacag aacctgctag tgatgccatg
      301 aatgaagcag atacgttact catggtagga acatcatttc catatataga ataccttcct
      361 aagccaggtc aggcaagagg aattcaaatt gatatcaaac ctgaaaggat aggattaaga
      421 tatccaattg aagttggtct gttaggcgat tctaaagtta ttctttctgc attaattcct
      481 ttacttgata ataaaaaaca agatgatgat tcgtttttaa gagaaaaaca gcaagcaatg
      541 caacaatggg ttaagaaact gcaacagttt agaaacatca acaataatag tagtagcaat
      601 aaagctatca aacctcaggt catagcagct gctgtttctg aagaattgga agacaatgcc
      661 attatctctg tagatagtgg gactaatact ttttgggctg cacgtcatat aaacgtcaga
      721 aagggaatga aattttcagt ctctgggacc ctcgcatcta tggcttgtgg tttaccctat
      781 gcaattgctg ctcaactaac atatcctgaa agacaatgta tagcttttgt aggagatggt
      841 gggtttatga tgcttatggc cgaattctct acggcagtac agtacaacct tcccattaaa
      901 gtcattattc ttaaaaataa tacgcttgga atgatcaggt gggagcaaat gggttttctt
      961 ggtaatcctg aatatggagt tgaattcaca cctatagatt ttgcaggatt tgctgaaaat
     1021 tgtggaggaa aaggttatag aataaagaaa ccagaggatg taaagtcagt tatgcaatct
     1081 gcgatgagca aagataaaga aagaaaacca gtaattattg aaacctacgt tgatccattt
     1141 gaaccaatgg ttccaccaaa agcaaagcct gaatttattc aaaagatatc agagtcattt
     1201 acaaaaggac aaccatattc ccaaagaata ggattaacct tatacagaaa taaatttgaa
     1261 gctgtatgag cctatgtata gtgcgtctga tattaattag tcctgatatc ctttgggtat
     1321 ttttcgttct actggtaatg aaagcacaaa ttcaagagta tctttaggga tttgtggatt
     1381 tacttagagc attcttgtct atcttctggc aacaacagta acgctgactc cgaaaaatat
     1441 aaacaatcta tgaaacccac tagcaacatt cagagataag tgatagcaca agagtcaaga
     1501 gaatatgtat gcggtaactg cagggatcat ggcaatacga ttgacaacag tcctctttgg
     1561 aagtcaaagt ctattgatgt attggttgaa ttatagaata tacgatttta ctttcaagcc
     1621 agtcctttta tttcaaagta agaaacaatg catacaattt ttcatattag cgcataaaaa
     1681 ggccacaaac accaatcaca aacaaaatag gatctacttt aaagaattca tttaaggcgc
     1741 ttgataatat cttgtctcct ttatattata tgctccttgt tttatacgaa acaacaatta
     1801 catattattt cggaatctat tcaagttttc taggaaggac agaaacttgt atctgcggcc
     1861 gcgtccatat atccttgcat ccaatttgta tcattgttaa tattaggtac gatggggttt
     1921 gtctctgggt ctctttgcag taatcccgcc cttttgtcat ggcagccagc agtaaagccc
     1981 gaatcatatt gcggagtatg ttgatgagtg caaatagccg tcgaaatccc gctttgacaa
     2041 atcatgctga gaactgccta tattagatgg cgaccatcca accttgaata taataagaaa
     2101 ggagaaggcc agaagcaaac cgtcatgtca tgttaatgtg atttgagaga agtc
//
LOCUS       DASQSJ010000074         6793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_128578, whole genome shotgun sequence.
ACCESSION   DASQSJ010000074 DASQSJ010000000
VERSION     DASQSJ010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6793
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128578"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1421)
                     /gene="uvrC"
                     /locus_tag="VE223_01550"
     CDS             complement(<1..1421)
                     /gene="uvrC"
                     /locus_tag="VE223_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HZC20308.1"
                     /translation="MIIGSVDDIAFMIKKQIPQNSGIYLMKDNEGKIIYIGKAKNLYK
                     RVSSYFLKQDYNNNDSNYQYNNNWKTSRLVRKVSDIDFIVTDNEIEAFLLESNLIKRY
                     RPVFNIELKDQQRYTYLKITDEIFPRLLVARRNRSGEFYGPKGKIYGPFVRGSSKFLT
                     VGLLRKLFKIRICHKLPKKPCLEYFIKNCDAPCISNVVRSEYMKNVFALQEILEGKSS
                     IEKFENDMKNEMERASALQQYEKAKEIRDTLYRLNNLRVKQKMEKAVNRNADEEYVGV
                     MKDSANGIAHIMTMRRTRGVISDSKKFEFDLVGDNSLTTFLSQYYSTVSIIPRFVYVN
                     EDIESKDTLEAAVEQLADHKVSIIKISKDFPSKEKRQLMDLLIRNLSLHTKKGYDPSI
                     VDLKNILHLHTIPTIIDCFDISNFGTSFAVGSCVRFVNGEPNKRGYRKFKINTIPGQN
                     DFAMIEEIVSRRYLLAEKSDQDQL"
     gene            complement(1418..4294)
                     /gene="uvrA"
                     /locus_tag="VE223_01555"
     CDS             complement(1418..4294)
                     /gene="uvrA"
                     /locus_tag="VE223_01555"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HZC20309.1"
                     /translation="MHDKIIIKGAREHNLKNINLEIPKNKLVVITGLSGSGKSTLAFD
                     TIYAEGQRRYVESLSAYARQFLELMDKPDVDSIDGLSPAISIQQKTTSKNPRSTVGTV
                     TEIYDYLRLLYARIGNPYCPQCDRGITSQSADSITDSILRSVRGVKNAMILAPVIQSK
                     KGTYEKVFEELNQNGFARIRLDGEIINLGDEDQQQKAKYPRLNKQKKHTIEVIVDRLK
                     ASPEEKGRLFESIQSALKVGNGLVIASIDDKDTLYSQRNACPYCGISLGDLEPRAFSF
                     NSPFGACDKCNGLGIKIEFDPELIIPDKSKSILEGAVKPWSGHFATFRSAMLRDVGKR
                     FGFDLYTPITKMTDQQLKVILYGTDENIHYKYESRYSETRWEYRGAFEGIIPNLERIY
                     KQTESESKREELMQFMRELPCDDCHGRRLRREALSVKIQQKSIMDVCDLSIDDCYKFF
                     KTLELSETKMYIAKTILKEIISRLDFLRNVGLNYLTLNRMTSTLSGGESQRIRLATQI
                     GSNLTGVLYVLDEPTVGLHQRDNARLIDTLKKLRDLDNTLLVVEHDEEVIRNSDWIVD
                     IGPGAGIHGGDIVGNGVLDEILRNENSITGSFLRGDRIVSHVKQNRKKNPEKWITVYG
                     AQENNLKSINAQFPIGCMTVVTGVSGSGKSTLVNDILFKALSRYFYDSREKPGKHSYI
                     SGLDQIDKVIGIDQSPIGRTPRSNAATYVNAFTPIRELFAKTPSAKEMGYKAGRFSFN
                     VPIGRCEACEGAGVKKIEMQFLPDVYVSCDECKGKRYNSETLSVRYKGKTISDILHLT
                     VEEALEFFANIPIIEKKLKTLSDVGLGYIHIGQPATTLSGGEAQRIKLASELSKRDTG
                     KTVYILDEPTTGLHFADVSKLLHVLKRLVDLGNTVIVIEHNLDVIASADWIIDLGPEG
                     GQSGGEIVISGTPDEIARSENVSYTGKYLKPKLLIDQIIQRGAR"
     gene            complement(4299..6281)
                     /gene="uvrB"
                     /locus_tag="VE223_01560"
     CDS             complement(4299..6281)
                     /gene="uvrB"
                     /locus_tag="VE223_01560"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HZC20310.1"
                     /translation="MLTSSRGFTLAENAFPPRGDQPEAIEKLVTQVLLKKGCQTLLGV
                     TGSGKTYTIANVIARTNKNTLVISHNKTLAAQLYAEFKEFFPNNNVGYFVSFYDYYQP
                     ESYIPQTDTYIEKDTEVNERIEKMRLEATAMLMSGEPTIIVSTVSCIYSLGSPKEWEE
                     SATTITKGMTINRKVLIHNLIESRYERNDISLVPGSFRVKGDTIDIIPGYSDDVIRIL
                     LFGDEIEKISIHDHVTMKKLKDVNSVKIFPAKHYIVDDDSRLSAAKSIKRELENWLPS
                     LPSELERQRLASRTKYDLEMIEELGYCSGIENYSRHLDGRSPGQPPYCLLDFFGKDFL
                     MVIDESHVTIPQLRAMFNGDYTRKKMLVDYGFRLPSAFDNRPLKFEEFEKYLQNVIFV
                     SATPANYEIKSSRQVVEQLVRPTGLVDPKVEVRPTRNQIQDLIQQIKIRVNKNQRTLV
                     TTLTKRMAEDLAEFLAKNDIMVRYMHSEIEGLERTEIIRQLRLGEFDVLVGINLLREG
                     LDIPEVSLVAILDADKEGFLRNNTSLIQTFGRAARNIDGMVIMYADHITDSIKNAMTE
                     TERRRRKQIQYNRKNQITPKSVIKPIPEKTAGVDLTVDTKSMARVDLMKLAIETEATM
                     KRFAEDLDFEKAIDFREKLIKIKKALGEEPTISEVS"
BASE COUNT         1883 a         1368 c         1152 g         2390 t
ORIGIN      
        1 agctggtcct gatcactttt ttcagctaat aaatatctgc gggaaacgat ttcttctatc
       61 atcgcaaagt cgttttgccc aggtatagta ttaattttga atttcctata tcctcttttg
      121 tttggttcgc catttacgaa cctaacacat gatccaaccg caaacgaagt tccaaaattg
      181 gaaatatcaa agcaatcaat tatcgtagga atcgtatgca ggtgaagaat gtttttcaaa
      241 tctactatgc tcggatcata tcccttttta gtatgaagag ataggttgcg aatgagtagg
      301 tccattaatt gtctcttttc tttgcttgga aagtcttttg aaattttgat aatgcttacc
      361 ttgtgatcag caagttgctc aactgctgct tctaaagtat ccttagattc gatatcttca
      421 tttacatata caaacctggg aattattgaa actgttgaat aatattgcga gagaaatgtt
      481 gtcaatgaat tatcaccgac caaatcaaat tcgaattttt tgctatcact tataacgcca
      541 cgggttctgc gcatagtcat tatgtgagct ataccatttg cactatcttt cataactcca
      601 acatattctt catcagcgtt acgatttact gccttttcca ttttctgttt aacgcgcaaa
      661 ttattcagcc tatacagagt gtcgcgaatt tcctttgcct tttcatattg ctgtaacgct
      721 gaagcccttt ccatttcatt tttcatatca ttttcaaatt tttcgatgct actttttcct
      781 tctagtattt cctgcagtgc aaatacattc ttcatgtatt cgctccgcac tacattactg
      841 atgcatggtg catcacaatt ttttatgaag tattccaaac aaggtttttt gggtagtttg
      901 tggcaaattc tgattttgaa tagcttcctt aaaaggccga cggtaagaaa ctttgagctt
      961 ccgcgcacaa aagggccata tattttaccc tttggtccat aaaactcacc gcttctgtta
     1021 cgtcttgcta caagcaggcg aggaaaaatt tcgtctgtaa tttttagata tgtataacgc
     1081 tgctgatcct ttaattcgat attgaataca ggtctatatc ttttgataag gttggattct
     1141 aacaagaatg cttcgatttc attatcagta actataaaat caatatcaga tacctttctt
     1201 acaagtcgtg acgttttcca gttattattg tattgataat tactatcatt attgttgtag
     1261 tcttgtttca agaagtaaga actgacgcgt ttatagagat tttttgcttt gccaatataa
     1321 attatttttc cttcgttgtc tttcattaaa taaatcccgg aattttgtgg gatctgtttt
     1381 tttatcatga aagcgatatc atccactgat cctatgatca cctcgcacct ctttgaatta
     1441 tttgatcaat tagtagtttc ggttttagat attttccagt gtaactgaca ttttcacttc
     1501 tggcaatctc atcaggtgtc ccagaaatca caatctcacc accactttgc cctccttctg
     1561 gtccaagatc tataatccaa tctgcgcttg caatgacatc aaggttatgt tcaataacta
     1621 ttactgtatt gccgagatcg actaaccttt ttaaaacatg taacaatttg ctaacatctg
     1681 caaagtggag accagttgtt ggttcatcaa gtatatacac tgtcttaccc gtatctctct
     1741 ttgaaagttc tgaggcaagt ttaatcctct gcgcctcacc accggataat gtggtagctg
     1801 gttgacctat gtgtatatat ccgagtccca catcactcag agttttcaac ttcttctcta
     1861 taattgggat atttgcaaaa aattctaatg cttcttcaac agtcagatga agtatgtctg
     1921 aaattgtttt tcccttgtac ctcacagaga gtgtttcaga attatatcgc ttgcccttgc
     1981 attcatcgca tgaaacataa acgtcaggta aaaattgcat ttcaattttc tttactccag
     2041 caccttcaca tgcttcacat cttcctatag gaacattaaa tgaaaatctg ccagctttgt
     2101 atcccatttc ttttgcagaa ggagtctttg caaatagctc ccttattggt gtaaatgcgt
     2161 taacgtatgt cgctgcattt gaccttgggg tacgaccaat tggagactga tcaattccta
     2221 ttactttatc gatttgatct aagccagaaa tgtagctatg cttaccaggc ttttctctgg
     2281 aatcataaaa ataacgcgac aatgctttaa ataagatgtc atttaccaaa gttgatttgc
     2341 cagatccaga tactcctgtt acaactgtca tgcatccaat agggaattgc gcattaattg
     2401 attttagatt attttcttgt gctccatata ctgttatcca tttttctgga tttttttttc
     2461 tattttgttt tacatgtgaa acaatcctat cacctctgag gaatgaccct gtaatagagt
     2521 tctcatttct cagaatctca tctaacacac cgttaccaac tatgtcccca ccatgaatgc
     2581 ctgcacctgg tccaatgtcg acaatccaat cagaattgcg tattacttcc tcatcatgtt
     2641 caactacaag taatgtatta tcaaggtccc gtaacttttt taacgtatca atcaatctgg
     2701 cattatctct ctgatgtaag cctacggtag gctcatcaag aacatagaga accccagtta
     2761 agtttgaacc aatttgagta gccaacctaa ttctctgtga ctccccacca gaaagggtag
     2821 atgtcattct gtttaatgtt aaataattta atcctacatt acgcaaaaaa tcgagccttg
     2881 aaattatctc ttttagtata gtctttgcaa tgtacatttt agtttcggaa agttccagtg
     2941 tcttgaagaa cttgtaacaa tcatcaatcg aaagatcaca aacatccatt atcgactttt
     3001 gttgaatttt gactgaaagt gcctctctgc gtaatctcct tccatggcaa tcatcgcatg
     3061 gcagctcgcg cataaattgc ataagctctt cgcgctttga ctcagactca gtctgtttat
     3121 atatgcgctc caagttggga attatgccct caaatgcacc cctatattcc catctggttt
     3181 cagaatacct tgattcgtat ttgtagtgta tattttcatc agttccataa agaatgacct
     3241 tgagttgttg atctgtcatc tttgtaattg gtgtataaag atcaaatccg aagcgtttgc
     3301 ctacatccct aagcattgca gagcgaaacg tagcgaaatg accggaccaa ggcttgactg
     3361 ctccttccaa aatacttttt gacttgtcgg gaataattaa ttcaggatca aattctattt
     3421 taatcccaag cccattgcat ttatcgcatg caccaaaagg agagttaaat gagaacgcac
     3481 gaggctctaa atcgcctagg ctgattccgc agtatgggca tgcattgcgt tgagaatata
     3541 gtgtatcttt atcatcaata gatgcaatta caagaccatt tcctactttc agtgctgatt
     3601 gaattgattc aaacagtcta cctttttctt ccggggatgc ttttaacctg tcaacaatga
     3661 cttcgattgt gtgctttttc tgcttgttca gccgggggta ttttgctttt tgttgttgat
     3721 cttcgtcccc aagattaatt atctcgccgt ctaatctaat tcttgcaaat ccattctggt
     3781 ttaactcctc aaatactttt tcatatgtgc ctttctttga ctgaattact ggagcaagta
     3841 tcattgcatt tttcacccct cgaacagatc tcaagataga gtctgtgatt gaatctgcag
     3901 actggcttgt aattcctcta tcgcattgtg gacaataagg gtttccaatt ctggcataaa
     3961 gtaacctcag gtaatcatag atctctgtaa ctgtacctac tgtggagcgt gggtttttgc
     4021 ttgtagtctt ctgctggatt gatattgctg gagacaatcc atcgatagaa tctacatcag
     4081 gcttatccat taattctaaa aattgtcttg catatgccga taatgactcc acataacgtc
     4141 tctggccctc cgcataaatt gtatcgaatg caagggtcga tttgccagaa ccagagagtc
     4201 cagttattac aacgagtttg ttttttggaa tttctaggtt aatatttttt aaattatgct
     4261 ctcttgcacc cttgataatt atcttatcat gcatgctctt atgaaacctc ggatattgtt
     4321 ggctcctctc cgagagcttt ttttatcttt atcagctttt ctctaaaatc tattgctttc
     4381 tcaaaatcta aatcttcagc aaatctcttc atagttgctt ctgtctctat cgcaagcttc
     4441 atcaaatcca ctcgagccat ggactttgta tccactgtta gatcaacacc tgctgttttt
     4501 tctgggattg gtttgataac cgatttggga gttatctggt tttttctgtt gtactggatc
     4561 tgctttctac gtcttctctc tgtttctgtc attgcatttt ttatcgagtc agtaatgtgg
     4621 tcagcataca tgataaccat gccatcaata tttcttgcag cgcgtccgaa agtctgtatt
     4681 aggcttgtat tgttacgtaa gaacccttct ttatcagcat ctaaaatggc aactagagat
     4741 acttcaggaa tatccagacc ttctctgagc aggttaatgc caactaacac atcaaattcg
     4801 cctagacgca attgccttat tatttctgtt ctctctaatc cttcaatttc tgaatgcatg
     4861 taacgcacca ttatatcgtt cttagctagg aactctgcaa gatcttcagc cattctcttt
     4921 gtcaaagtag taacaagagt tctctgattt ttatttactc gaattttaat ctgttgaatt
     4981 agatcctgta tctggtttct agtaggcctt acctctactt tcggatcgac caatcctgtt
     5041 ggcctaacta attgctctac tacctgcctg cttgatttta tctcataatt tgctggtgtg
     5101 gcagatacga aaataacatt ttgtaaatat ttttcaaatt cttcgaactt taaagggcga
     5161 ttatcaaaag cacttggcaa tctaaacccg taatcgacca gcattttctt acgcgtgtaa
     5221 tctccattaa acatagctcg aagttgaggt attgttacgt gtgactcatc tataaccatt
     5281 agaaaatctt tgccaaaaaa gtctagtagg cagtatggtg gttgtcctgg cgacctgcca
     5341 tctaggtggc gagaataatt ttcaattccc gaacaataac ctaactcttc tatcatttct
     5401 aaatcatatt ttgtacgtga agcaagtctt tgtctctcta gctcgcttgg taagctagga
     5461 agccaatttt ctaattcccg ctttattgat ttggctgcag ataatcttga atcatcatca
     5521 acgatatagt gtttagcagg aaagattttt acagagttga catctttgag ctttttcata
     5581 gttacatgat cgtgaatgct aattttttcg atttcatctc caaagagtag aatcctaatt
     5641 acatcatctg aatatccagg aataatatca atagtgtcac cttttactct gaaacttcca
     5701 ggtactaggg atatatcatt tcgttcatag cgtgattcga ttaagttgtg aattaacact
     5761 tttctattaa tagtcattcc ttttgttatt gtagttgcac tttcttccca ttctttaggc
     5821 gagcctagcg agtaaatgca tgatactgta gatactatta ttgtcggttc accagacatt
     5881 aacattgcag ttgcttccag tcgcattttt tcaattcttt cattgacttc agtgtctttt
     5941 tcgatatagg tatcagtttg tgggatgtaa ctttcaggtt gatagtagtc atagaagcta
     6001 acaaaatatc caacgttatt atttggaaaa aactccttga actctgcata caactgagca
     6061 gccaaagttt tgttatggga tattaccagg gtatttttgt ttgttcgtgc gataacattg
     6121 gctattgtat atgtctttcc gctacctgta actccaagca aagtttggca gcctttctta
     6181 agtaagactt gagtaactaa tttttcaata gcttctggct ggtcgcctct aggcggaaat
     6241 gcattttctg ctaatgtaaa gccccttgag cttgtaagca ctaaaagatc ctatcatcaa
     6301 aacgaacata tattgttata taatgacaga cgtctaacac tgaacacgag caatataaaa
     6361 ttggcaatta ctgtgatgcg caacaatagc cattttacct tgtagccaaa gttgagattc
     6421 tataaagtca aatcagaata ttgaaatgta attcgagatt aggatcgtta aaagtagtca
     6481 gtactgaatg actaaatttc aaaaagcttt aatttagtgg agaatcacat tatcattaaa
     6541 ttaagataat ttgactaaaa tgtagaacat tctaaacaat ctcattcgtt ctttacgtat
     6601 atgtagatac caaaattctt ttgttttacc tctatggtat taatgtcatg gaaggaggag
     6661 gaggaggagg agaacaagaa cctggctatg aagttagcaa acacaagttt atagcatttt
     6721 tggaaaatga ggccaagtta cgtgttgatg actttatagt gggcgcaatc gagattgcag
     6781 aagaggttca ttc
//
LOCUS       DASQSJ010000075         2758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_447547, whole genome shotgun sequence.
ACCESSION   DASQSJ010000075 DASQSJ010000000
VERSION     DASQSJ010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_447547"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(493..1971)
                     /locus_tag="VE223_01565"
     CDS             complement(493..1971)
                     /locus_tag="VE223_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HZC20311.1"
                     /translation="MSRPSRGILILGLAVLLAVLLSFSFLSNALAAGPNNYTKDDPAA
                     KWSCFKKDDKGNLLVNKTTGFLTPCRIDTGDNAWMLTSAALVLMMTPGGLAIFYSGLA
                     RQKNAVNTLHMVFITTGIIAIQWVLWGYSLAFGPDATGNGFIGTLDWAGLRGVLHDVP
                     SDVYGGLGGPTIPHMTYMAFQMMFAIITPALIVAALAERMKFSAFVIFIVLWATFVYD
                     FCAHWTWSLGSGGTHVGWTGALPSLDFAGGTVIHITSGWSGLVIALMIGRRLGYGKIP
                     MEPHNISLIVLGAALLWVGWFGFNAGSAGAARSNATSAFVATQVATAMAAVTWALISW
                     AHTGRASTIGAASGAVAGLVAITPASGFVSPMSSIIIGIAASVFCYGAVMFKSRRKWD
                     DALDTWGVHGVGGLVGALLTGTFAETRFTPAANGLAFGNPHQFLNNAIGAFASLAWAM
                     GVTAVIIKVMDLVWPQGIRVTPKEEEIGLDLAQHGERAYVTD"
     gene            2233..>2758
                     /locus_tag="VE223_01570"
     CDS             2233..>2758
                     /locus_tag="VE223_01570"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF001988.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HZC20312.1"
                     /translation="MRRATLYELRLTSRFIDILQKEEERIVIKFSNTPRQYVNAIRRL
                     SISEVPSLAIDDVVILENSSVMHDEAIAHRLGLIPLRTDLDRFVMPHDCDCKSTLGCS
                     KCRVLLVLDSEANEKTKVVTSGELLSEDELVKPVSNDIPIVVLAPSQKLKFEAYARLG
                     IGKDHAKWQPTSAAI"
BASE COUNT          879 a          548 c          533 g          798 t
ORIGIN      
        1 gcttcacatt cgtgggatgg ttagaaaatg caaacagaag gcaaaaataa tgacaaatac
       61 tcgttagaca ttctggtagc gtctcgagaa gagaatcaga gcctcgtttt ctgtcatagg
      121 tagatcaaca tgatatatta gacgatatgt atccgaacat cttctacaac ttattgttag
      181 ttttattgca aaattttaaa aggatcaaat gttctatatt gatgaaaagc atcgctttga
      241 tattttgagc aaaaagtaaa acaggttact cactcaaaat aatgtgatgt catttccatt
      301 aggtattgaa ttgtattaat cagttaagca tgataattac atttgatcag gcatgctttt
      361 ttataccatc gatataggca tgtacttgta taatgggttt atacaatggt tcgttatact
      421 gtgatgtcaa cttctagata ctgatataaa tattgcattc ggtaaataaa taaaagagaa
      481 agggaatatt tcttagtcag tgacgtatgc tctttctcca tgctgagcta agtcgagtcc
      541 aatttcctct tcctttggag taactctgat accctgaggc cacaccaaat ccatcacctt
      601 gattattact gctgtaacgc ccattgccca tgctagagaa gcgaatgctc ctattgcatt
      661 attcaagaat tggtgtgggt ttccgaatgc aagcccattt gctgcaggag taaatcttgt
      721 ttcagcaaat gtcccagtca agagtgcacc taccagacct cctacaccat gtacgcccca
      781 tgtatcaagt gcatcatccc atttgcgtct gctcttaaac atcactgcac cataacaaaa
      841 gactgaagca gcaataccaa taataatcga agacattgga gatacgaatc ctgatgctgg
      901 cgtaatggct actaaaccag ctactgcacc agatgccgca cctattgtcg aagctcgtcc
      961 tgtatgagcc catgagatca atgcccaagt tactgctgcc attgctgttg caacctgagt
     1021 tgcaacaaac gcgcttgtcg catttgatcg agcggcgcct gcggagccag cattgaaacc
     1081 aaaccatcct acccaaagca atgctgctcc tagaactatg agtgatatgt tatgtggttc
     1141 cattggtatc tttccatagc cgagcctacg cccgatcatc aaagctataa ccagtcctga
     1201 ccaacctgat gtgatatgga ttacagttcc acctgcaaag tcaagagatg gaagtgcacc
     1261 agtccagcca acatgtgttc caccagatcc aagtgaccat gtccagtgag cacagaagtc
     1321 gtagacaaat gttgcccaaa gcacaataaa aataacaaat gcactaaatt tcatcctctc
     1381 tgctaatgca gccacaatta gggcaggtgt gatgatggcg aacatcattt gaaatgccat
     1441 gtacgtcata tggggtatgg taggaccacc taatccgcca tacacatccg atggtacatc
     1501 atgaaggaca cctcttagac cagcccagtc aagcgtacct ataaatccat tgccagttgc
     1561 atctggtccg aatgcaagac tgtaccccca taacacccat tgtatggcaa ttattcctgt
     1621 cgttatgaaa accatgtgaa gtgtgtttac tgcattcttt tgtcttgcaa ggccactgta
     1681 aaatattgcc aagccccctg gggtcatcat taatactaat gctgcggacg tcagcatcca
     1741 tgcattatca cctgtatcta tccgacatgg tgtaagaaat ccagtggttt tattgactaa
     1801 gagatttcct ttatcatctt ttttaaagca actccatttc gcagcgggat catcctttgt
     1861 ataattatta ggaccggccg cgagtgcatt agataggaaa ctgaacgaaa gtaggacagc
     1921 caagagaaca gccaggccca aaataagaat tcctcttgat ggtcgagaca ttatcacaca
     1981 gtcttctgga ggaaatataa aaaatattat aagttgtaag aaattaatta tgatataata
     2041 taaaaatgga tcttttagaa taatattaat ttatatagaa tgcaatgatt agtcccaaaa
     2101 ataaatttta ggttataaat cccaaaagag aatattataa taatatgcta caagaaagat
     2161 atttaaatat aatcatgatt attcctagaa tactaacatg aaatttttgt aattttcggt
     2221 agatttttaa ggatgcgaag ggcaacgtta tacgaactaa ggttgacttc tcgatttatt
     2281 gatattcttc aaaaggaaga ggaaagaatt gttattaaat ttagtaatac tcctagacaa
     2341 tatgttaatg ctattagacg gctgtcaata agtgaagttc ctagtttagc tatagatgac
     2401 gttgttattt tagagaactc ttctgtcatg cacgatgaag caattgctca caggttaggg
     2461 ctcatcccat taagaacaga tcttgacaga tttgtaatgc cacatgattg cgattgtaaa
     2521 agtactttgg gatgctcaaa atgtagagtc ttactggtat tagattctga ggcaaacgaa
     2581 aaaactaagg ttgtgacttc tggagagctt ttgtctgaag acgaacttgt aaagccagtt
     2641 agcaatgata ttccaattgt tgttcttgct ccaagtcaga aactaaaatt tgaagcgtat
     2701 gcaaggttag gtatcggaaa ggatcatgca aaatggcaac caacttcagc ggccattg
//
LOCUS       DASQSJ010000076         2942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_89556, whole genome shotgun sequence.
ACCESSION   DASQSJ010000076 DASQSJ010000000
VERSION     DASQSJ010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89556"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VE223_01575"
     CDS             <1..226
                     /locus_tag="VE223_01575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20313.1"
                     /translation="SLFVPFPYSLPIIMAVFILLSFYMRKRALRRMGIPGTTGMFGSS
                     SLSYYCMTCGTKHNQAACPKCGSKMKRVGS"
     gene            complement(470..1354)
                     /locus_tag="VE223_01580"
     CDS             complement(470..1354)
                     /locus_tag="VE223_01580"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HZC20314.1"
                     /translation="MIKEIAIIGAAGNMGCWFSSYFNKKGIGLCVYDLDAASLKSYSN
                     TIICKNISDCVHAADLVLICVPIKDTPSMIEQCASQMKPGAILAEISSVKNQTFTRLR
                     KLSSTIKPLCIHPMFGPGRADSKQMKILLIPVKNKENEIKISNEIFEEAAITVIPNAN
                     IHDKLIAIVLGLTHYTNIVFASIISKENFSYLREVSGTTFEVQSLLAASMFTEEPDLV
                     ASLLLENNSVTKHIQRYLCEANKIAKLIYNGNSKDLRKKYVKTRAILQQQQDIELSYK
                     VMYDIVEKLRSKIFRIIR"
     gene            complement(1383..2744)
                     /locus_tag="VE223_01585"
     CDS             complement(1383..2744)
                     /locus_tag="VE223_01585"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZC20315.1"
                     /translation="MRSEILQLTEKIIFQVNERMQISRQIGKIKNELNMEVADEKVEQ
                     DIRKSILKLSKQIGMDTKFCGRLLNTLLTESLRLQQTHNTPELSPQTHLGIFMKAKQL
                     EAAGKKIIHMEVGEPDYPPPKSVKKALITAYDNGQYHYTETKGIPKLCQAIAKKAGSS
                     ITEDQVIVTLGGRFAVFSAFASLLKPGDEVISIEPAWPAYKECAEFVGAKTNILKTTL
                     EQRWNPDLKNLQDMINGTTKMIIINYPNNPTGKILGEKTLEKIVALAQENDLFLLSDE
                     VYSDYAFAHFKSIVEYNYEKSIVVSSFSKSHAMTGFRVGYGIANKSIIAKMVKFQATA
                     LTCVAEPMQYSALAALESNSNNSIQNKRIMKRRLDLICKRLRDMSFTFVEPDGAMYVY
                     PKLKKAVDSDISLVEKLLDLGVALAPGSGFGESYRGFIRISACQPEYLLEKGLDVLEL
                     AVS"
     gene            complement(2778..2930)
                     /locus_tag="VE223_01590"
     CDS             complement(2778..2930)
                     /locus_tag="VE223_01590"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HZC20316.1"
                     /translation="MTGSEVDLKVPGRHDPCVVPRAPPVVESVVSMVLADHAIRGGFI
                     QPVLKK"
BASE COUNT          831 a          583 c          513 g         1015 t
ORIGIN      
        1 ttcattattt gttccttttc cttactcttt accaatcata atggcagttt ttatattgct
       61 aagcttttac atgagaaaaa gggcattacg aagaatgggt atacctggaa caacaggaat
      121 gtttggcagc agctcgttaa gttactattg tatgacctgt ggaacaaagc ataatcaagc
      181 tgcttgtcct aaatgtggct ccaagatgaa aagggttgga tcttgacagt aggtttggtg
      241 cattaaatta attacaatat ggctattgag aggaggacac gaactcacca ggcaacagaa
      301 tgcattgaat ccaaaattga ccaattcatc ttctattttt tcataaacat aaaaaagcaa
      361 ttgccaccta tcatggctag aaagcccgac accattgtaa cagttgtatt tttattcgca
      421 tgaacagtac taattttact gtgggtatca cataagaatt ttttatgttt catcttatta
      481 ttctaaaaat tttggatctg agcttttcaa caatatcgta catcacttta taagacaatt
      541 ctatatcttg ctgttgttga agaattgctc tcgtttttac atattttttc cggaggtcct
      601 ttgagttccc attatagatc agttttgcaa tcttattagc ctcgcatagg tatctctgga
      661 tatgctttgt tacagaatta ttttctaaca ggagtgatgc taccagatca ggctcttccg
      721 taaacatact agccgcaaga agtgactgta cttcaaatgt ggtaccggac acctctctca
      781 aataagagaa attctctttg gatattatgc ttgcaaatac aatattcgta taatgtgtta
      841 ggcccagtac tatcgctatc aatttatcat gaatgttagc atttggaata acagttatcg
      901 ccgcttcctc aaatatttca tttgaaatct taatttcgtt ttctttgttt ttgactggta
      961 ttaacagaat cttcatttgt tttgaatctg cccttccagg tccaaacatt ggatgaatgc
     1021 aaaggggctt gatggtgctt gaaagttttc taagtcttgt gaatgtttgg ttctttactg
     1081 atgatatttc tgccaatatg gctcctggtt tcatttgtga agcgcattgc tcaatcattg
     1141 aaggggtatc ctttataggt acacaaataa gtactaggtc tgcagcgtgt acacaatcag
     1201 aaatattctt gcaaattatc gtattagaat aagatttcaa agaggctgca tcaagatcat
     1261 aaacgcacag accaattcct tttttgttaa aatagctgga aaaccaacaa cccatatttc
     1321 ccgcagcgcc aatgattgct atttctttaa tcatgtgttg gtacccccaa agaactccat
     1381 ccctaagaaa cggctaactc taatacatcc aatcctttct ctaaaagata ttctggttgg
     1441 caggcagaaa ttctaatgaa tcctcggtaa gattcaccaa agccacttcc gggggctagt
     1501 gctactccca gatcaagtag cttttctaca agagatatat cactatctac cgcttttttt
     1561 agcttaggat atacatacat cgctccgtca ggttcaacaa atgtaaaaga catatcacgt
     1621 aatctcttgc aaattagatc cagtcttctc ttcattattc ttttattttg gatagaatta
     1681 ttactgttgg actccaatgc agccaaagca gaatattgca tcggctctgc cacacaagtc
     1741 agcgcggtcg cctgaaactt gaccatttta gcaataatgc ttttgttagc aattccatat
     1801 cctactctaa aaccagtcat ggcatggctt tttgaaaaag atgatactac aatactcttt
     1861 tcataattgt attctacaat acttttgaaa tgagcgaagg cgtagtcgga ataaacctca
     1921 tcactaagga gaaatagatc gttttcctgt gctaaggcaa ctattttttc tagggtcttt
     1981 tcaccaagga tcttgcctgt gggattattt ggataattta taataatcat ttttgtagtg
     2041 ccatttatca tatcttgtag attttttaaa tcaggattcc atctctgctc taatgttgtc
     2101 tttaaaatgt tggttttggc tccaacgaat tcagcacact ctttatatgc tggccatgct
     2161 ggttctatcg aaatcacctc gtctcctggt ttaagaagtg aagcaaaggc actaaaaaca
     2221 gcgaatcttc ctcctagggt gactatcact tgatcctcag tgatactact gccagctttt
     2281 tttgctatgg cttgacatag ctttggaatt ccttttgttt ctgtataatg atattgacca
     2341 ttgtcatacg ctgtgattaa agcttttttt acactttttg gtggaggata gtcgggttct
     2401 cccacctcca tatgaatgat tttttttcct gcagcttcaa gttgcttagc cttcataaaa
     2461 atacccagat gcgtttgcgg ggataattca ggagtattat gagtttgctg tagccttaga
     2521 gactcggtta ataaagtatt gaggagtctt ccacagaact tggtatccat tccaatttgt
     2581 tttgataatt ttagaattga tttacgaata tcttgctcaa ccttttcgtc agcaacctcc
     2641 atgtttagct catttttaat cttgcctatt tgtcttgata tttgcatccg ctcattaacc
     2701 tggaatatga tcttctccgt taactgaagt atttctgagc gcaatttatt tagatcttca
     2761 attttggcta tttcaaatca cttctttaat actggttgga taaatccgcc tctgattgca
     2821 tgatcagcta acaccatgga tacaacagat tctactacag gcggagctct tggcacgaca
     2881 caaggatcat gtcttcctgg aaccttcaag tcaacttccg agcctgtcaa aacatcaacc
     2941 gt
//
LOCUS       DASQSJ010000077         4596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_522011, whole genome shotgun sequence.
ACCESSION   DASQSJ010000077 DASQSJ010000000
VERSION     DASQSJ010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_522011"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VE223_01595"
     CDS             <1..197
                     /locus_tag="VE223_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20317.1"
                     /translation="GRYVSGQKRCQICEIFIKWDGLWCPCCGYRLRTKPRNLKYKAKL
                     RARKGQQEESPTTETISIRT"
     gene            214..603
                     /locus_tag="VE223_01600"
     CDS             214..603
                     /locus_tag="VE223_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20318.1"
                     /translation="MQNKVSDRILVRSVSSEESHRTFLIKFLSFQNGCFISLTEGSDR
                     IGSLCVSISSSNKVNTAKVIPSKFDSIFVSTISEKVSFMVNGICIVSLHSTKQLQLCD
                     MKAIMEEIMNLVKNEYNEIEDGRRPPS"
     gene            560..1990
                     /locus_tag="VE223_01605"
     CDS             560..1990
                     /locus_tag="VE223_01605"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HZC20319.1"
                     /translation="MNITKSRTEEGHHHRNPKHASIQRDFRSFLQTLEEENDLLRINK
                     NVNCKFELAAVVSKFEGKHAILFEQVNGSEEILVAANVVGTRKRFCLAIGAKEQKLIH
                     TRVAQAIPKASKPKKISSDRAPFCENSSKDLIKLPVVTHFEKDAGPYITSSIVFAKDQ
                     ERGNQNSSIHRLLQLDDKLMAIRMVEGRHLHRCYTFAKDHGEDLKIAIAIGVHPAVSI
                     AAAYQVAYGVDEMLIANSLLDGELTLSKSNYSQLYVPTYSEILLEGRILKDRTEEEWM
                     VEMLRTYDFKRKQPIFELDRMRFRNKAILHDILPGFAEHRLLMGLPVEAKMFEAIKNV
                     VPTTKAVCLTNGGSNWLDAVVQIDKRLEGEPKNALIAAFASHPSLKIATVVDEDIDPT
                     DPVAVEYAISTRCQADKGFMIVTNVKGSSLDPSSDQQNLVTTKVGIDATSTLLKPKER
                     FEIAKIPGQEKIKISDYLHPTDNTLL"
     gene            2054..2377
                     /locus_tag="VE223_01610"
     CDS             2054..2377
                     /locus_tag="VE223_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20320.1"
                     /translation="MKPNNFAMREWHLEHVEKVIIRYIKGISPDASSFEKRNFKKYST
                     TSSCAKQIEYDIKHGVTVDEVLTLMQKIRHDKSFSELRINPETVQRLNELERQLSIPK
                     NIASW"
     gene            2963..3784
                     /locus_tag="VE223_01615"
     CDS             2963..3784
                     /locus_tag="VE223_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HZC20321.1"
                     /translation="MIIIDILKDACIQVKEQTKNLIGTAEGNKKFGVGAGGDISRMVD
                     LIAEKAVIDTIKRTDFKPTIIGEECGIIEGDQGYLIMDAIDGTTNASRDIPFYCCSLA
                     YATDNKLSSVVDATIIDLVRGDLYYSSKNKGAYLNGNKIEIRKYVNNGTENELQKNDI
                     LIGLNISGASENLMNHISKIISKANHTRHFGANALELCYFARGFMDAYIDIRGKIRST
                     DIAAAYLIVKESGGRLYSITGSELDAELGISTRLSFLAVLDENMFKSLSKDLHTS"
     gene            complement(3807..3917)
                     /locus_tag="VE223_01620"
     tRNA            complement(join(3807..3866,3903..3917))
                     /locus_tag="VE223_01620"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3843..3845),aa:Asp,seq:gtc)
     gene            4282..4369
                     /locus_tag="VE223_01625"
     tRNA            join(4282..4319,4334..4369)
                     /locus_tag="VE223_01625"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4316..4318,aa:Lys,seq:ttt)
BASE COUNT         1598 a          770 c          884 g         1344 t
ORIGIN      
        1 ctggtcgtta tgttagtgga cagaaacgct gtcagatatg tgagatattt ataaaatggg
       61 atggattgtg gtgtccgtgt tgtggatata gattgagaac aaagccaaga aatctaaaat
      121 acaaggctaa attgcgagca aggaaagggc aacaggagga atcaccgaca actgagacaa
      181 tatccattcg tacatgagcg ctgatcccta gtaatgcaaa ataaagtatc tgatagaata
      241 cttgtacgat cggttagttc agaagaaagt catagaactt ttcttataaa gtttctatct
      301 tttcaaaatg gatgttttat ttcgctaacc gaaggttctg atagaattgg atcactctgt
      361 gtttccataa gttcttcaaa taaagtcaat acagctaaag tgatccccag taagtttgat
      421 tctatattcg ttagcacaat ttcagaaaag gtgtctttta tggtaaatgg catttgcata
      481 gtttctcttc atagtacaaa gcaattgcaa ctttgcgata tgaaagcaat tatggaagag
      541 attatgaact tagtaaagaa tgaatataac gaaatcgagg acggaagaag gccaccatca
      601 taggaatcca aaacatgcta gtattcaaag ggactttcgt tctttcctac agactctaga
      661 agaggaaaat gatcttttaa ggataaataa aaacgtaaat tgcaaatttg agctcgcagc
      721 tgttgtaagc aaatttgagg gaaagcatgc aatattattt gaacaagtaa acggtagcga
      781 agaaatccta gtagctgcca atgttgtggg aacacgaaaa agattttgcc ttgccatagg
      841 ggcaaaagag cagaaattga ttcatacacg tgtagcacaa gcaattccca aggcatccaa
      901 accaaaaaag atttcatctg atcgtgctcc attctgtgag aactcctcaa aagatttaat
      961 caaactacca gtcgtaactc attttgaaaa agatgcaggt ccatacatta catcttcaat
     1021 agtttttgca aaagatcagg aaagagggaa ccaaaattct tccattcata gactattaca
     1081 attagacgat aaacttatgg cgattagaat ggtagaaggt agacacctac ataggtgcta
     1141 tacattcgca aaagatcatg gagaagacct aaagattgca attgcaatag gagtgcatcc
     1201 agcagtaagt atcgcagcag catatcaggt tgcgtacggc gttgatgaaa tgttaattgc
     1261 aaattcgcta cttgatggcg aacttacctt aagcaagagt aattattccc aactatatgt
     1321 tccaacttat tcagaaattc tccttgaggg caggattcta aaagatagga ctgaggaaga
     1381 gtggatggtt gaaatgctaa gaacctatga ttttaaacgt aaacaaccca tcttcgaact
     1441 agacaggatg agatttagaa acaaagcaat tttacatgat attttgcccg gtttcgcaga
     1501 gcataggcta ctaatgggat tgccagtaga agcaaagatg ttcgaagcga taaaaaatgt
     1561 cgttcctact acaaaggcag tatgtttaac aaacggagga agtaattggc tagacgcagt
     1621 agttcaaatt gataagcgac ttgagggaga acccaaaaat gctctaattg cagcatttgc
     1681 atcgcatcct tccctcaaga tagctactgt ggtcgatgaa gatatcgatc caaccgatcc
     1741 tgtcgccgta gagtatgcaa tatctactag atgtcaagct gacaaagggt ttatgatagt
     1801 tactaacgtc aaaggttcga gccttgatcc atcaagtgat caacaaaatt tggttacaac
     1861 taaagtgggg attgacgcta catcaactct tcttaaaccc aaagaaagat ttgaaattgc
     1921 aaaaattccc ggccaagaaa aaatcaaaat atccgattat cttcatccaa cagataacac
     1981 attattataa gaataaaaat atcatatatc aacttaaata tccatttttg ataagagagg
     2041 ttaaggagtg tttatgaaac caaataattt tgcaatgaga gaatggcact tagaacatgt
     2101 agaaaaagtt attatacgtt atataaaagg aatatcccct gatgcatcat cattcgaaaa
     2161 gcggaatttt aaaaagtata gtactacctc gagttgtgct aaacagatag aatatgacat
     2221 aaaacatggc gtcaccgtag acgaggtgct aacactgatg caaaaaatta ggcatgacaa
     2281 atctttctca gaattacgta taaatccgga aactgtacag aggctcaacg agcttgaacg
     2341 tcaactttca attccaaaaa atatagcatc ctggtaacaa gtctataata ccatctgcta
     2401 gtaaaacctt catttaatca aggatctatc ttctgtgata gatgctttcc gaatgattct
     2461 acaacttatt aaacctgacc tgtttctctt ccaagtcaat agaggactca acattgccaa
     2521 tgtcgaatcc tatgagcatt ctcttttatt tttatttttc ttttctttct gctggataga
     2581 tgttttgaga attcaaccca atcttcagtg ttgtgcttta acgccatctc aaacaaacaa
     2641 tatgattgca ccaatcctat caaaatgtac ctacatcaag ttaaaataag agcagctata
     2701 gaaatagaac gccggtcggt aaaattaatc agaaaactca cacaattaca atttttgtcc
     2761 taaagccaaa tcggttaaat tcaagtatcc gtcaatatat gaaatttagt taaaccatag
     2821 atctaatgga gatttattaa ttattttaat ttgaataggt gtatgaaaat gtatcagaat
     2881 tagagttagg ccttgtctcg ttaatttcag atggatacca cttggtataa tcttttatta
     2941 agttgagaca ggatttaagt ttgtgataat aatagatatt ttaaaggatg catgtataca
     3001 agtcaaggag caaactaaaa atcttattgg aacagcagaa ggcaacaaga aatttggagt
     3061 cggcgcagga ggagatattt ccagaatggt tgatctcata gcagaaaagg cagtaattga
     3121 tactatcaaa agaactgatt tcaaacctac gataatagga gaagaatgtg gaataataga
     3181 aggagatcaa ggatatttga tcatggacgc tatcgatgga actactaatg ccagtcgcga
     3241 tattcccttc tactgttgtt ctctagccta tgcgaccgat aataaactaa gttctgttgt
     3301 tgatgctacg attattgatt tggttagagg tgatttatat tatagctcaa agaacaaagg
     3361 cgcctattta aacggaaata agattgaaat aagaaaatat gtcaataatg gaactgaaaa
     3421 tgagctacaa aagaacgata ttctaatagg attgaacatt tccggtgctt cagagaactt
     3481 aatgaatcat atatcaaaga ttatttcgaa ggcaaatcat acaagacatt ttggagcaaa
     3541 tgctcttgaa ttgtgctatt ttgctagagg atttatggat gcatacattg acattcgtgg
     3601 taagattcgt agtacagata ttgcagctgc atatttgatt gtaaaagaat caggaggaag
     3661 attatactcc attactggtt cggaattaga tgcagaacta ggaataagta caagactctc
     3721 atttttggcc gttttagatg aaaatatgtt taaaagtctc tcaaaggatt tacatacgag
     3781 ctaataaaat gattttattg tttaagcgcc cgggccggga ttcgaacccg ggtcggagga
     3841 gtgacagtcc cccatactgg accggatttt atgatgctag aatttgaact ctacaggcat
     3901 ctctatacta cccgggcaca cataaccaac tgttgggaaa accaattaaa tgttttgctt
     3961 tcctaatatt tgtaatattt gggagaagac agataaaatt gaattgataa aatcgattat
     4021 tattaaaatt acccgttcgt ttgatttttt ctatttttgc cctatagcgt tataatattt
     4081 aggatataaa gcactactca acaaattaga gataattttc aatactgttg caaactacct
     4141 cacttcaaat ctggtccaga tctggatccc ggatctctag gttaataatg attttactca
     4201 ttatttatat caatacatta atgattttga tcatctatgt ataaaattaa attatgctac
     4261 gtaggagcgt atctgtaaca agggcccgta gctcagccag gtagagtacc ggacttttat
     4321 ctttaagaaa gaaatccggc tgtctcgggt tcgaatcccg acgggcccgc atgtattttc
     4381 attcgaatcc gcaaggttta tagctgataa cggatctaat agtgaaaata aatgtctgga
     4441 aaaagccttg atagatctat tttacatgga gaatgtatag aattattcag agcggctatt
     4501 agaagtcctt ctacacgtga tccttatgaa agccgactta ttggcttttt gagaacaatc
     4561 aatctagtcc ctgacgactt tgttgcgatg gctaag
//
LOCUS       DASQSJ010000078         2231 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_362825, whole genome shotgun sequence.
ACCESSION   DASQSJ010000078 DASQSJ010000000
VERSION     DASQSJ010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2231
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362825"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            294..368
                     /locus_tag="VE223_01630"
     tRNA            294..368
                     /locus_tag="VE223_01630"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:329..331,aa:Val,seq:cac)
     gene            complement(408..2183)
                     /locus_tag="VE223_01635"
     CDS             complement(408..2183)
                     /locus_tag="VE223_01635"
                     /inference="COORDINATES: protein motif:HMM:NF021370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2070 family protein"
                     /protein_id="HZC20322.1"
                     /translation="MFKPTPDSVSNIHRRWSFTRLNPSSYKISYIISLLSVSCIVFMI
                     HAYDNKTDKIEILYFIILAQAFLTASCFLDFVSLHGTPLNKISKIFHISAFTSLLWLL
                     TVILGVTSELLLVKNRGSFNNYIIEGMLFACGVRIGIFISVFGAGHGRSIAVSFLQPI
                     ILLFVFESTLSYYRDLLIHPVGLEFGFAYVVISISWTIIADRAGRPGVKSTFAILQAF
                     LAAWTENKAEKMERIAESKAHREIIKTYIIKFKIINSKEISIILPEVHPGPFNPVGGS
                     NLPFVLYNLFSQKALVMHGISDHSLNIPSKREVKRYAETLSEVVVLEKGNTCTIPVQI
                     KMEESTVTGIAFGNTAMVILSMAPKGMEDVPNSIRTDIEKYSSRLGFNYILIIDSHNA
                     MGSHLTGSDKHNLLSAAKKCLEILKDAKQNEFRIGFANSDGVDSKEGLIEDLGQAGFA
                     AIAIQIRENTYAIGWADSNNMRNGLRERIILTLNDHRMEMIEICTSDTHMTSGKRTRQ
                     GYYALGDRSDHDLVTQKYLRVAKNSIEKMEVASFELVLAESNIKVMGKNQFDDYSSAL
                     DKSMNITKIFLGITLLIFISMLFVS"
BASE COUNT          713 a          426 c          403 g          689 t
ORIGIN      
        1 gccaatagta tacgatattg agaaaagtca ggatcaagaa attgctatgg caaaattggg
       61 agctatggga atagaaatag acaagctcac agatgagcaa agcagctatc tagaaggatt
      121 cagcgaaggc acctgataaa atatattcgc tcaattttaa gaccaaataa aataaggggg
      181 aaatctttat acttaaaatt tgttgtcatc cggccaacag aacagatgtc gtatgtacct
      241 cttttaactc aaaatgtaaa tacttcttta gtccacaatc tcctagtgtc tgtggatggg
      301 tagtctagct cggttaggat acctgtctca cacacaggtg gtcgagagtt caaatctctc
      361 cccatccata cgatgaaaaa ttagccatgc ctcgtgaact atctgtatta gcttacaaat
      421 aacatcgaaa taaatatcag aagagtaatt ccgagaaaga tttttgtgat gttcattgat
      481 ttgtcaagtg cagaagaata atcatcaaac tgattttttc ccattacttt aatatttgat
      541 tctgctaata ccaattcaaa actagcgact tccatctttt cgattgaatt ttttgctacc
      601 cgaagatatt tttgtgtaac cagatcatga tcgcttctat cgcctagagc atagtagcct
      661 tgtcgggttc tctttccaga cgtcatgtgt gtgtcagaag tgcagatttc aatcatctcc
      721 attcgatgat catttaatgt gaggataata cgttcacgta ggccgtttcg catgttgttt
      781 gaatcagccc aacctattgc atacgtgttt tctctgattt gtatagctat tgcggcgaaa
      841 ccagcttgcc ctagatcctc aatcaatcct tccttagaat caacaccatc tgaattagca
      901 aaacctattc tgaactcatt ttgttttgca tccttcagaa tttctaagca ttttttagct
      961 gctgatagta gattgtgttt atcggatcca gtcagatgac tgcccattgc attatgactg
     1021 tctatgataa gaatatagtt aaaaccaaga cgcgaagagt atttttctat atcagtacgt
     1081 atactatttg gcacgtcttc cattccttta ggagccatcg atagaataac catggcagta
     1141 ttaccaaatg caattcctgt tactgtactc tcttccattt tgatttgaac cggaatcgtg
     1201 caggtattac ctttttctaa taccactact tcagagagtg tttcagcata tctttttact
     1261 tctcgcttcg agggtatatt gagcgaatga tccgatatac catgcataac taatgccttc
     1321 tgggaaaaca gattatataa tacaaaaggc aagttacttc ctccaacagg attaaatgga
     1381 ccaggatgta cttctggtag tattatagat atttccttgg aatttataat tttgaatttg
     1441 ataatatatg ttttgatgat ttctctatga gcttttgatt ctgcaattct ctccatcttt
     1501 tctgccttat tttcggtcca tgctgcaaga aaggcttgca atatagcgaa agtgctctta
     1561 accccaggcc ttccagctct atctgcaatg attgtccaag aaatactgat tactacatat
     1621 gcaaaaccaa attccaatcc tactggatgt attaagagat cacgataata agacaaagta
     1681 ctttcaaaga caaaaagaag aattataggt tgaaggaatg agacagctat ggatctacca
     1741 tgtccagcac caaaaactga aataaatata cctattcgta caccgcaagc gaataacata
     1801 ccttcaataa tatagttatt gaatgaacct ctattcttca caagaagaag ctcggaggtt
     1861 actcccaata taaccgtgag gagccaaaga aggctggtga atgcagatat atgaaaaatt
     1921 ttcgaaattt tatttaaagg tgtcccatgg agtgacacga agtccaaaaa acacgatgct
     1981 gttagaaaag cttgagcaag tattatgaaa tacagaattt caattttatc tgtcttgttg
     2041 tcataggcat gtatcataaa tacaatacat gatacagaca aaagagaaat gatataggag
     2101 attttatatg acgatggatt gagccttgtg aatgaccaac gtcgatgaat attagatacg
     2161 ctatccggcg tcggcttgaa catgtaccga gatccagtca accaagcgta agctagtgaa
     2221 ccgcaaataa g
//
LOCUS       DASQSJ010000079         8114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_128908, whole genome shotgun sequence.
ACCESSION   DASQSJ010000079 DASQSJ010000000
VERSION     DASQSJ010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8114
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128908"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(270..1664)
                     /locus_tag="VE223_01640"
     CDS             complement(270..1664)
                     /locus_tag="VE223_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HZC20323.1"
                     /translation="MSNKIETINPATGKVIATYDNISSAEVSQRVKKSKAAFEKWGKL
                     DISERTAYVRSLGRVMRKNKDEYAKLITEEMGKPIRQSVAEIDKCAWVCDYYADHAES
                     FLRDELIPTEFRKSFVSFEPIGVVAGIMPWNFPFWQVMRYAVPALTAGNVGILKHSSI
                     SLGSALKIEEAFKDAGFPEDVFQSIIGDYRAGEALIQSQVDGVSVTGSINTGRRIAEL
                     AAKDLKKVVLELGGSDPFVVLEDADLHQTAHMATQARLLNTGQSCIAAKRFIVVKEIA
                     EKFSKLFVENTNAEVVGDPMNPKTTVGPLVRKNQRDALSDQVQDSKSKGARILTGGKP
                     INGDGYFYEPTIISNVNHEMDVIKEEVFGPAAPIIVVNNEEEAIIEANNTEFGLGASI
                     WTNNIERGSRLARRIQSGIVSINEMVKSDPRLPFGGTKYSGIGRELSEFGIKEFVNIK
                     SIVVKDITSKLLVE"
     gene            complement(2011..2229)
                     /locus_tag="VE223_01645"
     CDS             complement(2011..2229)
                     /locus_tag="VE223_01645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20324.1"
                     /translation="MENSKCKKCNLIIHPMFLGYHKCGYANCPVCKNPIVNSGYWYHI
                     RSHPGHENDGPPPRKNLGREKRLDKTPG"
     gene            complement(2995..3501)
                     /locus_tag="VE223_01650"
     CDS             complement(2995..3501)
                     /locus_tag="VE223_01650"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HZC20325.1"
                     /translation="MSDVLVEEGINLLYNSKIQDFNNWRMKNVTVKFDINGKSFSGRD
                     LSQAYLNGVSCIGTDFSHCNLSKANFVQSILNKANFEGANLTDALLMYAEMAECNLVN
                     SDVTRTNLMFANLQKSNLTGSKFFKTILVEANMKDVKISNVDKKDVYLKYAKIEGTLW
                     DVKDSSGR"
     gene            3641..4063
                     /locus_tag="VE223_01655"
     CDS             3641..4063
                     /locus_tag="VE223_01655"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20326.1"
                     /translation="MTRSTRRTSPFRIMFVDDEKDILSTVKRGLESNNAFKVDTFPSG
                     ESALQTFENHPENYYDIVITDIRMPKMNGFELYRRIKEKNPSMKIAFITAFEINKEEF
                     NKVMPSVNVIDFISKPLSISNLIAKLKTMLTSYPQSSL"
     gene            complement(4236..4697)
                     /locus_tag="VE223_01660"
     CDS             complement(4236..4697)
                     /locus_tag="VE223_01660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20327.1"
                     /translation="MRIRYWRLNTTEVLKANYPVEKVNHWDIKSTIGEYQQFGVFWFK
                     HGTPYDKEPIHGICFYYNEIPQQTVLDLIDFLQSKLGGKVLHRQTRVFLQGSKEFADS
                     QSIGRLATELSLKFNVTTEITIEFEKVTEKEKVENSLDLPSNKALPIVGPD"
     gene            4996..5508
                     /locus_tag="VE223_01665"
     CDS             4996..5508
                     /locus_tag="VE223_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HZC20328.1"
                     /translation="MSNCNNTKKYIRSQERIELLAEMEKEFDNHNIQYFKNLLDHHDN
                     VIRTRSICILADLANEDAVESIGKALITDKDALVRHEAAFSLGQLGFASAVNTLSEAV
                     ESDPSFFVRHEAAVALGVIGSENARTILNEALNDESEEVRTSAVIALSNLDYISAMKR
                     NNEFTKMTGG"
     gene            complement(5718..6788)
                     /locus_tag="VE223_01670"
     CDS             complement(5718..6788)
                     /locus_tag="VE223_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase"
                     /protein_id="HZC20329.1"
                     /translation="MRKIRYIVILTTNKKKYTIATLGSHCSLQVLKGAKDEGFRTLLV
                     CQKSRIDLYKRFKFIDDMVVVDRFDEVLGHFCQRRFKQTNSIIIPIGTLIAYMSAEQI
                     EGIASPFFGNKWILRWESDRALKQKLMEESKLTTPKAIKSKNEIQKLCIVKLHGAAGG
                     RGYFLVWNKETFEEGARKLIEKQVIDSEDDLYIQEYAIGVPTYLQYFYSPLTGAVELM
                     GVDRRYESDIDGLGRIPSKQQLGIELEPSYNVIGNFPLVLRESLLAEVYAMGERFVEA
                     AKRLVPPGMTGPFCIEGVYDREGKFTAFEFSARIVAGTNLYVNGSPYSDLIFTEPMSM
                     GRRIARELKMANRTGQINKVIT"
     gene            complement(6852..7856)
                     /gene="dph2"
                     /locus_tag="VE223_01675"
     CDS             complement(6852..7856)
                     /gene="dph2"
                     /locus_tag="VE223_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043364 - glycyl-radical enzyme activating
                     activity [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthamide biosynthesis enzyme Dph2"
                     /protein_id="HZC20330.1"
                     /translation="MITIDEKRIFETISKRKPRSVALNGPEALISKIQDSANNITERF
                     GIPVYIIGDTCWGSCDLNTHAADVLGAEILFNIGHTVAMETFGEKVVMINAYDDASFD
                     VVARKCALGLKGEKYRSISLLTDSQHLHQIACVKKIFEENDYQVIIGRGKGQLNDAQV
                     FGCEFYPAYDIQKQIDAYIFLGQSRFHCASIAMSTEKPTFMLDPYFREYFRINEYAQT
                     LQKKAILSIYKALDAKRIGIIIGLKEGQFAQVRALELKKEFEQLEKKTQLIALTDITE
                     DRLQNFKGIDAFVQVACPRISTDNHFKKPMLSVPQALALIKLLRKEPIDNFLQIRHWL
                     "
BASE COUNT         2513 a         1533 c         1352 g         2716 t
ORIGIN      
        1 atttgtcact attctagatc ggccaataga agatgaatgt aacacataca cgaccaaata
       61 acaatctcag aaagattcat tgcaaattat tgattatcaa gggtacacta atcacttcta
      121 taataattag gatactttta cagggcaaag gatatttgat taaagaaaag aatagtacaa
      181 acggcgtagg ctgccgctaa tttaatctca aatgcgaaat aaaataatgg gagtcaaaat
      241 aaccaaaaaa ggctattcct atatcgattt tactctacga gtagtttact tgtaatatcc
      301 tttactacta tcgatttgat attaacaaat tctttgatac caaattcaga taattcccta
      361 cctatacctg agtatttggt accgccaaat ggaagtctag gatcggattt taccatttcg
      421 tttattgata caatgccgct ctgaatgcgc cttgcaagac gtgaccctcg ctcaatattg
      481 tttgtccaga tacttgctcc taaaccgaac tcagtgttat ttgcttcaat gatagcttcc
      541 tcttcgttat tgacaacaat gattggagcc gccggtccaa acacttcctc ttttatgaca
      601 tccatttcgt gatttacatt tgaaattatt gttggctcgt aaaaatatcc atcaccatta
      661 ataggcttac cacctgttag tatcctggca cccttagatt ttgaatcttg cacctgatct
      721 gacaatgcgt ccctttgatt ttttctaact aatggcccta cggttgtctt tggattcatt
      781 ggatcgccaa cgacttctgc atttgtattt tcaacgaata actttgaaaa tttttctgca
      841 atttctttta caacaataaa cctttttgca gcaatgcagc tttggccggt attaaggagc
      901 cgtgcttggg ttgccatgtg tgctgtttgg tggaggtctg catcttcaag aacgacaaat
      961 ggatcacttc cgcccaattc taatacaacc tttttcaaat ctttggctgc aagctctgct
     1021 attcttctcc ctgtgttaat gcttcctgta accgaaactc catcaacttg tgattgtatg
     1081 agtgcttcac ctgctctata atctccaata atagattgga acacatcttc tggaaatcca
     1141 gcgtctttga atgcctcttc gatttttaga gcgctgccta atgatatgct tgagtgttta
     1201 agaattccta cgttgcccgc tgttaatgct ggaacagcat atctcataac ctgccaaaat
     1261 ggaaaattcc atggcataat accggctact actccaatag gttcaaatga gacaaaactt
     1321 ttgcgaaact ccgttggaat caattcatct cttaaaaaac tctcggcatg gtcagcataa
     1381 taatcgcaaa cccatgcaca tttgtctatt tctgctactg attgtcttat aggcttgccc
     1441 atttcctctg taatgagttt tgcatattca tctttgtttt ttctcattac tctgcctaag
     1501 cttctcacat aggcagttcg ctcagaaatg tctagtttac cccacttctc aaaagctgcc
     1561 ttcgatttct ttaccctttg gcttacctcg gcactactaa tgttatcata agttgcaata
     1621 actttgccgg tggctggatt gatggtttca attttattag acatactttg aggtacttta
     1681 ggatataata taaatgaaat ttttgcgtca catacataca ttgccgcgcc agatttacta
     1741 gtagatgata gtagatttta aaaattgaca cttgtcctga acagctttac cgtactagtt
     1801 gacttgcgaa acgcttgtga agtctcgcag cctcatatac acacctatgt ttcgcatatt
     1861 ctcctttgct ctatgtattg tcatctttct cttggatggt gcaaagaggt ttgcagaata
     1921 ggtagccatt ttcaggcttg tattcagatg gaataaagaa atatgcagat tgtaggatgt
     1981 attaataaat gcgaggtgtt gattactact tcaaccaggc gtcttgtcga gccttttttc
     2041 tctcccaagg tttttccttg gcggggggcc atcgttttca tgacccggat gtgatctgat
     2101 atggtaccaa taacctgaat ttactattgg gttcttgcat acagggcagt ttgcataacc
     2161 acatttatga tatcctagaa acattggatg aattattaga ttgcatttct tacatttact
     2221 attttccaaa gtatactcag ttttcttggg caccaagtac aattagggtg tatcggtcag
     2281 acaacaacag atattatgga tgcagctgca ttaatttgca tttttgtagt ctcaaaatat
     2341 aaaaagttaa aaaataagtg tcatgtcata gattctgatt gttatctatg atcaattata
     2401 tagatcctgt tcgagctatt caaaaccata cgattgaaac tgctttattg tatattgtta
     2461 atatatagac tgaaatatat ggatcaggga gaaccgggct tagattatgg tgatactaat
     2521 ttgaacccct tagtatgcga cttgtgtaaa aaaacttttg atagcttaga taaactaggt
     2581 gaacatcaaa aaacagagca tgacatgtaa tgataacaat tcattaatta tggataacga
     2641 aacattacgt caccttcgtg acattcatca atttcattat acggacatga ggattaattg
     2701 aagtagatgg tacaaaagcc tctcattatt cataatgata tatgatattc tcagcctttg
     2761 tatttcagac ccttttcaat atgtaacaga cttttcaatt tctaatccaa ccgataggat
     2821 ataccataac gaattatagc tagaacctgc gaggggtcct ggttgatcat aatgcacagc
     2881 gcaaaattac attcaggtta tcgaatagat agtgacaaaa attctcgact tacaaatttt
     2941 gattaattaa catttacttt aaaacattaa aacatgatgg ataaaataga gatattagcg
     3001 tccactgcta tcttttacat cccaaagagt tccttcaatt ttggcatatt ttaagtatac
     3061 gtcttttttg tcaacatttg atattttcac atctttcata ttggcctcaa caagtatagt
     3121 tttgaagaat ttagatcctg ttaaatttga tttttgcagg tttgcgaaca taagatttgt
     3181 tctcgttacg tccgagttaa caagattgca ttctgccatt tcagcataca ttaatagagc
     3241 gtctgtgaga tttgctcctt caaaattagc cttattaagt attgattgga caaaattagc
     3301 tttagataga ttgcaatgag aaaaatctgt tccaatgcaa gaaacgccgt tgagataagc
     3361 ctgagaaaga tctctgccag aaaagctttt gccattaata tcaaacttta cggttacatt
     3421 tttcattctc cagttattga aatcttgaat ttttgaattg taaagaaggt ttataccttc
     3481 ttcaaccaat acgtcagaca tggagttttc aaattctcta cagttatatg tatttataga
     3541 atttgggatg ccaatcagtc caaatctttg ttgtagttag aataaagatc gtctatccat
     3601 ttactttaaa tattccgatc aaacattttt atgtaccttt atgacgagat ctacacgacg
     3661 cacttcgcct tttagaatta tgtttgttga tgatgagaag gatattttat ctacggtaaa
     3721 aagaggttta gaatcaaata atgcctttaa agttgacact tttcctagtg gtgaatcagc
     3781 tttacagacc tttgaaaacc atcctgaaaa ctattatgat atagttatca ctgatattag
     3841 aatgccaaaa atgaatggtt ttgaattata ccgccgtatc aaagagaaga atccatcaat
     3901 gaaaattgca ttcataacag cgtttgaaat aaacaaagaa gaattcaaca aggtaatgcc
     3961 ttcagtaaat gtcatagatt tcataagcaa gccacttagt atatcaaatt taatagcaaa
     4021 attgaagact atgttaacta gctatcctca aagttctcta taatggtaaa gttttggaga
     4081 tattccactt gccaattacc atgtctatat gtttttgttt atctggcctc attgcctcaa
     4141 gatttttgta ggtcaaccaa gagcataaca taacatggag cggagataat tttggaagac
     4201 gtatattcta taaatggagg actttaataa taacgttaat ccgggccgac gatcggcagt
     4261 gctttattag aaggtagatc aagactattt tctactttct ctttctctgt caccttttca
     4321 aattcaatgg ttatctcagt agtaacatta aatttcaaac tcaactcagt ggcaagcctc
     4381 ccaatggact gagagtcagc aaattctttg gaaccctgta agaaaaccct tgtttgtcta
     4441 tggagaacct tgccgcccaa ctttgactgg aggaaatcta ttagatctag aactgtttgt
     4501 tgtggaattt cattataata aaaacatatt ccatgaatag gttctttatc atagggtgtc
     4561 ccatgtttaa accagaaaac accaaactgt tgatattcac cgatagtaga tttgatatcc
     4621 caatgattaa ccttttcaac tggataattc gcttttaaaa cttcggtagt atttaatcgc
     4681 caatatctta ttcgcatatt cacgagatgt aattttgaat agtatatatt ccatacacaa
     4741 aagtatctgc aataatcact gcaacaatgg agagcattct attcaacaag attcatcata
     4801 ttattaatta ctagttgtgc aggagaatta aaatatcatt gacttcagtc ttcgtcagta
     4861 gtaaatatgc actacatggc gataataacg atgatcaatt gctcctgttt tcaaattgtg
     4921 aaccgatgtg gacttattat agtagaaaaa agaatagcat tataaatgca tctctaaata
     4981 ttgatttgtg atcttatgag caattgcaat aacactaaga aatatatcag atcccaagaa
     5041 agaatagaat tattagcaga aatggaaaaa gagtttgata atcataatat acaatatttt
     5101 aagaatctac tagatcatca tgacaacgta attcgtacac gatctatatg tattttagca
     5161 gatttagcaa atgaagatgc agttgaatct attggcaaag ctcttattac tgacaaagat
     5221 gcattggtca gacacgaggc agctttttca cttggtcagc ttggttttgc tagcgcagta
     5281 aatactcttt ctgaagccgt agaatcggat ccaagtttct ttgtcagaca tgaagcagca
     5341 gttgctttgg gagtaatagg ttcggaaaac gcaagaacaa tactcaatga agcgttaaat
     5401 gatgaaagcg aagaagtcag gacgtcagca gtcattgcac tttcaaacct cgactatata
     5461 tctgccatga aaaggaataa tgaatttaca aaaatgacgg gcggataata tgaataacag
     5521 ccatcatctg ataattggat tattattact tgctgaaaca agtgaaccgt cagaattcat
     5581 tgtaaatgaa tagatcttta tcaatagttt taaagattgt caaaatgagc acccgtcaac
     5641 atcattctcg gaatagatat aaattaattt tagctttcct aacaatgctg caaattcatt
     5701 atccgcactt gcaagtttta tgtaattact ttatttattt gccctgttct atttgccatt
     5761 tttagttcgc gtgctattct cctgcccatg ctcataggtt cagtaaaaat cagatccgaa
     5821 tacggcgagc cgttgacata cagatttgtt ccagcaacaa tccttgctga aaactcaaaa
     5881 gctgtaaact ttccctctcg atcgtatacc ccttcgatac aaaaaggacc agtcatacca
     5941 ggtggtacta ggcgttttgc tgcttccaca aatctttctc ccattgcata gacttctgct
     6001 agcaaggact cccgtaaaac taatggaaag ttgcctatga cgttatacga cggttccaat
     6061 tctataccaa gctgctgctt agaaggaatt ctacccaaac catcaatgtc tgattcgtat
     6121 cttctatcta ctcccattaa ttcaaccgca ccagttagag gagaataaaa atactgtaaa
     6181 tatgtaggaa cacctatagc atattcctga atatataaat catcttcact gtctatcact
     6241 tgcttttcaa ttaattttct tgcaccttct tcgaaagtct ctttgttcca tacaagaaaa
     6301 tagccacgtc cgccagcagc cccgtgcaat ttcacaatgc ataatttctg aatttcattt
     6361 tttgatttta tagcttttgg agtagttaat ttggactcct ccattaattt ctgtttcaat
     6421 gctctgtcag actcccatcg taaaatccat ttatttccaa aaaatgggct agcgatgcct
     6481 tcaatttgtt cagcactcat ataagcaatc aaagttccaa taggaataat tatggaattt
     6541 gtttgtttga agcgtctttg acagaaatgc cctaaaactt catcaaatct atctactacg
     6601 accatgtcat cgataaactt aaatcttttg taaagatcaa ttcgtgattt ctgacaaact
     6661 aacaatgttc ggaaaccttc atcttttgct ccctttaata cctgaagaga acaatgtgat
     6721 ccaagagtgg cgattgtata ttttttctta tttgttgtca agatgacgat gtagcgtatt
     6781 ttacgcatta aatacttcgt aataaatttc ttacttatgt aagagtgaaa tttaatgggt
     6841 atccaacagg cctaaagcca gtgacgaatt tgcagaaagt tatcaattgg ttcttttcta
     6901 agcaatttaa ttagagccaa tgcttgagga actgaaagca tgggtttctt gaagtgattg
     6961 tctgtagata ttctaggaca agcaacttgg acaaatgcat cgattccttt gaagttttga
     7021 aggcgatctt ccgtgatatc tgttaatgca attaactgcg tcttcttctc taattgctca
     7081 aactcttttt ttaattctag tgctcttact tgtgcaaatt gtccttcctt taaaccgatt
     7141 ataataccta ttcttttggc gtccaatgct ttataaatag ataaaatggc ttttttctgt
     7201 agagtttgtg catattcatt gattctgaaa tattctctga aatacggatc tagcataaat
     7261 gtcggttttt cagttgacat tgctatactt gcgcaatgaa atctgctttg accaaggaaa
     7321 atatatgcat cgatttgctt ctgaatgtca taggctggat agaactcaca gccaaaaact
     7381 tgcgcatcat tcagctgccc tttgcctctg ccaataataa cttggtagtc gttttcttca
     7441 aagatttttt tcacacaagc aatttgatgc agatgctggc tatctgttag taatgatatt
     7501 gatctatatt tttctccttt tagccctaat gcacattttc ttgccactac atcaaaacta
     7561 gcatcatcgt aggcgttgat catcacaact ttttcaccaa atgtctccat tgcaactgta
     7621 tggccgatat tgaacaaaat ctccgcacca agaacatctg ctgcgtgtgt atttaagtcg
     7681 catgaccccc agcatgtgtc accgataata taaacaggaa taccaaacct ttctgtaata
     7741 ttgtttgcac tatcttgaat tttagagata agagcctcgg gtccattaag ggccacggag
     7801 cgaggtttcc ttttagaaat tgtttcaaaa attctttttt catctattgt tatcatattt
     7861 gtgcttcacc atttgagaat tggtttaact gaaactataa cctcatataa aaggtctgtg
     7921 catcgcggtt atttgaaatc tctatcagat gaaaaagatt tgtattaata ttaaaaacct
     7981 gtatgaagca tcagccaaat gtatgtaatg gacttgaaca taacaattat gcacaaatcg
     8041 aaagtcaagt ggcccacatt agctttggaa ccataaataa atccatctct agaacccggt
     8101 cctaacatta taaa
//
LOCUS       DASQSJ010000080         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_328525, whole genome shotgun sequence.
ACCESSION   DASQSJ010000080 DASQSJ010000000
VERSION     DASQSJ010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328525"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VE223_01680"
     CDS             complement(<1..884)
                     /locus_tag="VE223_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20331.1"
                     /translation="MAISIAFFGLGIGALTIHLTKNKIKRKDVLPSRILQSAIAFAVS
                     LPIFLFLIGHLIPPSTSFLYLFFLASSIPFFFAGMSMAAVYLAMPSEVTKLYFVDLAG
                     AAGATLILDPLLQGLGAESLLLLISILVTGPSLIFAGFALNHPEKMVKISAIKRTERK
                     LVLYGVLLISVCTVLFAVNLSSNILAIPPGENKGLHSLLADPSNYKDLSTQWNSFSRV
                     DVIRHNDSVNNNGSRFLASVLIDADALTPILRWNGSNSDIQWLKNFMDYMPYEISNSN
                     NNSTLVIGGGGGEDILVAL"
     gene            complement(1132..2046)
                     /locus_tag="VE223_01685"
     CDS             complement(1132..2046)
                     /locus_tag="VE223_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HZC20332.1"
                     /translation="MMPTLIVCSVCGKNKTVITDPDCGEIICSNCGMVLSDKIQDSSR
                     PEKRTFNSLDRDNRSRTGIPTSLARHDMGLATTIANTDRDASGQKIDATMRSTMNRLR
                     VWHFRTQAYTSTDKNLLQAFNELDLLKDKLSLPDASVQKAAYIHRKVQEKGLGRRRPI
                     HTVLAAVIYIACREMEIPRTIKDISRNSNIKPNEISRLYRLLVFELDIRIPLVDPMKC
                     ITMISNKVNVSKKIKHHAMSIMNDEITKSQISAGKNPLGLAASILYLSCLINNSSINQ
                     TVFAQAAGVTEVTIRNLCKNLKSKLNLK"
BASE COUNT          652 a          400 c          405 g          663 t
ORIGIN      
        1 agtgcaacta ggatgtcctc tccgcctccg ccaccgatta ccagagtact attattgttt
       61 gaattagata tttcatatgg catgtaatcc atgaagtttt tcagccattg gatatccgag
      121 ttagagccat tccatctcaa tataggtgta agagcatctg catcaataag tactgaggct
      181 aagaatctgg acccattatt gttaacacta tcattatgtc tgataacgtc gaccctagaa
      241 aacgaattcc attgagtcga taaatcctta tagtttgatg ggtcagcaag taaagaatgt
      301 aatcctttat tttctccagg aggtattgcc aatatgttag agcttaagtt gactgcaaac
      361 aacaccgtgc agacagatat cagaagaact ccatatagta ctaacttcct ttccgttcgc
      421 tttatggctg atatttttac cattttctcg gggtgattga gcgcgaaacc agcaaaaatg
      481 agtgaagggc ctgtcaccaa tatgctaatc aaaagtagca gagattctgc acccaatcct
      541 tgtagcagag gatcaagaat aagtgtggct cctgctgctc cagctaaatc aacaaagtac
      601 agcttggtta cctcacttgg cattgcaaga taaactgccg ccatggacat tcctgcaaaa
      661 aagaaaggaa tagacgaagc tagaaagaat aggtagagaa aagacgtact aggtgggatg
      721 agatgtccta tcaaaaacag gaatattggt agagaaaccg caaacgcaat agcggattga
      781 agtattctcg atggcaaaac gtcttttctt tttattttgt tctttgtgag atgtattgtc
      841 agagctccaa ttccaagtcc aaaaaatgct atagagattg ccataaaagc ataattgtac
      901 cacaatatga ttgaaaacat tctagtaagt gtaatctcaa ataataatac acccaatgat
      961 aacataaaga gagttacaaa aagaaaactc aaaataggaa agcgcaattt aaactaaaac
     1021 gcaacacatt caatatagac ctttgcaaca ctaatatggt actttcttta tgttatcgga
     1081 atggaaaaat cgtgaaatcc ctttttcata tagtaaagtt ttaacattat tttatttcaa
     1141 gttgagctta ctctttagat tcttgcatag atttctaatc gttacctctg ttactcctgc
     1201 tgcctgagca aaaacagtct ggtttatgct gctgttgtta attaaacagg ataagtaaag
     1261 aatcgaggca gcaagaccta gaggattttt tccagcagat atctgacttt tggtgatttc
     1321 atcattcatg atactcattg catggtgttt aatctttttg cttacgttga ccttatttga
     1381 tatcattgta atacacttca tcggatcgac aagtggaatt ctaatgtcga gttcgaatac
     1441 aagcagtcta tagagacgtg aaatttcgtt gggtttaata ttgctgtttc tagatatatc
     1501 ttttattgtt ctaggtattt ccatctctct gcatgcaatg tatataacgg cggccaacac
     1561 cgtgtgaatc ggtcttctgc ggcccagtcc tttctcctga acctttctgt ggatatatgc
     1621 agccttctga accgatgcgt ctggcagtga aagtttatcc ttcagtaagt ctagttcatt
     1681 gaaagcttgt aaaagattct tgtctgtgga cgtataagcc tgtgttctaa agtgccaaac
     1741 ccttaacctg ttcattgtgg aacgcatagt tgcatctatt ttctgtccac tagcatctct
     1801 gtcagtattt gcaatagtgg tagcaagtcc catgtcatgg cgggctagag aggtaggaat
     1861 gccagttcta gatctattat ctctgtctaa gctattgaaa gtacgctttt ctggtctgct
     1921 actatcttgt attttgtctg aaagtaccat accacaatta ctacaaatga tctcaccaca
     1981 gtccggatct gtgatgaccg tcttgttttt tccacatacc gaacatacaa tcaaggttgg
     2041 catcataata aagaaggagg tgttaaatta tgctattggt gtgtaaattg aatactatat
     2101 aaataaacat agttagagaa
//
LOCUS       DASQSJ010000081         2221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_129104, whole genome shotgun sequence.
ACCESSION   DASQSJ010000081 DASQSJ010000000
VERSION     DASQSJ010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129104"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..1405)
                     /locus_tag="VE223_01690"
     CDS             complement(59..1405)
                     /locus_tag="VE223_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20333.1"
                     /translation="MPYKLTTTIKNINSIPNSVNANLVSEFHRYMIENGSSERHQNNS
                     LKAIVCYARFLGPSVSFLDICKKEQVLSFLDTKIKNSEQDPEKKWINTWNDYARRIKH
                     FLRWLYNTKESNQDILQAGWITPTFAKIKEKRTKRISPYSETELWERDEILTIIKYEP
                     FKRNKAAFTLFWDLNARNHEVTLLKIKHIRLRERYGEGEIPHEAKTGTGPILLTCSFP
                     YVRDWLNEHPFRNEPDARLICNLITGAPLKPEAMWTMMKQLRYRIIRLLENDSIKDEQ
                     ERQKLEFLLKTKKWNPYCIRHSSITYDSDYLPEYALKKKVRWSMNSKQGARYIKRRMG
                     NDLKQKILVQNGIISEQQIEKKPSVLNCPRCSLVNAIDNKYCSKCSYPLIPSAFDEIK
                     EDENRKMQEIQQKYEKEMKAMREEMNQQFSHIMSMIQQNPTLAQVKPEALVKKELV"
     gene            complement(1476..1550)
                     /locus_tag="VE223_01695"
     tRNA            complement(1476..1550)
                     /locus_tag="VE223_01695"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1513..1515),aa:Arg,seq:gcg)
     gene            1877..>2221
                     /locus_tag="VE223_01700"
     CDS             1877..>2221
                     /locus_tag="VE223_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZC20334.1"
                     /translation="MDIKAGRGNDTDLGEGSSIGHYSFESTEQTFIELASEQRLSILF
                     KLSEQDTKLSKLAKDLKVTMQEVHRNVNRLMDVGLIKKNSEGTFSLTTFGNTIIKQIP
                     AYDFLSRNKEYFS"
BASE COUNT          646 a          406 c          386 g          783 t
ORIGIN      
        1 ggccgcacgg aagacatggt atatagaaaa tttctgaaag caaacagtgt agattttatc
       61 atactaactc ttttttcaca agtgcttctg gtttaacctg tgctagtgta ggattttgtt
      121 gtatcattga cataatatga ctgaactgtt gattcatttc ttctctcata gctttcatct
      181 ctttctcata tttctgttgt atttcttgca ttttcctgtt ctcatcttcc tttatttcat
      241 caaatgcaga tgggattaat ggataactgc atttagaaca gtacttgttg tctatagcat
      301 taaccaaact acatcgagga caattaagaa ctgatggttt tttctctatc tgctgctctg
      361 atattatgcc attttgaact aaaatttttt gctttaaatc attacccatc cttcttttga
      421 tatatctggc gccttgtttt gagttcatag accatcttac ctttttcttt aaggcatatt
      481 ctggtagata atcagaatca taagtaattg aagagtgtct tatgcaatat gggttccatt
      541 tcttggtctt tagtaggaat tctagttttt gcctttcttg ttcatctttg atactgtcat
      601 tttcaagaag tctaattatc ctataacgta gctgcttcat catggtccac attgcttctg
      661 gcttcaaagg tgccccagta atcagattac aaatcagtct cgcatcaggc tcatttctaa
      721 atggatgttc attgagccaa tctcttacat acggaaatga acatgtgagc aaaatagggc
      781 cagtaccagt tttggcttcg tgtgggattt caccttctcc atatctttcc ctaagtctga
      841 tatgttttat ctttagtagt gtaacctcat gatttcttgc attaagatcc caaaatagtg
      901 tgaaggcagc cttgttccgc ttgaaaggct catacttgat aatcgtgagg atttcatcac
      961 gttcccataa ttctgtttcc gagtaaggac ttattcgttt ggttctcttt tcttttatct
     1021 tggcaaaagt aggagttatc catccagcct gaagtatatc ttggttagat tctttggtat
     1081 tgtaaagcca cctcaaaaaa tgtttgattc tgcgggcata atcattccaa gtgttaatcc
     1141 actttttttc tggatcttgt tccgaatttt ttatttttgt atctaaaaat gataatacct
     1201 gctccttttt acaaatatct aaaaaggaga cacttggacc taaaaatctt gcatagcaaa
     1261 caattgcctt caaactatta ttctgatgtc tttcagaaga accattttct atcatgtatc
     1321 ggtgaaattc agataccaga ttagcattga ctgaattagg tatggaattt atatttttta
     1381 ttgttgttgt aagtttatac ggcaatatgc ataccccctt gcttcaaata caatatcacg
     1441 tcagacgtaa cttgcatatg aacccatgta gttaacgggc ccagagggat ttgaaccctc
     1501 gaccaactgc tccgcaggca gccattctat ccaagctgaa ctatggaccc ttatacacta
     1561 tccaagtatt atgaaccata tatgaactac atccatccct accttatggt aatttggacg
     1621 gattatcttt ctggagaagg aaaatagaat acagagaaca tccctgttta aaatgtcaat
     1681 gctttattat attcctagta acttttttta aattacaata tattgcgctt gaatatgcga
     1741 aggcgattgg attaagatta gtcatcatag caatgcgaca gatatatcga acaataggtg
     1801 catcatcatc gtggtatagg ctgtgtgcaa gacaccaaaa cgttcagata atagtagtag
     1861 gctatatagg agctgtatgg atatcaaagc aggtagagga aatgataccg atttaggtga
     1921 gggttcttct atcggtcatt attcattcga aagcactgag caaacattca ttgaacttgc
     1981 cagtgagcaa aggttgtcta ttttatttaa attaagtgaa caagatacta aactttccaa
     2041 gcttgctaag gatcttaaag tcaccatgca ggaagttcat aggaacgtta ataggttgat
     2101 ggatgtggga ttgataaaaa aaaattcaga aggtacattt tctctgacaa cttttggaaa
     2161 tacaattata aaacagattc ctgcctatga cttcctttct agaaataaag aatatttttc
     2221 a
//
LOCUS       DASQSJ010000082         2785 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_209811, whole genome shotgun sequence.
ACCESSION   DASQSJ010000082 DASQSJ010000000
VERSION     DASQSJ010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209811"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..432
                     /locus_tag="VE223_01705"
     CDS             <1..432
                     /locus_tag="VE223_01705"
                     /inference="COORDINATES: protein motif:HMM:NF037434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20335.1"
                     /translation="EANWCRYDSIKMDIICDTSFLMVLVSKPIKQIGKIEAYFGKLDF
                     LIPDVVISELRYLQHKTGPKRATIAKTAIEIAHSKFRIIKVVKSEHVDESIIEYAVSH
                     NCAAATIDRDLRRRLMLNRVLVLTLSKNRLVIANPKIENKS"
     gene            665..1336
                     /locus_tag="VE223_01710"
     CDS             665..1336
                     /locus_tag="VE223_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZC20336.1"
                     /translation="MVEYDGIELSWMGHDGFRIVGLDNNSNRKTIYIDPYQLSKINHN
                     KNNADILLISHNHYDHFSLDDLKQVISKRTSIVAAKECLEQLTEVDVMEVKGVEPGDK
                     LTVQGIPIEAVSSYNINKKFHPKADGKVGFVFNLSNQVVYHAGDTDVIPEMGSINPDI
                     AFVPVSGTYVMTAEEAAQAVNEFIKPKKLAIPMHYGSIVGTEKDAERFRDLVKICSTK
                     ILQRE"
     gene            1560..>2785
                     /locus_tag="VE223_01715"
     CDS             1560..>2785
                     /locus_tag="VE223_01715"
                     /inference="COORDINATES: protein motif:HMM:NF014565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004576 - oligosaccharyl transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STT3 domain-containing protein"
                     /protein_id="HZC20337.1"
                     /translation="MPHVIFIITIQQYLKKEVNGLLTIMLEGGKTLLQRAGFGFHVRH
                     LLVIAVLILAFTTAVIMRSYPVKYGFYLNEFDPYFDYRATKYIVDHGLNAYWKWHDTM
                     SWYPEGRDIAKTSQSGLHIVAAFLYSAFGRGTSLLNFTIALPVVMGSLTTIIVFALVR
                     VMGGTSAGMFAALLFAVSPAIIQRGNLGWFKSEPLGLFFGLLAMYLFISAIRHKEIKY
                     AIPKAIAGGLVLGLGNASWGGIQYFSIPVSLFLIALPFFRKDIKIPTYVAIAFTVFAL
                     ISAGAFLRPGISFVKGLPGIALIGGTIFLVGASFLVRISQPSKQTRNTLFLLAAFIAV
                     AIGVLVAGIYQPAYFRYLNAINPFLSTQNPLTESVAEHFTPTLVDYFSNYSILLMFAG
                     LGAWMAFTRRDDVSIFA"
BASE COUNT          863 a          495 c          553 g          874 t
ORIGIN      
        1 gaggctaatt ggtgtaggta tgacagtata aaaatggaca ttatatgtga tactagcttc
       61 ttaatggtcc tggtttccaa accaataaaa cagataggca aaattgaagc ctattttggt
      121 aaattggatt ttttaattcc cgacgttgta atttctgagt tgcgatatct acagcacaag
      181 acgggaccaa agcgagctac aatagcaaaa actgcaattg aaatcgctca ttctaaattt
      241 agaattataa aagttgtaaa gtctgagcat gttgatgagt ctataatcga atatgctgta
      301 agccacaact gcgccgcggc aactatagat agagatttgc gcagaaggtt aatgttaaac
      361 cgcgtgcttg tattaacatt aagtaaaaat agattagtaa ttgctaatcc aaaaattgag
      421 aacaaatcct gaacttaacg tactccacat ctaaatatga aaaactttat cattcttaaa
      481 ttgtatggca ataatctact tttccttcct gttgtcttct atgttttatt cctcacatca
      541 cagatcgtaa ctttgccaat aacgtgttta tattatgtgg cgattcaaca tgttttgata
      601 tttctgttct ggtcatcggt agaagaaact taaataatat catacaacta atcattctgt
      661 taatatggta gagtatgatg gtatagaatt atcctggatg ggacatgatg ggtttagaat
      721 agttgggctt gacaacaaca gtaatagaaa aacgatttac attgatcctt atcagctatc
      781 aaaaataaat cataataaaa ataacgcaga cattctctta atttctcaca accactatga
      841 tcacttcagc ttggatgatt taaaacaggt cataagtaaa agaacaagca tagttgcggc
      901 aaaggaatgc ctagaacaat taacagaagt ggatgtaatg gaagtaaaag gagtggaacc
      961 gggagataaa ctaactgttc aaggtatacc gatcgaggcc gtatcatctt acaatatcaa
     1021 caagaaattt cacccgaagg ctgatggaaa agttggattc gtttttaatt tgagcaatca
     1081 agttgtgtat catgctggag acacggatgt gattcctgaa atgggatcga ttaatcctga
     1141 cattgcattt gtccctgtat cgggaactta tgtcatgact gctgaagaag ctgctcaagc
     1201 agttaatgaa ttcattaaac ctaagaaact cgctatacct atgcattatg gatcaattgt
     1261 tgggacggag aaggatgctg aaaggtttcg agatctcgta aaaatatgta gcacaaaaat
     1321 cttgcaaaga gaataatgtt tgggatatat atgatacact ctataaaaag agtgtattaa
     1381 aaaacttaaa tacggtttta ttattatgta cttgaaaatg gcagcgaaga aaaaaggatc
     1441 aaagtctgcg aagaaagtca aagcaggagc aaaatccaag aagtgatctt ttagccgatc
     1501 gttcttgtgg catctccttc tcttttatcg ctatacctga tgtctactga ttttaaatta
     1561 tgcctcatgt tatttttatc attacaatac aacagtacct taaaaaagag gtaaatggac
     1621 ttctaactat aatgcttgaa ggaggcaaga ctctattaca aagggccggt tttggatttc
     1681 acgtaagaca ccttctagtt attgcagttt tgatacttgc atttactact gcagttatta
     1741 tgcgatctta tcctgtaaaa tacggatttt acctaaacga atttgatcct tattttgact
     1801 accgtgccac gaaatacatt gtagatcatg gccttaatgc atattggaaa tggcatgata
     1861 ccatgtcatg gtatcctgaa ggccgtgata ttgcgaaaac atctcagtca gggcttcaca
     1921 tagttgctgc tttcctctat agtgcatttg gcagaggtac atcactcttg aactttacga
     1981 ttgcattacc agtcgtcatg ggctccctaa ctacgataat tgtttttgct cttgtaaggg
     2041 taatgggtgg aacatctgca ggaatgtttg ctgcattatt attcgctgtc tctcctgcca
     2101 ttatccagag aggcaaccta ggatggttca agtctgaacc tcttggactg ttttttggct
     2161 tgcttgcaat gtacctcttt atctctgcca tcagacacaa ggaaattaaa tacgctattc
     2221 caaaagcaat agcaggagga cttgtacttg gacttgggaa tgcatcatgg gggggaattc
     2281 aatactttag tattccagtt tcattattct tgattgctct tccattcttt agaaaagata
     2341 taaagattcc aacgtacgta gcaattgcgt ttacggtatt tgcgttaata agtgcaggag
     2401 cttttttgag gcctggaatt tcgtttgtga aaggcttgcc tggtatcgct ttaattggag
     2461 gcactatttt tttggttggt gcaagctttt tggtaaggat aagccagccg agcaagcaga
     2521 cccgcaatac gctatttctc ttggcagcat tcattgctgt agctattgga gttctggtcg
     2581 caggaatata ccagccggca tactttagat atctgaacgc tatcaaccca ttcctctcca
     2641 cccagaaccc tctaactgaa tccgttgcag aacattttac accaacgttg gtagattact
     2701 tctcaaatta ctcaattctt ttgatgtttg caggtcttgg tgcatggatg gcgttcacca
     2761 gaagggatga tgtctcaata tttgc
//
LOCUS       DASQSJ010000083         3438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_10640, whole genome shotgun sequence.
ACCESSION   DASQSJ010000083 DASQSJ010000000
VERSION     DASQSJ010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10640"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..538)
                     /gene="rpiA"
                     /locus_tag="VE223_01720"
     CDS             complement(<1..538)
                     /gene="rpiA"
                     /locus_tag="VE223_01720"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HZC20338.1"
                     /translation="MQEAIKNLTIHAVNQKFPTDNNQVIGLGSGSTVAAIVREIAKLP
                     NKKRLEFVVTSLQIKKEAENSGLKIVDENHIPYIDIVFDGADQIDSKFNMIKGGGGAL
                     LKEKIITSAAKRVVIVADSNKFVDVFTHPVPIEVHPFARSIVWIKLEEAGGTPKLRTI
                     EKGYPFITENGNIILDTVF"
     gene            complement(594..1343)
                     /locus_tag="VE223_01725"
     CDS             complement(594..1343)
                     /locus_tag="VE223_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20339.1"
                     /translation="MLIGEILVIVFFTLLGAITGTAIFPRLFRKTSISGQEHLIKPFK
                     AAKSELQALQFEKSLISQAVTRVYEAFQEGKIDKNELERLLLKYKHQLASYEEKIRRL
                     GPVVDFAEISEIRENTISILNERIGSMDQKLAEVCKKSGMSYTDISKTIKKMQQPQSN
                     VEDESRKSKDKGEDAATNYLLTSERPKTKQQQEVVQLKEEEKDIDKLQVEIMDALSRL
                     EQISIDRNSPDSQHMNAFSTLNDKSCLRQFR"
     gene            complement(1449..1619)
                     /locus_tag="VE223_01730"
     CDS             complement(1449..1619)
                     /locus_tag="VE223_01730"
                     /inference="COORDINATES: protein motif:HMM:NF003214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37e"
                     /protein_id="HZC20340.1"
                     /translation="MTKGTTSMGKFTRKKTHIRCRRCGHNSFHKRGKRCANCGYPNPE
                     KRKYNWIKRYVN"
     gene            complement(1651..1881)
                     /locus_tag="VE223_01735"
     CDS             complement(1651..1881)
                     /locus_tag="VE223_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LSm family protein"
                     /protein_id="HZC20341.1"
                     /translation="MSVDMAVKVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLQ
                     DSVEILEDSKSNDLGTIVVRGDNVVIISPPPV"
     gene            complement(1959..2684)
                     /locus_tag="VE223_01740"
     CDS             complement(1959..2684)
                     /locus_tag="VE223_01740"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HZC20342.1"
                     /translation="MDINKISEIGFRNFVRKTRRAIVPVGSLEQHGSHLPVSTDSLIA
                     EYIATVLVKKIPSFVVPVIPYGVSYEHKPMFNLSLRNSTLSSVLYDICISLVENGIKN
                     IILLNCHHGNVGVLQYITQNLYGKVPSNTGIYTINYWHLIRGEFDHAGEVETSLLLAI
                     APDLVSMDKAEPNSKRLSKSKVAYSSLTNNPGSFINITGNGVWGDPRYATARKGWKLI
                     NEIVKNLSLTIIELERTKTEDSN"
     gene            3053..>3438
                     /locus_tag="VE223_01745"
     CDS             3053..>3438
                     /locus_tag="VE223_01745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20343.1"
                     /translation="MKLEKNNNIAIFDTFKTHKNRFTGEAKRQRGIIMHLATEQSPEL
                     RTRTSIAHAIAKKHNIVWQNIYSGIFRDLDEVLIPSGIVKVEGRLPLRRGPRALQLEG
                     VPFYELTEAGLLVASSIEELGNNRTK"
BASE COUNT          994 a          679 c          596 g         1169 t
ORIGIN      
        1 tgaaaacagt atcgagaatt atattgccat tttcagtaat aaaagggtaa cccttttcga
       61 tcgttcttaa cttgggcgtg cctcctgcct cttccaactt gatccaaaca atggagcggg
      121 cgaacgggtg aacttctatt ggaaccgggt gggtaaatac atcaacaaat ttatttgaat
      181 cggcaacaat aactactctt ttagcagcag atgttattat tttttcctta agtaacgcac
      241 ctccacctcc tttaatcatg ttaaatttgg aatcaatttg gtctgcacca tcaaagacaa
      301 tgtcaatata tggaatatgg ttttcatcga ctatttttag tccactgttt tcagcttctt
      361 tttttatctg aagagaagta acaacgaatt ctaatctttt tttatttggt aattttgcta
      421 tttctctgac aatagccgct accgtgcttc cgctgcccaa accaatcacc tgattgttat
      481 ctgttgggaa cttctggtta actgcgtgta ttgtgagatt ttttatggct tcttgcaata
      541 aaggcgaagg gaataatggc ataatctaat ggaaggtaaa gaaccattaa tctttatcta
      601 aattgacgta agcagctttt gtcatttaga gtggaaaaag cattcatgtg ttgagaatca
      661 ggtgaattcc tatctatgct aatttgctct aaacgagaca gtgcatccat gatctccact
      721 tgcaatttat ctatgtcttt ttcttcctct ttgagttgta ctacttcttg ttgttgtttt
      781 gttttaggtc tttctgatgt aagtagataa tttgttgctg cgtcttctcc tttgtctttt
      841 gattttctac tttcatcttc tacatttgat tgtggttgct gcatcttttt tattgttttg
      901 gaaatatcag tatatgacat tccagatttc ttgcatactt cagccaactt ctggtccatt
      961 gagccaatcc tttcatttag tatagatata gtgttctctc ggatctcact gatctcggca
     1021 aaatctacta ccggtcctag tctgcgaatt ttctcctcat aggaagcgag ttgatgcttg
     1081 tactttagca aaagtctttc caattcgttc ttgtcgatct ttccttcttg gaaggcttcg
     1141 taaactctgg taaccgcttg cgatatcaag cttttttcga attgaagagc ttggagttca
     1201 gatttggcgg ccttaaatgg ctttataaga tgttcctgac cgcttataga agtttttctg
     1261 aataatcttg ggaatatggc agtaccagta atcgctccta gtagcgtgaa gaaaacaata
     1321 acaagtattt ctcctatcag cacctgtgtg cacctttttt ataattgtgt aatataatca
     1381 caccatcctc accaaacgcc ttagctggtc gtattgccat tgatttttta tacagtgctt
     1441 gtcaataact agtttacgta acgttttatc caattatatt ttcttttttc tggattcgga
     1501 tagccacaat ttgcacatct ttttccgcgc ttatgaaaag aattatgtcc gcatcttctg
     1561 catctaatat gggttttttt cctcgtaaat ttacccatcg aagtggtgcc ttttgtcatt
     1621 gtttctcaca ctttacctac ttgatctgat ctacactggt ggaggagata taataacgac
     1681 attgtcgcct cgaacaacaa tagtgcctaa atcattcgat ttactatctt ctaaaatttc
     1741 caccgaatct tgaagtaaaa gattcatgtg ttgatcgaaa ccgtgtaaat tacctctaat
     1801 gacctttcct cccttcaatt taataagcac aactttaccg aggctctcgt caagaacctt
     1861 tactgccata tctactgaca atgttatatt acctctacaa gtaagcatta cataggtata
     1921 tattaaaatt tcactagagg atacgtatgc ttagataatc aatttgaatc ttcggtttta
     1981 gtcctttcca attcaatgat agttagcgaa agatttttaa caatttcgtt aatgagtttc
     2041 caacctttcc gtgcagtcgc atacctcgga tctccccaaa ctccgttgcc agtaatgttt
     2101 atgaacgaac cgggattatt agtaagactt gaatacgcta cttttgattt ggacagtctt
     2161 ttagaattcg gttctgcctt gtccatactt actaggtccg gagctatagc aaggagaaga
     2221 gaagtctcaa cctcgcctgc gtgatcaaat tcaccccgga ttaaatgcca atagtttatc
     2281 gtatatattc cagtattgct aggaactttt ccatacaaat tctgcgtaat atattgtaat
     2341 acacctacgt taccatgatg acaattcagt aatattatat tctttatccc attttcaaca
     2401 agtgaaatgc atatgtcata gagcacacta gataatgtag aatttcgtag agaaagatta
     2461 aacattggct tgtgctcata cgatactcca tacggaatta ccggtacaac aaaagatgga
     2521 attttcttca ctaacacggt ggcgatgtat tccgcaatta aagaatccgt agaaactgga
     2581 agatgtgatc cgtgctgctc cagcgaacct accggaacta ttgctcgacg agtcttcctg
     2641 acaaagttcc gaaaaccaat ctcgcttatt ttattaatat ccatcagtat taaaaactaa
     2701 gcaagcttgc aggcttatca acgttaacct tcattgaggt ttcccgtatg tatatatgtg
     2761 acattcaggc aacagaatat ctatctcttg gatctgatcc tatctcgtaa acccttgtaa
     2821 attagatgtt caaccattcg atccaaaaaa tttattatta tactagatga ccatttaatt
     2881 tattcggata aaacaatccg attgttaagt cgcatgaaag catgttttca ctttacttat
     2941 acactagtta ttttacattc cacagtactt ctgggtttat aagaattacc aacaaactaa
     3001 aatataatta taggaatgat cttttgatta tatataggat actggaattc atttgaaact
     3061 tgaaaagaac aataacattg caatttttga cacctttaag acacacaaaa acaggtttac
     3121 aggagaggcc aagagacaac gcggaatcat aatgcacctt gctactgaac aaagtcctga
     3181 attacgtact agaacttcga ttgcgcacgc aatagcaaag aagcataaca tagtatggca
     3241 gaatatttat tcaggaatct tcagagatct agacgaagtc ttaatcccgt caggtatagt
     3301 aaaagtagaa ggaagattgc cattaagacg cggccctagg gctcttcagt tagagggtgt
     3361 tccgttctat gaactgacgg aggctgggtt gcttgttgct tcgtctatag aagaactggg
     3421 caataaccga acgaaaat
//
LOCUS       DASQSJ010000084        13148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_90312, whole genome shotgun sequence.
ACCESSION   DASQSJ010000084 DASQSJ010000000
VERSION     DASQSJ010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 13148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13148
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90312"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..561)
                     /locus_tag="VE223_01750"
     CDS             complement(<1..561)
                     /locus_tag="VE223_01750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20344.1"
                     /translation="MGQAKLKKATIILPRMETQKAVSKLAELEWFHPIQSTGSEHTNP
                     YLDDLLLKAQRLFQDVDEVVRALGIPLETGIMATMFKGAPQGKTDYVIDDIQGFVADL
                     EDKSKTLLYEPKKLLMEQNKVSKQIEEYSTIEAALKMAANLNLDVTSLRQLKRFFADI
                     FIIDSKDEEEIRKSLGDLPLYINKLNE"
     gene            complement(745..1047)
                     /locus_tag="VE223_01755"
     CDS             complement(745..1047)
                     /locus_tag="VE223_01755"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C"
                     /protein_id="HZC20345.1"
                     /translation="MTILIAVTFTGLISMNSAAYAQAPSTSSSDAGSSKLIGAGLAFG
                     LAGAGAGIGLGFVGAAGLAAISDNPKMQSRVFIFVGMVESIAIYGIVMMFIILGQK"
     gene            complement(1242..1373)
                     /locus_tag="VE223_01760"
     CDS             complement(1242..1373)
                     /locus_tag="VE223_01760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20346.1"
                     /translation="MTDDIIASHFEKARARLKTEHDSLVQKIKEEIQQSKKKTLSKI"
     gene            complement(1370..2041)
                     /locus_tag="VE223_01765"
     CDS             complement(1370..2041)
                     /locus_tag="VE223_01765"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016471 - vacuolar proton-transporting
                     V-type ATPase complex [Evidence IEA];
                     GO_function: GO:0008553 - P-type proton-exporting
                     transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HZC20347.1"
                     /translation="MSFGTRVSATKIELIKIRRSMQVAKMVHKILDDKREVLLKKIDE
                     MIEEANKARGDIWSPLGEIYTAVYDAYMSLGTATLESVSDSTPSIMEVDVNVRRIVDV
                     KIPTLQVRTKEGGQDLSYGFVETNASVDKASKLIKNMLPKVCKAAEYENAIFSLAKEL
                     ERTQKLINALEFVIIPQYEGAVAFIRATLEEREREEFVRLKKVKVVLEKRKVAEQQGS
                     AIEKI"
     gene            complement(2048..3442)
                     /locus_tag="VE223_01770"
     CDS             complement(2048..3442)
                     /locus_tag="VE223_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HZC20348.1"
                     /translation="MSETTTAGVEYSRVAEIKGPLMIIEGVTKVSFDELVEVETSAGE
                     RRLGRVVEVGYGKAVVQIFEGTTGLAISGTRAKFLGKTMTMPVSQELLGRVFDGLGRP
                     NDGLPDPVADRFIDVNGEPMNPERREYPTSFIQTGVSVIDGMLTLVRGQKLPIFSGSG
                     MPHNILAAQIARQASVVGTKEDFAVVFAAIGVQYSEAQYFKRSLEESGALRRSVLFLN
                     LADDPAIERIITPRVALTVAEYLAFDLGMHVLAILTDMTNYAEALREISAAREEVPGR
                     KGYPGYLYTDLANNYERAGRIKGKNGSVTQVPILSMPADDITHPIPDLTGYITEGQIV
                     LGRDLFRKGIYPPVNVLMSLSRLMKDGVGEGKTRADHMEVGNQLYDAYSRTQEVRALS
                     EIVGKAGLTGIDLKYLDSGDIFESQFLKQSNDENRSLEETMSRAWDVLSTLPEGELTK
                     IKEKNVRQYYKGNK"
     gene            complement(3435..5222)
                     /locus_tag="VE223_01775"
     CDS             complement(3435..5222)
                     /locus_tag="VE223_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HZC20349.1"
                     /translation="MVSKGRIIWVSGPAVRADGMSSTKMYETVEVGESKLIGEVLRLT
                     GDTAFIQVYESTSGLKPGEPVIGSGQPLSVLLDPGIIGKIYDGIQRPLEEIAQKSGSF
                     IGRGVATTPVDMKKKYRFVTSLKKGDEVSAGSILGKVEETPLLTHSILVPPDHRGGKI
                     VDISREGDYDIEHVIATVEKDGQKSELKMYHKWPVRMPRPYAERYDPSVPLVTGQRII
                     DTYFPIAKGGTGAIPGGFGTGKTVTLHQIAKWADSKVVVYIGCGERGNEMTEVLVEFP
                     HLIDPRSGRPLMERTVLVANTSNMPVAAREASIYTGVTIAEYYRDMGFDVVLVADSTS
                     RWAEALREMSGRLEEMPAEEGYPSYLASRLAEFYERAGRVRALGSPDRAGSVTLVGAV
                     SPSGADFTEPVTTHTIRFIKTFWALDTRLAYSRHYPSINWMQSYSGYLEDVSKWWKEN
                     VSAEWYDLRAESYNILQREDTLKEIVRLLGPEALPDEEKLVLEVARMVKIGILQQNSF
                     DKVDTYCGPEKQLKMVKLMVNFYKEAQKSLKEGASLTDIRAMPIITTLLKAKFEVPDD
                     QVAKLDLIDKQMIEQFQKVSGREEVKVVV"
     gene            complement(5226..5840)
                     /locus_tag="VE223_01780"
     CDS             complement(5226..5840)
                     /locus_tag="VE223_01780"
                     /inference="COORDINATES: protein motif:HMM:NF014093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033178 - proton-transporting two-sector
                     ATPase complex, catalytic domain [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit E family protein"
                     /protein_id="HZC20350.1"
                     /translation="MSSTSALEQTINKVLSQKEADLIGQLDSAYQQSVSNLESSRTRL
                     ESEYARIVEGAKKQAENLRRQIVGSSRLAARNKQLVLIETAVNDAFEKAKAKLASSNK
                     EEIYKDLVTKMLEDSFSVIGSDQVIVQCNSNDFDLVKKVISNVSTNNKARVTLSDKPI
                     NVIGGIRVRSSDGSTTYDNTLDSRIERFKPLIRKNIVQMMRGDK"
     gene            complement(6097..6675)
                     /locus_tag="VE223_01785"
     CDS             complement(6097..6675)
                     /locus_tag="VE223_01785"
                     /inference="COORDINATES: protein motif:HMM:NF014037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mut7-C RNAse domain-containing protein"
                     /protein_id="HZC20351.1"
                     /translation="MKEHLRAKSVGARLLVRLKPIFLADAMLGTVARKLRIFGFDTLY
                     IKDINDDDLLKIGIAQKRIILTCDKELFKRIIKVGTPGVLLEGSNDLEDIVHALSKHG
                     VYSINFDTVSSRCSSCNGVLSKENYEQIRKYVHPNVIKWHKDFFRCENCSKIYWEGSH
                     ISGIRSLARNLDIKIKEKFAGQDMTKTNSHDY"
     gene            complement(6626..7171)
                     /locus_tag="VE223_01790"
     CDS             complement(6626..7171)
                     /locus_tag="VE223_01790"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZC20352.1"
                     /translation="MTTRVLVRDIMNSPVISASPQDNIKDIAIKMKEERIGSIVIMEN
                     EKAAGIVTDWDIVSNAVVKDVKPSMVKALEIMQELHTIEGEEGVTEAARALRRHGIKR
                     LGVVYKNRLVGIISASDVIAVTPDLVDVISEKAALRRGEIGRSAGNVSGYCDECGEWS
                     DLLQFNEGTFTCEECRGEAVS"
     gene            complement(7252..9333)
                     /gene="rqcH"
                     /locus_tag="VE223_01795"
     CDS             complement(7252..9333)
                     /gene="rqcH"
                     /locus_tag="VE223_01795"
                     /inference="COORDINATES: protein motif:HMM:NF041120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome rescue protein RqcH"
                     /protein_id="HZC20353.1"
                     /translation="MKYPAVLMELSGVELRYLVNEIKNSVIKGYYVSNIAAITKESLL
                     FKLHHSTEPDIMLMLSTRGIWITRLKFKPIEENVLLGTIKNELERAKIESIEQIGSER
                     IATLKFKLIDGKSRTIVGEFFGQGNIILCDENMQILAILNPIEVRHRTLKAGLRYTPP
                     PIRGIDVFDLSVEQLWSMRSAAEKDLDVLRWIGRNISLPKKFVEEIAKRAEVAKMKAA
                     QLSDEDLNKIYAAIKRLVSDITEEGKKHNPIVITNVDGKAEDALPIITDYATKSTFKR
                     ATSYMEAVDEVLSQDILDLGRNVRTIEMANQIAVLEHDLDEQNKAKEEVISKSLVIRK
                     LANELMTLSYRGIDNLDDDLIKQLLTTSSAAIINEKGMRFLEVVDERIQIGYNNLPKV
                     ASLLFSRAKEMERGSNSIDEAKSVLLTRIDKLKNQKDIIHNKIVVKQYVSKEWYERYR
                     WFITTDGLLAVGGRDSSSNSALIRKHLTEQDIVFHAEIYGSPFFIIKNSAVVSQIENS
                     LYQVAQATVCFSRAWKDGLYSADAYWVKADQIKKGAPTGQFLPKGSFVIEGKRNYIKG
                     IEIRLAIGLMELGNNKRYVLVCGPADAIKKRSLIYSIIMPSGTDPMNIAKKIKSEFVK
                     ASADDIELAGFIKSISVDEFIRTIPYGRSKISLTERGEGKTASPSSAGGSETSKSSSS
                     AQPTMTNTLAR"
     gene            9479..9748
                     /locus_tag="VE223_01800"
     CDS             9479..9748
                     /locus_tag="VE223_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20354.1"
                     /translation="MRAILGLIAGIITGLAIAPGTDQNTAGGIIILIGIVFYIISYGV
                     AKSIAKKIPQAMRRKLVTNGIFPFIFMLLMFMIIVYTGLHQKLAG"
     gene            9785..10372
                     /gene="cbiT"
                     /locus_tag="VE223_01805"
     CDS             9785..10372
                     /gene="cbiT"
                     /locus_tag="VE223_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6Y C5,15-methyltransferase
                     (decarboxylating) subunit CbiT"
                     /protein_id="HZC20355.1"
                     /translation="MLWDYRTPGIPDELFERTEQVPITKEDVRALVISKLRLKENSSA
                     IDIGCGSGSITVELCLQTKANKIYAIDFDQKAIDLTRKNLLKFGLNAQTMLSNAQDIL
                     PHLPQVDAIIIGGSWGNIEQIIQLSIDRLRKGGRIVIDTILIETMYKAINTIYKEKLD
                     EADVTQIIISKARKVTTGTMMLARNPVIIISATKP"
     gene            10719..11453
                     /gene="cobI"
                     /locus_tag="VE223_01810"
     CDS             10719..11453
                     /gene="cobI"
                     /locus_tag="VE223_01810"
                     /EC_number="2.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030788 - precorrin-2
                     C20-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-2 C(20)-methyltransferase"
                     /protein_id="HZC20356.1"
                     /translation="MRLSCVGCGPGDPELLTIKAVDVIKNAEVVFAPTAKEDRPSIAL
                     SVVKKYLSKSAKIVSLMFPMLKDKEALKGYWKENAEQIAAAVRSGKKVVYLTVGDPSI
                     YSTWIYIHRELTKNHRYIEIDIVPGIASMFAFAAEAKISLAEGEETLAIVPACYDMDR
                     VRRTSNVCDTVVFLKDGRYFDNVIETLYDAGFAEDSMIAIAQDVAVQGETMKMSTLAN
                     LHGVKGPTEKYFSIMVAKKKKRSDRK"
     gene            11440..12219
                     /gene="cobM"
                     /locus_tag="VE223_01815"
     CDS             11440..12219
                     /gene="cobM"
                     /locus_tag="VE223_01815"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HZC20357.1"
                     /translation="MIESNTVYFVGSGPGDPELITIKAKKILEIADVVIYSGSLLNPK
                     ILEYTKEGAEFYDASLIDREKIYHILRDSTRKGKLAVRFHDGDPGLFSTIREQIDKLE
                     SDGLQCKVVPGITSLLGAAAAMNLELTLPGNTQTLIITRAELRTPVPDREKISELAKH
                     GATMAFYLSVHLIADIVEELLKGGVYTKETPAVVVYRATWDDQKIIHGTLGDITKKTK
                     ESKVIKTALIIVGDVIEPRAYEYSKVYDAGFTHGYRRAKVK"
     gene            complement(12394..12645)
                     /locus_tag="VE223_01820"
     CDS             complement(12394..12645)
                     /locus_tag="VE223_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2024 family protein"
                     /protein_id="HZC20358.1"
                     /translation="MYDTYVTKNDGKIMHFDVVVEASTPHEKAIEYGKQYLTKVGQAG
                     QKMTQEECQFCHIQEAPPMVEKDIMTNGYYIQKMEGCPQ"
BASE COUNT         3830 a         2781 c         2382 g         4155 t
ORIGIN      
        1 ttcattaagt ttatttatat acaaaggaag atcgccaaga cttttccgaa tctcctcttc
       61 gtcttttgag tcaataataa aaatatctgc aaagaacctt ttgagctgtc taagagacgt
      121 gacatctaag ttgaggtttg ctgccatctt aagagcagct tcaatagtgc tatactcttc
      181 gatctgcttt gaaaccttgt tttgttccat caaaagtttt tttggctcat acaataatgt
      241 cttactcttg tcttcaagat ccgcaacaaa gccctggatg tcatcaataa cataatctgt
      301 ctttccttga ggggcacctt tgaacatggt ggccatgatc cctgtctcaa gcggaatccc
      361 caaagccctg actacctcgt cgacatcttg gaatagcctt tgagctttta gtaaaaggtc
      421 atcaagatat ggattggtat gctcagaacc agtgctctga ataggatgga accattccaa
      481 ttctgctagc ttgcttaccg ccttctgtgt ttccattcta ggtaagatta tcgtagcttt
      541 ctttagtttg gcctgtccca tgttagcgca tcttaagagt aaatttcaat ctctttaaaa
      601 tctttccatt tcaattcact taacagttat ttataaaagt ccgagatttt taaaaaatta
      661 aaaattaaat acaaaatcag tacagtgcag ttataccact agagagtaaa aggggtttta
      721 ggaaattttt tcgattctcc tttactattt ctggcccaaa ataataaaca tcatgacgat
      781 accatagatt gcaattgatt ctaccatacc tacgaagata aatactcttg actgcatctt
      841 cggattgtca cttatagcag ctaaaccggc agctcctacg aaaccgagtc ctatacctgc
      901 accggcgccg gctaaaccaa aagccaaacc tgcaccaata agtttggatg agcctgcatc
      961 tgaactagat gttgaagggg cttgggcata agctgctgaa ttcatagaga ttaaaccggt
     1021 aaaagtaacg gcgataagaa tagtcaaaat tgaaactgta gtccattccc tcgtttccat
     1081 attaaagttt cgaatataaa tgccctattt aattataact aaatagacca gattttaaaa
     1141 tcccgttttt catgcagcag acagggtttg gaagaagtta gttagttagt tagttagttc
     1201 caatatcagt aatatcggat agttgaaaat aattagaaaa tttaaatttt agataatgtc
     1261 tttttcttgc tctgctgaat ttcttctttg atcttttgaa ccagagaatc gtgttctgtt
     1321 tttaaccttg ctcgagcctt ctcaaaatgg ctagcaatta tatcgtcagt catatctttt
     1381 caatcgcgct accttgttgt tctgcaacct ttctcttctc aaggactact ttaaccttct
     1441 taaggcgaac aaattcttct ctctcacgct cttcaagggt tgcacgtata aatgctaccg
     1501 caccctcgta ctgaggtatg atcacaaatt caagtgcatt aataagtttc tgagtgcgct
     1561 caagctcctt tgctagacta aatatggcgt tttcatattc tgcagctttg caaacttttg
     1621 gaagcatatt tttgataagt ttagatgctt tgtctactga tgcgttggtc tcgacaaatc
     1681 cataagacag atcttggccg ccctccttag tccttacttg aagagtgggg atctttacat
     1741 ccacgattct tctaacatta acatcaactt ccataatgct tggagttgaa tctgagacgg
     1801 attctaaggt tgcggtgcca agcgacatat aagcatcata aacagctgtg tatatttcgc
     1861 caagtgggga ccatatatcc cctctagcct tgttagcttc ttcgatcatt tcatcaattt
     1921 tttttaataa tacctcacgt ttgtcatcga ggatcttgtg gaccattttt gctacttgca
     1981 tagatctcct aattttgata agctcaattt ttgtagcact gactcttgtt ccaaatgaca
     2041 tgccagttta cttattccct ttgtagtact gcctcacatt cttctctttt atcttcgtca
     2101 actcgccttc aggcagcgtg gatagtacat cccacgctct gctcatagtc tcttccaagc
     2161 ttctattttc gtcattgctc tgctttaaaa attggctttc gaatatatcg cctgagtcaa
     2221 ggtattttaa atcaatgcca gtcaaacctg ccttcccgac aatctctgaa agtgccctta
     2281 cttcctgggt tcttgaataa gcatcgtata gttggtttcc aacttccata tgatcagctc
     2341 gtgtctttcc ctcacctacc ccatctttca tcaatctcga gagagacata aggacattta
     2401 caggtgggta gatgcctttt ctaaagagat cacgaccgag gacaatttgc ccttcggtaa
     2461 tgtagcctgt aagatctggg atgggatggg ttatatcgtc agccggcatt gataaaattg
     2521 gaacttgcgt tacacttcca ttcttgccct tgattctgcc agcccgttca tagttatttg
     2581 caagatctgt atacaagtaa ccgggatatc ccttcctacc cggaacttct tctcttgcag
     2641 cgctaatttc tctgagtgct tcagcataat ttgtcatatc tgttagaatt gctaacacat
     2701 gcattcccaa atcaaatgcc aaatattcag ctaccgttaa agcgactctc ggagttatga
     2761 tcctctctat agctggatca tctgcaaggt ttaggaataa gacgcttctc ctaagcgcac
     2821 cggattcctc caagctccgt ttgaaatact gtgcttcaga atattgaaca ccaatagcgg
     2881 caaacaccac tgcaaagtct tcttttgttc ctactactga tgcttggcgt gcaatctgcg
     2941 ctgcaaggat gttatgaggc attccggaac ctgaaaaaat gggaagtttc tgacctctga
     3001 ccagtgtaag catcccatct attactgaaa ccccagtctg gatgaaagac gttggatatt
     3061 cccggcgctc tggattcatt ggttctccgt tgacgtcaat aaatctatct gcgacggggt
     3121 caggaagtcc atcattaggt cttccaagcc catcaaatac tctgccaagt aattcttgcg
     3181 aaacaggcat agtcatggtt ttaccaagga actttgctct tgtgccactt attgcgagcc
     3241 cagtggtacc ttcaaagatc tgaactacag cttttccata gcctacttct actacccggc
     3301 ccaatctcct ttcaccagca gatgtttcaa cctccacaag ctcgtcaaag gacacctttg
     3361 tgacgccttc tataatcata agagggccct taatttcagc tactctactg tattccacac
     3421 ctgctgtagt agtctcagac aacgaccttt acctcctcac gtccagatac cttctgaaac
     3481 tgttcaatca tttgtttatc aatcaaatcc aatttcgcca cctgatcatc aggaacttca
     3541 aatttggctt tcagaagagt tgttataata ggcatggctc taatatctgt tagagaagca
     3601 ccctccttaa gagatttttg agcttcctta tagaagttta ccattaattt taccattttt
     3661 agttgttttt ctgggccaca ataggtatcc accttgtcaa aggagttttg ttgtagaata
     3721 ccaattttca ccattcttgc tacttccaga actaattttt cttcatccgg caatgcctca
     3781 ggacccaata gtctcactat ttcctttaaa gtatcttctc tctgaagtat gttataagac
     3841 tctgctcgca gatcgtacca ctctgcgctt acattttctt tccaccattt tgatacgtct
     3901 tcaagatatc ctgaatatga ctgcatccag ttaatcgaag ggtaatgtct tgagtaggcc
     3961 aatcgggtat caagagccca aaaggttttg ataaacctaa tcgtatgagt cgtaaccggc
     4021 tcggtaaagt ctgctccaga aggagatacc gcgcccacaa gtgttactga gcctgctcta
     4081 tccggggagc ctaatgctcg gacccgacct gctctttcat agaattcagc caatcttgaa
     4141 gcaagatagg atggatatcc ttcctctgca ggcatttctt caagacgacc agacatttcc
     4201 cttagcgcct ctgcccatct gcttgtagaa tccgcgacca gcacgacgtc aaatcccatg
     4261 tctctatagt attctgctat tgtaactccc gtgtaaattg acgcctccct cgctgctact
     4321 ggcatattac ttgtgtttgc aacaagtacg gtcctctcca taagaggacg tccagaccgg
     4381 ggatctatta ggtgaggaaa ttctacaagt acttctgtca tctcattgcc tcgttcgcca
     4441 catcctatgt atactactac tttagagtct gcccattttg ctatctgatg caatgtaaca
     4501 gtctttccgg ttccaaaccc tccaggaatt gcaccggttc caccctttgc gataggaaag
     4561 taagtatcaa taatgcgttg tcccgtaact aatggaacag acggatcgta tctttcagca
     4621 tatgggcgcg gcatcctgac tggccactta tgatacatct tcaactcact tttttggcca
     4681 tctttttcaa cggtggcaat cacatgctct atgtcataat caccttccct tgaaatatct
     4741 acgattttac ctccgcgatg gtcaggtgga accaaaatac tgtgagttag cagaggagtt
     4801 tcttcaactt taccaagtat agatcctgca ctaacctcgt ctcctttttt caagctggtc
     4861 acaaatctat attttttctt catatctaca ggagttgtgg ccacacctct tccgatgaac
     4921 gatcccgatt tctgagcaat ttcttctagt gggcgttgaa ttccgtcata aatcttgcca
     4981 attataccag gatctagcaa aactgaaagt ggctgaccag aaccaatcac tggttcaccg
     5041 ggctttaggc cagatgtaga ttcgtaaact tggataaaag cagtatctcc tgttaatctg
     5101 agaacttcgc caattaattt tgactctcct acttcgacgg tctcgtacat ttttgtagaa
     5161 gacataccat cggccctcac agctggaccg ctgacccata tgattcttcc tttggatacc
     5221 atagtttatt tatcgcctct catcatttgc acaatattct tccttattaa aggtttgaac
     5281 cgttcaatac gcgaatccaa agtattatca tacgttgttg atccatcaga ggatcttaca
     5341 cgaattcctc caatgacgtt tataggctta tccgaaagtg tcactctggc tttattattt
     5401 gtagatacat tagaaatcac cttctttacc aaatcaaaat cattactgtt gcactgaacg
     5461 atgacctggt ctgatcctat cactgaaaag ctatcttcaa gcatttttgt aacaagatct
     5521 ttgtaaattt cttctttatt tgaagatgcc aattttgctt tggccttttc aaaggcatca
     5581 tttacagcag tttcaataag aacaagttgc ttgtttctcg cagccaatcg acttgatcca
     5641 acgatttgcc tgcgaaggtt ttctgcctgc ttcttggctc cttccacaat tcttgcatat
     5701 tcagactcca atcttgtcct agatgattca agattagata ccgactgttg gtaagcagaa
     5761 tctagttgtc ctatcaaatc cgcttctttc tgggagagaa ctttgtttat agtttgctct
     5821 agcgcagaag ttgaactcat tatagagtct ggtcgccgac ttacgtgatt ttaacctttt
     5881 gttagcagag acacagaaca acaacattgt aaattgacat aaaaggtttg tttgctcaaa
     5941 gtcgatgcta tcgacattgt aggaatagcc gcctgctact tgatttttga aaatacgttt
     6001 ctcccaagtt agtgatatcg ttgatgtcat tttcaaatcc aattaccttt tgacggctga
     6061 aattcttctt aatttaaata accaaaaaat tcaagatcaa taatcatggc tattagtttt
     6121 ggtcatatct tgacctgcaa atttttcttt gattttgata tctaaattcc tcgctaagga
     6181 tcgaatgcct gaaatgtgac tgccttccca gtaaattttt gagcaatttt cacagcggaa
     6241 aaagtcttta tgccatttta tgacatttgg atgtacatat tttcttatct gttcatagtt
     6301 ttcttttgat agtaccccgt tacatgaaga acatcttgaa ctcacagtat caaaatttat
     6361 tgaataaacc ccatgtttag ataatgcatg aactatatct tctaaatcat tagacccttc
     6421 aagtaaaaca ccgggagtcc ctacttttat gatcctttta aatagttcct tatcgcaagt
     6481 tagaataatt cttttttgtg cgatcccaat ttttagcaga tcgtcatcgt tgatgtcctt
     6541 aatgtataat gtgtcaaaac caaaaatacg cagcttgcga gccacagtcc caagcatggc
     6601 atctgctaaa aaaatcggct ttaatctaac taacagcctc gcccctacac tcttcgcacg
     6661 taaatgttcc ttcattgaac tgcaaaagat cggaccattc accacattca tcgcaatacc
     6721 ctgaaacgtt gccagcagat cgtcctatct ctcctctcct aagtgctgcc ttttcggaaa
     6781 tcacatcaac tagatcggga gtaactgcga taacatcaga cgcagaaatg attccaacca
     6841 atctgttttt ataaactaca ccgagacgtt taatgccgtg ccgtcgcagg gctcgagcag
     6901 cctccgtaac tccttcttcc ccctctatag tatgtaattc ttgcatgatt tctaaagctt
     6961 taaccatact tggtttgaca tccttcacaa cagcattcga aactatatcc caatcagtga
     7021 caattccagc cgccttttca ttttccataa ttacaatact cccgatcctt tcctctttca
     7081 tctttatagc aatatctttg atattgtcct gaggtgaagc agagataaca gggctattca
     7141 tgatatctct aacgaggacc ctagttgtca tgttagcatc tcggtgttgt ccgaccgact
     7201 ttttgaccac gatcttagat caaaaatatg cccttaatta ctttgttcat cttacctagc
     7261 taaagtgttt gtcatcgtcg gctgcgcgga tgacgaggat tttgatgttt cggatcctcc
     7321 tgcagatgat ggcgatgctg tttttccctc tcctctttca gttaaagaga ttttagaccg
     7381 accataagga atagttctga taaattcatc aacactgatt gatttgataa aacctgctaa
     7441 ctcgatatca tctgcagacg ctttgacaaa ttcacttttg attttttttg caatattcat
     7501 cggatcagta ccgctaggca tgataatcga atatatcagg gatcttttct tgattgcatc
     7561 agccggtcca cagacaagaa cgtacctttt gttgttgcct aattccataa gcccgattgc
     7621 taaccttatt tcaatacctt ttatgtaatt gcgcttgcct tcaataacga atgagccttt
     7681 tggtaaaaat tgtcctgttg gcgcaccttt ctttatttga tctgccttaa cccaatatgc
     7741 atctgcactg tataatccat ctttccaagc tctactaaaa cacacagttg cctgcgctac
     7801 ctggtacaag ctattttcta tttggctaac tacagctgaa tttttgataa taaagaaagg
     7861 ggaaccataa atctctgcat gaaatacaat atcctgttca gttaaatgct tccgaatcag
     7921 agcagagtta gatgaagaat ccctccctcc tactgctaac aatccgtcag ttgttatgaa
     7981 ccatcgataa cgttcatacc actctttact gacatattgt ttgacaacga tcttattgtg
     8041 aataatatcc ttttgatttt taagtttatc aatccgagta aggagcactg atttggcttc
     8101 atctatcgag ttactacctc tttccatttc tttagccctc gaaaatagta aagatgctac
     8161 cttgggcaaa ttgttgtagc cgatctgaat gcgttcgtct actacttcca agaatctcat
     8221 ccctttttca ttgatgatag ctgcagagct tgtggtaagc agttgtttaa ttagatcatc
     8281 atcaaggtta tctatacctc tatacgatag tgtcattagc tcattagcaa gctttcttat
     8341 cacaagggat tttgaaataa cttcttcctt agctttgttt tgctcatcta agtcatgctc
     8401 tagaactgct atctgatttg ccatttcaat tgttcttaca ttacgaccaa ggtccaaaat
     8461 atcctggcta agaacttcgt ctactgcctc catatatgat gttgctcttt taaatgttga
     8521 tttggtggca taatctgtaa tgatcggaag ggcatcttcc gcctttccat ctacattcgt
     8581 gatgactata gggttatgct tttttccctc ttcagttata tctgaaacta acctctttat
     8641 tgcagcatat attttattta ggtcctcatc agaaagttgt gctgctttca tttttgctac
     8701 ctcagctctt ttggctattt cttctacaaa ttttttaggc aacgaaatat ttcttccaat
     8761 ccaccttaaa acgtcgagat ccttttctgc tgcacttctc atagaccata gttgctcaac
     8821 tgacaagtca aacacatcaa ttccccggat aggcggagga gtatagcgaa gacctgcttt
     8881 caatgttcta tgcctgactt caatcggatt aagaatagca aggatctgca tattctcgtc
     8941 acataatatt atattaccct ggccgaagaa ttctccgaca attgtccttg atttaccatc
     9001 tatgagctta aactttaggg tcgcaattcg ttcactacca atctgctcga tagattcgat
     9061 cttggctctc tcaagctcat ttttaatagt acccagaagc acattctctt caattggttt
     9121 gaacttgagc cttgttatcc agatccctct tgtcgaaagc attagcatta tatcaggctc
     9181 agttgaatga tgtagcttga agaggagaga ctcttttgta attgcggcga tattactcac
     9241 ataataccct ttaattaccg aatttttaat ctcattaact aaataacgta attcaacacc
     9301 agacaactcc ataagcacag ctggatattt cacaaatatt aaccaagagg caaggtaaag
     9361 atctccacta ctttcaagcg gagttttgtt acaaaggacg ataagaccgc aaggaattaa
     9421 accaagtgtt atttaatgag agaagtaatc gttggagccc ttagatcgag ttttttatat
     9481 gagagcaatt ctgggattaa ttgctggcat aattactggt cttgcaatag caccaggcac
     9541 tgatcagaat actgcaggcg gaataataat tctcataggt atagtgtttt atatcatatc
     9601 atacggagtt gctaagagta ttgcaaagaa aataccacag gccatgcgaa gaaagttggt
     9661 tacaaatggc atatttcctt ttattttcat gttgctaatg tttatgataa tcgtgtatac
     9721 gggattgcat caaaaacttg caggctaaag gctatatatt cttctatatc tgatcagata
     9781 ggcgttgctg tgggattaca gaactccggg cattcctgac gagttatttg aacggacaga
     9841 gcaggttcca attacaaaag aagatgtaag agcgcttgtc ataagtaaac tacgattaaa
     9901 agagaattct tctgcgatag atattggttg cggcagcggc agcataacag tcgagctttg
     9961 tttgcagaca aaagccaata agatatatgc gatagatttt gatcagaagg caattgacct
    10021 gactagaaaa aatcttctaa agtttggcct aaacgctcag acaatgctat ctaacgccca
    10081 agatatcttg ccgcaccttc ctcaggttga cgctataata attggcggca gctggggaaa
    10141 tatcgaacag attattcagc taagtatcga tagattgaga aaaggtggta gaatagtaat
    10201 tgatactatt ttaattgaga cgatgtacaa agcaataaac acgatttaca aagaaaagct
    10261 agatgaagca gatgttacac aaatcataat ctctaaagca cgaaaagtga ccacaggtac
    10321 aatgatgcta gcaaggaatc ctgtgataat aatttctgca acaaagcctt aaatggaaga
    10381 gttaagctat gcaaagaagt atatgaatgg gtggctttgt ctcaaagact gtatttatca
    10441 tttattctaa taatcttgga acaaattgtc acgagaaatc attacaagat ctttgcagcg
    10501 tgaatcgttt ttatcttcga cttgatagat aggaccacat cgcgaaatac tctattactt
    10561 gggtaggttg cgatatgcaa agctgtatcg aaaactactt catccattca gctgaggtta
    10621 attctaactg aaataccggc cctctatatg cccattagat gctcgacttg ttaaaaatat
    10681 cttttaattt aaataactca atcttacaaa atacaaaaat gaggctttca tgcgtgggat
    10741 gcggaccagg tgatcccgaa ctgcttacaa taaaggccgt agacgtgatc aaaaatgcag
    10801 aggtcgtttt tgcacccact gcaaaggaag ataggccgag catagcgctt tccgtagtga
    10861 aaaaatacct gagtaaatct gcaaaaattg tcagtcttat gtttccaatg ctaaaagaca
    10921 aagaagcatt gaagggttat tggaaagaaa acgctgaaca aattgcagct gctgtcagat
    10981 ccggaaaaaa agtagtttat ttgacggttg gagatccttc gatatatagc acatggatat
    11041 acatacacag ggaattgaca aagaatcata ggtacattga aattgatatt gtccctggca
    11101 tagcatcgat gtttgcattc gctgcagagg caaaaatcag ccttgcagaa ggggaggaaa
    11161 cgcttgcaat agttcccgct tgttacgata tggatagagt cagacgaact tcaaatgtct
    11221 gcgataccgt tgtctttctc aaggatggga gatactttga caacgtaatt gagacactct
    11281 atgatgcagg ttttgcagaa gattctatga ttgcgattgc gcaagatgta gcagtacagg
    11341 gagaaacaat gaaaatgagt actttagcta atttacacgg agtaaaagga ccgacggaaa
    11401 aatatttttc tataatggta gcaaagaaga agaaaagaag tgatagaaag taatacagtt
    11461 tactttgtag gctctggtcc cggtgatcca gagcttatta caataaaggc taaaaaaata
    11521 ttggagatag ccgatgtagt gatatattca ggttcacttc taaatcccaa gatattagaa
    11581 tacactaaag aaggagctga attttatgac gcgtctctga tagatcgaga gaaaatttat
    11641 catattttga gggattcaac taggaaaggg aaacttgccg ttagattcca cgacggagat
    11701 cccggacttt ttagcactat tagagaacaa attgacaaat tagaaagcga cggactacag
    11761 tgtaaagtag ttccaggaat aacttcatta cttggggcgg ctgcagcgat gaacttggaa
    11821 ttaactcttc caggcaatac tcaaactctg ataataacta gggcagaact taggactcct
    11881 gtacctgaca gagagaaaat atctgaatta gctaaacatg gtgctacaat ggctttctac
    11941 cttagtgtcc atttaatagc agatatagta gaagaacttt tgaaaggtgg agtatacacc
    12001 aaagaaactc ctgctgttgt tgtttaccgg gcgacatggg atgatcagaa aataattcat
    12061 gggacactag gggatataac aaaaaagaca aaagaatcga aagtgattaa aactgccttg
    12121 attatagttg gtgacgtgat agagccaaga gcttatgaat attcaaaagt ctatgatgca
    12181 gggtttactc atggatatag acgagcaaaa gtaaaataag ccggattcta ttttacttcc
    12241 acaactgttt taattggact ggcagtggta gatgcaaggt ataggaatta cgaaacaaag
    12301 gccagataaa ttaaccaaat agcataaaat atcatgttta tataatacga tataaattaa
    12361 taaaaaataa ttattaaaaa taaaataaaa taattactgg ggacaacctt ccattttctg
    12421 tatgtaatac ccgtttgtca ttatatcttt ttcaaccatt ggaggtgcct cctgaatgtg
    12481 acagaattgg cattcttcct gggtcatttt ttgtccagct tgacctacct tggttagata
    12541 ttgtttacca tattcaattg ccttttcgtg tggagtactt gcctcgacaa ccacgtcaaa
    12601 atgcataatc tttccatcgt tttttgttac atatgtgtca tacactgcgc attccatata
    12661 atattttcaa cattacctta tttattctaa tccgctagtg acgcatactg tatggtgaag
    12721 cacaaaaatc atattattca tgacaataat ctgctttggg aagaacagtt gaacagttgt
    12781 cttaaatata aaataataaa accaaagcca cagtacggtc tgatatcttc aggtgggtaa
    12841 tacaagtcgg actatcgtgc ataatgcagt gtatggagta caagtattag atcggctttg
    12901 atcattgatc agtagttaat ataacttcac gtagtacacc ttaaccatat attggggcag
    12961 ttgttgtgat cactacagtg tctccgaacg ttgttaccaa taagtgaaga aatagaagat
    13021 cacaatgtta atcaaaaaaa gtaataatga taatatctac ggagtgtgga ggcaagactt
    13081 gtttcatgaa aatgttaaat atcaagtgat taacaaatat ctagattgtt atacagcaat
    13141 agaaacaa
//
LOCUS       DASQSJ010000085         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_90374, whole genome shotgun sequence.
ACCESSION   DASQSJ010000085 DASQSJ010000000
VERSION     DASQSJ010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90374"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1533)
                     /gene="topA"
                     /locus_tag="VE223_01825"
     CDS             complement(<1..1533)
                     /gene="topA"
                     /locus_tag="VE223_01825"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HZC20359.1"
                     /translation="MSSIIERPYDLVICEKPDAALRIAQALGSLSFKKVSSEKGKSER
                     LPPIFSVTDRNNQRFVVCSAVGHLYGLVDIRGNRTIYPVFDVTWRPLKNKGTHGFKTA
                     AKTEQIIRSISALSHKATRFVHACDYDQEGEVIGYNILQYACDNKYESSLRAKFSTLT
                     DEEIRNSFDNLLRPSKGLAEAGRSRHMIDFIYGVNLSRALTQSYKISNEGKAFCNLSI
                     GRVQGPALAFVVERDIEIRNHISDPYWTISGEFEKNGHRIKAHYHKQKITTQSQANFI
                     VNECTGQYGKITSIKDEKVASKAPNPFSLGDLQSEAYRVFKFSPSYTLAIAEKLYLDA
                     LISYPRSSSQKLPSSINYKKIISHLSSFIDSTTGRAVYSILASKLLAKDHLSPNEGRK
                     TDPAHPAIYPTGEKPKRRLQGAEIKLLDLIIKRFFATFGDPAISQHTTITILVKDEHI
                     FIADAKKMIHEGWMYFYKPYSDGSALGDQTNLPLLHNDDILKSIAITMSEKFTQPPVR
                     FNE"
     gene            1436..1711
                     /locus_tag="VE223_01830"
     CDS             1436..1711
                     /locus_tag="VE223_01830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20360.1"
                     /translation="MKLKDPRAWAIRSAASGFSQITKSYGRSIMLLNLKYPSLLIIVL
                     NNNNNNKQIKAFKPGDIYLHNSSLKKCCCGIQKIRPLATGFGAKNSI"
     gene            1765..>2083
                     /locus_tag="VE223_01835"
     CDS             1765..>2083
                     /locus_tag="VE223_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20361.1"
                     /translation="MIIKLEHYFVESEEKLSHPFSELDKMKLAEAIESNYEKIRSVML
                     ELEQARNKSKPTIIELGSIGKRFFALTIYYNDITEDDIPSTIRQLLPTISPTRIDVMT
                     TLEA"
BASE COUNT          639 a          373 c          385 g          686 t
ORIGIN      
        1 ttcattaaat cgtacaggag gctgggtgaa tttctcactc attgttatgg caatgctttt
       61 taatatatca tcgttatgta gcaatggcag gttagtttgg tctcccaatg cagatccatc
      121 agaatatggt ttgtaaaaat acatccatcc ttcatggatc attttctttg catcagcaat
      181 gaaaatatgt tcatctttga ccagaattgt aattgttgta tgttgactta tagccggatc
      241 accaaatgtt gcgaagaacc gtttgataat gagatcaagt aatttgattt ctgcaccttg
      301 aagtctacgt tttggtttct cgcctgttgg gtaaattgca ggatgtgcag ggtcggtctt
      361 gcgaccttcg tttggagaaa gatgatcctt tgcaagaagc tttgatgcta ggatgctata
      421 aacagctcgg ccagtagtag aatcaataaa gctagaaaga tgagaaataa ttttcttata
      481 atttatcgat gatggaagct tttggctaga cgatctcgga taagaaatta gcgcgtcaag
      541 atatagtttc tctgctattg ctagcgtata gctaggagag aatttgaata ctctgtatgc
      601 ttcactttgt aaatcgccta aactaaaagg gttcggagct ttggatgcga ccttttcatc
      661 tttaatgctg gtgattttgc catattggcc tgtgcattca ttaactataa aattggcttg
      721 agattgagtc gttatttttt gcttgtgata gtgtgccttg attctatgtc catttttttc
      781 aaattctcct gagatagtcc agtatggatc tgagatgtgg tttcttatct caatgtctcg
      841 ttctactaca aatgcaagag caggtccctg caccctgcct atagacaggt tacaaaacgc
      901 cttgccttcg ttactgatct tataagattg tgtaagtgct ctggatagat taactccata
      961 gataaaatca atcatatgac gagatctgcc agcctcagct agtcctttgc ttggtcgtag
     1021 cagattatca aatgaatttc ttatttcttc gtctgtcagc gttgaaaatt tagctctaag
     1081 tgaggattca tatttgttat cgcaggcata ttgcaaaatg ttataaccaa ttacttcacc
     1141 ttcttgatca taatcacaag catgtacaaa ccttgtagct ttatgcgaaa gcgctgatat
     1201 tgacctgata atctgttctg ttttcgcagc cgtcttgaaa ccatgtgttc ccttgttctt
     1261 gagtggcctc caagtaacat caaatacagg atagatcgtc cggttccctc taatatccac
     1321 taatccgtac aagtgaccga ctgcggagca cacaacaaac cgttgattgt tacgatctgt
     1381 tactgaaaaa atcggtggaa gtctttcgct tttccctttc tctgatgaca cttttttgaa
     1441 acttaaagat cccagagctt gggctattcg tagcgcagca tccggttttt cacaaataac
     1501 caaatcatat ggacgttcaa taatgctgct caatttgaaa tatccttctt tgcttattat
     1561 tgtactcaat aataataata acaataaaca gataaaagca ttcaaaccag gagatattta
     1621 cttacataat tcgtcgttaa agaaatgctg ttgtggtatt caaaaaataa gacctttagc
     1681 gactggattt ggagcaaaaa attctatata aagaatataa gaaaacaaga ttttttatat
     1741 cagatgtctt aaatgttatg catcatgata ataaaacttg agcattactt tgtagaatct
     1801 gaagaaaaac taagccatcc attttcggaa ttagataaaa tgaaattagc agaagcaatt
     1861 gaatcaaact acgaaaaaat aagatcagtt atgttagagc tggaacaagc aaggaataaa
     1921 tcaaaaccaa ctatcattga attaggaagt attggaaaaa gattttttgc attaaccatt
     1981 tattacaatg atattactga agatgatata ccatctacta tcagacaatt actacctact
     2041 atttctccaa cccgtatcga tgtaatgact actttggaag cag
//
LOCUS       DASQSJ010000086         2590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_363270, whole genome shotgun sequence.
ACCESSION   DASQSJ010000086 DASQSJ010000000
VERSION     DASQSJ010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363270"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(189..434)
                     /locus_tag="VE223_01840"
     CDS             complement(189..434)
                     /locus_tag="VE223_01840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20362.1"
                     /translation="MLTVNIDTSGVDSSEAQEWANELANVYADMEIEDVNVSGNKISF
                     KAGFSGMDDTEPDDIRMKIEEYLTMNEAFQVKDLSVR"
     gene            complement(573..740)
                     /locus_tag="VE223_01845"
     CDS             complement(573..740)
                     /locus_tag="VE223_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20363.1"
                     /translation="MCNCPKVHFYEVEFKLAGMKAIPTHKNCGDSLNDDQFSKFEKEL
                     VKYWGFEEKKE"
     gene            988..2067
                     /locus_tag="VE223_01850"
     CDS             988..2067
                     /locus_tag="VE223_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20364.1"
                     /translation="MKSDVMSIRFGHALAAILITATITSIANTSGGIVKNAYGQSENW
                     YVGKGVQPNTYYTYKIQTADVDNGQPFLMTIYFKQFNSAGQYWIAPAYVVNYKGEVIT
                     GTLNLSDLDLSVLGTSKTPDNMQPYLSAYTSSIHWLASFVPKPGQSLSSAYWGKIASI
                     GGSPIAPGGSAKVTVPAGSFDTKVITYHKGVDNNIWISPNLPYPVKAQTYADVTSGNP
                     PIQYAFDLQATGQGQPPTPKSQVIIPKPPLTIQTARGTYYIQLLWDPQTISVGKPTSF
                     GVIFQDNSKNIQSGVSYSFKVTDSSGKVLRDVHDQNAQDGTGKQSDITFTKAGPAKIL
                     VSIDAVQGQPTGEFVENANFDVVVV"
     gene            2291..>2590
                     /locus_tag="VE223_01855"
     CDS             2291..>2590
                     /locus_tag="VE223_01855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20365.1"
                     /translation="MSPKRKVFLLSGIFALLGISISVIIIAIGGGFSSGTSIFHPPTT
                     ADLWVVGQPIHQGTLLNYSLTRIGSHSSPWSSLGEHSSLINSLVSINFVQDKDNNN"
BASE COUNT          827 a          492 c          461 g          810 t
ORIGIN      
        1 acataacgac cagaacctac aggtttttgt gctttatggc gtatacatat acccttacaa
       61 gtcatgcctc taatcaaaat tgcgtaatcg tttttgtatt taaagatctg taaccatcaa
      121 tcatgattca ttaggaaaga aaaatgtcta gtgataaaag aaaagaaaaa gcttctatcc
      181 ttctatgcct aacgaacaga aaggtccttg acttggaacg cttcgttcat tgtcaaatac
      241 tcttcgattt tcatccttat gtcgtctggt tctgtatcat ccattccgga gaatcctgct
      301 ttgaatgaaa ttttattccc cgagacattc acatcttcaa tttccatatc agcatataca
      361 ttcgcaagtt catttgccca ttcttgagct tcactagagt ctacgcctga cgtatcgata
      421 ttaacagtta gcattttggt catccaaact cacctacagc aaatttatcg taggtgttaa
      481 taaagttgac tgccatcagt taaaaaatgt attacaggat ttaaatcatt ccgtgttttc
      541 gcttataaat agtaaataga atacttgtca tgctattctt ttttttcttc aaaaccccaa
      601 tatttcacga gttccttttc aaattttgaa aactgatcgt cgtttaatga gtccccacaa
      661 ttcttatgcg tcggtatagc cttcatgcct gccaatttaa attcaacttc ataaaagtga
      721 accttgggac aattacacat atactaaaac aactaccttt attcctctac ttatttgttt
      781 atccaggcga gcaaatggat atgaagtacc ttgcttattt ctaactctat tttgatgctc
      841 agacttacca acaataagtt atgaaataat tagagtatta attgtatatc ttcttgctat
      901 gtgtcttgat atatggataa ttgtataata aatatagata aacatttatc aattcgaacc
      961 taaactatct ttatgatgag aagaagtatg aagtctgatg tcatgagtat aagatttggt
     1021 cacgccttag cggccatatt gattacagca accataacaa gcatcgcaaa tacttcaggt
     1081 ggcatagtaa aaaatgctta tggacaaagc gagaattggt atgttggaaa aggtgtccaa
     1141 ccaaatacat attatacata taaaatacaa actgctgatg ttgataatgg tcagcccttt
     1201 ctaatgacaa tttattttaa acagtttaat agtgctggac agtactggat tgcaccagca
     1261 tatgttgtta actacaaagg agaagtgata actggaactc ttaatttaag cgaccttgat
     1321 ttaagtgttt taggaacctc caagactcca gataatatgc aaccttatct gtctgcttat
     1381 acttcttcaa tacattggct tgcttctttt gttcccaagc ctggtcaatc attgagctct
     1441 gcatattggg gtaagattgc atcgataggt ggatcaccca ttgcccctgg tggctcagca
     1501 aaggtaacgg taccggctgg gagttttgat acgaaggtaa ttacttatca caagggagtt
     1561 gacaacaata tatggatcag ccctaatctt ccatatcctg tcaaagcaca aacttacgct
     1621 gatgtaacat caggaaatcc acctattcaa tatgcatttg atcttcaagc aacaggtcaa
     1681 gggcagcctc caacaccaaa gagtcaagtt ataattccaa aaccgccctt aaccatacaa
     1741 acagctcgcg gaacatatta catacaattg ctatgggatc cacagacaat ttcggttggt
     1801 aaacccacaa gttttggtgt gattttccag gacaattcaa aaaatataca gagtggggtc
     1861 agctatagtt tcaaggttac agattccagt ggcaaagtac tcagggatgt tcatgatcaa
     1921 aatgctcaag atggaactgg taagcaatca gatataacat ttacaaaagc tggtccagcc
     1981 aagattctag taagtattga tgcagttcag ggtcaaccga ctggagaatt cgtagagaat
     2041 gcgaactttg atgtcgtggt ggtgtaggat gaggaggaac taggggacac gcgcccggat
     2101 cagcggcacc tgcatctacg ctggaaaatc agacaaagat atctctagta attatggtag
     2161 caataatctg attagttatg acaaggacaa aatgcttcgg aaaactcttt atcgaaaata
     2221 aggaaacttc tgttcttaaa ttatttcttt actcttaaat aaccacaatt acaattagca
     2281 atcaaagtcg atgtctccta agcggaaggt ttttttatta tcaggaattt ttgctttgct
     2341 tggaatatca ataagtgtaa taattattgc aattggtgga ggattttcta gtggtacttc
     2401 aatttttcac ccaccaacta cagctgattt atgggtggtc ggtcaaccta ttcaccaggg
     2461 aacccttttg aactattctt tgacaagaat tggaagtcat agttcgcctt ggagtagctt
     2521 aggagaacat agctcgctca taaattcatt agtatccata aattttgttc aagataaaga
     2581 taacaataat
//
LOCUS       DASQSJ010000087         2393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_210247, whole genome shotgun sequence.
ACCESSION   DASQSJ010000087 DASQSJ010000000
VERSION     DASQSJ010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_210247"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            268..924
                     /locus_tag="VE223_01860"
     CDS             268..924
                     /locus_tag="VE223_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HZC20366.1"
                     /translation="MRESSAGRRLLLNCPDASFYARSTKLVARDLLGKTLVRLIYNNT
                     LGNVQRISGIIIETEAYGFKNDAASHAYGGLTSRNAAMFGQVGRAYIYFTYGSQYCVN
                     VSARSNEVDAGAVLIRALQPLEGIEIMKSFRNNDNHLSLTSGPGKLSQALSITKLLNG
                     EDMTDPESKLHIEDGFNPLAIVTTKRIGINRDLDKKWRFVIADTTKEGHLNKYASRKR
                     "
     gene            1039..1179
                     /locus_tag="VE223_01865"
     CDS             1039..1179
                     /locus_tag="VE223_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20367.1"
                     /translation="MGKLLVALDDELEKRFREAVFRRYGMKKGNLTNAISEAIDLWLK
                     SK"
     gene            1372..2265
                     /locus_tag="VE223_01870"
     CDS             1372..2265
                     /locus_tag="VE223_01870"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HZC20368.1"
                     /translation="MSLAGMRIVITGSRRATELAHLISNFGGTPRIIATVGFEVNQGV
                     SKEIEDFINKIVEKKIDYIIFMTGPGVYLLMSAARCLDLEKRLVEALNQIIIICRSLK
                     SKYALADHGIKTDIIPQENTAEGIARALNNYSVYNKSVAILWPGSDSSVLREELLKSG
                     AQVVECSIYTYSHELKEEATKVLKTMGFNYKSPHQAKVVEFIEEITKGFIDAITFTSP
                     PAVFEFFKIAEQYHLKEPLQQSLNQDIIVVAVGPSTEKALAENRVKVDVMPKVYKMGP
                     MVKALSGYVIQTKANRAKIQS"
BASE COUNT          853 a          420 c          477 g          643 t
ORIGIN      
        1 atgactttcc ttctatagat cacttatcag actatttgca acgtcaccgc atatattgtc
       61 agcagatcaa ttttccctct attcacagat atcgaacttc gtatttttac tccattatag
      121 aacttatgtt ccatctcatc caatatgaac aacatccaaa ggtattcctg tacttctacg
      181 agaagaacag caaattaaat gcaggctgga atatagatcg atatttatgg aataggaaac
      241 aaggtaaaaa ctacggggac gatagtgatg cgagagagca gtgcaggaag aaggttattg
      301 ttgaactgtc cagatgcttc tttttatgct cgatctacta aactggtcgc cagagatctg
      361 cttggaaaaa ctctagttcg tctaatttat aataatacgt taggcaacgt tcagcgtata
      421 tctggtataa tcattgaaac agaggcgtat ggatttaaga atgatgcagc aagccatgca
      481 tatggtggtt taacctctag aaacgcagcg atgtttggac aagttgggcg agcatatatt
      541 tactttacat atggaagtca gtactgtgta aacgtctctg cgcgatccaa tgaagtggat
      601 gcaggagcag ttctaataag agcattgcaa cctttagaag gtattgagat aatgaaaagt
      661 tttcgtaaca atgataacca tctatctttg acgtcgggtc ctggcaaact tagccaagca
      721 ttaagtatta ccaaattact caatggagaa gatatgaccg atccagagag caaattgcat
      781 atagaagatg gattcaatcc attggcaata gtcacaacca aaaggatagg aataaaccga
      841 gatctagata aaaaatggag atttgtaata gcagacacta cgaaggaagg acacctaaat
      901 aaatatgcat ctagaaaaag gtaagctcaa agtaattcgt aggctcattc ataagtccct
      961 atcatacaaa atgaaagcat ttatagcaag cattaatata tatctatata tctgtcaaaa
     1021 tagatattat cgatcggtat gggtaaactc ctagtagcgt tagatgacga gttggagaaa
     1081 aggttcagag aggccgtatt cagacgctat ggtatgaaaa aaggcaatct tacaaatgca
     1141 atatccgaag ccatagatct ctggttgaaa tccaaataga ttatggcata agggattgcc
     1201 gatcaaagat tgttttttct tatgccttgc ataagacata cagaacagat atgataacac
     1261 ttcttacaac aacaacaaca acaacaacaa caacaacaac aacaacaaca accacatcag
     1321 atcacgcgaa ggtacttatc tagccagagt cctgaaagga gttgcggtat attgtcgtta
     1381 gccgggatga gaatagtcat aactggaagt cgtagagcca cagagttggc gcatctaata
     1441 tcaaattttg gaggcacccc caggataata gctactgtag gattcgaggt aaatcaaggt
     1501 gtatcaaaag aaattgagga ttttataaat aaaatagttg aaaaaaagat agactatatt
     1561 atttttatga ctggaccggg agtatattta ctcatgtctg cagctaggtg cctagacttg
     1621 gagaagagat tagttgaagc actaaatcaa ataattataa tatgcaggag cctcaagtcc
     1681 aaatatgcat tggctgatca cggtattaag acagacatca ttccccaaga gaatacagca
     1741 gagggaattg ctagagcact gaacaactac agtgtttata acaaaagcgt ggctattcta
     1801 tggcctggtt cagattcatc agtattgaga gaggagcttc ttaaatctgg agctcaagtc
     1861 gtcgagtgtt caatatacac atattcccac gagcttaaag aggaggcaac caaggttcta
     1921 aagacaatgg gttttaacta taaatcccca catcaagcaa aggttgtaga atttattgaa
     1981 gaaattacca aaggattcat tgatgcaata acatttacta gccctcctgc agtattcgaa
     2041 ttctttaaga ttgcagaaca atatcatcta aaggaaccac tgcaacaatc attaaatcaa
     2101 gacataatcg tcgttgcggt aggaccttct acagagaaag cattggcaga aaacagggtc
     2161 aaagtagatg ttatgcctaa agtctacaag atgggaccaa tggtaaaggc cttaagcggt
     2221 tacgttattc aaaccaaagc aaacagagca aaaatacaaa gttgaagtca aatttcccaa
     2281 tttatgtctt cgttcaacat tagctaacag cagtagcgat attggatggg tatattatat
     2341 gaattagaaa acatttcaaa ttaaggagcc ttttttatac ttaatgtata ttc
//
LOCUS       DASQSJ010000088         3157 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_329513, whole genome shotgun sequence.
ACCESSION   DASQSJ010000088 DASQSJ010000000
VERSION     DASQSJ010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3157
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329513"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            259..1170
                     /locus_tag="VE223_01875"
     CDS             259..1170
                     /locus_tag="VE223_01875"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HZC20369.1"
                     /translation="MNKRTNLFLPSLFFIIASLLWSTTNTSFKTLPIAYAQTNAAALA
                     STTPIVTNNNSGATSSNAASNTTNGGLQIKKDVKYFDSASGYLVYPSTVNTTGKKVPA
                     IIMVHEWWGINDNIRTMANTLAKQAGYVVLAADLFKGQSTKDPKQAMQLVKIITDNPQ
                     QSISNLQAAVKYVSSLPFVDNSKVASIGWCVGGGQSLQLALHSEQHPLAATILYYGTP
                     LVTDKQELSKIKWPVLGIFGDHDQANPLPLINSFKAALDADGITNQIQIYKGLGHAFA
                     NPSGANYAPKQTADAWEKTLAFLKKYV"
     gene            complement(1271..1534)
                     /locus_tag="VE223_01880"
     CDS             complement(1271..1534)
                     /locus_tag="VE223_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20370.1"
                     /translation="MEKLSKRTLRKHIQDSKEEFCNDDNAFIKASLLRPTKYDHILSV
                     IKECLALEATNYGMPPIAEYRVVGDSPDIVYVEKILFSFALDG"
     gene            complement(1859..2419)
                     /locus_tag="VE223_01885"
     CDS             complement(1859..2419)
                     /locus_tag="VE223_01885"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HZC20371.1"
                     /translation="MMHDKNMMIALAGLNLALSYENAGVDRLEKRLSESIDPEVKERL
                     DRHLAQTKEQQARLRETIKSLGGEPITEMGRLPIPEPPQSLKAMIESGSTPNETEVWE
                     SLNDLIIEKAETIMYKGGIQALELLKADKKAIKNLEKNLKEEEAFANWLEKNNPRIAK
                     RLMTKQMEEKKKKQKREESVTASTTG"
     gene            complement(2684..3109)
                     /locus_tag="VE223_01890"
     CDS             complement(2684..3109)
                     /locus_tag="VE223_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20372.1"
                     /translation="MSESTIKSFPHWEILYKNQRVETMPWYNENLDSDLQEELDKGKI
                     SIDDGKKFLDVGTGPATQDIMLSKRGFTVVGSKQNGMLFLKCFSDKEPRQEGPYKFSQ
                     DKIRDLFGKSFKIHSIEETVYQGTLDPLPKALFVVMTDK"
BASE COUNT          898 a          634 c          534 g         1091 t
ORIGIN      
        1 ttagtatccc tgctatagag aatcctaaga agaggttcga tctcgatata actttgccaa
       61 attcaatttc ttatagcaac tagatttgtc ttgtttgtct taataatgca gcaaaagcag
      121 aataaagaat tgtcctttca ttctacgcta aataatcaat aataacacct tcatttaaag
      181 ttcagcgtat gataagcacc attgatgtgc ctattattat agtaaaatat aatattttgc
      241 tataatactc ttactataat gaataaaaga actaacctat tccttccttc cctattcttt
      301 attatagcct ctttgttatg gtcaacaaca aatacaagct tcaaaacact acccatcgct
      361 tatgctcaaa caaatgctgc tgcgcttgcc agtactactc cgatagttac taataataat
      421 agtggagcca ccagtagtaa tgctgcttca aatactacta atggcggatt gcaaattaag
      481 aaagatgtca agtactttga tagtgcttct ggatatttgg tatatccttc aacagttaat
      541 accactggca agaaagttcc agcaataata atggttcatg aatggtgggg tataaatgat
      601 aacataagaa ctatggcaaa tacccttgct aaacaagctg gctatgttgt tctagcagcg
      661 gatttattca aaggacaatc aaccaaagat ccaaaacaag ctatgcagtt agtaaaaatc
      721 ataacagata atccacaaca atccatttca aacctacagg cagctgtaaa gtacgtaagt
      781 tcgcttccat ttgtggataa ctctaaagta gcttctattg gttggtgtgt gggtggggga
      841 caatcgctgc aacttgcttt gcatagtgag caacacccac ttgctgctac catattgtac
      901 tatggaactc ctttggttac agacaaacaa gagctctcaa agataaagtg gcctgtttta
      961 ggaatatttg gagaccatga ccaggctaat cctttaccac tcataaattc atttaaagca
     1021 gcgttggatg ctgacggaat tacaaaccaa attcaaatat acaaggggtt aggacatgct
     1081 tttgcaaatc cttctggcgc taactacgct ccgaaacaaa ctgcagatgc atgggagaag
     1141 acattggcat ttcttaagaa atatgtttga tctaaagctc ctcctcgttt ttctttgatt
     1201 ttggggctac ttttcaatac tctttgtttt tcttaataaa accctgcatt ggtaagtcac
     1261 agtataagtt tcagccgtct aacgcaaaac tgaagagtat tttctctaca tatacaatat
     1321 cagggctatc cccaactaca cgatattcgg ctattggtgg catgccatag tttgttgctt
     1381 ctagcgccag gcactccttt atcactgaga gaatatggtc gtatttcgtt ggtcttagta
     1441 gcgatgcttt gataaaagca ttatcatcat tacaaaactc ttctttacta tcttggatat
     1501 gttttcgaag cgttcttttg ctaagctttt ccattttatt ttctgtcttt agttgattga
     1561 aaaaagtttt cttcagtttt tgtgaaccat tagcttgtca aaaattatac caaccatcat
     1621 cataggacaa gacttgctca gaactaataa tatgatatgt taaaacgcta tgagatgact
     1681 ttcaatatgg aaatccaagt ggatatctac caaaacatac tgttctatag gtccaattcg
     1741 agtttctgac ttccatcctt gtttatatga aatcgaaata gaccgcactg tatgagagag
     1801 gatattctgg actaaaaatg atgttattgt taatgatccc taattagatc gtcaaatctt
     1861 atcctgttgt ggaagcagtg acggattctt ccctcttttg ctttttcttc ttctcttcca
     1921 tctgctttgt cattaatcgt tttgctattc ttggattgtt cttttctagc cagtttgcga
     1981 acgcctcttc ttcttttaga ttcttttcta aattcttaat ggctttcttg tccgccttca
     2041 ataattccag agcttgaatg ccacctttat acatgattgt ttctgctttt tctattatta
     2101 gatcgtttag cgattcccaa acctcagttt cattgggagt actgccactt tctatcatgg
     2161 ctttcagaga ttgtgggggc tctggtatag gcaatctacc catctccgtt attggttctc
     2221 cacccaagga ttttattgtc tcccttagcc gggcctgttg ttcttttgtc tgggctagat
     2281 gccgatcaag cctttccttg acttctggat caatgctctc agacaacctt ttctcaagtc
     2341 tatctactcc tgcattttcg tatgataatg cgagatttag tcccgccagg gcaatcatca
     2401 tattcttatc gtgcatcatg tatgtcctta tacgtactat taacaaatat aatagcgtat
     2461 ttgtttagtt atttagagaa aaggattaac atgagactac ttttcaagaa taattataaa
     2521 gtagacccag gtctttgatt gattgaataa atcctgctcc tttgcattat ctatgaacgg
     2581 gcttgctgta ttctttatac tatggaaccc atgctaggat gtcattgtaa tctccagccg
     2641 cgcagacccg ctccaacgat ataattatat gactagtgtg ctattattta tctgtcataa
     2701 caacaaataa tgcctttgga agcggatcta aggttccctg ataaactgtt tcctctatgc
     2761 tatgtatttt aaaggatttt ccaaataaat ctcttatctt gtcttgcgaa aatttgtatg
     2821 gaccttcctg cctgggctct ttgtcactaa agcattttaa gaacaacatg ccgttttgtt
     2881 ttgaacctac gacagtaaag cctcttttgg aaagcattat atcttgagtt gctggacctg
     2941 ttccgacgtc aaggaatttt ttgccatcat caatgctaat ctttcctttg tccaactcct
     3001 cttgtaaatc tgaatcaagg ttttcgttat accatggcat tgtctctacc ctttgatttt
     3061 tgtataagat ttcccaatga ggaaaggact ttatagtaga ttctgacata aatgatctaa
     3121 cttacgtctg aaacctatag tagttaagtt ctcttct
//
LOCUS       DASQSJ010000089         6145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_329567, whole genome shotgun sequence.
ACCESSION   DASQSJ010000089 DASQSJ010000000
VERSION     DASQSJ010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329567"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VE223_01895"
     CDS             <1..192
                     /locus_tag="VE223_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20373.1"
                     /translation="WAFLHVAMGVAIHVAFVLLPLGFFYRSIYNKYSINHAYALHLAT
                     NLALIGISFSSYFLLQSGS"
     gene            495..1478
                     /locus_tag="VE223_01900"
     CDS             495..1478
                     /locus_tag="VE223_01900"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HZC20374.1"
                     /translation="MNSITAMEKEIRYQIDDLSKLDLPSKANLDNCLIVGAGDSYVAA
                     LITEYVSNYRTICCNPMEIVFNPEIIKNHRLYIISVSGNTKSNILAAKISKKKNIPTT
                     AITARPESKLAKSCDEIIQVRYKSTGIPTSGTISFTSNLLCCLSLLGKIKSFDHLNMI
                     YKEAYNEAENMISTTTGTSSCYIFLASGLLFPVAIYGALKINEVFGLKSFAYPFEEFC
                     HSPIFSIKSSDKIIILGDKGYNDDKELNRRLQNLGINSCYVDCARNDNSKKTQLTDRL
                     IKAIMLLQLFVLKKATLEKVKNCFFLENKELLKLSSTFIYHNDKQTKRKTH"
     gene            2146..3282
                     /locus_tag="VE223_01905"
     CDS             2146..3282
                     /locus_tag="VE223_01905"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HZC20375.1"
                     /translation="MGRFLGRKRNNKLDSDSPSENTTQKGYVLDNVEDIQKHDLYKKG
                     IDQMSNEKLEDAIRSFDLSLRIDPNYVDAWIKKGYAHFHLGEYNLAISSYDKALDIDL
                     NNAEAWNLKGLAYYKTRNYDEAIRACDKAIDINPNDAMSWYNKACYLALIGKVDDAME
                     ALKRSIEIDISFAKKAVRDRDFDNARAEEGFRRIIEVVVLEAIRQGYDYVGKIVWITG
                     MNTEEVEDAMMRLSMKGLTLKREKKSFVSKEEYYELTKDIAEKVGTARRSGFLGKTKE
                     VYAPLQQLRDISQIVNRAKESVEKGEVDATLDSFDQLISPAKHGSAMIEQFFDEHRDL
                     RLFQIRLKDKGQEYLNSHKPDLIRLLSDIDAKVRSGPVPKSNKD"
     gene            3601..4548
                     /locus_tag="VE223_01910"
     CDS             3601..4548
                     /locus_tag="VE223_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20376.1"
                     /translation="MKYFKSNYRIIVFFVTVTAFLIIPGGISMALSASSQSLKVADNI
                     IENHKNSSAIASPPSSRSDRFGIKEIYQTKQGGREWYINMKNPANDSIFTIGTGKDDN
                     ITRQSDGSWRIAYQKVRMSVDTPPGTPMWKNVEITGYAKVNSLFPHNGNSKIGYTDLA
                     WFARGGRHTQSSPCDGLALIGGIHDDGTVGWKKEIWFTGGYTDELGQAKVTDSIVGRW
                     IGWKVIMYNINNNSAVKMESYLDDKNNNHWVKVTDIIDDGGWFANTPDSIFYSANCGR
                     EKDYIITKPGPDVAFRSDNLVWDFKNLSVREIQPPIGGT"
     gene            4760..5347
                     /locus_tag="VE223_01915"
     CDS             4760..5347
                     /locus_tag="VE223_01915"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HZC20377.1"
                     /translation="MLGKENKRSSKVPIEIKCVIIVIIAVAIIWISIRAYFGVNNPFY
                     VVASESMVPKLKVGDMLLIKYAGTGSDSSSFDNLKIGDIIVFESPGVVEDTGHREVIV
                     HRVAEILTGLHGQRIIVTKGDANDGSIPGVDYPITANDYRGKVVYVIPGVGLIAKTIS
                     PPVNYILIAIILVVLFFLLRKRGIEQRNEGRRQVG"
     gene            5518..>6145
                     /locus_tag="VE223_01920"
     CDS             5518..>6145
                     /locus_tag="VE223_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC20378.1"
                     /translation="MAKIFADVSEKEITRTIANMFSETMAEYTDSDVIIIGAGPAGLT
                     AGRDLGRIGVKTLIIEQNNYIGGGYWVGGYMMNPVTVRAPAQKIWDELGVPYRKIREG
                     LYATWGPHACSKLIAATSDSGVRFLQLTKFDDLVLKNDRVGGVVVNWMPVSSLPRNVT
                     CVDPVALESRIVIDASGHDSVAVKRLMDRGYVKWKGMDPLWVEGSEDAV"
BASE COUNT         2071 a         1024 c         1284 g         1766 t
ORIGIN      
        1 tgggcattcc tgcatgtcgc catgggggta gcaatacatg ttgcattcgt attgcttccg
       61 cttggatttt tctatcgcag catatataac aaatacagta ttaatcatgc atacgctctg
      121 catctggcta caaatttagc actaattgga atatcattta gttcatattt cctactacaa
      181 tctggttcct aattcctgta tactttaata ccacaatcaa cacatatcgt taaattatat
      241 taacaagaag aatagcctgt ctcacaagtc cccagcgtaa tttggaatga gccttcataa
      301 cgtaaataag ataactcaag cactcaagaa tattttgctt ttattttttc tagtttttct
      361 ttttcttcgc atcagttatt taatcgtaga aaaagaatat caaagtaaaa gcatcttttt
      421 tatgaatcca gagcatatag attaaaagag acatagtaaa tgttttattt ttattaggaa
      481 acaatagcaa tagcatgaac tctataaccg caatggaaaa agagatcaga tatcagatag
      541 atgatttatc gaagttggat ttgcctagca aagctaactt agacaattgt ctaatagttg
      601 gagcaggtga ttcttacgtt gccgcactta tcacagaata tgtttcgaat tacaggacaa
      661 tatgttgtaa tccgatggag attgttttca accccgagat tataaagaat catagactat
      721 acataatttc agtttcaggt aatactaaat caaacatact tgcagcaaag atttcgaaaa
      781 aaaagaatat cccaacaact gcgatcactg caagacccga aagcaaactt gccaaaagct
      841 gcgatgaaat aatacaagtc cgctacaaaa gtacagggat cccaacttct ggtactataa
      901 gcttcacttc caacttgtta tgctgccttt ctctattagg taagataaaa agttttgatc
      961 accttaatat gatttacaag gaagcatata atgaagctga aaatatgatt tctacgacaa
     1021 ccggtacctc ttcctgttat atttttctgg ccagtggatt gttatttcca gttgcaattt
     1081 acggtgcatt aaagataaat gaggtttttg gactaaaatc ctttgcgtat ccttttgaag
     1141 aattctgtca ttctcctata ttcagtatta aaagcagtga taaaataata attcttggag
     1201 acaaaggata caatgacgat aaagaattaa acaggagact acagaattta ggtatcaact
     1261 cctgctatgt tgattgtgca aggaatgaca atagtaaaaa aacacaattg accgatagac
     1321 tgataaaagc tatcatgttg ttgcagttat ttgtgcttaa aaaagctacg ctggagaaag
     1381 tgaagaattg ttttttcttg gagaataagg agctgttgaa attgagttcc acttttattt
     1441 atcacaatga taaacagaca aagagaaaaa cgcattgata gcatttaact aaacaaattt
     1501 tgattccgag gataagtcga tagcagtaca tattgaatcg gacaaaattc taataataca
     1561 aggtatttta tgcaattatt ttatacaata ttaaaatgga taagatttta atgtctttta
     1621 tgcctattgt gcaaaaaact agtttctgat aaaacgaata tgaaaaactt tcaaatcttt
     1681 taaatttgat gcctgtaagt gtactactta cccatgcacc ccgatgattt aaatgccatt
     1741 tggctctgtc acgagtgtaa atgcagcttt gttttccact cagacgttga ggatcataag
     1801 gtaaagacag gccatacacc aatagagaaa tatgatctag tatcgggcga actgctcgcc
     1861 taaggcgttc tgagctttat tttgcaaaca atcatgatga atatagttag ttgttgtagt
     1921 agtaaaacgt gagaaatcct gatacggatt ccactatgtc tattgcgcct agttgcaagc
     1981 atccgaatca tgaggctttg tggcgttgcc gcacacaata cgctagcgat ttacagggtg
     2041 gtctatcata agctaataat gccgttaacg taaaggatat aatgatgaca gatgaggaat
     2101 aaatagtcca aatctattta tctgcgaagg gaacatttta tttcaatggg cagattttta
     2161 ggaaggaagc gcaataataa acttgactct gacagtcctt ccgaaaatac gacgcaaaag
     2221 ggctacgttc ttgacaacgt tgaggacatt cagaaacacg acttgtacaa gaaaggtatc
     2281 gatcaaatgt caaatgagaa actagaagat gccatccgta gctttgacct atccttaaga
     2341 attgatccca attatgttga tgcatggatc aagaaaggat atgctcattt tcatttaggc
     2401 gaatacaatc ttgccatttc ctcatatgat aaagccctcg atattgatct caataacgca
     2461 gaagcatgga acttgaaagg tctggcttat tacaaaacac gaaattatga tgaagctatc
     2521 cgagcatgtg acaaagcgat cgacattaac cctaatgatg caatgtcatg gtacaataag
     2581 gcatgctatc ttgcactaat tggcaaggtg gacgatgcga tggaagcctt aaaacgttca
     2641 atagagatag atatttcctt tgccaagaag gccgtacgtg acagagattt tgacaatgct
     2701 agagcagaag aaggctttag gcgaattatt gaagtcgtag tcttagaagc aataagacag
     2761 ggatatgatt atgtcggcaa aattgtgtgg attaccggca tgaatacgga agaggtagaa
     2821 gacgccatga tgcggctatc tatgaaaggt ctaacgctta aaagagaaaa aaaatcattt
     2881 gtaagtaaag aagaatatta tgaactcacc aaagacattg ctgaaaaggt aggaactgct
     2941 agacgttctg gttttcttgg caagaccaag gaagtatatg cacctttgca acagctaaga
     3001 gatattagtc aaatcgttaa cagagccaag gagtctgtag aaaaaggtga agtagatgcg
     3061 actcttgata gcttcgacca gctgataagt cctgctaaac atggaagtgc aatgattgag
     3121 caattctttg acgaacatcg ggacctaaga ctgtttcaaa tcagattgaa agacaaaggc
     3181 caagaatacc ttaactcgca taaacctgat ctaatcagat tgctttccga tatagacgcc
     3241 aaagtacgaa gtggtccagt cccaaaaagc aacaaggatt gaattagatt ctcatatgct
     3301 gacaaagacg acgccaaata aagtttggat tttatcatct cctttagcca agaagtgacc
     3361 cattgggatt attaaaagat acacttaaca tattctttca gtagtagcaa caacacattc
     3421 aagttgttgt tattgctgtt gtgttattca ttgcctctcg aacaagtcta tttataaata
     3481 gcagataatt gattgcagct acatatcatt ttggcacgct aatgcatttg tttagaaaac
     3541 acaaggacag ttgatttatg aggattacta taaataatgc attattattc tcattgtcaa
     3601 atgaaatatt ttaagtcaaa ttatagaatt atagtcttct ttgtaactgt cactgctttt
     3661 ttaattattc ctggaggaat ttctatggca ctctcggctt ctagccagtc attaaaggtt
     3721 gccgataata taattgaaaa ccacaaaaat agcagcgcga tcgcgtctcc tccaagttcg
     3781 agatcagata gatttggtat aaaagaaatc taccaaacca agcaaggtgg aagagaatgg
     3841 tatatcaaca tgaagaatcc agccaatgat agtatattca ccattggtac tggaaaggac
     3901 gacaatataa cgaggcaaag tgatgggtca tggcgtattg cttatcaaaa ggttagaatg
     3961 agtgtggata ctccgcctgg tactccaatg tggaagaatg tagaaataac aggttacgcc
     4021 aaagtaaact cattatttcc tcacaatggt aacagcaaaa ttggctatac tgatcttgca
     4081 tggtttgcaa gagggggcag acacacacag agcagcccat gcgacggatt ggcattgata
     4141 ggtggaattc atgatgatgg tactgtaggt tggaaaaaag agatatggtt cacaggtggc
     4201 tatacagacg aactgggtca agctaaagtc acggattcaa ttgttggtag atggattgga
     4261 tggaaggtaa taatgtataa tataaataat aatagtgcag taaaaatgga atcttatcta
     4321 gatgacaaga ataacaacca ttgggtaaaa gtaacagata ttatcgatga tggaggatgg
     4381 tttgcaaata ctcccgatag catattttat agtgcaaact gcggaaggga aaaagattac
     4441 ataataacta agcccggccc tgatgtggca ttcagatcag ataaccttgt atgggatttc
     4501 aaaaatctaa gtgttaggga gattcaaccc ccaattggcg gtacgtgaga aagcattttt
     4561 agtcacagcg ttgcgcatcc ctgtatattt gagtagcaat gcgccattag tttactaata
     4621 agatgcatat atgatatagc catggcggca aattcagttc tatgatctaa tctccatcaa
     4681 ggcacaaaaa gtttcagtaa gaattattgt tgttaagcta atggcttata tacaatagaa
     4741 aataaggtga aggtgtaaat tgctgggtaa ggaaaacaaa agaagttcga aggttccaat
     4801 tgaaattaag tgtgtcataa ttgtgattat tgccgtagca ataatttgga ttagtattag
     4861 agcgtatttt ggtgtcaata acccatttta cgttgtggcg agcgagagca tggttcccaa
     4921 actcaaggta ggagacatgt tgctcattaa atatgctggc acgggttctg attcttcctc
     4981 gtttgataat ttgaaaatcg gcgatattat agtctttgaa tctcctggag tggtcgagga
     5041 tacagggcat cgcgaggtta ttgtacacag ggttgcagaa attctgacag gtttacatgg
     5101 gcaaagaatc atcgtaacaa aaggggacgc caatgatgga tccattccag gggttgatta
     5161 tcctattaca gcaaatgatt acaggggaaa agtggtctat gttatcccgg gcgtagggtt
     5221 aattgcaaag acgatcagcc ctccagtaaa ctatatcctt attgcaatta ttctagtagt
     5281 acttttcttc ttgctgcgta aaagaggaat agaacaaaga aatgaaggac gacgtcaagt
     5341 aggttagaac acatataatc ttcgtgtata aaaggcagca ttcgtgacat ttattttggt
     5401 tccacaaaat cgcaagcgct attggtgtgc atatctgcct gctcacatgc aatcgtcaca
     5461 tattaacaag taatgagcta gatatattaa tatcacaaaa aagagaatat aatatctatg
     5521 gcaaaaattt tcgctgatgt aagtgagaag gagattacaa gaactatagc gaatatgttt
     5581 agcgaaacaa tggctgaata cacggattct gatgtaataa tcattggagc aggtccagca
     5641 ggattaacag ctggtagaga tctaggaaga attggggtta agacactcat tatagaacag
     5701 aataattaca ttggtggtgg ctattgggta ggaggatata tgatgaatcc ggtaaccgtc
     5761 agagcgccgg cccagaaaat atgggatgag ttaggagtgc cgtatcgcaa gatcagagaa
     5821 ggactttatg caacatgggg cccgcacgct tgttcgaaac ttattgcagc gacatctgac
     5881 tctggtgtca ggttcttgca attgacaaaa ttcgatgact tggtactaaa aaatgaccgc
     5941 gtaggtggcg tagttgttaa ttggatgcca gtttcttctt tacctagaaa tgtcacttgc
     6001 gtagatccag tagcactaga gagcaggatt gtcatcgatg catcaggcca tgattctgtt
     6061 gccgtgaaga gattaatgga ccgtggttat gtaaaatgga aaggtatgga tccgttgtgg
     6121 gtcgaaggaa gcgaagatgc agtag
//
LOCUS       DASQSJ010000090         2144 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_90836, whole genome shotgun sequence.
ACCESSION   DASQSJ010000090 DASQSJ010000000
VERSION     DASQSJ010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90836"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VE223_01925"
     CDS             complement(<1..434)
                     /locus_tag="VE223_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20379.1"
                     /translation="MQKNNKVLAAMSTAILIAVGIGTLTSNFAVSAFAYGSNYNYNNN
                     NNYNNYYNRNQIPTVVTIPLEGKSLAKGEFLLLSDTTPVLVNRAHIALNVPCEDNGNN
                     PQSDITVVAGVAPNVKPVDLTFIKQLSSPPGHCTYHANIPQDV"
     gene            1129..1731
                     /locus_tag="VE223_01930"
     CDS             1129..1731
                     /locus_tag="VE223_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20380.1"
                     /translation="MSNNTKTIGMSATIIVIATIMAFATFFTAATNVYAQGNTTGNAT
                     SSAAKPASSSSSASMQSPAASAANMGGAVTIQKTGVSAPDPLPGHSAHQLVMALPPRS
                     DGKVWVGTVTWTASKPVEVVVLHMYNSSITADAAHGQPLIAPFGKGSVAISLVKIPSG
                     TPVASGSIPFAGNAVAFHTLNGDKFVVTYTADATPKQLTK"
BASE COUNT          700 a          358 c          405 g          681 t
ORIGIN      
        1 acgtcttggg gtatattagc gtggtaggta cagtgacctg gtggagatga taattgcttg
       61 ataaatgtta aatcaactgg ctttacgttt ggtgctactc ctgctacaac cgtaatgtca
      121 gactgtggat tattgccatt atcttcacat ggtacgttta gtgctatgtg agctctattt
      181 actaggactg gagttgtatc tgataataaa aggaattcgc cttttgcaag ggactttcct
      241 tcaagtggga ttgttactac agttggtatt tggtttctgt tgtagtagtt gttatagttg
      301 ttgttgttgt tgtagttgta gttgctgcca tatgcaaatg ctgatacagc gaagttactt
      361 gtgagggtgc ctatgccaac agctattaaa atagccgtag acattgctgc aagtacttta
      421 ttattttttt gcattactga tataatatta tggatatcaa tataggaagt gttgtttatt
      481 gtactaagat atacgataaa acgaatgtac agtagtatgt attacaagac ggttatgaaa
      541 ttaatctatt tagtgtaacc tgagtatagt tagtagtata catcatacta tattttgtta
      601 aattaacata taacatgaca atcatttttc aataatagtg ctctactaat agatgaggtt
      661 gtgtgcaaac tgcccctggt tcatctactg cgactgatac cataagtgca ggacaaaccc
      721 aaagttgttt tatcatagac cactcaaacg gctagtttga gaactacatc acaaacggtt
      781 actactatcc taaggtagtg gaggactttg tagaagaaga acaagaataa ggataatgaa
      841 tggtgactcc aagcataaag atagtgaaga gacaaggaag gctatttatt attatccaga
      901 atcttgttca ggcatcgagt tttacatagc tgacaaacac ctcattcatt aagcaataca
      961 gtaaaacttg caaatgccat gttgttcatg ttaagtaaaa caattaaaat aggaaaaatt
     1021 actatggtaa cgtttatttt cttaaacatc ctattctgaa agtctttctc gatataagac
     1081 gttttatgta aaactctttt atagaaaatt gtcccttatg cagtacctat gtcaaataat
     1141 accaaaacaa tcggaatgtc agcgacaata attgttattg caaccataat ggcatttgcg
     1201 accttcttta cagcagcaac aaatgtttat gctcagggaa acactacagg aaacgctact
     1261 tcaagtgcag caaagccagc atcttcatct tcttctgctt ctatgcaatc tccagctgca
     1321 tctgctgcta atatgggcgg cgccgtgaca attcaaaaga caggagtatc agcgcctgat
     1381 ccattaccag gtcattctgc tcaccagtta gtaatggcac tccctccaag aagtgatgga
     1441 aaagtgtggg ttggtactgt aacatggact gcaagcaagc cagtagaagt agtagtattg
     1501 catatgtata attcaagtat aactgcagat gcagctcatg gccaaccatt gatagctcca
     1561 tttggaaagg gtagtgtagc aataagcttg gtaaagatac ctagtggaac acctgtagct
     1621 tctggttcta taccctttgc aggaaatgca gttgcattcc atacattgaa tggagataag
     1681 ttcgtagtaa catatactgc agatgctaca ccaaaacagc tgacaaaata ataacaatag
     1741 caagataata tagaaagaaa gagagaaaaa tacaaatatt cattcaatct ttattttttg
     1801 aaaaaccgct aatcaattca tattagtaaa ggctgttatt gtaataaaca aagcattgcc
     1861 atcatctttt aaataattat acgatagatt ctaacttgat taggaggctg gtatttttat
     1921 ggttatggct attgtaattt gcatttgctc atctaatcac ctgtccatga taagacgtct
     1981 aatactatct atagatgagt tcataacagc attggaaagc caaatctaag ctataatttc
     2041 ttataataat aaatacagga agaacaactt ttaacacgca tgcttaggag aataactgtt
     2101 acgatagcag tttttcttat ttctattatt ttacctaaca tgaa
//
LOCUS       DASQSJ010000091         2328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_449073, whole genome shotgun sequence.
ACCESSION   DASQSJ010000091 DASQSJ010000000
VERSION     DASQSJ010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449073"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VE223_01935"
     CDS             <1..234
                     /locus_tag="VE223_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20381.1"
                     /translation="KRIFQEMDESLLTSITNEREVIFAVFFCKNIAAVEAILTRLDSF
                     DGIRRIDAFITTKVIRYQDWLIREINKMIADQK"
     gene            complement(556..2124)
                     /locus_tag="VE223_01940"
     CDS             complement(556..2124)
                     /locus_tag="VE223_01940"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HZC20382.1"
                     /translation="MYTRDIIERGGWWIVFLIVLALGLSTAFYLYNLDRYSLIYFGDA
                     ASHLVESRKIIDWKDPGLEQLGTAWLPLPHILLLPFTLIDPLFNTGLAGLAVSLPSLA
                     LTCALFYMMMKANLSNSLSLVAFVSAFIYGSNPNILYMGLTAMTEAPFMLFFVSSAYY
                     FQKWQQSPDRLKNLVCCSIFISLATLCRYEGWVLPVFLISYVIILALKKKIRRGSRGY
                     AAIVSVISITGMVLWLSYNEYQYGNPMKFANAEYYSAAFQTVNRSTHESPILQSANVL
                     TVYSKTALIIYGPMLLAAAGSIGYILYSRSHMDINKICGLYMFLALPPIFTILTILLG
                     ISEITYWLNSRFLILLSPLIIVSVALLLGELMTIVKKRCGVLAVLIGVLFAFQFTSLA
                     FGVVTYMDAKSGFLFNVNPYAVQTGEALSSIYDRGNIMMLTGSAQEHRIMITSGIHLL
                     QFDEIIESSIWKKSFYEPWLYDKWLVISKEPNLDGVKTTKYWAQEKRNELNDHYRSIY
                     DNKYYEILVLRRTE"
BASE COUNT          710 a          450 c          450 g          718 t
ORIGIN      
        1 aaaagaattt tccaggaaat ggatgaaagc ttgttaactt caattacaaa tgaaagggaa
       61 gttatctttg cagtattctt ttgcaaaaat atagctgcag tagaagccat tttgacaagg
      121 ttggactctt ttgatggaat aaggaggatt gatgcattta taactactaa agtaattcgg
      181 tatcaggatt ggctgataag ggagattaac aaaatgatag cggatcagaa atagcatcaa
      241 atgtggtagc aatcttttgt ttggaaagaa atacagaaag atctagacct aatgtaaaag
      301 catttttcag taaccgacct gtacttgtca gaaccaaata ggtgatgcac taaaacctgt
      361 ttgcttttgt aatagtttcg attattgtgt tgtcacagtg gcatgaaccg agtgtctact
      421 gttcttgtct tgcttgctct gtcttttcct agagctttat ctttgcaaag aatgatgagg
      481 agaacttgat aggatgcatt attttttcaa atattttttg atgtctttat atggcttgtt
      541 tactggcagt cctatctatt cagtccgtct gaggaccaga atctcataat acttattatc
      601 atatatgctc ctataatgat catttagctc attccttttc tcttgagccc aatatttcgt
      661 ggtctttaca ccatccaaat taggttcttt gctgatcact agccatttat cgtataacca
      721 tggctcgtaa aatgattttt tccatatact agattcgatt atttcatcaa actgaagaag
      781 atgaattccg ctggttatca ttattctgtg ttcttgtgcc gaaccggtca gcatcattat
      841 gttgcctcta tcatatatag aactaagtgc ttctcctgtc tgtactgcgt acggatttac
      901 attgaataag aatccacttt tagcgtccat gtatgttacc actccaaaag ctaggcttgt
      961 aaactgaaaa gcgaataaca ctcctatgag gaccgccagc acaccacatc ttttctttac
     1021 tatcgtcatc aattctccga ggagtagcgc tacagatact attatcaaag gtgatagcag
     1081 gatcaaaaac ctggaattaa gccaataggt tatctcgctt attcctaata gtattgttag
     1141 tatcgtaaag attggcggaa gagccaaaaa catatacaat ccacatatct tgttgatgtc
     1201 catgtgggat cggctataca agatgtaccc aatcgagcct gcagccgcaa gaagcatggg
     1261 tccgtatatg atcagtgcag ttttactata aactgttaag acatttgctg attgcaggat
     1321 tggactttcg tgcgtcgacc tgttgactgt ttgaaaagct gcagaatagt attctgcatt
     1381 tgcaaatttc ataggattgc catattgata ttcgttatag gaaagccaca acaccattcc
     1441 agtaatggat atgacggaaa caatggcggc gtaacctcgg cttcctctac ggatcttctt
     1501 ctttaatgca agtataatga cataggatat caggaataca ggaaggaccc atccttcata
     1561 tctacagagt gtggcaagag aaataaaaat tgaacaacaa accaagttct ttagccgatc
     1621 tgggctttgt tgccacttct gaaaataata tgctgaagat acgaagaaca gcataaatgg
     1681 agcctctgtc atggccgtga ggcccatgta caggatgttg ggatttgaac catagatgaa
     1741 agctgatacg aatgctacta atgaaagact gttgcttaag ttggctttca tcatcatgta
     1801 gaataatgca caagttaatg cgagacttgg taggcttact gccaagcctg ctaatcctgt
     1861 gttgaatagc ggatctatta gagtgaacgg cagtagcaaa atgtgtggca atggaagcca
     1921 tgcagtaccc agctgctcca aacctggatc cttccaatcg ataatctttc ttgattctac
     1981 taggtgagaa gcagcgtcac caaaataaat cagagaatat ctatccaaat tatacagata
     2041 gaatgccgtt gataggccaa gtgcgagtac aataagaaag actatccacc aaccgcctct
     2101 ctctatgata tctcgtgtat acaaggtcta caatatgaac atcgaccatc acatccattt
     2161 tgactttacg tttgatagga tcgaaagata tcgatccgca atttgtcttc ctgatccatc
     2221 gtattcctat gttcgaaata atccctatgg tacatattga tcaagaacca ttacatctaa
     2281 tgtcttcaga tctgcctcga gtgctactaa caaaccttaa tttcttaa
//
LOCUS       DASQSJ010000092         2123 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_449130, whole genome shotgun sequence.
ACCESSION   DASQSJ010000092 DASQSJ010000000
VERSION     DASQSJ010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449130"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(23..1726)
                     /locus_tag="VE223_01945"
     CDS             complement(23..1726)
                     /locus_tag="VE223_01945"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZC20383.1"
                     /translation="MTAELKVHPSFFREFATKTWVSPNEIVKELIENAFDEDATQVIV
                     TTLKDGSVVIEDNAGMDQKSMEKFLLLGSPHKTHDPISPKLKRVRTGRYGTGRLSFLT
                     SFEKMKIRTRRDDFNLSVVIDGNTLDNLFSGNARLEMLKELPIGRNGTELSLIGSKLA
                     MDNFRLSKEIRKLAILRQPMFEVYIKSADNFVEWDFNNAQLIRAPDIQGHRIPVDLDN
                     GQILGEIVIARRPLSEDEKGIAVLVGNHAVTRSNFGFDTKFNRVTGYVRCDMLTSRFA
                     DKSALIEDEEYAKFNKQMKTFIIDVVIPGLTQYEDVLITREESKIYKEIDKVLGQAII
                     DNIESREEVQGYEMVDIKVAADVRSEVAEALNLKKDKEITSQVPTASNQENNDTLTSP
                     EQKKSFEETDSSHQDLQKSEPIMLNYTQIQQQQTIPKESSLPMTDSLAPHGLQKAEGA
                     DPADKEQRDRTLIKVRKPIVKKTFALKKIGYKVIPYEDESDSRYSFTNENVVFVNKAN
                     STYRAEASRGDEFLLRHIIGIVAEVIAQTKHPEGKDALEFLNRLVSEAIRIHDDSVIK
                     K"
     gene            complement(1940..>2123)
                     /locus_tag="VE223_01950"
     CDS             complement(1940..>2123)
                     /locus_tag="VE223_01950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20384.1"
                     /translation="LMQLKIFHQERHHRLSQFVKRIIFRYGIIGFNGNISQRRILAQY
                     ALSKKYHHRKNNNPIC"
BASE COUNT          575 a          436 c          356 g          756 t
ORIGIN      
        1 caaataatac taagaatgat gatcattttt ttattacaga atcgtcatgg attcttattg
       61 cttcagagac aagcctattc agaaattcga gagcatcttt tccttctgga tgttttgttt
      121 gggctatcac ttccgcaaca atcccaatta tatgtcttag caagaactca tcaccacgag
      181 atgcttcggc acgataagtg gagttagctt tgtttacgaa tactacattt tcatttgtaa
      241 aactgtagcg agaatccgac tcatcttcgt atggaatcac cttataacca attttcttta
      301 atgcgaatgt cttcttaaca ataggttttc ttacttttat cagcgttcta tcacgctgtt
      361 ctttatcagc tggatccgca ccttctgcct tctgaagacc atgtggagca agcgagtctg
      421 tcatcggtag cgatgactct tttggaatcg tttgctgttg ttgtatttga gtataattca
      481 gcattattgg ctcagatttt tgtagatctt gatgcgaact gtcggtttct tcgaagcttt
      541 tcttttgttc aggacttgtt aaagtatcat tgttctcttg gttggatgcc gtcggaacct
      601 gagaagtaat ctctttgtcc tttttaaggt ttaaagcttc agcaacctca gaacgaacgt
      661 cagcagctac cttgatgtca accatctcat atccttgtac ttcctccctg ctctcaatat
      721 tgtcaataat cgcttgtcca aggaccttat caatttcttt gtagatcttg gattcttccc
      781 tggtgatcaa aacatcttcg tattgcgtta agcccggaat gactacatca attatgaacg
      841 tcttcatttg tttattgaat tttgcgtatt cttcatcttc gatcaatgca gatttatctg
      901 caaaacgtga agttagcata tcacatctaa cataaccagt tacacgattg aatttagtgt
      961 caaacccaaa gttgctacgt gtcactgcgt ggtttccaac caggactgct attcccttct
     1021 cgtcctccga gagtggtcgt cttgctataa ctatttcgcc aagtatttgg ccattatcaa
     1081 ggtctactgg tatcctgtga ccctgaatat cgggagctct aatcaactgt gcattattaa
     1141 aatcccattc cacaaagtta tcggcacttt tgatatatac ttcgaacatt ggctgcctta
     1201 aaattgccag tttacgaatt tcttttgata atctaaagtt atccatagct aatttggaac
     1261 ctatcaagga caattcggtc ccatttctac ctataggtaa ttcctttagc atttctaatc
     1321 tggcattacc agagaaaaga ttgtccaaag tattaccgtc gattacaaca gacaaattaa
     1381 agtcatctcg tcttgttctt attttcattt tttcaaaaga agtaagaaag gataaccgtc
     1441 cagtaccata tcttcctgtc ctaacccttt ttaacttagg ggaaatggga tcatgggtct
     1501 tatgaggtga tcccaatagc aagaattttt ccatactctt ttgatccatt ccagcgttgt
     1561 cttcaatgac tacagatcca tcctttaaag ttgttacaat cacctgtgta gcgtcttcat
     1621 caaaggcatt ttcaattagc tctttcacta tttcatttgg agaaacccat gttttagttg
     1681 caaactctcg gaaaaatgat gggtgaacct ttaattcagc agtcattcct tacttgacct
     1741 gctatcttcc tacctttatt tattacgtgt aaaattattg ttgacagttt tgtcacacgt
     1801 ctatatacta ttagaaaggc tgtgttcatt taacggttat gcatatctac aaacaaacag
     1861 attaagtcaa tgcataatat gctcctgcac tttttttgta caaggaaaac aagagtcatc
     1921 aaagcactcg gttctatctt taacatattg gattgttgtt ctttctatga tgatactttt
     1981 ttgaaagggc atactgtgca agtattcttc tttggctgat attaccattg aatccaatta
     2041 ttccatatcg aaatatgatt ctcttaacaa attgagacaa ccggtgatgt ctttcttgat
     2101 gaaagatctt tagttgcata aga
//
LOCUS       DASQSJ010000093         4984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_363514, whole genome shotgun sequence.
ACCESSION   DASQSJ010000093 DASQSJ010000000
VERSION     DASQSJ010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4984
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363514"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1163..1297
                     /locus_tag="VE223_01955"
     CDS             1163..1297
                     /locus_tag="VE223_01955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20385.1"
                     /translation="MDAVQVMKLITTSYMTLGIQVKPKAWIEKNKDKVTTAEVTSRLA
                     "
     gene            complement(1778..2299)
                     /locus_tag="VE223_01960"
     CDS             complement(1778..2299)
                     /locus_tag="VE223_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20386.1"
                     /translation="MESHFRIERLGRPRKIYSLTENGQELFPRKYDLILSLILKKISE
                     TNGQEQARKLIESVADDIADGIKYEIKKSGNLGNFEESLKILNSVSDHMGFASSITKE
                     DDKKFSIQSKNCILHKVAVSHQNIVCHGLHDRMIIKSLGGDDSDEKKHGISVELKQCI
                     ALGDSFSRHVVTK"
     gene            2588..3406
                     /locus_tag="VE223_01965"
     CDS             2588..3406
                     /locus_tag="VE223_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20387.1"
                     /translation="MQNKNTKNKRRKMAVEVIAISAAMVFALVSNINGHNMQIAIAAT
                     KNNNSPTTISSSSSSNPNQMMSSSSTTSLGSTDKASKLVLALRDLWVDHTGWTRNYII
                     SFVAGLPDTNLVAQRLLKNQEDIGNAIKPFYGSEAGNKLTSLLKDHILGAVDLLKAAK
                     AGNTTGAAAAEKKWYENADQIATFLSTANPNWSKVALKNMLDNHLALTKAEAVARLTG
                     NYAADIATYDKVRQEANMMSDALVDGIVKQFPDKFSSTVATTSTTTTIPTTITE"
     gene            complement(3664..4065)
                     /locus_tag="VE223_01970"
                     /pseudo
     CDS             complement(3664..4065)
                     /locus_tag="VE223_01970"
                     /inference="COORDINATES: protein motif:HMM:NF018748.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1348 family protein"
     gene            complement(4170..4433)
                     /locus_tag="VE223_01975"
     CDS             complement(4170..4433)
                     /locus_tag="VE223_01975"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20388.1"
                     /translation="MKIIYTITEEVVESKPDQKSSSASEWTGERGRIDKAMLNKYLTD
                     DELKDSIFYTCGPPGMIKAMQDLLQHDIKIPKEEIIVEEFTGY"
     gene            4552..4806
                     /locus_tag="VE223_01980"
     CDS             4552..4806
                     /locus_tag="VE223_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20389.1"
                     /translation="MKQDIFIELAGELRCSILLKLREKGEYKQSLLTKDLDVTVQEAH
                     RQVERLVNTGLVYRDSGFLRLTPYGSIIVGQLPCFDFNLI"
BASE COUNT         1603 a          912 c          848 g         1621 t
ORIGIN      
        1 ttggtgaaag gtggagaaat gagacctcca aatgggttgg tagcaactac ctctgttata
       61 gatgcgtcaa taaattcatt aacgacccat ttggatatac atcacacgaa gagcagtata
      121 taacaaatcc tcatgatata attctgttaa attatggtgc atcattgcct agctccatat
      181 caaggtcaag gcctgtaata gcatcatagg aattgaatta tcaaagagga agggtaatag
      241 cacttgggat ttattctgaa gatgtactat ctaatggcag atttgatagg tatcttgata
      301 gtcttttgtt acagtacgat ataaaaataa gggattaaac cataagatac actattatta
      361 gttttattgc tacctcgaaa ctaaccacac attccatgtc atcatacata tggtaaaatt
      421 tcttgacttt ttcaatagca aaagatacaa caactacttc tcctactagt aatactacta
      481 ctgctaggtc tccaacagga attccaggaa tgccttagat atgataataa tgttcgatat
      541 aatcgcagag aagaagaatc cgttcttata ttataagatc ctatacagtg aaggcgagat
      601 aattgaaatg gcaatactag caacatcatt tcgactgata agcagtatcc aaaattatca
      661 aaggctactt cagattgttt agaaattgaa cacttcaaaa atgcagacct acatactggc
      721 ttcttctgtt acaattgtac ctattttatc aagccaaatc attgtgcaat tgttgatgac
      781 agcggacctg atgtatacaa taaagaatcg ggagttatag caccatatgg actatgtacg
      841 ttatgggatc ctaatgaaca ggagacacgc taacgtgaaa agaaaagagg aaaaaagaaa
      901 aggagtgaaa taagagaaat gtaagattac tgacaaaata aaagaaaaag taggagcaat
      961 tgataatctt tcaaagtttc agaaattcag caagctcaaa gcatcatata tagagtacga
     1021 taagtttgca gattctaatt tacacgaggg ctatttctgc tacatctgta tttattggat
     1081 taacgttagt ggtggaaaag tacgctagta gaggataatg gtccggatgt attaggaaaa
     1141 gtttcagaag ttattgctcc gcatggatgc tgtgcaggtt atgaagctaa ttacgacaag
     1201 ctacatgaca ctaggaatcc aagtgaagcc caaggcgtgg atcgagaaaa ataaagataa
     1261 agtgacgact gcagaagtaa cttcaagact agcataaaaa tattcttaat tcgtgttgag
     1321 gccataaaaa ggctgatggt ttcctagtac ggctagccag aatggcacat ttccagtagg
     1381 gatccattta acaatttcca agttattggt atctataaca acattgcttc agtagacaca
     1441 tcaacatata gacgcctcct atcagagctt gtgtatattt attccaatgt ggacccttgc
     1501 cttccgttgt ctactttaca agttcctgtt tattttcatc aataacattt gccttgtctg
     1561 agccaatttc tgatacgtat acgcgtttat tatttggtga aagatcaata ccatgatttc
     1621 tatacttata ggtattttct ttactacatt caaagtggtt gtattaataa tagaaacatc
     1681 atttgaggcg catttgcaac gaaaggcaat ttaccatcat ttgaaatatc caaattatga
     1741 ggtctcatgc ctgttactat tcactaatag gatcttctta cttggtaact acatgtctag
     1801 agaagctatc tcctaaagca atgcattgct ttaattcaac actaatacca tgtttttttt
     1861 cgtcactgtc atcgccacct aatgatttaa ttatcattct atcatgaaga ccatgacata
     1921 caatgttttg atgacttacc gccactttat gtagaatgca atttttgctt tggatggaaa
     1981 atttcttatc atcctctttg gtgatagaag aagcaaaccc catatgatct gaaactgaat
     2041 ttaatatttt caatgattct tcaaaattgc ccaaattacc acttttttta atttcatatt
     2101 tgataccatc cgctatatca tctgcaacag attcaatcaa tttccgtgcc tgttcttgtc
     2161 catttgtctc gctaatcttt ttgagtatta atgatagtat tagatcatat tttctaggaa
     2221 atagttcctg tccattttct gttaagctgt atatctttcg cggtcttcct aggcgttcga
     2281 tcctaaagtg cgattccact gttttttctg attgtaatga ttctaaatga acccttacag
     2341 cactcttttg tatttgcagt ttgtctgtaa tttctcctca agaccttgga ccttccagaa
     2401 gtatatccat gatcttttgt tttgtagttc cagagattcg tctttcttcc tctttattat
     2461 gattaaacaa ctgataatat tattttaagc attattgtat atatatagtg tttttattta
     2521 tgttttaggt attatatata cttaatagta aataaaatat atatagtacg actaatgtct
     2581 tattaacatg caaaataaaa atacaaagaa caaaagaagg aagatggctg ttgaggttat
     2641 cgcaatttca gcagcgatgg tatttgcgtt ggtatccaac atcaatggac acaatatgca
     2701 aattgcaatt gctgctacta agaataataa tagcccaaca acaatcagtt cttcctcctc
     2761 ttctaatcca aatcagatga tgtcgtcttc ttctactact agtctaggat ctacagacaa
     2821 agcaagcaaa ctagtcttgg ctctacgtga tctttgggta gatcacacag gatggacccg
     2881 aaattatata ataagttttg ttgcaggttt gccagatact aatcttgttg cacaaagact
     2941 tcttaaaaac caagaagata ttggaaatgc aataaagcct ttctatggta gtgaggcagg
     3001 taataaattg acaagcttgc ttaaggatca tattttggga gctgtggatc ttctcaaggc
     3061 agcaaaggca gggaacacga ctggcgctgc agcagcagag aagaagtggt atgaaaatgc
     3121 agaccaaatt gctacctttc ttagtaccgc caaccctaac tggtcaaaag tagcattaaa
     3181 gaatatgtta gacaatcact tggcactgac aaaggcagaa gccgttgcta gacttacagg
     3241 aaattatgca gctgacattg ctacatatga taaagttcgc caagaagcta acatgatgtc
     3301 agatgctctg gtagatggaa tagtaaagca atttcctgac aaattttctt cgactgtcgc
     3361 taccacaagt acaacaacta ctattcctac tacaataact gaataatcta caatcaactg
     3421 cttgacagtt aaacccatca tccttttcct tccacttttt ttgagaaatg gcaggtaaat
     3481 tctgtcagta tataaccgtt ctactttaag tgtcaatatc tccgatctag agttataact
     3541 ggctgacaca atgtttgcca cataacgacg agaagattta tgaatgataa tatattcctg
     3601 tgcaagtaca gtgcagcatt gttattatat agtcttatat ctaactcttc ttttttctac
     3661 gacttattta acaacaacta tttgcgataa cgtcgctctg actctgatag gataatcatt
     3721 ggcactcata tctcgtatac gcatcaaacc gttatcatca aactccgaat gctcattacc
     3781 atgagtgcgc atccattgac caggattgtc agcatctctc cactcatatt caaaccttac
     3841 agaaatgcga tttcctgtat aacactaaag ttccttcata agatggtaat cacgttcctt
     3901 agcccatttt cgccttagaa aatcgattat agcttctctg ccagtgaaca attcagtacg
     3961 gtttcgccac ttagaatctt cagtatatgc catggacact agttctggat tgtatgtatt
     4021 ccaagcgttt tctgcagctt taactttcag cttggccttt tcctcatcaa atggaggttg
     4081 atgtcagttg gtttagtagt ggcagtagcc ataggacctg ttttgaaagg tatgtcacat
     4141 atattatgat tattctattg tgttttttat tagtaacctg taaactcctc tactattatt
     4201 tcctcttttg gaatttttat atcatgttga agcaaatctt gcatagcctt tatcataccc
     4261 ggaggaccac aagtataaaa tattgagtcc tttagttcat cgtcagtcaa atatttgttt
     4321 aacattgcct tatctattct tcctctttct cctgtccatt cgctagcaga agacgatttt
     4381 tgatctggct tggattctac tacttcttct gtaatagtat aaatgatttt caaattctta
     4441 tttcaacctt ctaataccca agtaattatt ccagtgctgg gaggagaact agattactaa
     4501 tatactaaaa aatagtaaac ctaaactaag tctgtcaact tcctattacc attgaagcaa
     4561 gatatattta tagaactcgc aggcgaatta agatgttcaa tacttttaaa acttagagaa
     4621 aaaggagaat acaaacaaag tctactcaca aaagatctcg atgtaacagt tcaagaagca
     4681 catagacaag tcgagagatt ggttaacaca ggattggtat atagagactc tggatttttg
     4741 cgtcttactc catatggttc tatcatagta ggacagcttc catgttttga ttttaatcta
     4801 atttgaaaat atagcagtca gtaaataaca ccattgatgt gtgtcgtttt atgtgaaatg
     4861 ccctaaccaa tttttagaaa ttgtctgtgt ataaagcctt ttccaataaa tgaatatctc
     4921 tatgacaatg gcaaacgcat aatgatttga ctgatgtgaa ctcatgaacc cttaatacaa
     4981 taaa
//
LOCUS       DASQSJ010000094         6269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_284036, whole genome shotgun sequence.
ACCESSION   DASQSJ010000094 DASQSJ010000000
VERSION     DASQSJ010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6269
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284036"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            499..1074
                     /locus_tag="VE223_01985"
     CDS             499..1074
                     /locus_tag="VE223_01985"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20390.1"
                     /translation="MGNVRRSRGYSFEHTLVQRLNCGDWNARRLGGSSTGLPDIIAVN
                     NIDATLLSIEAKSGTGNILYVPQDQIKRSLIIRNMFSFYKTRHFILAFKFMTKKRFKR
                     KGAVVYEHRKLIEYYKVADIFEDMQDIPIVKCTYDGKTFAIQRKKSVKINLPDYIMPF
                     QRISSKALHTEPVHSSSLSSSTKSVRIKKHI"
     gene            1107..1805
                     /locus_tag="VE223_01990"
     CDS             1107..1805
                     /locus_tag="VE223_01990"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HZC20391.1"
                     /translation="MKKKQMAKEKAITSDQMYKIEENGHNLLGMRRVYMMENAGHGLA
                     DFIITKFNTTLNGKAIVVICGSGNNGGDAFVASRHLSGYYNAKVTVILLGFPADLRTE
                     EAKINWGIIENMSSIETMFGNGMTDKIKRKISKANIIIDGIFGTGVKGEIRDPHASAI
                     EMINKSKAYVVSVDIPSGIDPNTGEAHDICVKANATVTFHRMKIGLVNNRKYTGLIHL
                     ERIGIPQEAERGVV"
     gene            1812..2438
                     /locus_tag="VE223_01995"
     CDS             1812..2438
                     /locus_tag="VE223_01995"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HZC20392.1"
                     /translation="MKSKIIQIPVGQMANFSYVIADEESSQAAIIDPSWDLEKIFDLL
                     KRNKWIAKYIINTHTHFDHVLGNEQVAEITGAHIVQHKSSNLIKQVSVSDGDIIKVGS
                     IIIKTLHTPGHSQDSICLVANDEMVFTGDTLFVGNCGRVDLPGSNPRDMYNSLFQKVA
                     KLEDSLVIYPGHDYGPHPTSTIGQEKKTNYVLQPRSLQEFLGFMASDD"
     gene            2442..3572
                     /locus_tag="VE223_02000"
     CDS             2442..3572
                     /locus_tag="VE223_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00303 family protein"
                     /protein_id="HZC20393.1"
                     /translation="MYEEKRQAEYCDIASLNQSCSRLNEFSTSNPIFICVISYTATSE
                     IPGITMAGANGDLLKFTSAADSEFLYYGYCKCINGVPVTPDGKPTPAIVTRSALLLTG
                     IPFLIVDAGTKIKPYIPYISFNVGSGNNIKSHDAIDIGDVKKAYDYGIVLGKQLSKSN
                     DLVVVGESIPGGTTTALGVLTALGIDAKFKMSSSMPENPHVLKNDIVDESVKRVGISY
                     GGLKDDPFKAISLFGDPMIPSVAGIAAGVMISRGRVMLAGGTQMSAVVATLNSLRIPI
                     DNLCIGTTSYVARDRSSNLVDLMNLICADIPIYSSNLHMIESSKPGLRAFAKGYVKEG
                     VGSGGVSITSMLRSKGSIDGTILLKAIEHEYESALEKALIEP"
     gene            complement(3865..4398)
                     /gene="mntR"
                     /locus_tag="VE223_02005"
     CDS             complement(3865..4398)
                     /gene="mntR"
                     /locus_tag="VE223_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HZC20394.1"
                     /translation="MKARANANDDRLKWIRDAHNIKKEDDEQQHTDRMEDYLEVIYEL
                     IQKKGYATAIDISESLNVSSPSVTKMLRRLDSSRYLRYEKYRGICLTQEGIDVAKSIH
                     EKHGLLSDFLKMIGVDENTANIDAEGIEHHIHPETLKKLERFVKVVKNSAEFSPMQDQ
                     KLHTDGKNNSPLSSKTK"
     gene            complement(4769..5125)
                     /locus_tag="VE223_02010"
     CDS             complement(4769..5125)
                     /locus_tag="VE223_02010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20395.1"
                     /translation="MCQITVDLQRRAEHPSLVPLLGFVITNILFYFGGWILGISDIIG
                     VVAAIQSIFFGLILLMFILHETSNAFADVYSAAVSTQSIFHKIKQRYLIIGLTVLSIV
                     HAIIVCQFHNTGDFFF"
     gene            5811..6074
                     /locus_tag="VE223_02015"
     CDS             5811..6074
                     /locus_tag="VE223_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20396.1"
                     /translation="MTCKGICIRHKAQKPSGSGRYATGQKRCQVCELFMRWDGFWCPC
                     CGYRLRTRPRNLKYKAKLKARKEIEEAKILLSVRNGKSTTTQK"
BASE COUNT         2146 a         1044 c         1184 g         1895 t
ORIGIN      
        1 gttcctaaat aagagaattg agtttgagaa tagtgcaacc tataatgaaa tcacgttaag
       61 atatattatc tgctgctaga tcagaagctg gcaatatcgt ttttcccctt atagcaatcc
      121 aattctacta gactgctatt ataataatgg ttagcatgaa ggcattttag agatagcaaa
      181 agttccataa gatccattaa aacagctacc gtataagaat atagtaatac taaaataact
      241 agtagtacat aatttgttat ctctatctaa cgagtgatta cgagaaggtg tatcaattat
      301 ccacaaatct ccaagaatag tactattgta agttaggatt tcaaataatt acaatagaaa
      361 ctatttcgag ctgtggacac ccatatttaa cgtgttgcta taatggatca agttattata
      421 tactcctttt atcatcaaca tccatcaata ttgctcgtga ggagttagag aatgtacatt
      481 gtaaggggag tggcttaatt gggtaatgtt cgtagaagca gaggatatag cttcgagcac
      541 acattggtac aaaggctcaa ttgtggagat tggaatgcca gacggttggg cggttccagc
      601 acaggcttgc cagacatcat tgctgttaac aatatcgatg ctactttgtt atcaatagaa
      661 gcaaaatcag gaacagggaa cattctatat gtccctcagg atcaaataaa aagaagttta
      721 attatacgaa atatgtttag cttttataaa actagacatt ttatattggc cttcaaattt
      781 atgacaaaaa agagattcaa aagaaagggt gcagttgttt atgaacatcg taaattaatt
      841 gaatattata aggtagcaga catctttgag gatatgcagg acattccaat tgtaaagtgc
      901 acttatgatg gaaaaacttt tgccatccag cgtaaaaaat ctgtaaagat taacctgcca
      961 gactatatta tgccttttca aagaatatca tccaaggctc ttcatactga acctgttcat
     1021 tcttcttcgc tatcgtcttc aacaaaatct gttcgtataa aaaagcatat ttagtagtta
     1081 cttttttctc ataatggcat cagtctttga agaaaaagca gatggcaaaa gaaaaggcta
     1141 tcacttcaga tcaaatgtat aaaatagaag agaatgggca taatctgtta gggatgcgta
     1201 gagtttatat gatggaaaat gcaggtcatg gacttgcaga tttcataatt accaagttta
     1261 acacaacttt aaacggaaaa gcaattgtcg tcatatgcgg tagtggcaat aatggaggag
     1321 atgcttttgt cgcatcaaga cacttatcag gttactataa tgccaaggtg acagtaattt
     1381 tgttaggctt tcctgctgat ctacgaacag aggaagctaa gattaactgg ggaataatag
     1441 aaaacatgag ttccatagaa accatgtttg gcaatggaat gactgacaaa attaaaagga
     1501 aaatttccaa ggctaatatt attatcgatg ggatttttgg aactggagta aaaggagaaa
     1561 ttcgtgaccc tcatgcgtct gctattgaaa tgataaacaa atcaaaggca tatgttgttt
     1621 cggttgatat tccttctggg atagatccta acacaggcga agcgcatgat atctgtgtaa
     1681 aggctaatgc aacagttaca tttcatagga tgaaaattgg acttgtcaat aacagaaaat
     1741 acactggatt gattcacttg gagcggatag gaattcctca ggaagctgaa agaggagtag
     1801 tgtaatttgc tttgaaatcg aaaattatac aaattccggt tggccaaatg gcaaatttta
     1861 gctatgttat agctgatgaa gaaagcagtc aagctgctat aatcgatcca tcatgggatt
     1921 tagaaaaaat ttttgatttg ttaaaaagga ataaatggat tgcaaagtac attatcaata
     1981 cccatactca tttcgatcat gttctgggca atgaacaagt ggccgaaatc accggcgctc
     2041 acatcgttca gcataaaagt tcgaacctta ttaagcaagt atctgtatct gacggcgata
     2101 taattaaggt aggaagcatt attataaaga cattgcatac accgggccac tctcaggaca
     2161 gtatttgtct tgtagctaac gatgagatgg tgtttaccgg tgatacatta tttgttggga
     2221 attgtggaag ggtagacctt ccaggaagta atcccagaga tatgtataat agtctatttc
     2281 aaaaagttgc aaagcttgaa gattctcttg tcatttatcc aggacacgat tatggaccac
     2341 atccaacatc cacaattggt caagagaaaa aaaccaatta tgtgttgcaa ccaagatcat
     2401 tacaagaatt tcttggattt atggcaagtg atgactagca gttgtatgaa gaaaaaagac
     2461 aagcagagta ttgtgacata gcaagtttaa atcaatcatg ttctaggttg aatgaatttt
     2521 caacatcaaa tccgattttt atttgtgtaa tatcctacac tgcaactagt gaaatcccgg
     2581 gtatcactat ggcaggagca aacggagatc ttctaaaatt tacttcagca gcagattcag
     2641 aatttcttta ttatggatat tgcaaatgca ttaatggagt tccggttaca cctgatggaa
     2701 aacccactcc tgccattgtc accagaagtg ctttactatt aacaggcatt ccatttctta
     2761 tagttgatgc aggtacaaaa attaaacctt acattccgta tatttcgttt aatgttggat
     2821 ctggaaataa tatcaaaagc catgatgcca tagatattgg cgatgttaaa aaagcctatg
     2881 attatggtat tgtacttggt aaacaacttt caaaaagtaa tgatttggta gtagtaggcg
     2941 aaagtattcc tggtggcacc actactgcat taggagtttt aactgcactt ggaattgatg
     3001 caaaatttaa aatgagtagt agtatgccag agaatcctca tgttctcaaa aacgatattg
     3061 ttgatgaaag tgtgaaaagg gttggaataa gctatggtgg gttgaaagat gacccgttca
     3121 aggcaatatc tctatttgga gatccaatga taccttctgt tgctggtatt gctgctggcg
     3181 taatgatctc caggggtaga gttatgcttg ctggtggaac acagatgtct gcagtagttg
     3241 ctacattgaa ttcactgcgt ataccaattg ataatttatg tattggaaca acgtcatacg
     3301 tagcaagaga tcgatcttca aaccttgtcg accttatgaa cttaatttgt gcagacattc
     3361 caatttattc gtcaaacctt catatgatag aatccagcaa acctgggtta cgggccttcg
     3421 caaaaggtta tgtaaaagaa ggggtaggat ccggcggcgt ttcgattact tcaatgctta
     3481 gatcaaaagg cagtatagat ggaacaattc tactaaaagc tattgaacat gagtatgaaa
     3541 gcgccttgga gaaagctctc attgaaccat gaaggaatat gagctggggt attaaaagag
     3601 gcacgtctta cgatttattt atttatggtc ataatgcaag atctataaat aggatatatc
     3661 atgcgaatat gactgcctaa ataaatggga agacaagcaa ttgttttcga ctataatgct
     3721 aacgataaga agaacctcac gataatataa aacaaacaac ataacgtgca ttgttcttta
     3781 acaatataac gcatattaat ggaaatattt actactacct acgcctgacg ttgttggttt
     3841 gtactcattc ttatttacat catcttattt agttttgctt gataatggag aattattttt
     3901 tccatcagta tgcaattttt gatcttgcat tgggctaaat tctgcactat tttttacaac
     3961 ttttacgaat ctctctaact tttttaaagt ctctggatgt atatggtgct caataccctc
     4021 agcatcaata tttgcagtat tttcgtctac tccaatcatt tttaaaaaat cagacaataa
     4081 accatgcttt tcatgtatgc ttttcgcgac atcaatcccc tcctgcgtaa ggcagattcc
     4141 tcgatacttc tcataacgca ggtatctgct gctatccaac ctacgaagca ttttggttac
     4201 gcttggagag ctcacgttca gagattccga tatatctatt gctgtagcat atcctttctt
     4261 ttgtatcaac tcataaatga cttccaggta gtcctccatt ctatccgtgt gttgttgttc
     4321 gtcatcttct tttttaatat tatgtgcatc acgaatccat ttgagacgat cgtcgttggc
     4381 attagctcgt gctttcaacg tccttaagag atatcaataa accttcacat ttacctttct
     4441 gtcccaacgc agattaatca atacaacaag tttacctttt aattacttaa gataataacc
     4501 tatcgagttt attttcatta taccaaggta aagaagggaa gacccagtga agcttgggat
     4561 cgttgaacct atctgaggag aaatatacat ggatgatatt gaagacaaaa ggtaatatat
     4621 cagactccaa gcgaccatgc aataattgca ggaaaaccaa tactcaaggc actacttccg
     4681 tacatcaatg tcgtttcata atggcgatct ttgacaatat aatagtctga tataacgatt
     4741 ccaaataaag gaacaaatac cgctcctatc agaagaagaa atctcccgta ttgtgaaatt
     4801 ggcacactat tatcgcgtga acaatactca gaactgttaa accaattatc aaatatcttt
     4861 gtttaatttt gtgaaaaatg ctttgagtag aaaccgctgc agaatataca tctgcaaatg
     4921 cattgcttgt ctcatgtaaa ataaacatta acaaaattaa tccaaagaat atggattgga
     4981 ttgcagcgac cacaccaata atatcgctta taccgagtat ccatccgcca aaataaaaca
     5041 agatgtttgt tatcacaaag cctaacaaag gtaccaaaga aggatgctct gctctccttt
     5101 gcaaatcgac tgtaatctga cacatgtggc atccaagatt gttgttgctg ctattgcttg
     5161 ataataaaat atctgtagta ttgctgaaga aacaataaga aataaaatga atgaattaat
     5221 gaatgaatta atgaatgaat gaaatttgac caacatgatt tgatatattt gtaaatatta
     5281 tctaacggaa aaaaattaac gcctcatgat gtatctagca aaacagatgg ttagaaaata
     5341 accacaaggg atattaaagt gaggtgctat aatagatatc gcagcagtag ttaaagccaa
     5401 ggtaagaccc aaggaaaagt caagaaagcc aaaacaagaa tattttatgg tatgcgacta
     5461 ttgtttttgg tgcgcctcat catacatagt aaatggcaat tacaatcata attttgtttc
     5521 taaatgccct aattgcaaac aagagaaagt gcaatctctc ccaatttgaa cctacaaaat
     5581 ttaaaggttt gattaacatg tttcgcttac attaacccaa tttatgcctg caaactacta
     5641 actttgccaa ctctagtact tctatgcccg atccaggaag taagatgacg ttatataaaa
     5701 tgaaaagcag attaacctat aatataggtt tggtaaggtc ttatggttgg tgttattaaa
     5761 agtataatat atagcatact ctaatataga gagaaagaga aaaataaaaa atgacttgta
     5821 aaggcatatg tatacgtcat aaggcacaaa aaccaagtgg ttctggtaga tatgccactg
     5881 gtcagaaacg ctgccaggtg tgtgagctat tcatgcgatg ggatggattt tggtgccctt
     5941 gttgtggtta cagattacga acaagaccgc gtaatctaaa atacaaggca aagttaaaag
     6001 caaggaagga aatagaagaa gctaaaatac tattatctgt acgcaacggt aagagtacta
     6061 ctactcaaaa ataatagcag aataatatca tatatataac tatatatcat atttatctat
     6121 aaatggacta acagtacatc agctattggc gttcaaatgc ttaggctcgc ttgagatgtt
     6181 ttgcaattgt ggatggatgg aaagatttgt cgactgctag tgttaaggag acaatgttag
     6241 catctaacaa cgattaataa attatgtat
//
LOCUS       DASQSJ010000095         2313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_363561, whole genome shotgun sequence.
ACCESSION   DASQSJ010000095 DASQSJ010000000
VERSION     DASQSJ010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363561"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            315..782
                     /locus_tag="VE223_02020"
     CDS             315..782
                     /locus_tag="VE223_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HZC20397.1"
                     /translation="MKEQRYKNPIPTVDTIIQKGSQILLVKRKKEPFKGLFALPGGFV
                     NEGERVEDAAKREAKEETSLDIELVDILGVYSEPNRDPRGHIMSTVFIGKISPNNKVD
                     ALAQDDAAKIEWINLEEVNNAHFAFDHQKIISDYEKWKRSGGTFWSSRASLLL"
     gene            complement(1116..1721)
                     /locus_tag="VE223_02025"
     CDS             complement(1116..1721)
                     /locus_tag="VE223_02025"
                     /inference="COORDINATES: protein motif:HMM:NF024905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HZC20398.1"
                     /translation="MLWALFGVEIHRFALSHRKIQLSGSESAAITIEEQQQQPSTPRL
                     AALRRSALPIGIISALGYTVGLVLGLPRDFWTVVPIILAIRPASSTLTMTFTSMMIIG
                     TIAGALITTVITLETNNDYLLLALLFSFAVVVFATVGVSITLTQIFLVPFIIILLNLY
                     YPGQWYLPFIRILNVAIGAAIAVAVVYLLSVLTNSRLTFRK"
     gene            complement(1783..2214)
                     /locus_tag="VE223_02030"
     CDS             complement(1783..2214)
                     /locus_tag="VE223_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20399.1"
                     /translation="MHAVPTHAVKNTAWMSRFFKDIIHLDKSSFSLTAGLRAAAFIIA
                     PIILAFVIQQPALFLAAIGAIVLTATAKMLPTIPSWILLLACFTDAASFGLGTLAATT
                     GHLFSPVLLGIAVFAALAVWANTKWAAVGMVCIRQSFSLLE"
BASE COUNT          741 a          427 c          458 g          687 t
ORIGIN      
        1 tttattgtat aactctataa cttgcctttc tctatcctta taattattat tattaatact
       61 tgacatatgt ttgtcttctg cagctactat tagatagaac acagttggtt atagcttttg
      121 ttaccttgat accaggtgat acgtcattgc taccctgatt ccacctgata ccatgagcaa
      181 aatagcacgc tcaataatga taacaacaac agcttaacag gggtacccta tagtatatct
      241 tatacaacaa gttcctcttc ctaacctaat acaactatta ttcgcttttt atataagatc
      301 caatacttgt atatatgaaa gaacaacgtt ataaaaatcc aataccgact gtagatacta
      361 ttattcaaaa gggttctcaa attctgctag ttaaaagaaa aaaagagcca ttcaaaggtc
      421 ttttcgctct tcctggtgga tttgtaaatg agggagaacg agtagaagat gcagcgaaac
      481 gagaagctaa ggaggaaaca tctttggata tagaactagt tgatatctta ggtgtttatt
      541 cggagcctaa tagagatcca agaggacata tcatgtcgac tgtctttatt ggaaagattt
      601 ctcccaataa taaagtcgac gcattagcgc aagatgacgc agctaaaata gaatggataa
      661 atttggaaga agtgaataat gcccactttg cattcgatca tcaaaaaatt atatcggatt
      721 acgaaaagtg gaaacggtcg ggtggaacct tttggtcttc aagagcgtca ctgctacttt
      781 gatctgaaca catttagcat aagttttgtg ttctactaat ggtgcagaga ttctataagc
      841 agtattggaa atattggtag taacatagaa taaaaaatac tcgactggtt aaacctcaaa
      901 acaaattgct gtagttggcg cctttcattt aagaggccat ctatgtcatt ttgtaaagta
      961 tcaacattct ggtgatgcat gttctcggca tgcttaactc ctgtattttt gtatgtcctg
     1021 cataagcggt ttggagatta taagatcttt atcatcaata ccttcattat tgtatctatt
     1081 gcttgagtca ctagtacaag agtattttcg tatccctatt tcctgaaagt aagtcttgaa
     1141 ttggtcaaaa cactgagcag ataaacaaca gcgactgcaa ttgctgctcc aattgctaca
     1201 ttgagaattc gaataaatgg aagataccat tgaccaggat aatagagatt gagtaggatt
     1261 ataataaatg gtactaagaa tatttgggta agggtaatac ttactcctac cgttgcaaat
     1321 acaacaactg caaaagagaa cagcaatgct agaagcaaat aatcattatt ggtctcaagg
     1381 gttatcactg ttgttatcaa tgcacctgct atggttccga ttatcatcat tgaagtaaaa
     1441 gtcattgtta gagtagagct ggctggccta atcgctagaa ttatcggtac aacagtccaa
     1501 aaatctctcg gaagtcctag tacaagtcca acagtataac caagagcaga tataatccct
     1561 atcggaagag cacttcttct tagtgccgct aatcgtggag tcgatggttg ttgttgttgt
     1621 tcttcaattg ttattgctgc actttctgac cctgacagtt gtatttttct gtgtgataga
     1681 gcaaaacgat gaatctctac accaaacagc gcccataaca ttccgataag agaaaaaaaa
     1741 gtgtcctcag acctgctgat tgtattgaaa aaccgggtaa acctactcca atagcgaaaa
     1801 tgattgccgt atacatacca taccaacagc cgcccacttt gtattggccc aaacggcaag
     1861 agctgcaaat acagcaattc caagtaagac aggggagaag agatggcctg tagtagcggc
     1921 aagagttcca agtccaaagc tcgctgcgtc tgtgaagcaa gctagaagaa gaatccatga
     1981 tggtatggta gggagcattt ttgcagttgc ggtaagaaca atagccccaa tggctgctaa
     2041 gaacaaggct ggttgttgaa ttacaaaagc taggattatt ggtgcaatga taaaggctgc
     2101 tgctctgagt cccgctgtaa ggctaaatga agatttgtct aggtgtatga tatctttgaa
     2161 gaatcggctc atccatgcag tattctttac agcatgggtt ggcacagcat gcataagtcc
     2221 catatgtcat ataatgtcat atatccatat actatattgc tctctatgtc attcattgtt
     2281 agtgtagacg aaagtctcaa tgcgctgatg cca
//
LOCUS       DASQSJ010000096         2984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_244417, whole genome shotgun sequence.
ACCESSION   DASQSJ010000096 DASQSJ010000000
VERSION     DASQSJ010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244417"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VE223_02035"
     CDS             <1..454
                     /locus_tag="VE223_02035"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HZC20400.1"
                     /translation="VCIGYCESPLSFFMRRWRSGTIGALKMGTYHGLYCLGCCWPYFL
                     LMIALGWMNLLWMGLFACIIFGEKMWSKGIWIARIAGIGLMTLGLFAIILAPNAHSLL
                     GVGSDDDDGGGKVNNHDNNNYRSDKNGNTNMNSNMNMNMKVNMKTMKM"
     gene            767..1330
                     /locus_tag="VE223_02040"
     CDS             767..1330
                     /locus_tag="VE223_02040"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HZC20401.1"
                     /translation="MKNAPDGWKVNSVKKVYSNDFIELYEDILDLNGIEKVYTRGVRK
                     DYSTVVPFISDEEILVIKSYRHLVDSILIEIPSGYIDKGESPKEAAIRELKEETGYSA
                     KDVISIGDYTLDYSMFEQRGNLFVAYDLVKVGNQSLGIMEKIDVESISIKKIKRLLLE
                     GKILNAASIVALYRALDFQEHSNMKRK"
     gene            complement(1439..2278)
                     /locus_tag="VE223_02045"
     CDS             complement(1439..2278)
                     /locus_tag="VE223_02045"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HZC20402.1"
                     /translation="MKYNIIKPLKSGTFGKVYEIQGDDNTRYALKELKEFDITNKQHF
                     EREIKILSQLNHPNIVKIFQWNMGGEPPNFTSYYIMEYLSGGSLREHMDERFRSHERY
                     VFERKWTINRIILPTCNALAQAHSSNLFHRDLKPDNIMYTDPSRSEIKITDWGLGKGI
                     NRKSLALSATTSTDAEEIGGTPGYCSPEQWFALDNLVDGRTDIFSLGIIFYEMMTRTR
                     PPAYDDKMNRPAVDPPSRYHPTISRKLDRCILKMIDLKPQNRQQSIWDLIFELETMPD
                     NYL"
     gene            complement(2586..2861)
                     /locus_tag="VE223_02050"
     CDS             complement(2586..2861)
                     /locus_tag="VE223_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20403.1"
                     /translation="MSQDYDPQICHTICDIYVCRNCPDGWWPLQHFLPLAMPAGKRMV
                     QIIVLMLQLRHAEVTSNANSTANKSGKDHLTTASCVDYKSCPVIGQS"
BASE COUNT          961 a          474 c          583 g          966 t
ORIGIN      
        1 agtatgtatt ggatattgtg aatccccgtt aagcttcttt atgagaaggt ggagaagtgg
       61 aacaattggt gctctcaaga tgggtacata tcatggacta tattgtcttg gttgctgttg
      121 gccatacttt ctattaatga tagctttggg ttggatgaat ttgctttgga tggggctatt
      181 tgcatgtata atttttggag aaaagatgtg gtccaaagga atatggattg ctaggatagc
      241 tggaatcggg ttgatgacac taggactatt tgcgataata ctcgcaccaa acgctcatag
      301 tttgcttggt gttggtagtg atgatgatga tggtggtggt aaagtcaata atcacgacaa
      361 caataattac agaagcgaca agaatggtaa caccaatatg aatagtaaca tgaatatgaa
      421 tatgaaagta aatatgaaaa cgatgaagat gtaatggtat tgaagatctc cgattcttca
      481 tgatagctgc acctgaatag tgctggaatt attggtataa gccataaaag gattgtaata
      541 tctaaaattt acgtcgtaaa atcccaaaag acgctttgaa ttgcggtgcc gttagatatt
      601 actaccatgt aaacacgact tgcactcttc ttcctttcgc tctgcttgtc tcctcgtcat
      661 acctatgcag cttttgacaa gccaacattt ttctaaatat attggtagtt ccttgtccaa
      721 aacataaaaa aagcaaatga tctttcaaca taaaagacca caattgttga agaatgctcc
      781 tgatggctgg aaagtcaatt cagtaaaaaa agtgtattct aatgatttta ttgaattata
      841 tgaagacata cttgatttaa acggaataga aaaagtatac acaagaggag tgagaaagga
      901 ctattcaaca gtagtcccat ttatttctga tgaagaaatt cttgtaatca aaagttatag
      961 acatttagta gattcaatct taattgaaat accatcagga tatatagata aaggagaaag
     1021 tcctaaagaa gcagcaataa gggagcttaa agaggaaaca gggtattctg caaaggatgt
     1081 gatatcaata ggagattata ctcttgatta ttcgatgttt gagcagaggg gaaatctctt
     1141 tgttgcatat gatttagtga aagtgggaaa tcaatcactt ggaataatgg aaaaaataga
     1201 tgttgaaagt ataagtataa aaaaaattaa gcgtcttctt ttagaaggta agatattaaa
     1261 tgcagcatct attgttgcat tatatagagc tcttgatttt caagagcact caaatatgaa
     1321 acgaaaatga gaataattag acatttagct ttgattaata ttatgcatca atttactaaa
     1381 gtacaaaaag ggctattaca ccatttagat taaaagtaat acatttagtt ccaattaatt
     1441 acaagtaatt atcaggcatg gtttcaagtt caaaaatcaa atcccatata gattgttgcc
     1501 tattttgagg cttgagatca atcatcttca atatgcaacg gtctagcttt cttgaaattg
     1561 taggatgata ccttgaagga gggtcaactg caggcctatt cattttatcg tcatatgctg
     1621 gaggtcttgt acgcgtcatc atttcgtaga atattattcc aagagaaaaa atgtctgtac
     1681 gaccgtcaac tagattatct aatgcaaacc actgctctgg agaacaatat ccaggtgttc
     1741 cccctatctc ctctgcatct gtcgacgtag tagcactcaa tgctagagat tttctattga
     1801 tacctttccc aagtccccaa tctgtaattt ttatttcaga tctactagga tctgtataca
     1861 tgatattgtc tggctttaag tctctatgaa ataaattgga actgtgtgct tgagctaaag
     1921 cattacatgt aggtagaatg attctattga tggtccattt cctctcaaaa acatatcttt
     1981 catggctacg aaatctttca tccatatgtt ctctgagaga accaccgctt agatactcca
     2041 ttatatagta ggaagtaaaa ttaggtggct ctcctcccat attccactgg aatattttta
     2101 caatatttgg atgatttaat tgagaaagta ttttgatttc tctttcaaag tgctgcttat
     2161 tagttatatc aaactctttg agttctttta atgcatatct tgtgttgtca tctccttgga
     2221 tctcatagac ctttccaaaa gtacctgact tgagtggttt tataatgttg tatttcaact
     2281 caaatatgga taagtgaatt cataatatta tgcttgttta tttaagtaaa gcaagtaagc
     2341 ttgtttactt acttgctctg agtctcaagc gtaaaagata tgaggttaat ttgatgaatg
     2401 atagattttg cataagtgtt aacatcagac tgtaacatcc aagagttttg ataagtctgc
     2461 aaccattgta actaatggcc caaatacaga agcaactttt agcatactga caagctaaag
     2521 agatatgata catataatgc atatgctgca gacaagatgg ccggtgatac ttggaccagg
     2581 tatcgtcaag actgtcctat aacaggacaa gatttgtagt cgacgcagga tgctgtggtt
     2641 aaatgatctt ttccgctctt gtttgctgta ctattggcat tagatgtgac ttctgcatgc
     2701 ctcagctgca gcattagtac gatgatttga accatgcgtt tccctgcagg catggcaagt
     2761 ggcaagaagt gttgcaatgg ccaccacccg tctgggcagt tccggcagac atagatgtcg
     2821 caaatggtgt gacagatttg gggatcataa tcttgtgaca tttcaagtcc agattataaa
     2881 ctatcttgct tttggataaa cattacagca ccaagaaatg cttcactagc tatatttagt
     2941 atactaaata tagttaacta atgtatgttg tattagctgg ttta
//
LOCUS       DASQSJ010000097         2266 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_489517, whole genome shotgun sequence.
ACCESSION   DASQSJ010000097 DASQSJ010000000
VERSION     DASQSJ010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_489517"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..989)
                     /locus_tag="VE223_02055"
     CDS             complement(<1..989)
                     /locus_tag="VE223_02055"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC20404.1"
                     /translation="MDDLKKEKSKDSRETPRKQQQKQPPSSSSSSSKSELPETSRKIR
                     ASTWITLAILGSTILITMYGETMLLPAIRDVIRDFHISYSTTSWILTAYLISGAVMTP
                     IAGKLSDIYGRKKLVLIILIIYIIGISIGALSTNISVLLVARVIQGVGISMFPIAFGI
                     IRDQFPIEKLAIGVGVFSSMFAAGSVVGLAVGGSIIQNFGWHTTFLSIVPIAIILWII
                     INRFIHEDNKAELEQKGGSLMQDGSIKPHTEHDLNLHRVVTSRRSIDVKGAITLAVTI
                     TSFLLTLTYIGNNGVSTSNLDVSSTQIAIILLAFLSIGSLALFVTIERKASSP"
     gene            1442..1573
                     /locus_tag="VE223_02060"
     CDS             1442..1573
                     /locus_tag="VE223_02060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20405.1"
                     /translation="MRQKQFWDLLALIRQFMAVLFRKKVRKCHERLREERTKDMQAD"
     gene            1824..>2266
                     /locus_tag="VE223_02065"
     CDS             1824..>2266
                     /locus_tag="VE223_02065"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HZC20406.1"
                     /translation="MKAIIFDMDGVLIDAMPFHAEAMRIAIKEETNHDIDKKIVYLLE
                     GMPGAQLVKEIFKREKIDKNIDDNLAEKISKRKKEVFKEIQKSKPIEGARELVNDLKS
                     CSCLKAVASGSAKQEIETTLEENIGLKNFDIIVTGDDLGGEGKPDP"
BASE COUNT          750 a          371 c          435 g          710 t
ORIGIN      
        1 aatggtgatg atgcttttct ttctatggta acaaataagg ctaacgatcc aattgataag
       61 aaggctaaca aaattattgc aatctgtgta gaagacacat caaggttact agtactgaca
      121 ccgttatttc caatatatgt aagtgtaagt agaaatgagg ttattgtaac agccaaggtt
      181 atggcaccct ttacatcaat gcttcttcta ctggtaacaa ctctgtgtaa attcaaatca
      241 tgctctgtat ggggcttgat actaccatct tgcatcaaac tgcctccttt ttgttctaat
      301 tcggctttat tatcttcgtg aataaatcta ttgattataa tccaaaggat aatggcaata
      361 ggtactatag aaagaaatgt agtatgccac ccaaagttct ggattatgct tccacctact
      421 gctaaaccca ctaccgatcc tgcagcaaac attgaactga atacccctac acctattgca
      481 agcttctcaa tcggaaattg atctcttata attccaaatg ctattggaaa catggatata
      541 ccaactcctt ggatgactct ggcaacaagc agaacagata tgttagtgga gagtgctcct
      601 attgaaattc ctattatgta aattattagt attattagca ccaatttctt ccttccatag
      661 atgtcagata actttccagc aattggagtc attacagcac ctgagataag gtatgccgta
      721 agtatccaag atgtagtact atatgaaata tgaaaatctc taattacatc acgaatagct
      781 ggtaataaca tagtctcacc gtacattgta attagaatag tggatcctag gatcgcaagt
      841 gttatccatg tagaagctcg aatttttcta gaagtttcgg gtaattctga ttttgatgat
      901 gatgatgatg atgatggcgg ttgtttctgc tgttgttttc taggggtttc tctgctatcc
      961 tttgattttt ctttctttaa atcatccatt acaaccactt accaatgtct ttcagagcat
     1021 ggatttcatc tttttctttc ttatatctaa ctttctccta ttgatgtaac tgactcaaaa
     1081 taatttacag tttttgttga ttaatggatt caatatctcc tacgtataag gatcgtatgg
     1141 attgtaatca tatgctatca gtaatatgct gttaccattg gatgtattgc ggcatcttgg
     1201 ataataataa tgaatgctga tagtttttat ggatactctt gttagagctg agattctata
     1261 agattcctag aacccgctta ggttaacgga gcccttgcga tcaaagcaat ggacaaaatt
     1321 atgacagatg aagaccttca tagacaagat cttataatcc ccaaactgct tgcaggatac
     1381 tgacatgtac cggagggatg aacggaaata tgaattatta tgaatagaga agtgatgctt
     1441 gatgcggcag aaacagtttt gggatctttt agctttgatc agacagttta tggcagtttt
     1501 atttagaaag aaggtaagga aatgccatga gagattaagg gaagaaagga cgaaagacat
     1561 gcaggctgac tgacccaatg gaaaaacatg actatatggc tatgaggttc tctatagcga
     1621 ttggtaatcc agtttatggc aatgattatt aacaactagc ttgatctttt tatagatcct
     1681 atgatgctga tgattgtcga caaccattct cttcctctct ccataacgcg cgaacacaaa
     1741 cttccggctt gtattggaag taataacaat aataataaca ataatacttt ctatagccca
     1801 taattattac atgatgatat tttatgaagg cgataatctt cgatatggat ggagttctaa
     1861 tagatgcaat gccatttcat gctgaagcta tgagaattgc aattaaggaa gagacaaatc
     1921 atgacattga caaaaaaata gtttatttac ttgaaggaat gcctggagcg caactggtaa
     1981 aagagatttt caaaagggaa aaaattgata aaaatataga cgataatctt gcagaaaaaa
     2041 ttagcaaaag aaagaaggag gtattcaaag agattcagaa gtcaaagcct attgaaggag
     2101 caagagaact ggttaatgat ttgaaaagtt gcagttgctt aaaagcggtt gctagtggtt
     2161 ctgctaaaca agaaatcgaa actacacttg aagaaaacat aggtttaaag aattttgata
     2221 taatagttac tggtgatgat ttaggaggag aaggaaaacc tgatcc
//
LOCUS       DASQSJ010000098         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_211027, whole genome shotgun sequence.
ACCESSION   DASQSJ010000098 DASQSJ010000000
VERSION     DASQSJ010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211027"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            403..651
                     /locus_tag="VE223_02070"
     CDS             403..651
                     /locus_tag="VE223_02070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20407.1"
                     /translation="MNSTDRHETTGLDNSTFNILIALGKEAQFLYSTIDTYRSDAEKA
                     NRSDLVDMWNKIKEDRQRHMQMLRGALEQEAKGEKLRK"
     gene            complement(743..1117)
                     /locus_tag="VE223_02075"
     CDS             complement(743..1117)
                     /locus_tag="VE223_02075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20408.1"
                     /translation="MTIHQSTSLQKDEHTPEDKQVVIKEWLEQIFMDKLRKASIRAGR
                     KGKPYILFRNIVEESEDAVKEEIATVIDKYVVTQIFTYGGFLPSSFQKQNVYTLDKFA
                     RVILKRNRNLLLQCLENLDTDT"
     gene            1278..>2177
                     /locus_tag="VE223_02080"
     CDS             1278..>2177
                     /locus_tag="VE223_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HZC20409.1"
                     /translation="MAFESLGEYVEILDRAGQLKRVKTKVSANLEVAEIMRRLMYSGE
                     QPAVLFENVQDSTIPILGNAFGTLKRLQIALDCQNFNDIGERIVELTRLKIPSGILNR
                     LKMLPRLSEIADYSPKYVDTGPVTQIIEKNNASFNSLPVLKSFMGDAGKFITFGLTVT
                     KHPQTGVRNIGVYRIQVINERKAIMHWQIHKRGAQHYQIMKGTNKPIEVAVIVGADPA
                     TVFSGVAPVPEGLDKFFFSGITRKKGTKLIKCSTVDLEVPANAEIVLEGYVDPNDIRM
                     EGPFGDHTGYYTPPEPYPTFTLTA"
BASE COUNT          709 a          414 c          418 g          636 t
ORIGIN      
        1 ccggtcggaa atttcgacag tggtttatga acgtctgcgt gctagcctag atcgttcgaa
       61 atataatatt ttctgatgac gatattaact atcgccttat actttcttgg tttatcatag
      121 agaagcactg caaaagcttt accaaggtta taaaataagt cttctgctat ctggaaatgg
      181 atacaagata aacctgaaag aacctccaaa aggagaaaag tttccgggtc ccatatagat
      241 gatccaacag caatctacca acaaatcttc gatatgacga tgttagctat tgtttgttct
      301 tttgtttctc tcctggggaa gagaatctag caatcatctc tagaagagaa ttatagatca
      361 ataaaatgca actcttttta gagagattgt atcgacaatg gcatgaattc aacagatagg
      421 cacgaaacaa caggattaga taattctaca tttaacatat tgattgctct tggtaaagaa
      481 gcacagtttc tatactcgac aatcgatacg tacaggtctg atgctgagaa agcaaataga
      541 tcagatttag tagacatgtg gaataagata aaggaggaca ggcaaagaca tatgcaaatg
      601 ctaagaggag ctctcgaaca ggaagcgaag ggtgaaaagt tacgcaaatg atctccaact
      661 ggaactgaaa aaatcctaac cagattcaaa atattttagg cgatattttt taacctaccc
      721 tctattttat taacacagca atctatgtat ctgtgtctag attttcaaga cattgtaaaa
      781 gcaagtttcg atttctcttc aaaatcaccc ttgcaaactt atcaagtgta tatacatttt
      841 gtttttgaaa gctagatgga agaaatccgc cataagtaaa gatctgggtc actacgtatt
      901 tgtcaatcac cgtagctatt tcttccttta ccgcatcttc gctctcttct acaatattcc
      961 tgaataatat atagggctta ccttttcgac ctgccctgat cgaagccttc cgtaacttgt
     1021 ccatgaatat ttgttctaac cattctttga ttactacttg tttatcttca ggcgtatgtt
     1081 catctttctg aagacttgta ctctgatgga tcgtcaaatg tcatagttaa gatggatttc
     1141 taattaaacc cacacgacaa gagattttaa catttctgtt aatgaaatta accgacggga
     1201 caacataaaa gtacccaact agattaatcg tatatggctc ggcaaagctt atcttacctt
     1261 tgtagattat tccctttatg gcatttgaga gccttgggga atatgttgaa atcctagata
     1321 gggcaggaca gctaaaaaga gtaaaaacaa aggtaagcgc caaccttgag gtagcagaaa
     1381 ttatgaggcg ccttatgtat tctggagaac aacctgctgt attattcgag aatgtacaag
     1441 attcgacgat acctatccta ggcaacgctt tcggaacgct taagagattg caaattgcac
     1501 tcgattgtca gaattttaat gacataggcg aaagaattgt agaattaacg aggttgaaaa
     1561 ttccttctgg tatactaaac aggcttaaaa tgctacctag gttatcagaa attgctgatt
     1621 acagcccaaa atatgttgac actggcccgg tcactcaaat aattgaaaag aacaatgcca
     1681 gctttaactc gttgccagtg ctcaagtcat ttatggggga tgctggaaaa ttcattacat
     1741 ttggactaac agttaccaaa catcctcaaa caggagttag aaatattgga gtttatagga
     1801 tccaagttat caatgaaagg aaagctataa tgcattggca gatccacaaa cgtggagcgc
     1861 agcattacca aataatgaaa gggacaaaca aacctataga agtcgcagtg atcgtaggag
     1921 cagatcctgc aacggttttc agtggggttg ctcctgttcc tgagggactt gataaattct
     1981 tcttctctgg aataacccga aaaaaaggta caaaacttat aaagtgttca actgtggacc
     2041 ttgaagtacc agcaaatgcg gaaattgttc tagaaggtta tgttgatccg aacgacatcc
     2101 gtatggaagg tccttttggc gatcacaccg gttattatac tcctcctgaa ccttatccta
     2161 cctttaccct taccgct
//
LOCUS       DASQSJ010000099         3757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_45307, whole genome shotgun sequence.
ACCESSION   DASQSJ010000099 DASQSJ010000000
VERSION     DASQSJ010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45307"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..348)
                     /locus_tag="VE223_02085"
     CDS             complement(<1..348)
                     /locus_tag="VE223_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HZC20410.1"
                     /translation="MKGLLYVELTARGPRRDAHSSLAVLIENPAWRLVRALNTMRDKK
                     GKILIKDWYKDVIDFTPEELDIISNEPFDEQGFKKEYGINKFLNDMRGLEAIKAYVGM
                     PTCNIAGLASGYTN"
     gene            complement(345..971)
                     /locus_tag="VE223_02090"
     CDS             complement(345..971)
                     /locus_tag="VE223_02090"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZC20411.1"
                     /translation="MTMLNEIINKTIDLEMEGLVSDLQTLIQCPSVSAKREGLVECAK
                     ILSDIMCKAGIKTEILYLYSNNSGSDDKKDIPPPVVYGEVISKSNPNGPTILFYNHYD
                     VQPVDPIDLWESDPFSGKVEGNYVFGRGSADDKGELITRIKAVEYYLKNTGDVPCNVK
                     FIIEGEEEIGSIHIEDYLETYRQKLDCDVEYGSSVILMLMIGLLSALA"
     gene            1150..3273
                     /locus_tag="VE223_02095"
     CDS             1150..3273
                     /locus_tag="VE223_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HZC20412.1"
                     /translation="MSSDATDSKRIFLAPRSIAVIGASEKAGVGRAIFSNIINGYKGK
                     IYPITPSNPTVFGIDAYKSVLEVPENIDLAVVATPNRTIPSVMEEIGRKKIKGTIIVS
                     AGFKEVDEYGAKREKEVGAIGRKHGTRIIGPNCLGIMSLSEHNMMNATFLKITPKHGN
                     IALISQSGAICAATVEDAMAQGIGFSKVISMGNKVDMDENDVLELLAEDQETKVIVMY
                     LEDIHDGRRFMEIARRITREHKKPIIVQKAGRTPEGAKAAMSHTGALMGADEIYDALF
                     AQCGVIRVDTMQELFDLSTAFSKQPIPPIDSGVVIVSNAGGPAIISTDACSKFGLKMA
                     DVSTSREIITKIIPPHGSARNPIDIVGDADFNRFEKVLREILSNPNVGSVVTMCTPSA
                     TLDYNELARTIVKSSKDTGKTMLAALMGLAEGTENKEILSNGGIPHFMYAEPAIQSLH
                     SMYRFSGWLSNTLDEPKRFNVDREKVKKIFDKVREQGRPNLLEEEGYEVLSAYGFPTP
                     KSILATNEEECTKAAQQVGFPVVMKIASPDIIHKSDAGGVKVGMKNKDEVSAAFKTII
                     NSAKEYNTRAQIKGVLVQEMVKSAKEIILGAKQDPLFGPLIMFGIGGIYVEILKDVVF
                     RLAPIDQNEASTMVESIKAIRLLKGVRGEKPSDLKAVVDSLQRLSQLVVDFPEIKEFD
                     MNPLLVLEDGKGARAVDVRISLSTN"
     gene            complement(3282..>3757)
                     /locus_tag="VE223_02100"
     CDS             complement(3282..>3757)
                     /locus_tag="VE223_02100"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HZC20413.1"
                     /translation="VANSNQPGNTPAASSLNTATPSSPSPSITKATTLTGKVGFVPIQ
                     SLVGMPAYNSEAILVGRVKEIGLRKSSEGIVQIGIRIEREFGDNNDNNNSVEDEVLWN
                     NISKIGDIVLLSEKAKLGRSDDISSSTKETVNCPSCGYQNQENASFCEECGKKLV"
BASE COUNT         1206 a          725 c          736 g         1090 t
ORIGIN      
        1 gttggtatag cctgacgcca gaccggcaat attgcatgta ggcattccaa cgtatgcttt
       61 gatagcttcc aaccctctca tatcatttag aaatttattt atgccatatt cttttttaaa
      121 tccctgttcg tcaaatggtt cattagatat gatgtctagc tcttcaggag taaaatctat
      181 tacgtccttg taccaatctt tgattaatat ttttcccttt ttgtctctca tagtattcaa
      241 agctcgtaca aggcgccacg cagggttttc gatcaagact gcgagactag aatgggcatc
      301 ccttcttgga cctctagcag ttaattccac gtaaagcagg cctttcatgc caaggctgat
      361 aataggccta tcatcagcat caatataacc gaactcccat attccacgtc gcaatctagc
      421 ttttgtctat acgtctcaag gtaatcctca atatgtatac tcccaatttc ctcctctcct
      481 tctataataa atttaacatt acatggaacg tcaccagtat tcttcagata atattccact
      541 gccttgattc tagtaattaa ctcgccttta tcatcagcag atccacgtcc aaaaacatag
      601 ttgccttcaa ctttgccgct gaatggatct gattcccata aatctatagg atctactggc
      661 tgaacatcgt aatgattata aaacaaaatg gtcggtccat tcgggtttga tttagatatg
      721 acttcaccgt aaactactgg cggaggaatg tcttttttat catcacttcc tgaattatta
      781 ctgtaaagat acaatatttc agttttaatt cccgctttac acataatatc agaaagaatt
      841 tttgcacact caacaagtcc ctctcttttt gcagaaacac ttgggcattg tatcaaagtt
      901 tgaaggtcag aaacaagacc ttccatctca aggtctatgg tcttattaat aatctcattc
      961 aacatcgtca tattttttat attaaaatta aaaggttact atccagtcat agtgcgatct
     1021 taacattctc caactgtccg gtcaatattg taaaactacc ttatccaaaa tcagatttaa
     1081 gagccaacta agcaatacca agaaaaacag aatgcattta tagcatcctc tcataactct
     1141 atttcttaca tgtcctccga tgcgactgat tcaaagagga ttttccttgc tccgcgatct
     1201 attgcagtta taggagcatc tgaaaaggcc ggtgttggta gagcaatttt ttctaatatc
     1261 ataaacggtt acaaaggaaa aatatatcca atcactcctt ctaatcccac tgtttttgga
     1321 attgatgcat acaagagtgt tcttgaagtt cctgaaaata tcgatctggc agtggttgca
     1381 acaccaaata gaaccatacc tagtgtgatg gaagaaatag ggaggaaaaa aattaaaggt
     1441 acgattatcg tttcagctgg atttaaggaa gtcgatgagt atggcgccaa gcgcgaaaaa
     1501 gaagttggag ccatcggcag aaaacatggt accaggataa taggtccaaa ttgtcttggg
     1561 attatgagtt tatctgaaca caacatgatg aatgcgacct ttctaaaaat tacaccaaaa
     1621 cacggcaaca ttgcattgat atctcaaagc ggtgcaattt gtgcagccac agtagaagat
     1681 gctatggctc aaggcatagg attttcaaaa gtgattagta tgggtaacaa agttgatatg
     1741 gatgaaaatg atgttcttga attattagcc gaagatcaag agacaaaagt tattgtcatg
     1801 tatcttgaag atattcatga tggcagacgg tttatggaaa ttgctaggag aattacaagg
     1861 gaacataaga aaccaatcat agtgcagaaa gcaggaagaa cacctgaagg cgccaaggca
     1921 gcgatgtcac atactggggc actaatgggt gcagatgaaa tttatgatgc attgtttgct
     1981 caatgtggtg taatcagagt agatacaatg caagagctat tcgatctttc cacggccttt
     2041 tcaaaacaac ctataccgcc aattgatagc ggagttgtaa tagtatcaaa tgccggagga
     2101 ccagctatta tctcaactga cgcctgttca aaatttggat taaaaatggc tgatgtatcc
     2161 acatcaagag aaataataac caaaataata ccgccccatg gctcggctag aaatcctata
     2221 gatatagtgg gcgatgctga cttcaaccgc tttgaaaaag tgcttagaga gatattatca
     2281 aacccgaatg tcgggtcagt ggtaacaatg tgtacccctt ctgctacact cgattacaat
     2341 gagttagcta gaaccattgt caagtcatct aaagacactg gcaagactat gcttgctgcc
     2401 ttaatgggac tcgctgaagg tactgaaaac aaagagatcc tctcaaacgg agggatacca
     2461 cattttatgt atgcagaacc tgcaatacaa agtctgcatt caatgtatcg cttcagtgga
     2521 tggttatcaa atactttaga tgaaccaaaa aggtttaatg tagacagaga aaaggtaaaa
     2581 aaaatttttg ataaagtcag agaacaaggt agaccaaatt tattagaaga agaaggttac
     2641 gaggttctta gtgcatatgg cttccctact ccaaaaagca tactggcaac aaatgaagaa
     2701 gagtgcacaa aggctgcaca gcaagtaggt tttccagttg tcatgaagat tgcatcacct
     2761 gatattatac acaagtcaga tgcaggagga gttaaagttg gaatgaaaaa caaagatgaa
     2821 gtcagtgcag cgtttaaaac gataatcaat agtgccaaag aatataatac tcgtgcacag
     2881 ataaaaggag tccttgtaca agaaatggta aaatctgcca aggaaataat tctaggcgca
     2941 aaacaagatc cattatttgg gcctctcata atgtttggca ttggtggtat atacgttgag
     3001 atcctcaaag atgtagtttt tagattagcc ccgattgatc agaatgaggc atcaaccatg
     3061 gttgaatcaa taaaggccat tagattgttg aagggtgtga gaggagaaaa gccgtcagat
     3121 ttgaaagcag ttgtagatag tctccagcgg ctttcgcagt tagttgttga ttttccagag
     3181 attaaagaat tcgatatgaa cccactgctg gtgctagaag atggcaaagg agctcgtgca
     3241 gtagatgtta gaataagttt gagcactaac taattctaag cctatactaa tttctttccg
     3301 cattcttcac agaaagatgc attttcctga ttttgatagc cacatgaggg acaatttact
     3361 gtttctttgg ttgaagaaga gatgtcatct gatcttccta actttgcctt ctctgaaaga
     3421 agaactatat ctccaatctt agagatatta ttccacaaga cttcatcttc gacactgttg
     3481 ttattatcat tattatcacc aaactccctt tcaatcctga tgccgatttg tacaattccc
     3541 tcagaagact tgcgtaatcc aatttcctta actctaccaa ccaatattgc ttcactattg
     3601 taggcaggca ttccaacaag tgactgtatt ggaacgaaac caaccttgcc tgtcaacgtg
     3661 gtggctttag taatggaagg gcttggagat gatggagtag ctgtattaag ggaactggcg
     3721 gcaggagtat taccaggttg atttgaattc gcgactg
//
LOCUS       DASQSJ010000100         2248 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_449869, whole genome shotgun sequence.
ACCESSION   DASQSJ010000100 DASQSJ010000000
VERSION     DASQSJ010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449869"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            111..818
                     /locus_tag="VE223_02105"
     CDS             111..818
                     /locus_tag="VE223_02105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HZC20414.1"
                     /translation="MLKKIAQRLTPNQRKFIAEVIGTFIVVVFATGSVVIDAKLKGAL
                     GIPFIAFAPFVGVAIGVYAFGKISMAHFNPAVTIGFMITKHITKIQLIYYLAAEVIGA
                     LLGSLFIKYMIGNEANLGANAPNYSFPIPIIFGIEVLATALLMAVILTVVHTKGLRGF
                     SGIVIGGIVGLDIFFLGFISGASMNPARSLAPALLSGGATTNLWLYWTATFIGSSTIA
                     FIYRIKVACIKKTEFPN"
     gene            complement(1355..1768)
                     /locus_tag="VE223_02110"
     CDS             complement(1355..1768)
                     /locus_tag="VE223_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20415.1"
                     /translation="MIKFKSNVSHYKLMLQGHVSEKELALLSPLSFEQVCPTWARKLR
                     TGLDQQDLRTLAHDSKYCIVGEAWGYNGRHAGYYIAPLIPLIGCWSCVKLGREMGKIA
                     KLHGQSCTIHLHPIINHFLEHWNKKHKHITKNGHA"
     gene            complement(1834..>2248)
                     /locus_tag="VE223_02115"
     CDS             complement(1834..>2248)
                     /locus_tag="VE223_02115"
                     /inference="COORDINATES: protein motif:HMM:NF016246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HZC20416.1"
                     /translation="LIQYKHNMTIKLKSLRQSQEPSDGFRILITRFRPRYIKKENENW
                     DAWYRELAPSRQLWYNYFKSNKIDWSQYRERFIEEMRDNPKSIELIHWLSKFENHDNN
                     NNKNMTLICFCENEKNCHRSIVKELALNYYLRKQL"
BASE COUNT          664 a          391 c          425 g          768 t
ORIGIN      
        1 gaatttaata gaatggggta ttgaagatcc taaagacaag ccaatagaga agatgagaga
       61 aattagagat gatattgagc gaagggtaag gcagcttgca gcaaatcttc ttgttaaaga
      121 agatagccca aagattaaca cctaatcaaa ggaagtttat cgctgaggtt atcggaacat
      181 tcattgtagt tgtgtttgct actggttcag tagttattga tgccaaactg aaaggagcac
      241 taggaattcc atttattgca tttgcccctt ttgttggagt tgccattgga gtctatgctt
      301 ttggtaaaat atcaatggct cactttaatc ctgcagttac gataggtttt atgattacaa
      361 agcacattac aaagattcag ttaatctact atttagcagc agaagttatc ggtgctttgc
      421 ttggaagcct gtttataaaa tatatgatag gaaatgaggc aaatttaggc gcaaatgctc
      481 caaactattc attcccaatt ccaattatct ttggaataga ggttttagcc actgctttat
      541 tgatggctgt aattcttaca gttgttcata ccaaggggct gagaggcttt agtggcattg
      601 tcataggtgg catagttgga ttggatatat tctttttagg ttttatttca ggagcctcaa
      661 tgaatcctgc cagatctttg gcccctgctc tgctttctgg aggagctacg accaatttgt
      721 ggctttactg gactgccact tttattggaa gttctaccat tgcgttcatc tatagaatca
      781 aggttgcatg tataaagaag actgaatttc ctaactaata tggaattggc caaaccatga
      841 tttggatatt ttgacccaaa tactaagtga ctaaaataaa ttaggctcct atagccttca
      901 cttaggtgtg gaaccaaaga ctttattttt tttagaattt tcactggtca tatacattaa
      961 cgattttggc cttttctccc ttcttgttct aatgtaatga taacagaaaa tgtcaggata
     1021 gaaatgagat atcaggccgt atcagataac aaaagataaa gcttagcatg ttctaagtaa
     1081 tagtaatatc gagaccgcta atgtgtcagg tagtagatat aataacgatt atactgaaag
     1141 agaaggaaat aaattttgtt aaaactaatt gtcaagatca aatatttata ctcttataag
     1201 tatgaacttc tatatttcta tcaacgcaga tttgttctta tttgaccagt actaatgcca
     1261 atggatcttg ctgtatgaat ttgatgctag tttcttcatc agcaatcaca ccagcaacaa
     1321 aggttattga tgcatatagc caattttcat gtctttatgc atgaccattt ttggtaatgt
     1381 gtttgtgttt cttattccaa tgctcaagga aatgattaat tattggatga agatgaatgg
     1441 tacaggactg accatgcagt ttggcaattt tacccatttc tcggccaagt ttgacacaac
     1501 tccaacaccc tataagagga atcaaagggg cgatatagta acctgcatgc ctcccattat
     1561 aaccccatgc ttcacctaca atacaatatt ttgagtcatg ggcgagtgtc ctcagatctt
     1621 gctggtcgag tccagttctc agtttccttg cccatgtggg acatacctgc tcaaaggata
     1681 atggtgataa tagtgctaac tccttctccg atacgtgacc ttgtaacatt agcttataat
     1741 gagaaacatt tgatttaaat ttgatcattt gccatacaag attataagta cgtggctaat
     1801 agtaaatggt ctttcatatg ttaggtgtga tatctatagc tgcttccgca agtagtaatt
     1861 caatgcaagc tccttaacta tactccgatg gcagttcttt tcgttttcac agaagcagat
     1921 taatgtcatg ttcttgttgt tattattatc atggttttca aatttggata accagtgaat
     1981 caattcgata gattttggat tatccctcat ctcttcaata aatcgttctc tgtattgact
     2041 ccaatctatt ttattcgact taaagtagtt ataccatagt tgcctacttg gcgctaattc
     2101 cctataccat gcatcccaat tctcattttc tttttttata tatcttggtc taaagcgtgt
     2161 aatcaatatt cgaaagccgt cagatggttc ttgggattgc cgtaatgact tgagctttat
     2221 tgtcatattg tgcttgtact gtataaga
//
LOCUS       DASQSJ010000101         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_91738, whole genome shotgun sequence.
ACCESSION   DASQSJ010000101 DASQSJ010000000
VERSION     DASQSJ010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91738"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1782)
                     /locus_tag="VE223_02120"
     CDS             complement(<1..1782)
                     /locus_tag="VE223_02120"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HZC20417.1"
                     /translation="MKPNASVDVASELTKTSTGMTPHNSKIKVSYNRKAESEFFVDNS
                     ALAGFTGERILYMAVRELIENSLDSCESNHTLPYISLSLKLLDPVNDMWLVSCEDNGI
                     GVPPDKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTDHPLKVWTKSQDEG
                     SEHYFELRTDIGTNKPIILVRKVLKTNEQVIKADSGFKVQAVLRARLSPITKNRIYDY
                     ISQSSIVNPYAVLVFESDEGRVVFDRRTKMMPQPAKEVLPHPGDMDLKTLKKAILNFT
                     NQKTTLLGVLCNSFQKLSAEKAKEIITRSGVEMKAADKYNEHELIKVVNICKQTKFQV
                     PNTDHLSPIGEEILTAGMTSEYTIVINKQTHPAEHSQPQLSIKILKPSLTTYSSKICL
                     INNRPTIVECGIAYGGDISSFKLYRFANKIPLLYDEGSDVAREVVSEVEINKMGISKK
                     EVKEQFADPETKAGRVVELLPIHIFFHICSTKIPYKTAGKESIASEGDLKRYMKVCLA
                     DLYRKVSAQIRKELRIKEAESRLHLYKYYIPLIVNAISESIKVDPNRLSEAFTRIAER
                     HVRGEINYPIAERQDKITGERIDGEIHE"
     gene            2167..>2455
                     /locus_tag="VE223_02125"
     CDS             2167..>2455
                     /locus_tag="VE223_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HZC20418.1"
                     /translation="MDITDRLFLITRDPTEEIITKDELTYVLETVAYPKHYIGLELSG
                     KLHLGSLILTGFKINDFIKAQIHSTVFLADWHTYINNKLMGDWDKIKEVSKY"
BASE COUNT          715 a          475 c          424 g          841 t
ORIGIN      
        1 ttcatgtatc tccccgtcga ttctttctcc tgtaatttta tcctgtcttt ctgcaatagg
       61 gtagttgatc tctcctctga catgtcgttc tgcaatcctt gtaaatgctt cggaaagcct
      121 atttgggtca accttgattg actcggaaat tgcgttaact attaagggaa tgtaatattt
      181 ataaagatgt aatctacttt ctgcctcttt gattcgtaac tctttacgaa tctgtgcact
      241 taccttccta tatagatcag ctaaacatac cttcatgtat cgtttcaagt ctccttccga
      301 ggcaatactc tccttgcctg ccgtcttgta tggaattttt gtagaacaaa tatgaaaaaa
      361 aatatgaatc ggaagcagtt ctacgactcg accagccttc gtttcaggat ccgcaaattg
      421 ttctttaacc tctttttttg atattcccat cttgttaatc tctacctcgg aaactacttc
      481 ccttgccacg tccgaaccct catcgtataa taacgggatc ttgtttgcga atctatacag
      541 cttaaatgaa cttatatctc caccataagc aattccgcat tctacgatag ttggtctgtt
      601 attgatcaag catattttag atgagtaggt tgtcaacgat ggttttaata tcttgattga
      661 caactgtggc tgcgaatgtt ctgcaggatg tgtctgcttg tttataacaa tggtgtattc
      721 tgaggtcata cctgcagtca gaatttcttc tccaatcggg ctaagatgat cagtattagg
      781 tacctggaat ttagtctgct tgcatatatt aacaacttta attaactcat gttcattata
      841 tttgtcggct gccttcattt ctactccgga tctagtgata atttctttag ctttttcggc
      901 agatagcttt tgaaatgaat tacataatac acctaataga gttgtctttt gatttgtaaa
      961 attcaatatt gcttttttca gcgtcttcaa gtccatgtct cctggatgag gcaatacttc
     1021 ttttgcaggc tgtggcatca tctttgttcg cctatcaaag acaacccttc cttcatctga
     1081 ttcaaagact aatacagcat acggattgac aatactgctt tgactaatgt aatcataaat
     1141 cctatttttt gttatcggag ataaccgagc acgcaaaacg gcttgaactt tgaagccaga
     1201 gtcagccttt ataacttgtt cattggtttt cagtactttt ctgacaagga ttataggctt
     1261 atttgtgcca atatctgttc taagctcaaa atagtgttct gatccttcat cttgtgactt
     1321 tgtccatact ttgagtggat gatctgtgtc cttcgtcgaa aaggctgcga tcatttttaa
     1381 gccaacacca aataggccgc gttgttgttt ttccacatat tttcctgagg ttaagaaaga
     1441 gcaaactgca acagggactt tatcaggtgg aactccaata ccattatctt cgcaagaaac
     1501 aagccacata tcgttgactg ggtctaatag ctttaaagat aatgaaatat aaggtagggt
     1561 gtgattactt tcgcaagaat ctaatgaatt ttctatcaac tctctgacag ccatgtacag
     1621 tatccgctcg ccggtgaagc cggcaagagc agaattatca acgaagaatt ctgattctgc
     1681 tttcctatta taactgactt tgattttgct attgtgtgga gtcattcccg ttgatgtctt
     1741 cgttagttca gacgcaacat ccacactagc attaggtttc aaacgtcgaa actagttatg
     1801 taactcaatt taacttttta caatactcga tttagctctt taccgcaaat ttcttgacag
     1861 accaataaca agaatactaa atctcggaat cagcgaatgc aatattttgc ctagaatcat
     1921 tcacaaaaat gctgtggatc atatgtggtt actctagata tatatgtaaa gggttgcaaa
     1981 tgtcatctcc tttgatataa tatatacaaa agacaattca tctcctaatc agttttgttt
     2041 tgaataaaaa atatttgcaa aatactgttt tgttttgtgc aatacataaa tcttcaaggt
     2101 actataaaac aaacataaga gatcgaaggg aaaaattaat acagatagtc attttatttt
     2161 tataaaatgg atattactga taggttattt cttattacaa gagatccaac tgaggagatt
     2221 attacaaagg atgaattgac gtatgttctg gaaactgtag cgtatccaaa acattacatt
     2281 ggattggaac tatcaggtaa actacaccta ggcagcctaa tcttaaccgg ttttaaaatc
     2341 aatgatttta tcaaggctca aatacattcc actgtatttc tagccgattg gcacacgtat
     2401 atcaacaaca agttaatggg agactgggat aagatcaagg aggtttcaaa gtact
//
LOCUS       DASQSJ010000102         3416 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_92186, whole genome shotgun sequence.
ACCESSION   DASQSJ010000102 DASQSJ010000000
VERSION     DASQSJ010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92186"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..861
                     /locus_tag="VE223_02130"
     CDS             <1..861
                     /locus_tag="VE223_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HZC20419.1"
                     /translation="LVMKEKPKVSWDEVVGLEDAKRAIRESIVYPTKRADLFPLGWPK
                     GILLYGPPGCGKTLLAAAAAAEIDGYFINVDAASMMSKWLGEAEKNVSKLFSMARKQN
                     ENENAPVLLFIDEIDSFLGTRNSEVGGEVRVKNQFLTEMDGISVKSKGSQLYVIGATN
                     KPWTLESGFLRRFQKRIYVTLPDLASRTNLFYQYTAPLKKEKALKSEDLAKLAEGYSA
                     SDIKDICQSAQLRVVNELFESGKALEAESITRSITVADFKEIFKMRKPSVSTDMIRGY
                     LRWSDQFKAL"
     gene            1108..2085
                     /locus_tag="VE223_02135"
     CDS             1108..2085
                     /locus_tag="VE223_02135"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HZC20420.1"
                     /translation="MRFLALQQNNMLKLVNIAMSKRINLLLPFTFLIMVSLVLSATNI
                     FYKAIPTVYAQTNSAGLASHVLVANGGNTTTKTTITNEGLEVKKDVKYFDGASGYLVY
                     PSTIAAVSTTTGATGKKLPAVIMIHENRGINDNIRNMANTLAKQAGYVILAVDLFKGV
                     STNDPSQAMQLVKSVRGNPQEAISNLQAAVKYLSSLPFVDSSKIASIGWCFGGGQSLQ
                     LALHSEQHPLVATILYYGSPLVTDKQELSKIKWPVLGIFGDHDQAIPLQQINMFKAAL
                     DADGITNQIQIYKGLGHAFANPSGTNYAPKQTADAWEKTLAILKKYVQS"
     gene            2327..3319
                     /locus_tag="VE223_02140"
     CDS             2327..3319
                     /locus_tag="VE223_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HZC20421.1"
                     /translation="MSTTNKILSNLMWVEKYRPIKLEQVINQKEIVNGLKNLIKNPYE
                     IPHLLFAGSAGVGKTTTALCIARELLGEDWQRNTLELNASDERGIKMVRERVKEFAAV
                     MKLAIDTKDDVSFRIIILDEADEMTSEAQTALRRIIEDSSKTTRFIIICNYLSQIIEP
                     IQSRCVVFRFMRLAKEDVIGYLKMICEKEGVKYEEKALSQIYGATSGDLRHSINILQA
                     SAGMGSVSVANVIASIGLSGKAKVGEIIRSAIAGKFNDARIKLLELTNVYGMSEADFL
                     KYANQELYDMKLEHLDELAALMAEFDYRLAVGAHPEIQLSALLAQLGKLGSKGK"
BASE COUNT         1118 a          593 c          704 g         1001 t
ORIGIN      
        1 cttgtaatga aagagaaacc taaagtctct tgggatgaag ttgttggatt agaggatgca
       61 aaacgtgcaa taagagaatc catagtatat ccaacaaaaa gagcggattt gtttcctctt
      121 ggctggccga aaggcatatt attgtatggt ccaccgggat gtggtaaaac tttacttgca
      181 gcagctgctg cagcagaaat tgatggttac tttatcaatg ttgatgcagc ttctatgatg
      241 agcaagtggc taggcgaagc ggagaagaat gtttcgaaat tattttctat ggcgcgtaaa
      301 caaaatgaaa atgaaaatgc cccggtattg cttttcatag atgagatcga ttcattttta
      361 ggtaccagga atagcgaagt tggaggggag gtacgagtaa agaatcaatt tttgactgaa
      421 atggatggaa ttagtgtaaa gtcgaaggga tcacagcttt atgtcatagg cgccacaaat
      481 aaaccttgga cattggaatc tggatttctc agaagatttc aaaagagaat ttatgtcaca
      541 cttcctgatc ttgcttcaag aactaattta ttctatcagt atactgcacc attgaaaaaa
      601 gaaaaagcat tgaagtctga agatctcgct aagctggcag aagggtatag tgcaagtgac
      661 atcaaagata tatgccagtc cgctcaactt agagttgtta atgaattgtt tgaaagtgga
      721 aaggcactgg aggcagaatc cattaccaga tctattaccg tagctgactt taaggagatt
      781 ttcaagatga gaaaaccaag cgttagtaca gatatgatac gaggttatct gagatggagc
      841 gaccagttta aggcgctttg atactattag atcattagtt aggtttgtca tctgattttt
      901 tcaactttat gagcaagctc aataagtagc agttaatttg tgaattcgag attgattggt
      961 tgaacagcat cagaatatta attgacatga atgcagcata agagacatac gtggcattga
     1021 ctccaaaatc tcatcatttt gtctctcctt agatgacatt ttacttatag tttttctata
     1081 gcatgttgta tcattgattg ttgagcaatg cgatttctag cattacaaca aaataatatg
     1141 ttgaaattag taaatatagc aatgagtaaa aggattaatc tgctcctccc ttttaccttc
     1201 ctaattatgg tctctttggt cttgtcggca acaaatatct tctataaagc aatacctact
     1261 gtctatgccc aaacaaactc tgctgggctt gcctctcatg tcttggtagc taatggtgga
     1321 aatacaacaa caaaaactac tatcactaac gaaggactag aagttaaaaa agatgtcaaa
     1381 tattttgatg gtgcttctgg ctatttggtg tacccttcta ccattgctgc tgtctctact
     1441 accaccggtg ctacgggcaa gaaactgcca gctgtaataa tgattcatga gaatcggggc
     1501 ataaatgaca atataagaaa catggcaaac acccttgcta aacaagccgg ctatgtcata
     1561 ctagctgtgg atttatttaa aggcgtgtca accaatgatc caagtcaagc tatgcaacta
     1621 gtaaaatcag ttagaggtaa tcctcaagaa gctatatcaa atctacaggc cgcagtgaaa
     1681 tatttaagtt cccttccatt cgttgatagt tctaaaatag cttctattgg ctggtgtttt
     1741 ggcggcggac aatctcttca gctagctttg catagcgagc aacacccact tgttgctacc
     1801 atattgtact atggaagtcc tttggttaca gacaaacaag agctctcaaa gataaagtgg
     1861 cccgttttag gaatatttgg tgaccatgac caagctattc cgctacagca aataaatatg
     1921 ttcaaagcag cgttggatgc tgacggaatt acaaaccaaa ttcaaatata caaggggtta
     1981 ggacatgctt ttgcaaatcc ttctggcact aactacgctc cgaaacaaac tgcagatgca
     2041 tgggagaaga cattggcaat tcttaagaaa tacgttcaga gctaaaatca tacgcgtttt
     2101 ccttgcattt ttaaaatttg taaatattca cacgatgggc tttctattgc aataccaaca
     2161 ttttgaggct ttgacataga tacagtggat tcctgacaat tattaaattc tcaatgacac
     2221 tgctcaattc attcattcta agacattcgc ttaaaatgtg cttttaggtg ttaatcagtt
     2281 aagttattaa tcctgttaaa acatacatcg tgggtaatac tgtgacatgt ctacaacaaa
     2341 taagatcctt tcaaatttga tgtgggttga aaaataccgg cctataaaac tagaacaagt
     2401 cataaatcaa aaggaaattg tcaacggatt gaaaaatctt attaagaatc catatgagat
     2461 tcctcatctt ttgtttgcag ggtctgccgg ggtaggcaag actactactg ctctgtgtat
     2521 tgcaagagaa ctacttgggg aagattggca gagaaacacc cttgaactaa atgcatctga
     2581 cgaaagagga attaaaatgg ttcgtgaacg agtgaaagaa tttgcagccg tgatgaaact
     2641 tgcgatcgac actaaggatg atgtatcttt tagaataatc attcttgatg aggctgatga
     2701 aatgacatct gaagctcaga ccgcactgag aagaatcatt gaagatagct caaaaacaac
     2761 acgcttcata ataatctgca attatctatc ccaaattatt gaaccaattc aaagcaggtg
     2821 cgttgtattc cgctttatga ggttagcgaa ggaagatgta ataggttatc tgaaaatgat
     2881 ttgcgaaaaa gaaggagtaa aatacgaaga gaaagcactc tcgcagattt acggtgctac
     2941 ttctggagat ttgcgccatt caatcaacat tcttcaagca tcagctggga tgggatctgt
     3001 ttcagttgcc aatgttattg catcaatagg actttcgggt aaagctaaag ttggggaaat
     3061 tattagatcc gcgattgcag gaaagtttaa tgatgccaga atcaaattgc tcgaattaac
     3121 aaacgtatat ggaatgtcag aagctgattt tctcaaatat gctaatcaag aattatacga
     3181 tatgaagtta gagcatttag atgaattggc agcactgatg gcagagtttg attatagact
     3241 ggcggtaggt gcacatcctg aaattcaatt atctgccttg ctcgcacaat tgggaaaatt
     3301 gggatcgaag gggaaataga tgctagatca tgtcattttc tactcagaaa ctactctaaa
     3361 agatcaatca agatataatc tgacacttac attttctatt attgactgca acatca
//
LOCUS       DASQSJ010000103         5154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_403995, whole genome shotgun sequence.
ACCESSION   DASQSJ010000103 DASQSJ010000000
VERSION     DASQSJ010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5154
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403995"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..435
                     /locus_tag="VE223_02145"
     CDS             280..435
                     /locus_tag="VE223_02145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20422.1"
                     /translation="MVDSNNGMLSSEDGTTCDNCGNPLEACMCACPYCGERDACECCL
                     YDVVTGG"
     gene            506..2476
                     /locus_tag="VE223_02150"
     CDS             506..2476
                     /locus_tag="VE223_02150"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HZC20423.1"
                     /translation="MTQSKISNSLTWVIGGAQGSGVDSAANIFSKACSQAGLYIFGKR
                     EYYSNIKGEHSYFTVRVSDKQIRSHVDDINLLVSFDAETLFRHGDKVTKGGGIIYDQD
                     LVNTTIQEVPTIDDQALKKITNMLKEANKSLTVQGMLDYAKDNGAILYNVPYFQLLRE
                     FSEKINDHSLSKLTRTVNVMALSASMAVLDFDMAVLTRAIKHIFRAKPKIAELNIAAA
                     NYSYNYVKSRFNSTEFRFKLTKVQTSSDIILMQGNQSSAMGKISAGCRFQTYYPITPA
                     SDDSEFLESNQIIESTSDGKKDSIVVVQTEDEIAAITMAIGGALTGVRSATATSGPGF
                     SLMTEALGWAGINEVPVVVSLYQRAGPSTGLPTRHEQGDLMFAINCGHGEFPKIVFAS
                     GDIEESFYDTIKVFNFAEKYQLPVIHMLDKAIANSIMTCKVFDQYKVNIDRGKLLENI
                     IPAGGDTGVAGNYLRFKFDENPISSRVRLGTENGIFWNTGDEHSEEGHITEDPDNRIK
                     MMNKRMSKLDLALKEISAEDKAIAYGHNDPSSGMTIVSWGSTKGAILDAIDQLTAEGK
                     NVKFVQVRLMHPFPSSLVEKMLENTKVLVDIEMNYTGQLGLLIKQNLNRNINYKIVKY
                     NGRSMSSSEIYNALMYIISGNAPRRIVLEHGA"
     gene            2466..3434
                     /locus_tag="VE223_02155"
     CDS             2466..3434
                     /locus_tag="VE223_02155"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HZC20424.1"
                     /translation="MALKLADYKTTVHNDWCPGCGDFGILNAIQMALSEMQTPLHRAT
                     IFSGIGCSGKTPHFIHTYGIHTLHGRVLPFAQGAKICNPDLEVLAVGGDGDGLGIGAG
                     HFISSGRRNVDMVYIIFNNAVYGLTKGQAAPTLKLGMKTKSLTQPNMNNSVNPIALAL
                     VAGFTFIGRGYSYDVRHLKDLIKKAIEHKGLAFLDVLQPCPTYNDINTKEWYQGLDNF
                     NPENGKQMPRTYKLEETGYDGIVRQPYEVSTKMGQAIERSNEWGSKIPLGIFYQNEHI
                     PTYQDRIVGRISNYLEIPPAKQDISDQNNKPVAKLDKLLDDLRADK"
     gene            complement(3696..4346)
                     /locus_tag="VE223_02160"
     CDS             complement(3696..4346)
                     /locus_tag="VE223_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia monooxygenase"
                     /protein_id="HZC20425.1"
                     /translation="MVWLRRTTHYLFIVVVAVNSTLLTINAGDYIFYTDWAWTSFVVF
                     SISQSTMLAVGAIYYMLFTGVPGTATYYATIMTIYTWVAKGAWFALGYPMDFVTVPIW
                     IPSAMLMDLTYWATRRNKHAAIIIGGTLVGLSLPMFNMINLLLIRDPLEVAFKYPRPT
                     LPPYMTPIEPQVGKFYNSPVALGSGAGAVLTVPIAALGAKLNTWTYRWMAAWSKWD"
     gene            complement(4825..>5154)
                     /locus_tag="VE223_02165"
     CDS             complement(4825..>5154)
                     /locus_tag="VE223_02165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20426.1"
                     /translation="LKVHIMIVYLMTLPKGYGGGGRGGGGAYGSRDDIERMIGRRVEN
                     MKGILILGFAACWAATAGGIYVGVTVYPWAYPLPSGIYALSVLTVIEALGFFFMMKII
                     GEKTIRA"
BASE COUNT         1713 a          921 c         1027 g         1493 t
ORIGIN      
        1 ccttaggatc aagttcagtc gcaacaagag atattgtcat gaatctcaat gcttagaacg
       61 ttgtatttag ttattagttt ttcttattgg gggtttttgt tacatcaaac ttatctctta
      121 ttattgatct ctgtcagaag ctgttgaata taccttaacg ttgagtgtct atccatagaa
      181 gcaagtttgc aagaagggta tgaaagctta cgattaatgc ttagacagta agcgtgtaaa
      241 gtataataag ttaaagaaaa cacaacatat tgcaataatt tggtagatag taataatgga
      301 atgttgagta gtgaagatgg aactacttgc gacaattgtg gaaacccgct agaagcatgc
      361 atgtgtgcat gtccatattg cggcgaaaga gacgcctgtg agtgttgcct gtatgatgta
      421 gtcactggcg gttagtctag ctttgactag attttaattt caattctaaa gcattaaaag
      481 caggaaaagg gaaagtactt tgataatgac ccaatcaaaa atttccaatt ctttaacttg
      541 ggttatcgga ggagcacaag gaagcggcgt tgattctgcc gctaatattt tctctaaagc
      601 ctgttcacag gcaggattat atattttcgg taaacgggaa tattactcta atataaaagg
      661 tgaacacagt tactttacag taagggtttc agacaagcaa attcgttcac atgttgatga
      721 cattaattta cttgtttctt ttgatgctga aacattgttt aggcatggag acaaggtaac
      781 aaaaggtgga gggataattt atgatcaaga tttagttaat acaactatcc aagaagttcc
      841 aactatagat gatcaggctt taaaaaaaat tacaaatatg ctgaaagaag ccaataagtc
      901 gttgactgtc caaggaatgt tagattatgc aaaggataat ggagcgatcc tctacaatgt
      961 cccatatttc cagctattga gagaattttc agagaagatt aatgaccatt ctctaagcaa
     1021 acttacaaga acggtcaacg taatggcatt atccgcatca atggcagttt tagattttga
     1081 tatggcagtc ttgactaggg caatcaaaca tatcttcaga gcaaagccaa agatcgccga
     1141 gcttaatatt gcagcagcaa attactcgta taactatgtc aaatcaagat ttaattccac
     1201 agaatttaga tttaaactaa caaaagtcca aacctcttct gatataattc ttatgcaggg
     1261 gaatcaatcc tccgccatgg ggaaaatatc tgcaggatgt aggttccaga catactaccc
     1321 cataactcct gcaagtgatg acagcgagtt tttagaatct aatcagataa tagaatccac
     1381 atccgatggc aaaaaggatt ctatagtagt tgtacaaacc gaagacgaaa tagctgcaat
     1441 tactatggct atagggggag cattaactgg agtacgttca gctactgcta cttcgggacc
     1501 aggtttttcc ttaatgactg aagcactggg ctgggctgga attaatgaag tcccagttgt
     1561 agtatcactg tatcaacgtg caggtccatc tacaggtctt ccaacaagac atgaacaggg
     1621 cgatttaatg tttgctatca attgtggaca tggagagttt ccaaaaattg tttttgcatc
     1681 cggtgatatt gaagaaagtt tctatgacac gataaaggta ttcaatttcg cagaaaagta
     1741 tcagctgcct gttatacata tgcttgataa agcaattgca aatagcatca tgacatgcaa
     1801 agtttttgat caatacaaag tcaacataga taggggaaaa ttattagaaa atattatccc
     1861 agctggtggt gatacggggg ttgctggaaa ttatttacgg ttcaaatttg atgaaaatcc
     1921 aatctcttca cgagtaaggc taggaacaga aaatggaata ttttggaata ctggcgatga
     1981 acattctgaa gaaggtcata ttacagaaga tccagataat aggattaaaa tgatgaataa
     2041 aagaatgagt aagctggatc ttgccttaaa agaaatatca gctgaagaca aagcaatagc
     2101 atacggacat aatgatccat catctggcat gacaatagta agctgggggt ctaccaaagg
     2161 cgcaattctg gacgcaatag atcagttgac agcagaaggg aagaatgtca aatttgtcca
     2221 agtcagactg atgcatccat ttcctagctc tctggtagaa aaaatgttgg aaaataccaa
     2281 agttttagta gatattgaaa tgaattatac aggacaacta ggattactca taaagcaaaa
     2341 tttgaaccgt aatattaact ataaaattgt caaatataat ggaaggtcaa tgtcttcaag
     2401 tgagatttat aatgctttaa tgtacataat cagtggtaat gctccgagga gaattgtatt
     2461 agaacatggc gcttaaactg gcagactata aaacaactgt tcataatgat tggtgccctg
     2521 gctgcggaga ctttggtatt ctaaatgcta tccaaatggc tctgtcagaa atgcaaacgc
     2581 ctctgcaccg cgcaacaata ttctccggaa taggatgctc aggtaagact cctcatttta
     2641 tccacaccta tggaatacat actttgcatg gcagagtttt gccatttgct caaggtgcaa
     2701 agatatgtaa ccctgacttg gaagtactgg ctgtgggtgg tgatggtgac ggtttaggga
     2761 ttggtgctgg gcattttata agttctggca gacgaaatgt agacatggtt tacataatat
     2821 tcaataatgc tgtgtacggt ttaactaaag gtcaagctgc acctactcta aaattaggaa
     2881 tgaagacgaa atcactgaca cagccaaata tgaacaattc tgttaatccg atagctctcg
     2941 cgttggtagc aggttttact tttataggca ggggctattc atacgatgtt aggcatttaa
     3001 aggacttgat caaaaaggca attgagcata aaggactagc ttttttggac gttttgcaac
     3061 cctgtccaac atacaatgac attaatacaa aggaatggta tcaaggacta gataatttta
     3121 accctgaaaa cggtaagcag atgccaagaa catacaagct tgaagaaaca ggatacgatg
     3181 gcatcgtacg ccaaccgtat gaggtaagta ctaagatggg ccaggcgatc gaaaggtcaa
     3241 atgaatgggg gagcaagatt ccattaggta ttttttatca aaatgaacac attccaacat
     3301 accaagacag aatcgttggt aggatatcta attatcttga aatcccgcca gcaaaacaag
     3361 atatttcaga tcaaaacaac aaacccgttg ctaaacttga caaactttta gatgatctta
     3421 gagctgacaa atagaataga acgtataaac tactaattat tattacttat attctgtttt
     3481 cacattttat gcatttttga tgtattactg caaagccatt aatacgcacg gtttcttata
     3541 aaacataaat ctaatgtttg gtaatagtag tagctacgat atatacattg agtccagtcg
     3601 ataaattata acgattaatt gcatatagca aacaagaaaa gcatctcatc cattcaagaa
     3661 caaaagaaaa ttggggagtt ttagtcttgg gaattttagt cccatttgct ccacgcggcc
     3721 atccatctat aggtccacgt gttcaatttt gcacctagtg ctgctattgg cactgttagt
     3781 actgctcctg cacctgaacc caatgctaca ggactgttgt agaatttacc gacctggggc
     3841 tctattggtg tcatataggg tggaagtgtg ggtcttggat acttaaatgc aacctcaagt
     3901 gggtccctta tcagcaataa gttaatcatg ttgaacattg ggagtgaaag gccaactaga
     3961 gttccaccaa tgattattgc agcatgttta ttgcgcctcg tagcccaata tgttagatcc
     4021 atcaacattg ctgagggtat ccatattggt actgtgacga agtccattgg gtatcctaat
     4081 gcaaaccatg caccctttgc tacccatgtg tagatggtca tgatggttgc atagtatgta
     4141 gcggttcctg gaacaccagt aaagagcata tagtatattg ctcctactgc aagcatagtc
     4201 gactgcgaaa tcgaaaatac tacgaatgaa gtccaagccc agtcagtgta gaagatgtag
     4261 tctcccgcat taattgtcaa tagagtgcta tttacggcaa ctacaactat gaatagatag
     4321 tgcgttgtac gtctaagcca gaccattaca aaacctactc catgatgttg tatataaaat
     4381 tttatctaga ttgatcgtct ttgttcactt aataactcta tcctattgct ttaaatggcc
     4441 aaattcaaaa taagcacaag gcttcagata tatttatcat gcatcatagc aatgcttttt
     4501 cgattcatcg aaaacatcat agagatgtcg tgatttatca aaggaaggaa tgttctactt
     4561 ggaattagat aggatttaac aaaataatct attaatctca tgcgttattg tccgacaaaa
     4621 ccacaaaggc aattgtgata aacaccgatt atttcaaaaa ttcaacttaa cgcatagagc
     4681 caattagtca ttctgaatgt cgatcgtaac cgagcatgct atttcataag gcattcttgt
     4741 aatttagctt ataagattct attatattat gtgatacatg aatgtcaaga aataaactat
     4801 gcaaaaaaat agaaaataag gtgattatgc acgaattgtt ttttcgccta tgatcttcat
     4861 catgaagaag aaacccaatg cttcaattac tgtaagcaca gagagtgcat aaatgccact
     4921 tggcaacgga tatgcccatg gatagactgt tacacctaca taaattccgc cggcagttgc
     4981 tgcccaacat gctgcgaagc ctaatattaa aatacccttc atgttttcaa ccctgcggcc
     5041 aatcatccgt tcaatatcgt ctcggcttcc ataagcaccg ccgcctccac gtccaccgcc
     5101 accatatcct ttaggtaaag tcattaagta tacaatcata atatgcactt ttaa
//
LOCUS       DASQSJ010000104         3671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_364082, whole genome shotgun sequence.
ACCESSION   DASQSJ010000104 DASQSJ010000000
VERSION     DASQSJ010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364082"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..649)
                     /gene="argS"
                     /locus_tag="VE223_02170"
     CDS             complement(<1..649)
                     /gene="argS"
                     /locus_tag="VE223_02170"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF015450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HZC20427.1"
                     /translation="MTFRALVNEIHKAISLSLRNLDFPEQDFEISEPSRAEYGDLTCN
                     VSFQLSRKINKRPFDIAYQIVEKQLKPYLNEEKKNRSTFILSAEAHPAGYINFKANFE
                     KLTESTLNEALKNPSYGFYDFGKGRVVLIEHTSVNPNKSLHIGHIRNTVIGDVIYRIM
                     KATNHKTIVLNYIDDSGLQVADIVVGFRFAGFPLEPNDKSIKFDHYCGDQVYVKVN"
     gene            complement(624..1355)
                     /locus_tag="VE223_02175"
     CDS             complement(624..1355)
                     /locus_tag="VE223_02175"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HZC20428.1"
                     /translation="MDSISSFAIDIDGTLTENGGGRLYIPAIEALRYLERLGYNIIYV
                     TGRSSIEAYVLAVFIGTTKIAVGENGGAVTTAPQEHVLLASKEKCLRGYEILKKNIDG
                     IKIKPVFERMTEVVLSRTFDIEEGRKILKENNLDLSINDSKYAFHINEKGIDKAIGLK
                     EALKMLKAHAEQTVAIGDSETDVPMFDICGYSVALNHAPENVKSRASHVVRGTEGVGV
                     VDAIDFVAFNYMGLRSKNDISSLSE"
     gene            1804..1894
                     /locus_tag="VE223_02180"
     tRNA            1804..1894
                     /locus_tag="VE223_02180"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1855..1857,aa:Arg,seq:ccg)
     gene            1980..2363
                     /locus_tag="VE223_02185"
     CDS             1980..2363
                     /locus_tag="VE223_02185"
                     /inference="COORDINATES: protein motif:HMM:NF013450.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20429.1"
                     /translation="MALEVITLHDHANSLLNRREIKILLKNSAGRINRSEASDLLAKQ
                     LNVDKKKVIPIVMTCHRGKTDIDATFYVYKSEEELNQLPRFRLLRSMPKAERKKLMDE
                     EKAQKLKARQSSGAEKKTGTTRSRR"
     gene            2367..2588
                     /locus_tag="VE223_02190"
     CDS             2367..2588
                     /locus_tag="VE223_02190"
                     /inference="COORDINATES: protein motif:HMM:NF001669.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27ae"
                     /protein_id="HZC20430.1"
                     /translation="MVDRKSATKCEVAVHKFYAIEENKINRSRRDCPRCGKGVFMAQH
                     NDRHTCGKCGFTEFTHKEQSKKGSKKSSY"
     gene            complement(2582..>3671)
                     /locus_tag="VE223_02195"
     CDS             complement(2582..>3671)
                     /locus_tag="VE223_02195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20431.1"
                     /translation="LLILRSNGSLMQISEKRVDVQRSMKVASLKLTKRMQEFASYFIH
                     AYAGRHTLQYIIKEAEAKINRHKEYRGELPMFISNPKEYYWRLPEGFLITDDKNWLNV
                     YAKSRGLFGYAISSKHKLGTTRSTTISFALFDLNDSSRKKTIVVKEFAKSKAARWASL
                     KMRPAYDRRVGKYNIDPLFKLGNEYKALRYIRFLGLNSPIIESVVVGKKILITEFVEG
                     KLISDIIKNCLKNNVTDELDWIKLAGEKIATIHADRCTLGDIKPRDLIISKDTLYITG
                     IEDFGFKSGDPVLDIIHFVSQGLKKTRNTMMAKQITKQFLYGYSKETTKNYIKKLIDG
                     KYYSELFYPLFTPAVAQTVRKELTTFTQ"
BASE COUNT         1064 a          742 c          670 g         1195 t
ORIGIN      
        1 catttacctt aacatatact tgatcgccgc aataatgatc aaactttatg gatttgtcat
       61 taggctcgag aggaaagcct gcgaatctga atccgacaac aatatctgca acttgcagac
      121 ccgaatcgtc gatatagttt agtactatgg ttttgtgatt cgtcgccttc ataattctgt
      181 atattacgtc tcctatgacg gtgttccgaa tatggccgat atgtaatgac ttatttggat
      241 taacacttgt atgctcgatc aagaccaccc tacccttgcc aaaatcgtaa aaaccataac
      301 tcgggttttt aagcgcctca tttaatgtac tttcagtcaa tttctcgaaa tttgctttaa
      361 aattaatgta acctgcagga tgtgcttcag cagacaaaat aaaagttgaa cgattcttct
      421 tctcctcatt caaatagggc ttcaactgtt tctctacaat ttgatatgca atatcaaatg
      481 gccgcttatt gatttttcta ctcagctgaa aagagacatt gcaagtcaag tctccatatt
      541 cggccctgga tggctctgag atttcaaaat cttgttctgg aaaatctaaa ttcctaaggc
      601 tcagtgatat ggccttgtga atctcattca ctaaggctcg aaatgtcatt cttggatctc
      661 aatcccatat aattgaaggc tacaaagtct atggcatcta ccacacctac gccttcagtg
      721 cctctcacta catggcttgc cctagattta acattctcag gagcatgatt tagagcaaca
      781 ctataaccac atatatcgaa catagggacg tcagtctcac tatcacctat agcaacagtt
      841 tgttcagcat gggcctttaa catctttagt gcctccttca atccgattgc cttgtctatc
      901 cctttttcat taatatgaaa tgcatatttg ctgtcgttga tagagagatc taaattattc
      961 tctttcaata ttttacgacc ttcttctata tcaaaggttc tggaaaggac aacttcagtc
     1021 atcctttcaa aaacaggttt aatcttaata ccgtcaatgt ttttttttaa tatttcatag
     1081 cccctcaggc atttctcttt acttgccaaa agaacatgct cttgaggtgc agttgttacc
     1141 gcgccgccgt tctctccgac agcaatcttt gttgtgccaa tgaataccgc aagcacgtat
     1201 gcttctatcg atgaccttcc ggtcacatag attatattgt aaccaagcct ttctaggtaa
     1261 cgtaaggctt cgatagcagg tatatacaac cttcctcctc cattttcagt caatgtaccg
     1321 tcaatatcaa tcgcgaagct acttattgaa tccaacagaa cgtataaccc aataataatt
     1381 ttgaaatata agtgtagtgt aaaatatcaa tattaatctg tttgtgggtt ttattagcga
     1441 ttgattggcg caatccaaca cttctgacaa taatagttct atttgtcttt gagctagtgt
     1501 cttttatctt tcattatctc acgatgctcg aagtaagata ttttgtttat ctatttgatc
     1561 ctaagtggac tttattacct aaaactatgt tcgtgagcgc agggtttgat ctcaggcgta
     1621 cgattttccg cattacccag agcatttatt ttttttgata tcgcctttgt tgatcacgta
     1681 tttgactagc aattaattag cgacacgtta taacattttt ctccgtaaat tctccttatt
     1741 tataaaaagg ctgtctccag ctgtatttac gattatatat ccacgaatga gggataagta
     1801 ccagggtccg tcacccagtc aggatagggt gctgatttca ttaagcatta gcctccggag
     1861 ccagtagtcg tgggatcgaa gcccgccgga cccgcttttt taagcattaa ggtctatgct
     1921 agtcctgatg aacctctgca tgcaaatgct tatatgactt tcaagataac ttctggaaat
     1981 tggctttgga agttattaca ctacatgatc atgcgaattc tttgcttaat agacgggaaa
     2041 ttaaaatact tcttaaaaac tctgctggaa gaataaacag gtccgaggca tctgatttgc
     2101 ttgcaaaaca gcttaacgtt gacaagaaga aagtcattcc tatagtaatg acatgccata
     2161 gaggaaaaac tgatattgat gccaccttct atgtttacaa gtctgaagaa gaattgaacc
     2221 agcttccgcg gttcaggttg cttaggagta tgccaaaagc agaaaggaaa aaattgatgg
     2281 atgaggaaaa agcacaaaaa ttgaaggcaa gacagtcctc tggagcagag aaaaaaactg
     2341 gcaccactag atcgaggaga tagttcgtgg tagacagaaa atctgcgaca aaatgcgaag
     2401 tcgccgttca caaattctat gcgattgagg agaacaagat taatagaagt agacgtgatt
     2461 gtccacgctg tgggaagggt gtgttcatgg cccagcataa tgatagacac acatgtggaa
     2521 aatgtggatt caccgaattc acgcataagg aacaaagtaa gaaaggttcc aagaagtcca
     2581 gctactgagt aaaagtggtt aattctttcc ttaccgtttg agcgacagct ggtgtgaata
     2641 ggggatagaa tagttcactg tagtattttc catcaatcaa tttttttata taattcttag
     2701 ttgtctcttt tgaatagcca tataggaact gttttgttat ttgcttggcc atcattgtat
     2761 tccgtgtttt ctttaatccc tggctgacaa aatgaataat gtccaaaact ggatctccgg
     2821 acttgaatcc gaagtcttcg atcccagtaa tatataatgt atctttactt attatgagat
     2881 cgcgcggttt tatatctccg agagtacatc tatctgcatg aattgttgca atcttttctc
     2941 cagcgagctt gatccaatca agttcatctg taacattatt ttttaagcag ttttttatta
     3001 tatctgagat gagcttgcct tcgacaaatt cggtgattag tatttttttt cctacgacta
     3061 cagattcgat aatagggcta ttcaatccaa ggaaccgaat atacctcaaa gctttatact
     3121 cgttgcccaa cttaaaaagg ggatcaatat tatactttcc gacacgtcgg tcataggcag
     3181 gccgcatttt aaggctagcc catcttgctg ctttggactt tgcgaattcc ttcaccacga
     3241 ttgttttctt gcggctgctg tcattaaggt caaataaagc aaatgaaatg gtagtacttc
     3301 tcgtggttcc caatttgtgt ttgctagaaa ttgcatatcc aaaaagacct cttgattttg
     3361 catacacatt tagccagttt ttgtcatccg ttatcagaaa accttctggt aatctccagt
     3421 agtattcctt aggatttgag ataaacatag gtaattctcc acgatattct ttatggcggt
     3481 tgattttcgc ttccgcttct tttataatgt attgtaacgt atgtctacct gcataagcat
     3541 gaataaaata agaagcaaat tcttgcatcc tttttgttag ttttaaagaa gcaaccttca
     3601 tggatctctg aacatcaacc cgtttttcag agatctgcat taagcttcca ttagatctca
     3661 ggatcaataa t
//
LOCUS       DASQSJ010000105         2810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_563229, whole genome shotgun sequence.
ACCESSION   DASQSJ010000105 DASQSJ010000000
VERSION     DASQSJ010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_563229"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..893
                     /locus_tag="VE223_02200"
     CDS             <1..893
                     /locus_tag="VE223_02200"
                     /inference="COORDINATES: protein motif:HMM:NF022829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2795 domain-containing protein"
                     /protein_id="HZC20432.1"
                     /translation="SSSSTPEDELHTTLSKSTEDYPQNNNVEEREKMQNIANHSGVLL
                     DEIKNNIERSIDESRSQIPRYTQIINESQEQVITSAREIADNYIESQKEIINSFQSLW
                     TQFAQNMYKIHYGWWISPRKMIEVYSRIVSNFADNIIATTRLLNNAASANMEVFKTSI
                     QQAKDNAKDLTRIQINAARTFEQHFNNSSNAKRGYPEQIPKEDVSGEIEKVISEQGGV
                     EGQRKEVNVESYSKTASLGQILKDLDFPAGKDKIIQFVQQQQQQQNPNEGDLMSVLQR
                     IEDREYRNVSDVTKAAGLVY"
     gene            complement(1234..1683)
                     /locus_tag="VE223_02205"
     CDS             complement(1234..1683)
                     /locus_tag="VE223_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20433.1"
                     /translation="MQELNLCTAGINLHKIDTHENKEGIVISGTANNLFGSQDDNNNK
                     LSASILKLKIRNTTEYLNWRIAILKRDNFKCRMCSARIKDNKGLRLEVHHAKSFNDIC
                     KENNITTIKQALTCKQIWSLNNGISLCYSCHKNSEKLRTKMKNMFVI"
     gene            complement(1807..2313)
                     /locus_tag="VE223_02210"
     CDS             complement(1807..2313)
                     /locus_tag="VE223_02210"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase domain-containing protein"
                     /protein_id="HZC20434.1"
                     /translation="MTGDSHEVVKMGYEDALLLVTQTIDKIMTGDGIQQQDLVISKLL
                     RQDIAKYKSLFPHVSAAIQLSNGTGKHPMKGDTIQYVYTNSKHNNPLCSVAPIAIGNA
                     QAASLSQYDKEKYREMVLDAAETILGFFGFDRTVYSSNTRNKKGRRKWYDELREERTR
                     DIQTEMSE"
     gene            complement(2458..>2810)
                     /locus_tag="VE223_02215"
     CDS             complement(2458..>2810)
                     /locus_tag="VE223_02215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20435.1"
                     /translation="KESMEYVWCEQRVNSLKNILVCLYGSTGSLWNRYGNVLAFEEIN
                     KLSRDILIRTKDIVQQSGYELIYADTDSVFIKKNDCTPTTKYGMMNLSIHFPRKLAFQ
                     SQLTTITSFWFCYL"
BASE COUNT          884 a          489 c          496 g          941 t
ORIGIN      
        1 tgtcgtcttc ttcgacacca gaagacgaat tacatactac attatcaaag tcaacagaag
       61 attatccaca gaataataat gtggaggaga gagaaaaaat gcaaaatata gcaaatcata
      121 gtggtgtatt gctcgatgaa attaaaaata atattgaaag atctatagat gagtcaagga
      181 gtcaaattcc acgttacacc caaataataa atgaatccca agaacaagtt attacatctg
      241 ctagagaaat agcagataat tatatagaat cacaaaaaga gattatcaat tcattccaat
      301 ccttatggac ccaatttgca cagaatatgt acaaaatcca ttatggatgg tggatatctc
      361 cacgaaagat gatagaagta tactcaagga ttgttagcaa ctttgcagat aatatcattg
      421 caacaacgag gttattaaac aatgctgcat ctgcgaatat ggaggtattt aagacttcga
      481 tacaacaagc aaaagacaat gctaaagacc taaccagaat tcaaatcaat gcagcaagaa
      541 catttgaaca gcatttcaat aatagcagta atgccaagag aggatatcct gagcaaatac
      601 ccaaggaaga cgtttcagga gagattgaaa aggttataag tgaacaaggt ggagtagaag
      661 gccagagaaa ggaagtaaat gtagaaagtt attcaaagac tgcatcttta ggacaaatat
      721 taaaggatct tgattttcct gcaggtaaag ataagataat ccaatttgta caacagcaac
      781 agcaacaaca aaatccaaat gaaggcgatc taatgtcagt tcttcaaaga atagaagata
      841 gagaatatag aaatgtttct gacgttacta aagctgctgg attagtttat taataactat
      901 acataggtgt ggtaaacgtt tatctgatct gacatcctca ccacacttaa aaaagtgtag
      961 actttccgga taagattggt agctaaacct attcctactg tgtacctatg tgatcaacca
     1021 gctaatcaac caaccagcaa agcagatttg gaaagacttt ggccaaaggc acaggatatg
     1081 agttccattg aaaccactaa tatatgatga tttgtcgata gtatcaagac ctcttctata
     1141 caatggagtg attattctgc ggcattccgt tatcgtatgt aggtgggtta ggttgttttc
     1201 gttattggtt ttttcattct gggatgcaag atgtcaaata acaaacatat ttttcatttt
     1261 tgttcttagt ttttctgaat ttttatggca actataacat aaagatattc cattattcaa
     1321 actccatatc tgcttacatg ttaaggcttg ctttatagtt gtaatgttat tttctttgca
     1381 aatatcattg aatgatttag catgatgtac ctcaagtctt agacctttat tgtctttgat
     1441 cctcgcacta cacatccggc atttgaaatt atctcgcttt aagattgcaa tacgccagtt
     1501 tagatattcc gttgtatttc ttattttcag ttttaatatc gatgcggata gtttattgtt
     1561 gttgtcatcc tgactgccaa atagattatt agcggtaccg gaaataacaa taccttcctt
     1621 attttcatgt gtgtctattt tatgtagatt gatacctgca gtacatagat tgagctcttg
     1681 cattaatctt ttcaatagat tatattgcta ttgctttgag agtaaaataa tcaaatgttt
     1741 tgtctacatt gtatgtatta tcttttttat tgggaaccat ttgtaaattg ttcttttctc
     1801 ttattgttat tctgacatct cagtttgtat gtcccttgtt ctttcttctc ttagctcatc
     1861 ataccatttc cttcttcctt tcttatttct ggtattacta ctataaacag tcctatcaaa
     1921 tccaaaaaac cctaggattg tttctgcagc atcaagtacc atttctctat atttttcttt
     1981 atcatactgg gacagggatg ctgcttgcgc attacctata gctattggcg ccacgctgca
     2041 aagaggattg ttatgctttg aattagtata gacatattga atggtatcac ctttcattgg
     2101 atgcttacca gtgccattgc ttagctgaat ggcagcagag acatgaggga atagactctt
     2161 gtactttgct atatcttgcc tgagtaactt cgagattaca aggtcttgct gctgaatgcc
     2221 atcaccagtc ataattttgt ctattgtttg agtgacaagc aaaagagcat cttcgtatcc
     2281 catctttact acttcatgtg aatctccagt caagtagtgt gtatagcgag tgtgtttgaa
     2341 attgttttat aaaattaggg gtatcgtgtc ttcttgtctc tatacctctt acaactaact
     2401 catcttcgta ggtaattcca aagtaatgct cgagtacttc tatcttttcg tcagattcta
     2461 aaggtaacag aaccaaaaac ttgtaatggt agtcaattga gattggaagg ccagtttcct
     2521 tggaaagtgt attgataagt tcatcatacc atattttgtt gtgggggtgc aatcgttctt
     2581 tttgataaat actgaatcgg tatcagcata tatcagttca taacctgact gttggactat
     2641 atcctttgtt cttatcagta tatccctgga tagtttgttt atttcctcaa aggcaagtac
     2701 atttccatac ctattccata aagaaccagt tgagccgtag aggcagacaa gtatgttctt
     2761 gagtgagtta actctctgct cacaccatac atattccatg ctttcttttg
//
LOCUS       DASQSJ010000106         2990 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_244944, whole genome shotgun sequence.
ACCESSION   DASQSJ010000106 DASQSJ010000000
VERSION     DASQSJ010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244944"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(781..1065)
                     /locus_tag="VE223_02220"
     CDS             complement(781..1065)
                     /locus_tag="VE223_02220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20436.1"
                     /translation="MTGGSSIIVVLGATTSLFAACPTSASLCILYVMAGSLPPIVVDI
                     AVTYYALFKVANIHLLVVTPFIAALGICAMIFGHCSLHRKKETILLATFS"
     gene            complement(1150..1311)
                     /locus_tag="VE223_02225"
     CDS             complement(1150..1311)
                     /locus_tag="VE223_02225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20437.1"
                     /translation="MKGTRLTFLITGEFPNTLESLMTQSRPANGDVGMGEYVIPYNNP
                     FAIDIITTL"
     gene            2241..2741
                     /locus_tag="VE223_02230"
     CDS             2241..2741
                     /locus_tag="VE223_02230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20438.1"
                     /translation="MILALVAAASLMYYSEVAVAKTNKIKSNIIDGTIRVAGGDSGSG
                     GSSLGASPNSITSTELKAFSHCVTTANKVRGLSSTIVADCLDTAKGNAPGSNSATTFS
                     SSTASPEATTSNGSINNITSANTKSLTSTELKSFSDCVVSARKLQALSHAVVSGCLEE
                     AEGIMH"
BASE COUNT          931 a          561 c          540 g          958 t
ORIGIN      
        1 aaagaacaca gtaattcagc ttgcagatca ggtgaacaaa aatgggcaag catctacagg
       61 actaatgaaa tttactttac aacctggaat gagatcagta gcttctagtt caaattcaat
      121 gggatctatg tcaatgtcat cgatgggatc tatgacttca gggcattaac agtctactac
      181 tattctcgta tgactgtgat atcttgtatc tgtattcaac ccaaatctct atcttagacc
      241 tacaggctct tgctattact ccacaaaagg agttacactg tatgaagtat cgtttatacc
      301 tgagcctata cgtgtcacct ctatgataag gaagcatttg agtaaccaca aaaagcacag
      361 acggcgataa ctttacgccc ttgttctaaa gcccatgtgt gtaacctact ctattcaaac
      421 gtaaagtcat tccttagaat tatgccgcgt taaaccaata atgactttac aaatgacttt
      481 acacttgctt atgttaaact tgacgttaaa ttatagatac aacacttgga aaaaccgtaa
      541 cagcttgtta caccctccat ttcacagtaa tacttaggta aaatagatat atgaaaactt
      601 tgaaaagata gtcatgagat gttcttccaa aagcatattc agatagccat tacatgaaga
      661 acattaacta taatgcaatt acaaatgtaa agaaaatgag aaccttacct ccttgagact
      721 aggcctcacg tggttccatt tttctgtaat gtcgttccag cagatttagt ccattcctaa
      781 tcaactaaac gtcgctagca ggattgtttc ttttttccta tgcaaagaac aatgaccaaa
      841 tatcattgca cagataccta atgcagctat aaagggagtg acaacgagca agtggatatt
      901 cgctacttta aacagtgcat aataagttac ggcaatatcc accacaatag gaggtaaaga
      961 tcctgccata acatacagga tacaaagtga tgcagatgta ggacatgcag cgaacaaact
     1021 tgtggtagcg ccaagaacaa ctataattga actacctcct gtcacagcaa tctacgtcag
     1081 gttctgtatg cgttgaggat aggccaatac ccaatgaaaa ataaaacaga acttgactat
     1141 gtcatttgtt tataatgttg tgataatatc aatagcgaat ggattattat atggtattac
     1201 gtattctccc atgcccacat caccattggc aggtcttgat tgtgtcataa gcgattctaa
     1261 ggtatttgga aattctccag taattagaaa agtcagtctt gttcctttca agaatagatg
     1321 agaagtggat tgattgaatt aaatgcatct gcaaatcttc taactgctag ctgacggcaa
     1381 ttgctgttct tgattctgct gcgattgctg ttccatccat cttcgagcgt ctccataata
     1441 agaatttgtt gttgagctac aggtgcgtgt atataaatac caagagaggg aatcttatat
     1501 ttatctacgt tataggtact tgattgaatc ccgaagatat ccgtatatct atctcttttt
     1561 gcttgttaga ccaatatgtc gccaaactat ctattgtcaa ggcttgctta ctattatttc
     1621 cgtagtcatt tcttcctccc attcaatttc ctttttttaa aattaaaacc gaaatggtca
     1681 tatgacatgt ttatctgttc ctgatgcatc atatacattt atcaatagcg aatcatattt
     1741 taaaaactat atgttgcaca tggacgttaa cagtactacc ctctctcctc cgtgtgactt
     1801 cctagaaaaa ctgaggcaag acaagttcag gcgcgaaatt atcatatagc ctaaagttgg
     1861 gtcgatagtt tgtctgagaa tttcaaatgt tttggtatcg tcgatcacat ctgccttgag
     1921 ttaggagcaa tcttagatga gggacaattt ataatatttg catcacttgg gattacttac
     1981 ctagttcatg agacaatttt acaaccatgt gtgggatgag gcgcaaagca atcaatatgt
     2041 gctgatttat ttataaactg tcatctatct ggcttggcct tcgattacta ttcattggtt
     2101 aggcaagatc aataaaatgt gttaaacttg tcgtagtgaa gtgtttaaca aagttaagta
     2161 aagtagtaaa agagttattt ttatacatca tatgtgtgct atataaagta gcttcgtttg
     2221 tcattttttc aatagtattt atgatcttgg cacttgttgc agctgctagc cttatgtatt
     2281 actctgaagt agcagtggca aaaacaaaca agattaaaag taatattatt gatggtacta
     2341 ttcgcgttgc aggtggcgac agtggtagtg gtggtagtag tcttggagct agtcctaatt
     2401 ctataacctc aactgagcta aaggcatttt cacactgtgt tactacagca aataaagtcc
     2461 ggggtcttag cagtacgata gttgcagatt gccttgatac agctaaaggc aacgcgcctg
     2521 gcagtaattc ggctacaaca ttttcttcta gtactgcttc tcctgaggct accacatcta
     2581 atggaagtat caataatatc acttcagcca atactaaatc tctaacctca actgagctaa
     2641 aatcattctc agactgtgtg gtttcagcac gtaaattgca agctctaagt catgctgtag
     2701 ttagtggatg tcttgaggaa gctgaaggca ttatgcattg agatataata ctaaggccaa
     2761 tgcagatact ctatcaagag tgcttgtaat tgtctacaca tatggctatc cgtgatttca
     2821 tatttcacat tctattctat atactaagtc cttagttttt tagattgatt gcaagtttta
     2881 ttagattgta gaacaatagt tcatttattg attgtaaatg tatcttttat tgtcccatca
     2941 ttagcgataa agcttcctac caagctccta tctgaaacgt ctacattcag
//
LOCUS       DASQSJ010000107         3459 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_490640, whole genome shotgun sequence.
ACCESSION   DASQSJ010000107 DASQSJ010000000
VERSION     DASQSJ010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3459
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490640"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(341..706)
                     /locus_tag="VE223_02235"
     CDS             complement(341..706)
                     /locus_tag="VE223_02235"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HZC20439.1"
                     /translation="MEQNQIHFRAEFTIEVRKIEEYKKLIQEMSRTVQANEPDTINYQ
                     FYLNKDQTKCVVHETYVNSDAALAHNNGVASRTILPRIFRLAKISRFDVYGNPNEELQ
                     KLLVSFGAETFNLFTGFSR"
     gene            1265..2230
                     /locus_tag="VE223_02240"
     CDS             1265..2230
                     /locus_tag="VE223_02240"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZC20440.1"
                     /translation="MNLIDIFHVRKAYGSFQAVDDVSLSVKKGEVFSLLGPNGAGKTT
                     LVEILEGVRKKDSGDVKVLGYDPWQNSDSLHRRVGVIPQRFTFVDKSTPREAMKYYAK
                     IFGVRVDTDRLLKEVLLEDSANVLFENLSGGQKQKMGLALSLVNSPELLFLDEPTTGL
                     DPNARRAVWDVIRKFKTSGKTIILTTHYLEEAEHLSDRVAIMDHGRIIAIGTSDEIIS
                     SFGSGERLDVRGGEDLAEYLKNKTKLNVTYKGTGLISISLDRKHDAYIALAAMEESGL
                     PWSDFQTKKDSLEDVFVKLVGGFLEEHGEVKKVKEDDDKHPKNSS"
     gene            2199..3302
                     /locus_tag="VE223_02245"
     CDS             2199..3302
                     /locus_tag="VE223_02245"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20441.1"
                     /translation="MMINIPRIVADFFFFGRVYLRDRVGLFFAIIFPVIFIIIFGAIF
                     LGGSSGPTKLYVQNHDSGPISEPFITSLKSISSNNLQLVPVSNSENFSSYLAAHSYSD
                     GLLIPSNFSADFMTGKSTKVTVYGNPDTLSSTVVSGIVNAVVNEFNLRRAGGSPVLGM
                     YQTTVKGQSFTYIDFLIPGLIGFSILTSPMFSLVNMSSLYKKLKLFKQLSLTPLSKGE
                     WLISKVLWYIFLGIISFVLMVGVGAFGFGAHVFLSAWLIPFLILGPMFFASLGMVIGI
                     VAKSVETSSIIAQVITFPMMFLSGTFFPISYMPTYIQYIAHALPLFYVIEGLNAVMIY
                     NNYGQAAVDIVIVTILALGMLVAAVKLFKWRED"
BASE COUNT          967 a          676 c          736 g         1080 t
ORIGIN      
        1 actgcaaata aaactagtta gtatatagtt ggtggtatgt catatagtaa aagaggcgtg
       61 atacatgact cttaattttg agaggcacct aaatgatttg gatgttgaat ttgtagaatt
      121 gaacttgatg gaggaaagat catttaatgt tgtcttaaat acgcattaga aaccccagac
      181 tccattcatc tcctaggtcg ataagccttt tctcgcttct aaaataagag gttcaagtaa
      241 tagatccagg caccggagac aagttttcat ctttagattt gttacactgc caacttcgtt
      301 tatctataga atagttttgg cctaaagcaa taccttactg tcaacgactg aatccagtaa
      361 atagattaaa agtctctgca ccaaaactta ctagcaactt ttgtaattcc tcgttgggat
      421 tgccgtaaac atcaaatctg cttatcttag caagcctgaa aatcctagga agtattgttc
      481 gtgatgcaac gccattattg tgagcaagtg cagcatctga atttacgtat gtttcatgta
      541 caacacactt tgtctgatct ttatttaggt aaaactgata atttatggtg tctggctcgt
      601 tagcttgaac cgtcctgctc atttcctgta tcagtttctt gtattcttct atttttctta
      661 cttctatagt aaattccgct ctgaaatgta tctgattttg ctccatcgtt aggatacttg
      721 tagaatcgct agttaaatgt ataatttgta tttacatttc tgataatatg gagacataca
      781 tggaacttta taatgcgaac atgatcatca tatgggtttt ataataatac tgattagcaa
      841 tacaggtctg gcctattgta actctcaagt attgtcattg tggtcgtcgt atttgctatt
      901 acaacaagaa tatgtacatc acacaaggtg taacttgcca tgtcaaccgt tgattccaga
      961 agatcattta ggtgatggcc tgtctgaacc attataaaca aagcaaaaag gtactcgatt
     1021 caattaataa caatatagtc cttcttacaa ctactactaa tgacgatgac aacacttgta
     1081 gctgcaatgc aggattcact tctcatactt gagtattcaa atgatgggtg gaagaagact
     1141 cataaacttt cgaaaggtac ttctcctcag tacatcgcat ttgatactag cctttcaagt
     1201 ctgaattgct tgatagtgtc cttcctaatt attcaattga attgcactta gggacattgt
     1261 tgccttgaat ctgatagata tctttcacgt aaggaaggca tatggctcgt ttcaagctgt
     1321 cgatgatgtt tcactctcag tgaaaaaggg tgaggttttt tctctcctgg gtccaaatgg
     1381 agctggaaag actactctcg tagaaatact ggaaggcgtc agaaagaaag atagtggcga
     1441 tgtgaaggtt cttgggtatg acccttggca aaacagtgac tcgttacacc ggcgagttgg
     1501 agtcataccc cagcgtttta ccttcgtaga caagtcaact ccaagggagg ctatgaaata
     1561 ctatgcaaag atctttggtg ttagagtcga cacggataga ctactgaaag aggttttgct
     1621 cgaagactct gccaatgttt tgtttgagaa cctctcggga ggtcaaaagc agaagatggg
     1681 attagccctc tctctagtga attccccaga gctcctcttc ctagacgaac ctactacagg
     1741 ccttgatccg aatgcaaggc gggctgtttg ggatgtaata agaaaattca agacaagcgg
     1801 taagactatc atactcacaa cacactatct ggaggaagca gagcatctct cagatcgtgt
     1861 tgcgatcatg gatcatggtc gaataattgc gattgggaca agcgatgaaa tcatatcttc
     1921 cttcggatcg ggcgagcgcc tagatgtgcg cgggggtgag gatttggcag aatacctcaa
     1981 gaacaagact aagctcaatg taacctacaa gggaactgga ttgatcagta tatcacttga
     2041 tcggaaacat gatgcttaca ttgctttagc tgcaatggaa gaatcgggtc ttccctggag
     2101 cgatttccaa acaaagaagg atagcttgga ggacgtcttc gtcaaactgg tgggtggctt
     2161 tttggaggag catggagagg taaagaaggt gaaagaagat gatgataaac atcccaagaa
     2221 tagtagctga tttcttcttt tttggccgtg tatatttgag agatagggtc gggttgttct
     2281 ttgcaatcat atttccagtg atattcataa tcatatttgg cgccatcttt ttaggaggat
     2341 cttccgggcc cacaaaactc tatgtgcaga accatgacag cggtccgatt tctgaaccgt
     2401 ttatcacctc tttgaagagc ataagtagta ataaccttca gcttgttcca gtcagtaatt
     2461 cagaaaattt ctcttcttat cttgctgctc attcttactc tgacggtctc ttaatacctt
     2521 caaacttctc tgcagatttt atgacaggaa agagcacaaa ggtgaccgtt tatgggaatc
     2581 cagatacatt atccagcaca gtggtgagtg gtatcgtcaa cgctgtcgta aacgagttta
     2641 acctcaggcg tgctggtggc tctcccgtgc ttggcatgta tcaaactacg gtgaaaggac
     2701 aatccttcac atacattgac tttttgatcc ctggtttaat cggattttcc attctgacca
     2761 gtccaatgtt ctcgcttgtc aatatgtcct cgttatacaa gaaactcaaa ctcttcaagc
     2821 aactttcact tacgcctcta tccaagggtg agtggcttat ctcaaaggta ctttggtata
     2881 tttttctagg cattatttct tttgtactga tggttggtgt gggtgcattt ggttttgggg
     2941 cgcacgtctt tttatcagcc tggctcatcc cgttccttat tctagggccc atgttctttg
     3001 cttcactggg gatggtcatt ggaattgtgg caaagagtgt agagacctcg agtatcattg
     3061 cacaagtcat aacctttccg atgatgttcc tatcaggaac tttctttcca ataagttaca
     3121 tgccgacata cattcagtat attgctcatg ctcttcctct attctacgtt atcgaggggc
     3181 tcaacgcagt gatgatctac aacaactacg gccaggcggc agtcgatata gtcatcgtta
     3241 caatacttgc gttagggatg ctagttgctg ctgtcaagct gttcaaatgg cgagaagatt
     3301 agaagataat atgtacatag atagagagct cgtcttgcct atcatatgtt cgatttcagg
     3361 tctaccatgt gtataagatg atcgtacata gacataggag ccggcattag ttctgcttta
     3421 ttttagaggg aaaatctgac ccaaattagt atgccatta
//
LOCUS       DASQSJ010000108         2455 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_92724, whole genome shotgun sequence.
ACCESSION   DASQSJ010000108 DASQSJ010000000
VERSION     DASQSJ010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2455)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2455)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2455
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92724"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="VE223_02250"
     CDS             complement(<1..235)
                     /locus_tag="VE223_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20442.1"
                     /translation="MAIHIVFVKMQVGIDDLAIYVPKLYVDYKDFAEARGIAPQKLEY
                     GIGIKKMALVDTNQDPACMAANACLKLMQRNHLQ"
     gene            complement(365..1492)
                     /gene="mqnC"
                     /locus_tag="VE223_02255"
     CDS             complement(365..1492)
                     /gene="mqnC"
                     /locus_tag="VE223_02255"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HZC20443.1"
                     /translation="MQNSLLVRDLISKSDVADILDAVLCGRHLGLNECIRLIKSDDAY
                     PIGLVGSILRQKLYGNTATFVNNIILNYTNICITYCKFCAFYRPPGHEQSYTLSIDEI
                     VRRVAVSRDVVGITQVLIQGGHNPNLKIEYYEEAFKAIKEKCPEVGIHGLSASEIDMI
                     ARVEKSSIKEVLSRLKAAGLDSLPGAGAEILDDHVKAEISPLKIKSHEWIRIMELAHE
                     IGIKSSSTMMYGTVETEEQRARHIMKIAQLQEKTGGFMAFIPWSFEPNKTQIQSEGLI
                     KYPTGGLQLLKMIAITRIIYYGLIDHIQSSWLTNGVGMAQLALNYGADDFGGTLVGEE
                     VVSATGARSTELTAHKIISAIKQIGFKAAERDNLYQIIKYY"
     gene            1583..>2455
                     /locus_tag="VE223_02260"
     CDS             1583..>2455
                     /locus_tag="VE223_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HZC20444.1"
                     /translation="MIINLLKSIAGETPSLEKALAGEELSYRDGVQLLKEENLFLLGL
                     VADKIRKNLKGNTVTFVSSYYLNYTNVCAASCPLCAFYRKGNEPDAYTLTTEQIITRA
                     RMAIKEMGSTELHIVGGFHPKLDLDYYENIIKAIKVEFPNVTIKALTPAEIFFIARLT
                     RNSVKEVLLRLKTAGLDALPGGGAEIFAPESRNLIVRGKCSGEEWLDTAHQAHDLGLK
                     SNCTMLFGHVEKPEHIVDHILKIRELHKKTKGFTTFIPLKFSLDNTELEKQGVITRES
                     PSTYDLRIIAVSRLL"
BASE COUNT          748 a          468 c          444 g          795 t
ORIGIN      
        1 gttgtaaatg atttctttgc attaatttca agcaggcgtt agcggccata catgctggat
       61 cttgattggt atcaactaag gccatctttt ttatacctat gccatactct agcttctgcg
      121 gagcaatccc tcttgcctca gcaaaatcct tatagtcaac gtaaagttta ggcacgtata
      181 tagctaagtc gtcaatccct acttgcattt ttacaaagac tatatgtata gccatttaaa
      241 ggtatttctg ggttagactt ggttaaggct ataattagga gggacaacaa aacagtttaa
      301 aaatgtttgc cattattgga aatgaaagtg agttttatac atctttagag cattttatag
      361 tcgattaata atattttata atctgatata ggttgtctct ttctgcggcc ttaaaaccaa
      421 tctgtttaat agcagatata attttatgtg ccgttaactc agtcgatcta gcacccgtag
      481 cgctaactac ttcttcacca actagagtac caccaaaatc atcagctcca taattaagtg
      541 ccagctgagc cataccgact ccatttgtta accaagatga ctggatatgg tcaatcaaac
      601 catagtagat tattcttgta attgctatca tcttcaatag ttgcaatcct ccagtgggat
      661 attttatcag gccctctgat tgaatctgag ttttgtttgg ttcaaaactc caaggaataa
      721 atgccataaa cccccctgtt ttttcttgta attgcgcaat tttcataata tgtcgtgctc
      781 gttgttcttc agtttcaacc gttccataca tcatggttga agaagacttt ataccaatct
      841 cgtgtgcgag ttccattatt cgaatccatt cgtggctctt aattttaagt gggctgattt
      901 ctgcttttac atggtcatca agaatttcag cacctgcacc aggaagagag tctagtccgg
      961 ctgcttttag cctcgagaga acctctttta tactactttt ttcaactctt gcaatcatat
     1021 caatttcaga tgccgaaagt ccatgaattc ctacttcggg acatttttcc tttattgcct
     1081 taaaagcttc ttcataatat tcgattttta aatttggatt atgaccgccc tgaattagta
     1141 cctgtgtaat accaactaca tccctagata ctgctacgcg tcgcactatc tcgtctatgg
     1201 atagtgtata agattgttca tgtccaggtg gcctatagaa tgcacagaac ttgcaataag
     1261 tgatacagat atttgtatag ttcaagataa tattattaac aaacgtagca gtatttccat
     1321 agagtttctg tcttagtata ctcccaacaa gtcctatcgg gtaggcatca tcagacttga
     1381 taagcctgat gcactcattt agcccaagat gtcgaccaca caatacggca tctaaaatgt
     1441 cagcaacatc agatttgctg atcaagtctc gtactaacag actgttttgc aatagtaaca
     1501 taatttctga actatcaata gtatttattc tttacaaatc ataggaatct gccagcacat
     1561 attttatatt aacttcaaac atatgataat taacttgctc aaaagtattg cgggggaaac
     1621 accgtcatta gaaaaagcac tcgcaggcga agaattatcg tatcgtgatg gagtccagtt
     1681 attaaaggaa gagaatttat ttttgttagg tcttgtggcg gataagattc gtaagaatct
     1741 taaaggaaat actgttactt ttgtttcttc ttattatcta aactatacca atgtttgtgc
     1801 tgccagttgt cctttgtgtg cattttacag aaaaggcaac gaacccgatg cttatacctt
     1861 aactaccgaa cagatcataa caagagcaag gatggcaata aaggaaatgg ggtcaactga
     1921 acttcacata gttggaggtt ttcatccaaa gctagatctc gattattatg agaacattat
     1981 aaaggcaata aaggtagaat tccctaatgt tacaattaaa gccctaactc ctgcggaaat
     2041 tttctttatt gctcgactaa ctagaaactc cgtcaaagaa gtcttactaa ggttaaagac
     2101 tgccggatta gatgctcttc caggtggtgg agctgagatc tttgctccag agtctagaaa
     2161 tttgattgtc agaggaaagt gttctggcga agagtggctt gatactgctc atcaggcgca
     2221 tgacttggga ttaaagagca attgcacaat gcttttcggt catgtagaaa aacccgagca
     2281 tattgtagat catattttaa agattagaga acttcacaag aaaacaaagg gttttactac
     2341 ttttattccc ttaaagttta gtctagataa tacagagtta gaaaagcaag gtgtaatcac
     2401 cagagaaagt ccttcaacat atgatttgag aattattgca gtatcaagat tattg
//
LOCUS       DASQSJ010000109         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_450951, whole genome shotgun sequence.
ACCESSION   DASQSJ010000109 DASQSJ010000000
VERSION     DASQSJ010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450951"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2073)
                     /gene="purL"
                     /locus_tag="VE223_02265"
     CDS             complement(<1..2073)
                     /gene="purL"
                     /locus_tag="VE223_02265"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HZC20445.1"
                     /translation="MPILMMLTDNEVDYLKYKLQREPTAVELEIIGAQWSEHCSYKSS
                     KKYIRSLPTIGPRVVTGIANDLGILDVGDGYVVTVHIESHNHPSAVEPYGGAATGVGG
                     IIRDIISMGSRPIAILDSLRFAPIAVEEKTKVKSKWLFKNVVRGIAEYGNCIGIPTVG
                     GEVEFDPCFEDYCLVDVASVGLARREQVIVNKVDNDDLLILAGGPTGRDGIHGASFAS
                     AILEGENRSAVQIPDPFLEKLLVDATVEATERGCIKAIKDLGGGGLSCCLSEASDNLK
                     KGFDVELTKVHLRHNDMSPAEIMISESQERMLYITDNSKVQTIRSIFDKYDITHATIG
                     KVIESQNVVIRFDGKIVAALPSHLFAHAPLLDRETEKPEYLSKLKKFFDIRQDNNINE
                     ILFQLLSNPSIANKKWVYEQYDHEVGLRTVLKPGCGDASVLRIGNGKFISVKLDGNSK
                     HCYLDPYQGTLGVLSEACRNVICTGAQPIGIIDHLQFGSPDDPSIFWTFVQAINAVAD
                     FCKYMDIPVVGGKVSFYNETAKGAIKPSPVIGSLGLIENQSSIIDLSLKPNDFIFVIG
                     STSDEMGGSEYYESYHHICGGVVPKLNLTVDKLNSKAVLQLISKNLVNCVHDCSKGGV
                     AVAVCEMAIAGNVGLDMNVNLIPNSCSRLDTLLFSESQSRYLIGTKQPNKVQKILSEF
                     KELRFAPIG"
     gene            complement(2103..2819)
                     /gene="purQ"
                     /locus_tag="VE223_02270"
     CDS             complement(2103..2819)
                     /gene="purQ"
                     /locus_tag="VE223_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HZC20446.1"
                     /translation="MQSSMFDRRAPKIGIIAFPGSNCDRDVHYVLNNIIKVQADLIWH
                     KKNNISHYGAIIIPGGFTYGDRLRAGLIAAHSPIIGEIKKMAKEGVPILGICNGFQIL
                     VESCLLPGALIRNTSLNFVCRWTTVQVHNNKTPFTIGFSKHQKVSIPIAHGEGRYLVD
                     TRGLGYLKKKNQIVLRYVNDDPNGSMNLVAAVCNEEGNVMGMMPHPERASENILCPTK
                     SNNSAILIFHSLVSYLLNEQ"
BASE COUNT          878 a          633 c          553 g          943 t
ORIGIN      
        1 cccaatcgga gcaaaacgga gttctttgaa ttctgaaagt attttctgga ccttgtttgg
       61 ttgcttggtt ccgataagat aacgagattg agattctgaa aagagaagag tatctaatct
      121 agagcaagag ttaggaatca aattaacatt catatctaat cccacatttc cagctattgc
      181 catttcgcac actgccacag cgaccccacc cttcgaacaa tcatgaacac aattaaccag
      241 attttttgag attagttgca atacagcctt tgaattaagc ttatcaacgg tcaagtttaa
      301 ttttggtacg accccgccgc atatatgatg atatgattcg tagtattcag aaccacccat
      361 ttcatctgag gttgatccta ttacaaaaat aaagtcatta ggtttaagcg atagatcaat
      421 gatggatgac tgattctcaa tcaaccctaa cgatcctatg acaggagaag gctttatggc
      481 tcccttggcg gtctcgttat aaaagctcac cttacctcct actacaggaa tatccatgta
      541 cttgcaaaaa tcagctactg catttattgc ttggacaaaa gtccaaaata tgcttggatc
      601 atcgggactc ccaaattgca aatgatctat tatccctatt ggttgggcac cagtacagat
      661 gacatttctg catgcctctg acagaacacc tagcgttcct tgataaggat ccaagtaaca
      721 gtgtttggag tttccatcta acttaactga aatgaatttg ccattgccaa ttcttaggac
      781 acttgcatcg ccgcaaccag gttttagcac tgtccgtaaa ccaacttcat ggtcatattg
      841 ctcataaacc catttcttat tagcaatact gggattagat aagagttgaa ataaaatctc
      901 attaatgtta ttatcttgtc gtatatcaaa aaatttcttt aatttactta aatactcggg
      961 tttttcagtt tctctatcca agagaggtgc atgggcaaag aggtgggacg gcaatgcggc
     1021 aacaatcttc ccgtcgaatc gaatcactac attttgactt tctatgactt taccaattgt
     1081 agcatgtgtg atgtcatact tatcgaatat ggatcttatt gtttgcactt ttgaattgtc
     1141 tgttatatac agcattcttt cctgtgattc agatatcatt atttcggctg gtgacatatc
     1201 gttatgcctt agatgtactt tggtcaattc tacatcaaag ccctttttca aattatcaga
     1261 tgcttccgac aggcaacaag agagtccacc tcctcctaaa tcttttattg cctttatgca
     1321 tcctcgttct gttgcttcaa ctgtcgcatc aaccagtaac ttttccaaaa atggatccgg
     1381 gatttgtact gcagatctat tctctccttc taagatagct gacgcaaatg atgccccgtg
     1441 aattccatct ctgccagtag gcccaccagc taatatgagt aaatcatcgt tatcaacctt
     1501 gtttacgata acttgttctc ttcgagccag acctacagag gcaacatcta caagacaata
     1561 atcctcaaaa catggatcaa attctacttc gcctcctact gtgggtatac ctatgcagtt
     1621 accatattct gcgatgccgc gtacaacatt tttgaaaagc cattttgact ttacttttgt
     1681 cttctcttct accgcaatag gtgcaaatct caatgaatcg aggatcgcaa tggggcgact
     1741 gcccatagag attatatctc ttatgatacc tccaacacca gtggcagcgc cgccgtaggg
     1801 ttcgacagcg gaaggatgat tgtgactttc tatgtggacg gtgacaacgt atccatctcc
     1861 aacgtctaat attcctaaat catttgctat gccggttact actcgaggtc cgatagtagg
     1921 caatgatctt atgtattttt tggaggattt atatgaacag tgctcagacc attgtgcacc
     1981 gataatctct aattcaaccg cggttggttc acgttgtaat ttatacttca gatagtcaac
     2041 ttcgttgtca gtcagcatca tgagaatggg caaatggtgt tatacttaag catattataa
     2101 tgtcattgct cgtttagcaa gtaagacacg agtgaatgaa atatcaatat tgcactattg
     2161 ttactttttg taggacaaag aatattttca ctagcccttt caggatgcgg catcatgccc
     2221 attacgtttc cttcttcatt acagacagcg gcgactaggt tcatagatcc attcggatca
     2281 tcattgacat atctaaggac aatttggttc tttttcttta gatatcctaa acctctggta
     2341 tcgactagat atcttccttc accatgggca attggaatag aaaccttttg atgttttgaa
     2401 aatccaatcg taaagggtgt cttattgtta tgaacctgaa cagttgtcca tcgacataca
     2461 aaattaagag aggtattcct aattagagcc ccggggagca gacatgattc aacaagtatc
     2521 tggaaaccat tacagatacc tagtataggt accccttcct ttgccatctt tttaatctca
     2581 ccaataattg gactatgggc agcgatgagg ccagcgcgaa ggcggtcgcc gtacgtaaag
     2641 cctcctggaa ttatgatagc accatagtga gagatattat ttttcttgtg ccaaattaga
     2701 tcagcttgta ccttgataat attgtttaag acataatgaa catcacgatc gcaattactg
     2761 ccagggaacg ctatgatacc aatctttgga gcccttcgat cgaacattga actttgcatt
     2821 gttatacttc tatgcttaaa tattaacaat agattgcata tatatgatgt gtcgaaattg
     2881 agaatggaga aacaccaaaa gccttacctt agctaatcct gagcttgaga agttaattac
     2941 aaagttttta ttctgaattg aaaaattaga agcaatggtt gaggcagtta gcaatatcat
     3001 gacgaag
//
LOCUS       DASQSJ010000110         2138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_213130, whole genome shotgun sequence.
ACCESSION   DASQSJ010000110 DASQSJ010000000
VERSION     DASQSJ010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2138
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213130"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VE223_02275"
     CDS             complement(<1..280)
                     /locus_tag="VE223_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20447.1"
                     /translation="MNKQQEGEQQPKQVNHNNDEAKVLEYGDIYFFYRPKVRSDEVKG
                     IEDVRRFFMVTAPEESQLYRLFVIGKKSLPEVRKTEARASERYWARVGG"
     gene            710..958
                     /locus_tag="VE223_02280"
     CDS             710..958
                     /locus_tag="VE223_02280"
                     /inference="COORDINATES: protein motif:HMM:NF013462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein L13e"
                     /protein_id="HZC20448.1"
                     /translation="MKIQINKPIIKRQIRGTTLVRNGRGFSKSELKEVGIVDIRMAKN
                     KSIPIDVLRKTTIAENVEQLRPIAKDILSLRKKAENGS"
     gene            1366..2082
                     /locus_tag="VE223_02285"
     CDS             1366..2082
                     /locus_tag="VE223_02285"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HZC20449.1"
                     /translation="MKAIIFDMDGVLVDAMPFHYEAMKTAIKELTNIDLDKRTFYLLE
                     GMPVAEMALEIFKLKGYPGHDSKKNISKHQEYIIQRSEQVAKRKKEIFREMNIMPKPY
                     DGVIELIINDLTECSKAVVSGAAKEEVDAIIKHNFGKDKFSVIMNGDEFEGKGKPDPA
                     PFKVALQRLNADNNEALVVENSPLGVKAANNAAIQSIVTLNTSPLSMDDFKTLISEDR
                     IFKDTISAGGFLRKCCIDDS"
BASE COUNT          722 a          358 c          400 g          658 t
ORIGIN      
        1 tgccaccaac tctggcccaa tatctttctg atgctctggc ctccgttttt ctcacttcag
       61 gaagtgattt tttacctata acaaaaagcc tgtatagctg gctctcttct ggtgcagtta
      121 ccataaagaa tcttcttaca tcttcaatgc cttttacttc atcagatcta acttttggtc
      181 gatagaagaa gtaaatatct ccatactcta ggaccttagc ttcatcgtta ttgtggttaa
      241 cctgttttgg ttgttgttct ccttcttgtt gtttattcat atctaaacat ggccctccta
      301 atttattaaa agtgacaagt tacattcttt acaaaaatag tatagtttat cagaataata
      361 agatagcacc attatatcat agcagcgagg acattctatt tctgtctcaa tgtctgggcg
      421 ttccctttca ctttcagttt gcaatatctg ctgtttctgt aaagttagat tcctgctcat
      481 actaaaagtc atattgttat catcttatta atatcctgaa acactgtttg ggatggggga
      541 gagaggaggg tagtagcatg gtcttttatt tgctggttag aaatacctcg attcatatca
      601 acaattatgg cagtgcctcc tagctttaac cctctatata ctcaatccat cgcagtctag
      661 atacttggat tagctaaatt tttaaattat taattattta tatgatttca tgaaaattca
      721 gataaataaa ccaattatca aacgtcaaat aagaggtaca acgttggtta gaaatggcag
      781 aggattttca aagtcagaat taaaagaagt ggggatagtt gatatcagga tggcaaagaa
      841 caagagtata ccaattgatg tcttaaggaa aacaactatt gcagagaatg ttgagcaatt
      901 aagacctatt gcaaaagata ttttgagttt gagaaaaaaa gcagaaaatg gaagttaaca
      961 ctctattttc aaatacctgg cagttctcca aaatgcgctc ctcatgtacg gatttgggaa
     1021 taactaccag attatgctgc aaactccatc gtatcagtat cttttagcca catctaagag
     1081 tcggtaccca atattcaatg catatttaac catacgttag gttgtcctgc cagacgatga
     1141 ttgccacagg cataggccga gcccaggaat ctcaactcca atattgggtc tgacacggga
     1201 cggtatggtc catggcatac tgcatctgct atcatgacat cagggctatc atcagttttt
     1261 gaatcccaaa aattagcaaa aaagaattca aatattttgg actattttca gtaattagat
     1321 gatcagtgga ttattattaa gtttttttta ttttctctat agtgcatgaa agcaataatt
     1381 tttgatatgg atggtgtgtt agtagatgca atgccatttc actacgaagc aatgaagaca
     1441 gcaattaagg aactaactaa tattgatctg gataaaagga cattttatct acttgaagga
     1501 atgcctgttg cagaaatggc attagagata ttcaaactta aaggatatcc tggtcatgac
     1561 agcaagaaaa acatatctaa acatcaggaa tacatcattc aaagatcaga acaggtagca
     1621 aaaagaaaaa aagaaatatt cagagagatg aacataatgc caaaaccata tgatggtgta
     1681 atagaattaa taattaatga tttaacagag tgttcaaagg ctgttgtaag tggtgcagca
     1741 aaggaagagg ttgatgcaat tatcaaacac aattttggaa aagataaatt tagtgtaata
     1801 atgaatggag atgagtttga aggaaaagga aaacctgatc ctgcaccatt taaagtagca
     1861 ttacaaaggc taaatgcaga caataatgaa gcactagtag tagagaattc gccactgggg
     1921 gtaaaagcgg ctaacaacgc agctattcaa tctattgtta cgttgaatac atcgccactt
     1981 tcaatggatg attttaaaac gttaatatct gaagatagaa tattcaaaga caccatatca
     2041 gcaggaggat ttctaagaaa atgctgcatt gatgatagtt aaagaagctg tctgaaggta
     2101 gagacgactg ttcacaataa gccttcagcg ttgttttt
//
LOCUS       DASQSJ010000111         3339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_451696, whole genome shotgun sequence.
ACCESSION   DASQSJ010000111 DASQSJ010000000
VERSION     DASQSJ010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451696"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..235
                     /locus_tag="VE223_02290"
     CDS             <1..235
                     /locus_tag="VE223_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20450.1"
                     /translation="DEVFAKHLPFIEKIAIDQNRVILKDNKKNRIAEVLMNNGELQCL
                     LDDGRSDCVHVGFVYSLPELYGIISNKGIKVPS"
     gene            complement(1610..1927)
                     /locus_tag="VE223_02295"
     CDS             complement(1610..1927)
                     /locus_tag="VE223_02295"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HZC20451.1"
                     /translation="MYGQHTQQTCPLYNKESREYLLSRTQDMKKNAQKYGVKVLHQFH
                     SGLEHRFLWVVEVDNAHLIEHLMTRTAGRFNTIKIVPLVTFQGVIERCKQIEGTFFSD
                     AAE"
     gene            complement(2406..2552)
                     /locus_tag="VE223_02300"
     CDS             complement(2406..2552)
                     /locus_tag="VE223_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20452.1"
                     /translation="MILLRMYGRIQEDRVMEMKKWAGKVKRTIKEEGKGGGRKSINLA
                     IVSA"
     gene            2626..2946
                     /locus_tag="VE223_02305"
     CDS             2626..2946
                     /locus_tag="VE223_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20453.1"
                     /translation="MSILLMIKRKDKSKLRSYSVSDAKRLESGYIVVKGTIASVSTQD
                     LNRAVTIRDVLCMVARYLILLFCCHLDVSIQRYAPIVKALHTQFRKKTGSINNHGVIL
                     INLS"
     gene            complement(2943..>3339)
                     /locus_tag="VE223_02310"
     CDS             complement(2943..>3339)
                     /locus_tag="VE223_02310"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HZC20454.1"
                     /translation="RKRIGDHKHYPIFAVCNPSGKNPGNVWEISTKAHYGNEHFAIFP
                     EDLIARIVNFATKRGDWILDPFTGRGTTGIVAALLGRNFTGVDLYPENVIKAEKNISD
                     AIKGKLTVKLGDQIEDVPLQNVPFPRDIS"
BASE COUNT         1000 a          624 c          565 g         1150 t
ORIGIN      
        1 agatgaagta tttgccaaac acttaccgtt tatagagaag atagcaatag atcagaatag
       61 agttatatta aaagataata aaaaaaatag aattgcagag gtattgatga ataatggaga
      121 attgcaatgt cttttagatg atgggagatc agactgtgtt catgtaggtt ttgtgtattc
      181 ccttccagaa ctatatggta ttatcagcaa caagggaatc aaggttccta gctgagcatt
      241 atagtatagt attcttttat tgttggttta tggtaatgat ttcttatgcc agagtatctc
      301 ttacgtaacc atgtagcata tccttattct aatttttctt ccatcaatgg tcttattgga
      361 actttgactt ttcttacttt gagtttattg agaattcttt agaataacaa tatccaataa
      421 cccatctgag atattgcgtc tggtgcagct ttgtaccctt gtcccaagta tttgccattg
      481 gcaactatac acatagtcat ctttgttaga ctattttcac gtccatcatc tatagaaatc
      541 tcacatagat tgcttcgtat gttggcatag ttgcaataat acttgattgt agatacaata
      601 cggctgttga ctttgtctct tatctttttt gatctatcaa taatctgaaa tgctgcaact
      661 tcaactatcc ctgcagcatt aatagattct agatgtggta gtagttattg ttgatgagtg
      721 attattgctg atgaagttca tctagactgt aggaatgcat aattattctg tcatacgtcc
      781 aaacaagaaa taataaatga aagtgaatat tacttaatcc actttgtctt ttgcatcttt
      841 gcctgcatct tcaattttgc ttcctgtttt ctttgcgcca gatttcattt tatcgcctgc
      901 atcttccaaa tcgtcttttg cttctgacat tgcagtagtc gtaaatatga cactatagta
      961 tataactata gatatacttg gttaggcaaa ttcattgcac tctatggatc agtttattta
     1021 agaacagcac taatcatact gacaacatct aaatcaggtt cactgtgatc tgactctgat
     1081 aaattagcac tgcttagatc tgatttatca tatcatttct tcatatcaat agacctacag
     1141 ttcaagacat atggatttaa agtcgtcttg ctcaaattca caattattta ctgatgagac
     1201 tctcactagc aaacaacatg tagtgttggt aggtcaaaat aactgcgatt actctatgat
     1261 tactctatga tcattacttt gggtgctaaa agtctcattc tgttggtagt catggaactg
     1321 ctcaataata tctactaaaa acagctacca tatcaaatgg ttattttatc atgtttgttt
     1381 atttattttc acaacttatc tatttgtctc taatctatct cataataaac aaaaaaatga
     1441 aaaatgggtc ggaaagatcg aataaatcag ttggaccaaa agaagagaac gtagatcctt
     1501 ggtcattgtg tattcatgca atcaaggcac caatgacaaa ggatagatat cagacaaggt
     1561 tagctaactg caacacctac ctcgttttga ttttgtattg tccaatcagc tattcagcag
     1621 catctgagaa gaatgttcct tctatttgct tacatctttc tattacgcct tgaaaagtta
     1681 ccaagggtac tatttttatt gtgttaaatc ttcctgcagt tctagtcatg agatgctcta
     1741 ttaaatgtgc attatctacc tccacaaccc aaagaaatct gtgttctagc ccagagtgaa
     1801 actgatgtaa gactttcact ccatactttt gcgcattttt cttcatatcc tgcgtccggc
     1861 tcaacaagta ctctctactc tctttattgt agagtgggca cgtttgttgg gtgtgttgtc
     1921 catatatccc atataatcct gtttatggtt tcattttaat actacatatg taaagtatag
     1981 tttataagtc ctgcgtaact aaattgatag ttagttactg agtagataga taggtagcgt
     2041 gcaaaagaaa tattgattga taaaaacaat gataactgct ctcatggata cagtctataa
     2101 catgccagag ctgaaatcat gtctaattga aactacgtct agaattattg gatagagatg
     2161 gacagtgcaa atcccagtaa aaaaagcgac aaaagagatt ataatggcta atgagtcatg
     2221 tagtaaaatc tgaaagtgta ctttgctttg aatcttgaag ctattaccat gtaagtatgg
     2281 tttgtcatat tcctcctgcc tgttctcctt atcctcatcc ttacttcaca cgacttctgg
     2341 caagtccacc atcttcttga atatatcggc agttcccgga ccaaaaccgg cataatgatt
     2401 attttttaag cagacactat tgcaagattg atactttttc ttcctcctcc ttttccttct
     2461 tccttgattg ttcttttaac tttacctgcc catttcttca tttccattac tctatcctct
     2521 tgtatccttc catacatcct aagcaatatc atatgaatat cgccagaaga ctcaaagtga
     2581 ggctcgatcg ataaatgagc aatgatgagg aggctaatac tagcaatgtc gatcctgtta
     2641 atgataaaaa gaaaagacaa gagtaaactg cgctcttatt cagtctcgga tgccaagcgt
     2701 ctagaatctg gatatattgt agtcaaagga acaattgcaa gcgtctcaac tcaagatctg
     2761 aatcgcgctg tgacaatcag agatgtgctt tgtatggtag ccaggtattt gatcctcctc
     2821 ttttgctgcc acctagacgt ctcgattcag agatatgccc caattgtaaa agcactgcat
     2881 actcagttta gaaagaaaac tgggtcaatt aataatcatg gagtaatact cattaatttg
     2941 agttaagata tatctctagg gaaggggacg ttctgtaacg gaacatcttc tatttggtct
     3001 cccaatttta cagtaagttt acccttgatg gcatctgaaa tattcttttc tgctttaatt
     3061 acattctctg gatataggtc tacacctgta aagttccttc cgagaagtgc agcaacaatt
     3121 ccagtggttc ctcttccagt aaaaggatca agaatccaat ctcctctttt cgtagcaaaa
     3181 ttaacaattc tggcaattag atcttcggga aatattgcga aatgctcatt tccataatgt
     3241 gccttagtag agatttccca aacatttcct gggtttttac cagatggatt acataccgca
     3301 aatatgggat agtgtttatg gtctcctatt cttttacgt
//
LOCUS       DASQSJ010000112         3019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_451746, whole genome shotgun sequence.
ACCESSION   DASQSJ010000112 DASQSJ010000000
VERSION     DASQSJ010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3019
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451746"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1350
                     /locus_tag="VE223_02315"
     CDS             <1..1350
                     /locus_tag="VE223_02315"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HZC20455.1"
                     /translation="SGGSGSSGILAASEYIIPIFLAMIFAAALFSSRTKVPYTMGLVG
                     IGIAISLFLGLARGQVGGLNIVNFNRLDPKLIIDFIIPPLIFEAMMKVDYYNEFKAIR
                     VSALSLATVGVVISTVVTGLLIMYLAHLPLPIAFTFAALIAPTDAAIVIEIFKRVKVP
                     GLLSTIMESEAALNDATGIIVFSSIITLASYSFSINGGGSSSSNIIIANNFNIVYEIG
                     RFAFVFFGGVVTGLGIAAATHRLHSLMNDPFSETALTIATVFGSVVLANSLGFSGLVA
                     VAVTGLYFGNATVKKEADMSVKVRTAVFNFWEMTAFFANSAAFLYLGISMNILRIAEN
                     IPSVALSFVIVLVARAVSAYPILAATNRLTREKIPVIWRHVVILGGMRGAISVALVAS
                     IPSTAGEFKTTLETITFGVVLLSLVIQYIALTKYVRKAFPKDTSTTANVDNANLPED"
     gene            1388..1564
                     /locus_tag="VE223_02320"
     CDS             1388..1564
                     /locus_tag="VE223_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20456.1"
                     /translation="MPAKHPCKMYVYSNPNSIIIRRKVLEPIQKITASSSNKKMGCYR
                     KNKFMTQQIQKTTA"
     gene            1500..1652
                     /locus_tag="VE223_02325"
                     /pseudo
     CDS             1500..1652
                     /locus_tag="VE223_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011020489.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            2163..2549
                     /gene="hsp14"
                     /locus_tag="VE223_02330"
     CDS             2163..2549
                     /gene="hsp14"
                     /locus_tag="VE223_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp14"
                     /protein_id="HZC20457.1"
                     /translation="MGFRQYMTKEIMKELGNRSREFYEFVMPAIDMVEDGNDLIVIID
                     LPGFAKKDIKLRIIENILSISASREPEENLGTIYYRHRPTRLDKKVVLPISINDDNRV
                     VGTAKYVDGIVTLRIPNQKSNNIPIA"
BASE COUNT          953 a          508 c          593 g          965 t
ORIGIN      
        1 agtggtggga gcggtagtag tggcatactc gctgcttctg agtatataat cccaatcttc
       61 ttggccatga tttttgccgc tgcgttgttt tcctctagaa ctaaagtccc atacaccatg
      121 ggattagtgg gaattgggat tgccatctca ttatttcttg gtcttgcaag aggacaagta
      181 ggaggattaa acatagtgaa ttttaatagg ttagacccaa agctgataat cgacttcatc
      241 ataccacctt tgatttttga agcgatgatg aaagttgatt attacaatga atttaaggct
      301 attcgagtct ctgcgttatc attagctacg gtgggtgttg ttatttctac tgttgttact
      361 ggcttattga taatgtattt agctcatcta cctcttccca ttgcatttac atttgcagct
      421 ttaattgcac ctactgatgc ggcaattgta attgaaatat tcaaaagagt aaaagtgcca
      481 ggtttgcttt ctaccataat ggaatctgag gccgccctta acgatgctac tggaatcatt
      541 gttttttcat ccattatcac attggcttct tattcgtttt ctattaatgg cggtggtagc
      601 tcttcttcaa atattattat cgctaacaat tttaatatcg tttatgaaat cggtcgcttt
      661 gcctttgttt tctttggtgg tgttgttaca ggattgggaa ttgctgctgc aacacatagg
      721 cttcattcgt tgatgaatga tcctttctca gagacggcat taactatcgc taccgtattt
      781 ggttcagttg tcttggcaaa ttctttaggt ttctcaggat tagttgcagt agcagtcacc
      841 ggtctatatt ttgggaatgc tactgtaaag aaagaggctg atatgagcgt gaaggtgcga
      901 acagctgttt ttaatttctg ggagatgaca gcattttttg caaactctgc tgccttccta
      961 tatcttggaa taagcatgaa tattctgagg atagctgaaa atattccctc agttgctctg
     1021 tcgtttgtta tagtattagt tgctagagct gtatctgcgt atcctatact tgctgctact
     1081 aacaggctta caagagaaaa aattcctgtt atatggaggc atgttgtcat ccttggagga
     1141 atgaggggag caatatccgt agcattggtt gcatcgatac catcaacagc aggggaattt
     1201 aaaaccactc ttgagacaat cacctttggt gtagtccttc tatctttggt cattcagtat
     1261 attgcgctta caaaatatgt cagaaaggcc ttccctaaag atacttccac cactgccaat
     1321 gttgataatg ctaatctgcc tgaagactag agtgattttc ttttcttccc cgtggccata
     1381 gcagaccatg cctgcaaagc atccatgcaa aatgtatgta tacagtaatc ctaactcaat
     1441 aataataaga agaaaggttt tagagcctat ccaaaaaatt acagcatcat catccaacaa
     1501 gaagatgggt tgttatagaa agaacaaatt catgacacaa cagattcaga aaactactgc
     1561 ttagatacga gaagaaagca gagaattacc ttggactagt acatctgtcg tgttgtatga
     1621 ttattgtata ccggaggata attttgggat aggttcttaa tagtatctta attttttatt
     1681 atctgcctcg gagaaatttt acttccaacg tatgacaatt tcatatactt ggtctcatgc
     1741 ttcaagtttt tagatcctcc acctggaaca aaaacacggg caacaccata atagagatat
     1801 tgtccttgat tcaatcagca agggtgagat tgaagagact cgtatggcat tacagagcgg
     1861 ccaatgggcg cttgtacacc tgaactactg gataagcatt agcagaactt ggcatgatta
     1921 atgctggaga cattatgaat ggaacagcaa tcagcacccc tgaaaaacgg taataaaatg
     1981 ctgatcaata cttttgcatt ttgagccgtg gtaaaatggt ttctgtaatg gaaggtagtg
     2041 actacgacta tcatccgaaa tattcattca tactaggtta gaatggaatt aatagattcc
     2101 agggaggagc atgcaagtat ttttaaaaga aaggatttat atcaatatta ggaagttaag
     2161 atatgggctt tagacagtat atgactaaag agatcatgaa agaattgggg aataggtcaa
     2221 gagaatttta tgaatttgtg atgccggcca tagatatggt agaagatgga aacgatttaa
     2281 ttgttataat tgatttgcca ggcttcgcaa agaaggacat caagcttaga ataatcgaaa
     2341 atatattatc aatcagtgca agtagagaac cagaagaaaa ccttggcaca atatattaca
     2401 gacatagacc tactcgatta gacaagaagg tggtactacc tatttcgatt aatgatgaca
     2461 atagagtggt tggaacagca aaatatgtag atggtatcgt aacattaaga attccaaatc
     2521 aaaaatcaaa taatattcca atagcataac aaaattaaca ctgctaacat attttctata
     2581 catattacta tcaaatagtt atttttgaat tctgacgaat acaaccagat agtaatagtg
     2641 ctgctgccga gaagactaaa tattttatgc tcgtgggaat gtagtagaca ctattacaat
     2701 tttatcacta aaacaaacaa catggttgat gctgtataaa ttgtacccga ccagtattag
     2761 ctatcgaaac tgaatcaata aatattataa taacggcttc agtgaattgc tttattataa
     2821 tattgaaagc attgtgaaat ttacattgtt atctttgttc ttaaaattca taaactttaa
     2881 tataagcaca gttcatagaa gcaaaaatga caacaccata gcatcgttca aaagtacagt
     2941 ttaaaccctg tagagagtat ggagttaata atgtttgtcg taatactaga ctattttcct
     3001 tgtttttata gatgtaaga
//
LOCUS       DASQSJ010000113         3097 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_404960, whole genome shotgun sequence.
ACCESSION   DASQSJ010000113 DASQSJ010000000
VERSION     DASQSJ010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3097
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404960"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(642..965)
                     /gene="rpsJ"
                     /locus_tag="VE223_02335"
     CDS             complement(642..965)
                     /gene="rpsJ"
                     /locus_tag="VE223_02335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HZC20458.1"
                     /translation="MNKNMPQEARIKLTSTNLLTLEGVCSEIRGIGEKNGIKLKGPHP
                     LPTKRMKVVTRKSPCGQGTNTWDKYELRIHRRVIDLGADDRAIRQLMRLKIPDDVYIE
                     VSLTQ"
     gene            complement(962..2278)
                     /gene="tuf"
                     /locus_tag="VE223_02340"
     CDS             complement(962..2278)
                     /gene="tuf"
                     /locus_tag="VE223_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor EF-1 subunit
                     alpha"
                     /protein_id="HZC20459.1"
                     /translation="MSASKKPHMNLVVVGHVDNGKSTIVGHLMVDMGVIDQRTIESYA
                     KESEATGKGDTFKYAWVLDSIKDERDRGITIDLAFQKFETQKFFYTLIDAPGHRDFIK
                     NMITGASEADVAILVVSVKPGETEAATEPGGQAREHAFLSRTLGVGQIVVALNKMDDV
                     GYSEARYKEVRDTVEKMLKLVGYNTSKVNFVPVSGWKGDNLVKKSENTPWYKGPTLAE
                     ALDTFEASEKPTGKPLRIPIQDVYSITGVGTVPVGRVETGTIKTNDKVIVMPAGVNGE
                     VKSIETHHTQMDSAEAGDNIGFNLRGVDRKAIKRGDVIGPVDKAPTVAKEFEAQIIVI
                     HHPTAMAPGYTPVLHAHTAQVAATLSEFIAKIDPKTGGTVEEKPKFLKTGDAAIVRIK
                     PVRPLAIETFKEFPEIGRFALRDMGTTIAAGVVKTITEKYDPSKSK"
     gene            complement(2441..2803)
                     /locus_tag="VE223_02345"
     CDS             complement(2441..2803)
                     /locus_tag="VE223_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HZC20460.1"
                     /translation="MNIQSENRPWGKFEKFHENQPCTVKLIYINSNSRLSLQFHKERW
                     EFWKIIKGNAGVEIDNELLTLKEGESVVIPKRAKHRVKALNGDCTILEISYGRFDEND
                     IERLEDDYQRTISNTPMS"
BASE COUNT          876 a          673 c          510 g         1038 t
ORIGIN      
        1 caccaccatc accatcaaca agtcctactc cagctataac accaccacca tcaccatcaa
       61 caagtcctac tccagctata acaccaccac catcaccatc aacaagtcct actccagcta
      121 taacacttcc agcacacact cttccaagcc aaactgctcc tgtaattctc aatctacagc
      181 ttaatacacc aacggctgca tatgttccgg gtgttggaaa aattatggca acagcgacac
      241 aatcattatc aggtggaact tgtaatagca gatcctatcc agtaaattcc aattttggtc
      301 cgatctgtct tacgtttgat tggtccactc tatcttaaac agcacaaata ttttattgaa
      361 tccttaccat actatattca tattattata cactgaaagg ttctgcttgc tgtcatgaat
      421 ggtaaatggt gttgctgtgt ccctatatta catcgttctg ttatcgtaca tttagagtac
      481 aaggatacac ataatgtaaa tgtggacaag cgatctcccg ggatatttat tagtgcttac
      541 aaacgccgcg gcaactggtc cgatggcaac tcatgggagt gacagtgtga acgttacata
      601 attttggact acaattaaac taaacagaat aatatattat attattgagt taaagatact
      661 tcaatataca catcgtcagg tatctttaat ctcattaact gtcttatggc cctatcatca
      721 gcaccaagat ctataactct tctgtgaatt cgaagttcgt atttatccca tgtgtttgtt
      781 ccctgtccac atggtgactt ccttgtaaca accttcatcc ttttagttgg aagaggatga
      841 ggacccttga gtttaattcc attcttctcc ccaattcccc taatctctga acatactccc
      901 tctagagtca atagattggt acttgtaagc tttattcgtg cttcttgtgg catattttta
      961 ttcacttact tttgcttgga tcatatttct ctgtgattgt cttgactacc cctgcggcaa
     1021 tcgtggtacc catatccctc agagcaaacc gtccaatttc cggaaattct ttgaatgttt
     1081 caattgctaa tggccgtact ggctttattc ttacaatagc tgcgtctcct gtcttcagga
     1141 atttgggttt ttcttcaacg gtacctcctg ttttaggatc aatctttgca atgaattctg
     1201 aaagtgttgc tgcgacctgg gctgtatgtg catgcaatac cggcgtatat cctggggcca
     1261 tagctgtagg atgatgaata acaataattt gcgcctcaaa ttcctttgct acagtgggag
     1321 ccttgtcgac tggaccaatg acatcaccgc gtttaatagc ctttctatcc acgcctctca
     1381 aattgaaacc aatattgtca ccagcttctg cactgtccat ttgtgtatga tgagtttcaa
     1441 ttgatttgac ttctccatta acgccagcag gcattactat gaccttatcg tttgtcttga
     1501 tcgtccctgt ttccactctg cctactggca ctgtaccaac accggtaatt gaataaacat
     1561 cttgaattgg aattctaagc ggtttgccag taggtttctc tgatgcttca aaggtgtcaa
     1621 gagcttcagc aagggtagga cctttatacc atggcgtatt ttcggatttt ttgactaggt
     1681 tatcaccctt ccaaccggaa acagggacaa aatttacttt gctcgtatta taaccaacca
     1741 atttcagcat tttctctact gtatctctta cttctttata ccgtgcctca gaatagccaa
     1801 catcgtccat cttgttaagt gcaactacga tctgtcctac accgagtgtc cttgaaagga
     1861 aagcatgctc tcttgcttga cctcctggtt ctgtagctgc ttctgtttct cctggtttaa
     1921 cagaaacaac aagaatagct acatctgcct cagaggcacc tgtaatcata tttttgataa
     1981 agtctctgtg gccaggagca tcaattaatg tgtaaaagaa tttttgagtt tcaaattttt
     2041 gaaaggcaag gtcaatagtt atccccctgt ctctttcatc cttgatgctg tcgagtaccc
     2101 atgcatactt gaaagtatca ccctttccag ttgcttctga ttctttggca tatgattcaa
     2161 tagttctttg gtcaattaca cccatatcaa ccattaaatg acctacaata gttgatttac
     2221 cattatctac atgacctaca accaccaagt tcatatgtgg ttttttactt gcactcataa
     2281 cggtagaaca ttcttagggc cttatttgta tttcgttaat tttaagccat tggtacaaat
     2341 caaatcaaat catatttagt ggacacgcac gaatcccaca aagaatcaat taggtacaga
     2401 aatcaaatct ataattcctc ttgttttaga caaaactcgc tcaagacata ggtgtgttgg
     2461 atattgttct ctggtagtca tcttcaagtc gttctatatc attctcatca aacctaccat
     2521 atgatatttc gagtatagtg cagtcaccat tcaatgcttt aactctgtgt tttgctctct
     2581 ttggaattac aacactttca ccttctttaa gagtcaaaag ttcattatcg atttctactc
     2641 ctgcattacc ttttataatt ttccagaact cccatctctc cttgtgaaac tgaagactga
     2701 gcctagaatt cgaattaatg taaattaatt taacagtgca aggttggttt tcatgaaact
     2761 tttcaaattt tccccagggt ctattctcag attgaatatt catacaaata aactgtaaga
     2821 agatgattta acaattacta ttgaacatgt tttgaaagat aatagttatt tatccacaaa
     2881 attactgcag aaatgtctat tgaaagatga atccagtata accctagtta tcaatgatgt
     2941 agggagtttt tttttgatta tattcgtatt gtgagtttgt atatatagtt agctattgaa
     3001 attttactgt gatggggaac tctaagaagg aataatgatg atacaagatt gataggaaat
     3061 caaggaaata gtagaaagtg ataatgttat taatatc
//
LOCUS       DASQSJ010000114         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_93778, whole genome shotgun sequence.
ACCESSION   DASQSJ010000114 DASQSJ010000000
VERSION     DASQSJ010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93778"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(33..209)
                     /locus_tag="VE223_02350"
     CDS             complement(33..209)
                     /locus_tag="VE223_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20461.1"
                     /translation="MLVVSLEILPRAAQKVEVVDSSSSSDSIGSAGGSGGSSPSIQDG
                     ALNHAVVVTPSQHQ"
     gene            complement(439..1488)
                     /locus_tag="VE223_02355"
     CDS             complement(439..1488)
                     /locus_tag="VE223_02355"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HZC20462.1"
                     /translation="MSSSKMLAAVVPSVNGKWEVKEVATPRPGVNQVLIKMHASGICY
                     TDVHATKGALGVKFPYTIGHEPAGEIVELGEGVTTRKVGDRVGVPWFQSTCGRCEWCQ
                     RGKPLFCPNHIATGINIAGGHAEYMVAYADATQLIPNGLSYDQAAPIFCAGYTVYSGL
                     RLADPNPHERIAVVGIGALGHLGIQYAKAAGFETIAVTHSKDKEESVYKLGADAVVSD
                     GEGLLKQKGQYDDGSPDGNEGGGADVILATSNSYKATADAIKGLRPDGRVVLMGVSST
                     ETLTVSPEILFKRARIIGSTQNDREHLYEALDYVAKGKVKVMTETFPLEEISNAYDKV
                     ANGNVRFKAVIKPTK"
     gene            complement(1550..1747)
                     /locus_tag="VE223_02360"
     CDS             complement(1550..1747)
                     /locus_tag="VE223_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20463.1"
                     /translation="MSQQEELKSILQEEIQNLKINLMKNHAQKRNNATDRLLSRLAYH
                     NGMIRINTIDRMGVKDNSKVR"
BASE COUNT          614 a          440 c          340 g          644 t
ORIGIN      
        1 taactgagct ttaagatttt cactaccttt tgttattgat gttgtgatgg tgttacaaca
       61 actgcatgat ttagtgctcc atcttgtatg gatggcgaag atcctccaga acctccagcg
      121 gaacctatag aatcagaact agaactagaa tctaccactt ccactttttg agcggcacga
      181 ggaagaatct ccagacttac tactagcata ttgcagattc aatgagacca caatcaaata
      241 actatctatc cgactcaaat tacattcttt aggtttaatt tactttcaga atatacatta
      301 gccataacct agtatttgac tgtactacta ctgcaatata gataggttat tagttgtaag
      361 ttctagtact acatgacact acaatccaac aatttggtta gcgataaacg gagcggaaaa
      421 aatagtgaat gaacaaattt acttcgtagg ctttattact gccttaaacc gtacatttcc
      481 attagctact ttatcatatg cattgctaat ttcttctaac gggaatgttt cagtcattac
      541 cttcacttta ccttttgcaa cataatctaa cgcttcatac aaatgttctc gatcattttg
      601 tgtggaacct atgatgcgag cacgtttaaa taagatctct ggagagactg tcagagtttc
      661 tgttgatgaa actcccatta aaactacacg tccatctggc ctgagacctt taattgcatc
      721 tgcagttgct ttatacgaat tacttgtagc caatattaca tctgctcctc ctccttcatt
      781 cccgtctggg ctgccatcat catattgacc tttttgtttt aacaacccct ccccatctga
      841 aacaacagca tcagctccga gcttgtacac tgattcttct ttatcttttg aatgtgtaac
      901 agcaattgtt tcaaaaccag cagctttggc atattgaatt ccgagatgtc ctagcgctcc
      961 tatgccaacg actgcaatac gttcatgtgg gttgggatca gctaacctca agccactata
     1021 tacggtatat cctgcacaaa atattggagc agcctgatca tatgacagtc catttggtat
     1081 taactgagtg gcatcagcat atgcaaccat atactccgca tgaccacctg caatattgat
     1141 gccagttgct atgtggttag gacaaaataa tggtttgcca cgttggcacc attcacatct
     1201 accgcatgtt gattgaaacc aaggtactcc tactctgtcg ccaacctttc ttgtagtcac
     1261 gccttcacct aattccacaa tttcccctgc aggttcatgt cctattgtgt aagggaattt
     1321 cactcccaag gcacctttag tagcatgtac atctgtatag catataccac tcgcatgcat
     1381 tttgataagt acctgattaa cgccaggtcg aggagttgcg acttctttga cttcccactt
     1441 tccatttact gatggaacaa ctgctgctaa catcttagat gaagacaact aatactactt
     1501 gttgaaagta tgtatatatc aattctcatt gttagtacct gcctattgat tatctaactt
     1561 tgctattatc tttaacaccc attctatcta tcgtgttaat tcttatcata ccgttatggt
     1621 atgcaagcct agataataga cgatcagtag cattattgcg tttttgagca tgatttttca
     1681 taaggttaat cttaagattc tgtatctctt cttggagtat ggattttaat tcttcttgtt
     1741 ggctcaaaaa gagtgcagta atctgtcaaa ttaaagaacg atacaatgga accacctcaa
     1801 aatgagcaaa gaagagaaca atgttataat gattattctt gtagtcacat cctgacctgt
     1861 cctacttgca acaaaaatat gatgatctag ataaaatgat caggctttac cgcgaaataa
     1921 atagggaatt gcagcaagag cgagaccaag caagagcgat agccattcag cttggacgat
     1981 aaagaaaaaa tatacaaaaa atcaatatgt caactgaaac tagcaatact taaccaaa
//
LOCUS       DASQSJ010000115         3243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_173414, whole genome shotgun sequence.
ACCESSION   DASQSJ010000115 DASQSJ010000000
VERSION     DASQSJ010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3243
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173414"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1159
                     /gene="mpgS"
                     /locus_tag="VE223_02365"
     CDS             <1..1159
                     /gene="mpgS"
                     /locus_tag="VE223_02365"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HZC20464.1"
                     /translation="ERFGAISLHGVQRVYELDSGFNGGRTTSETIRSIGNEEISEIER
                     KIAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPRQPVDRYKLEKEALEQFNRFVG
                     KNALILHQKDPGLYDALKEVGYTSIIAPDDTVRNGKAEGMMIGMLLAKMAEKEYVGFI
                     DADNYVPGAVNEYVKIFASGISMSNTPYTMVRISWIYKPKVSESGLYFSKWGRVSEVT
                     NQYLNSLISYYTGFETEIMRTGNSGEHCMSMKLAELLTYSPGFSVETYEIVNILEEFG
                     GIVPTENQEAMDKGVEVMQVETRNPHFHEEKGDLHLKEMFNGSLGCIYYSKICPPRLR
                     EKVIEELHGRGALDEGGEPSVLQKISPFKDIDTHQFANVLHNRATSFVHSG"
     gene            1840..>3243
                     /gene="asnB"
                     /locus_tag="VE223_02370"
     CDS             1840..>3243
                     /gene="asnB"
                     /locus_tag="VE223_02370"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HZC20465.1"
                     /translation="MEKKFDMCGIVGILSKKGENVVPLIEPMLSCMVNRGPDGAGIAA
                     NDLVIQSDSLENLKYNKLSGSSALGHLRLAIVGGTCGQQPFRSCDQRWTVEHNGEIYN
                     YKKIRKRLSKYHKFDTQTDSEVIVHLLEDHFIKNNDLLYAIKKTVAELDGVYGIVIKD
                     EVTGTIALVRDKMGVRQIYYGDNNNFIAFASERKALWKVGVKEPTKCVLPGHTIIITS
                     NGLLQEFKVAHPPTHSMKVAYKTMASAISAYEKALVASMRKRTQDFDRVGIIFSGGID
                     SVIIAWLAKKMVREVICYTGGIQGSSDIVFARQIAKKLKLKLRVNELTHDEVEQIIPE
                     IINVIEDTNAGQVEVAIPVYSAIKLAHEDGIKVMFTGQGADELFGGYSWYTKVVEKEG
                     YQKLREHMTEDLLLLYRETLEREDKIAMSHSIEMREPFLDMGVIRVSMQMDMKLNVKS
                     RDDSFGKHVHRRLAQKLG"
BASE COUNT         1134 a          495 c          678 g          936 t
ORIGIN      
        1 tgaaaggttt ggagcgataa gtctccacgg agttcagcgt gtatacgaat tggattcagg
       61 atttaatggt ggtaggacaa catctgaaac tattaggagt attggaaacg aagagatatc
      121 tgaaatagag agaaaaatag ctattgtcat tccaattaaa ggagagcgtt taaagttgct
      181 tgaaggagta ttgagtggaa tcccccatga ttgcttgaca attatcgtat ctaatagtcc
      241 aagacaacct gtggacagat acaaattgga aaaagaggcg cttgaacaat tcaatagatt
      301 tgtaggaaaa aatgcgctaa tattgcatca aaaggatcct ggattatatg atgcactaaa
      361 agaagtaggt tataccagca taattgcccc tgacgataca gtcagaaatg gtaaagctga
      421 aggaatgatg attggaatgc tacttgctaa gatggcagaa aaagaatatg tcggatttat
      481 tgatgctgac aattatgttc ctggagcagt aaatgaatat gtaaaaatat ttgcctcagg
      541 aatttccatg tctaatactc cttatacaat ggttcgtata tcatggattt acaaaccgaa
      601 agtttcagag agtggcttat acttttcaaa atggggaaga gtgtctgaag taacaaacca
      661 atatcttaat tcactaatat cgtattatac tggctttgag actgaaatca tgcgtactgg
      721 aaattcaggc gagcattgta tgtcgatgaa attagcagaa cttttaactt actctccagg
      781 tttttcggta gagacgtatg aaattgtaaa tatactagaa gaatttggag gaattgtacc
      841 aactgaaaat caggaagcca tggacaaagg agttgaagtg atgcaggtcg aaacacgtaa
      901 tccacatttc catgaagaaa agggagatct tcatttaaaa gaaatgttca atggatccct
      961 cggatgcatt tactatagta agatttgtcc tccaaggtta agggagaagg tgatagagga
     1021 gctgcatggc agaggcgcat tagatgaagg tggagaacca tctgtgctac agaaaattag
     1081 cccttttaaa gatatagaca cgcatcaatt tgcaaacgtt cttcataacc gggcaacaag
     1141 ctttgttcat tctggctaga taaaaccaca gaattggcat ttatttcaat tcctaaccat
     1201 cagtgctcta cacaatagca gataaagagt tgccgcatcg gaaaccataa tgatttacca
     1261 tcacatacag aggcaacagc tcactatcat tcgaatgata agtgcatgac tgaaaaagag
     1321 caaataatag ttcgataaaa tgctgttgta aagcaaatta cttgtctttg aaggtaaatc
     1381 acgttccttt tggtaatgat aatgttggat aatagaaatc ctttttccat tctattggtt
     1441 gtattatgta gttttgtgac actcatcaac aagccattta tacagcagtc aatgtactgc
     1501 ctattactag taggtattga tattgcataa ttattatttg atgatcaaat aggtagtaga
     1561 tatggagcaa tcattataaa ctaaagaaaa tagaagctaa aataggttat attccatgaa
     1621 aaaccaattg ctattgagat gtacatacct gtatctagac caagtaaccc aataatcttc
     1681 ctataaatag accaataggt ctaaatcaac tttaaacttg aattattgta aaagctccca
     1741 tgtataatgc ttttaagtca ttatgactaa ttatattgtg atttgtgatt gagatggtat
     1801 cctatcgctc aagatgggaa aacctgctct tcataaaatt tggagaagaa attcgatatg
     1861 tgtggaatag taggcatatt aagcaagaaa ggcgaaaatg ttgtaccgct tattgagcca
     1921 atgctttctt gtatggtaaa tcgtggcccc gatggagcag gaatagcagc taacgacctt
     1981 gttatacagt cagattcact tgaaaatttg aaatataata aactttctgg aagtagtgct
     2041 ttgggacatt taagacttgc aatagtaggt ggcacttgcg gacagcaacc ttttcgtagc
     2101 tgcgatcaga gatggactgt ggaacataac ggtgagattt ataactacaa aaaaattcga
     2161 aaaaggctat ctaaatacca taaattcgat actcaaacag acagtgaagt tattgttcac
     2221 ctgctagaag atcattttat caaaaacaat gatttacttt atgcaattaa aaaaactgtt
     2281 gctgaacttg atggtgttta tggtattgtt atcaaagatg aagtaacagg aacgatagct
     2341 ttggttagag ataaaatggg tgtaaggcag atttactatg gtgacaataa taattttatt
     2401 gcttttgcat ctgaacgtaa agcactttgg aaagtaggag taaaagagcc cacaaaatgt
     2461 gtcttacctg gacatacgat aattatcacg tcaaatggtt tattgcaaga attcaaagta
     2521 gctcatcctc caactcattc aatgaaagta gcttacaaaa caatggcttc cgctattagt
     2581 gcatatgaaa aagcattagt agcgtctatg agaaagcgca cacaagactt tgacagagtt
     2641 ggaataattt tctctggagg tattgacagt gtaattattg cttggctcgc aaagaaaatg
     2701 gtacgtgaag ttatttgtta taccggcggt attcaaggtt ctagcgatat tgtgtttgca
     2761 cggcagatag caaagaaact caaacttaaa ctaagagtta atgaacttac tcatgatgaa
     2821 gtagagcaaa taattccaga gattattaat gtgattgaag atacaaacgc tggacaagta
     2881 gaggttgcca ttccagtata ttctgcaata aagcttgcac atgaagacgg gattaaggta
     2941 atgtttactg gacagggagc agacgagctt tttggaggat attcctggta taccaaagta
     3001 gtcgaaaaag aaggttatca aaaattacga gaacatatga cagaagattt gcttttactt
     3061 tacagagaga ctcttgaaag agaagataaa atcgcaatgt cccatagcat tgagatgcgc
     3121 gaaccctttc tcgatatggg agtaattaga gtttcgatgc agatggatat gaaattgaat
     3181 gtaaaatcta gggatgactc ctttggtaaa catgtacata gaagacttgc tcagaaacta
     3241 ggc
//
LOCUS       DASQSJ010000116         2827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_405602, whole genome shotgun sequence.
ACCESSION   DASQSJ010000116 DASQSJ010000000
VERSION     DASQSJ010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405602"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..823
                     /locus_tag="VE223_02375"
     CDS             <1..823
                     /locus_tag="VE223_02375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20466.1"
                     /translation="VIGMQHKNANKRRKMAVEVIAISAAMVFALASNINGHNMQIAIA
                     ATKNNNSPTTTNSYSYSTNQMSSTPAASPGSTDKATKLALALRDLWVDHTGWTRNYII
                     SFVAGLPDTNLVAQRLLKNQEDIGNAIKPFYGSEAGNKLTSLLKDHITGAVELLKAAK
                     AGNKTGAAAAEKKWYDNADQIATFLSKANPNWSKVALKNMLDNHLALTKAEAVARLTG
                     NYATDIATYDKVRQEANMMSDALVDGIVKQFPDKFSSTVATTSTTTTTIPTTITE"
     gene            complement(1088..1525)
                     /locus_tag="VE223_02380"
     CDS             complement(1088..1525)
                     /locus_tag="VE223_02380"
                     /inference="COORDINATES: protein motif:HMM:NF018748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HZC20467.1"
                     /translation="MTTATTKPTDIKPPFDEEKAKLKVKAAENAWNTCNPELVSQAYT
                     EDSKWRNRTEFFSGREAIIDFLRRKWAKELDYLLMKELWCYTGNRISVRFEYEWRDAD
                     NPKQWMRTHGNEHWEFDDNGLMRIRDMSANDYPIKESERRYRK"
     gene            complement(1583..2770)
                     /locus_tag="VE223_02385"
     CDS             complement(1583..2770)
                     /locus_tag="VE223_02385"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HZC20468.1"
                     /translation="MNDQNEDDFVKVAEAKDIQTSQMKEVQFDSQDVCIANVDGKYYA
                     IGNVCTHEGGPLADGMLDGYEVECPWHQSKFDVRTGKVTSPPASESEPTYEIKVDGNS
                     ILIKKHSANSGKEQAQQQQQLQQQGPASRPSSQYELSLLEKQKFEATDVMSFRFSKRQ
                     NQQGKESDDNSFFDHTAGQYAFFDIGGVYNDPKGPIRHFTVSSSPTEDFVMITTRIRD
                     TPYKRRLSSLEEGTIVKVRGPQGKFVLHDDCSKPAVFLSGGIGVTPFRSMIKYATDRQ
                     LPIRIVMFDSNRNQENTLFKKEFDECVDRNKNFKIIYTITEEVVESKPDQKSSSAREW
                     TGERGRIDKAMLDKYLTNDELKDSIFYTCGPPGMIKAMQDLLQHDIKIPKEKIIVEEF
                     TGY"
BASE COUNT          858 a          576 c          472 g          921 t
ORIGIN      
        1 tgttattggc atgcaacata aaaatgcaaa caaaagaagg aagatggctg ttgaggttat
       61 cgcaatttca gcagcgatgg tatttgcgtt ggcatccaac atcaatggac acaatatgca
      121 aattgcaatt gctgccacta agaataataa tagcccaaca acaaccaatt cttactctta
      181 tagtacaaat cagatgtcgt ctactccagc tgctagtcca ggatctacag acaaagcaac
      241 taaactagcc ttggctctgc gtgatctatg ggtggatcac acaggatgga cccgaaatta
      301 tataataagt tttgttgcag gtttgccaga tactaatctt gtagcacaaa gactccttaa
      361 aaaccaagaa gatataggaa atgcaataaa gcctttctat ggtagtgaag caggcaataa
      421 attgacaagc ttgcttaaag atcatattac aggagctgta gagctcttaa aggcagcaaa
      481 ggcggggaac aagactggcg ctgcagcagc ggaaaagaaa tggtatgata atgctgatca
      541 aatcgctaca tttctgagta aggctaatcc taactggtca aaagtagcat taaagaatat
      601 gttagacaat cacttggcac tgacaaaggc agaagccgtt gctagactta caggaaacta
      661 cgctactgac attgctacat atgataaagt tcgtcaagag gctaacatga tgtcagatgc
      721 gctggtagat ggaatagtaa agcaatttcc tgacaaattt tcttcgactg tcgctaccac
      781 aagtacaaca acaactacta ttcctactac aataactgaa taatctacaa tcaactgctt
      841 gacagttaaa cccatctttt ccttccactt ttttgagaaa tggcaagtaa attctgttag
      901 tatataaccg ctctatttta agtgtcaata cctcatctag aggtataact ggctgacata
      961 atgtttgtca tataacgacg agaaaattta tgaacgatat atattccagt gcaaatgcag
     1021 cacagcattg ttattgtata gccttatatc taactctcct tttttctacg gcttatttaa
     1081 caatatacta tttgcgataa cgtcgctctg actctttgat aggataatca ttagcactca
     1141 tatcacgtat gcgcatcaaa ccattatcgt caaactccca atgctcatta ccatgagtac
     1201 gcatccactg ctttggattg tcagcatctc tccattcata ttcaaaacgc acagaaatac
     1261 ggttaccagt ataacaccaa agctctttca tcaaaagata atcaagctcc ttagcccatt
     1321 ttcgccttag aaaatcgatt atagcctctc taccactgaa aaattcagta cgatttcgcc
     1381 acttagaatc ttcagtatat gcctgagata ctagttctgg attgcatgta ttccaggcgt
     1441 tttctgcagc tttaactttc aacttggcct tttcctcatc aaatggaggt ttgatatcag
     1501 ttggtttagt agtggcagta gtcataggac ctgttttgaa aggtatgtca catatattat
     1561 gattattcta ttgtattttt tattagtaac ctgtaaactc ctctactatt attttctctt
     1621 ttggaatttt tatatcatgc tgaagcaagt cttgcatagc ctttatcata cccggaggac
     1681 cacaagtata aaatattgag tccttcagtt catcgttagt caaatatttg tccaacattg
     1741 ccttatctat tcttcctctt tctcctgtcc attctctagc agaagacgat ttttgatctg
     1801 gcttggattc tactacttct tctgtaatag tataaatgat tttaaaattc ttatttctat
     1861 ctacgcattc atcaaactcc tttttaaata acgtattttc ctgatttcta tttgaatcaa
     1921 acatcacaat tcttataggt aattgcctat cagtagcgta ttttatcatg cttctaaatg
     1981 gagttacacc aataccaccg gaaagaaaca ctgcaggctt ggaacaatca tcatgtaaaa
     2041 caaattttcc ttgaggacct cttactttaa ctattgtgcc ttcttccaat gacgaaagtc
     2101 tccttttgta aggcgtatct ctaattctag tggtaatcat gacaaagtct tcagttggag
     2161 atgaggaaac tgtaaaatgt ctaataggtc ctttcggatc attgtataca ccacctatat
     2221 caaaaaaggc atactggcct gctgtatgat cgaagaagga attatcatca ctctcttttc
     2281 cttgttgatt ttgtctcttg ctaaatctaa acgacattac atcagtagct tcaaactttt
     2341 gcttttctaa taatgaaagc tcatattgag aagaaggtct ggaagccggc ccctgttgtt
     2401 gtaattgttg ctgctgttgc gcttgctctt ttccgctatt agcagaatgt ttcttaatta
     2461 gtatgctatt accatctact tttatttcat aagtgggttc tgattcgctt gcaggagggc
     2521 ttgtcacttt accagttctc acatcaaatt tagattgatg ccaaggacat tcgacctcgt
     2581 agccgtccaa cataccatca gctaaaggac caccttcatg tgtgcatacg ttaccaattg
     2641 cgtagtattt tccatctaca tttgcaatac atacatcttg gctgtcaaat tgaacttctt
     2701 tcatttgtga tgtctgaatg tcttttgctt cagcaacctt aacaaaatcg tcctcatttt
     2761 gatcattcat tacgtgaata catcaatgct tttatttaag catattgtag tatataaaat
     2821 atttaaa
//
LOCUS       DASQSJ010000117         2194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_405639, whole genome shotgun sequence.
ACCESSION   DASQSJ010000117 DASQSJ010000000
VERSION     DASQSJ010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405639"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..216)
                     /locus_tag="VE223_02390"
     CDS             complement(<1..216)
                     /locus_tag="VE223_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HZC20469.1"
                     /translation="MLTSSRGFTLAENAFPPRGDQPEAIEKLVSQVLLKKGCQTLLGV
                     TGSGKTYTIANVIARTNKNTLVISHNKT"
     gene            578..1285
                     /locus_tag="VE223_02395"
     CDS             578..1285
                     /locus_tag="VE223_02395"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HZC20470.1"
                     /translation="MEGGGEEQEPGYEVSKHKFIAFLENEAKLRVDDFIVGAIEIAEE
                     VHSGVKREDRLSPFLETHTLPVTMDVVKHYRSVNRNITSVEIASSILHDVLEDNDRIL
                     DWYQTKAYGFEAYLVYRFGNRVYHIATELKIRPLENYSGTDYEERQLARFQDYCNMLI
                     SADYDVKVIKLADRLNNMRFISRVSEHPKVERYLREAEDFFLAYTMLEPKMPDFYKKI
                     RLAYEKLRESSKKVLAT"
     gene            1512..>2194
                     /locus_tag="VE223_02400"
     CDS             1512..>2194
                     /locus_tag="VE223_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta"
                     /protein_id="HZC20471.1"
                     /translation="MVSLNTAVIIKLEPDFSEGNVSYNSDGTLNRAETKSILGPHSAV
                     ASKAAFYSKVKYGARISVGTMGPPIADYALQQAQLICDADELHLYSDRIFAGADTLAT
                     AEVLKTGIGKMEGGKMDIVFSGHRASDGETGQTGPQTAWKLGYTFLGNVLDYDIDLEK
                     RTVIAKRLITLQGFYDIIEEVEAPLPVFITVDPSYKPAFNTISQRLAFVKYQKEGNER
                     AQSYKKYLKV"
BASE COUNT          747 a          355 c          424 g          668 t
ORIGIN      
        1 agttttgtta tgggatatta ccagggtatt tttgtttgtt cgtgcgataa cattggctat
       61 tgtatatgtc tttccgctac ctgtaactcc aagcaaagtt tggcagcctt tcttaagtaa
      121 gacttgacta actaattttt caatagcttc aggctggtcg cctctaggcg gaaatgcatt
      181 ttctgctaat gtaaagcccc ttgagcttgt aagcactaaa agatcctatc atcaaaacga
      241 acatatattg ttatataatg acagacgtta acactgaaca cgagcaatat aaaattggca
      301 attactgtga tgcacaacta tagccatttt accttgtagc caaagttgat cttctataaa
      361 agtcaaatca gaatattgaa atgtaattcg agattatgat cgttaaaagt agtcaatatt
      421 gaatgactaa atttcaaaaa acttaggaga atcacaatat tatttaatta agataatttg
      481 actaaaatgt agaacattct aaacaatctc ctgcctttct ttacatatat gtagatatac
      541 caaaattctt ttgttttacc cctgtagtat taatgtcatg gaaggaggag gagaagaaca
      601 agaacctggc tatgaagtta gcaaacacaa gtttatagca tttttggaaa atgaggccaa
      661 gttacgtgtt gatgacttta tagtgggcgc aatcgaaatt gcagaagagg ttcattcagg
      721 ggtaaaaaga gaagatcgtt tatcgccatt tcttgaaaca catacattgc cagtcacaat
      781 ggatgtagta aaacattaca gatctgttaa ccgtaatatt actagcgttg aaattgcttc
      841 ctcgatttta catgatgtat tagaggacaa tgatagaatt cttgattggt atcaaacaaa
      901 ggcatatggc tttgaggctt acttggttta tagatttgga aatagagtat atcacatagc
      961 taccgaattg aaaattcgtc ctctagaaaa ttattcgggg acagattatg aagagcgtca
     1021 actagccagg ttccaagact attgtaatat gcttatatct gctgattacg acgtaaaagt
     1081 tatcaaactt gctgatagat taaataatat gagatttata tctcgcgtat ctgaacatcc
     1141 caaggtagaa agatatttga gagaagcaga agactttttc ctagcttata ctatgcttga
     1201 acctaaaatg ccagatttct acaagaaaat tagattagca tatgaaaaat taagagagtc
     1261 atccaaaaag gttcttgcaa catagcataa ttaataataa agatatcatc ttcagtgcat
     1321 tcatccatca ttattaagat cgatattgta gtgtcaattg ttttgtatga gttttatgtt
     1381 atatttccaa aatagtccgc tcatcaaagc agttattgcc atacatgtca taagtatgga
     1441 ttagtaacat ttggtagtaa ttttctttcg caaaccattt aaagggtata gtatgcggaa
     1501 gaaagaaggt aatggtttca cttaatacgg cagtcattat aaaactagag cctgattttt
     1561 cagaaggaaa tgttagctac aattcagatg gaacactaaa cagagcagag acaaagagca
     1621 tccttggacc ccacagtgca gtagcatcaa aggcagcatt ttattccaaa gtaaagtacg
     1681 gtgcacgtat ttcagttgga actatgggtc ctccaattgc tgattatgct ttacaacaag
     1741 ctcaattaat ttgtgacgca gatgagttac atctttatag tgacaggata ttcgcaggcg
     1801 cagatactct ggcaactgct gaagtattga aaacaggcat aggcaaaatg gaagggggga
     1861 aaatggatat tgtattttca ggacacagag cttctgatgg tgagactggt caaacaggtc
     1921 ctcagacagc atggaagctt ggttatacat ttctaggcaa tgtccttgat tatgatatcg
     1981 accttgaaaa gcgaactgtc atagcaaaac gcttgatcac cttgcaaggg ttttatgata
     2041 taatagaaga ggtagaggca cctctccctg tatttattac agtcgatcct tcatacaagc
     2101 cggcatttaa cactatttca caaagactgg catttgtaaa gtatcagaaa gagggaaatg
     2161 aacgggctca aagttataaa aaatacttaa aagt
//
LOCUS       DASQSJ010000118         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_14944, whole genome shotgun sequence.
ACCESSION   DASQSJ010000118 DASQSJ010000000
VERSION     DASQSJ010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14944"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VE223_02405"
     CDS             <1..307
                     /locus_tag="VE223_02405"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HZC20472.1"
                     /translation="FYGVIATFILGNGYAVLIGASGAISGIIGIAAATGNTQAYYWIL
                     LQIIFAVVGSVTSIPIAFTAHIGGFIAGLSFTKVFVSLDRIKRTRYWSRNSSNYSKY"
     gene            395..532
                     /locus_tag="VE223_02410"
     CDS             395..532
                     /locus_tag="VE223_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20473.1"
                     /translation="MLDANMVDTKQSKEIAPADTLKRQFYIVEGWFAVVDTFHTESLL
                     I"
     gene            609..740
                     /locus_tag="VE223_02415"
     CDS             609..740
                     /locus_tag="VE223_02415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20474.1"
                     /translation="MSLASLVNSSANRLHKVIANLAGTPTKEKAGLPILTSPGPILE"
     gene            complement(938..1120)
                     /locus_tag="VE223_02420"
     CDS             complement(938..1120)
                     /locus_tag="VE223_02420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20475.1"
                     /translation="MVRYSKAHDNNITFRKMVGLPEVVWSKDEDKDKNEEEDTSHLHN
                     SSIQDSKQSTVSDFTT"
     gene            complement(1095..>2294)
                     /locus_tag="VE223_02425"
     CDS             complement(1095..>2294)
                     /locus_tag="VE223_02425"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZC20476.1"
                     /translation="SFQLLRTLGSTYYGGADIGECLSTAYRIKEGDFESWHSEWLATA
                     ERVSKYGDNSLSSGHKVSAREAYLRAFNYYRNAEFFLHTNPQDRRIIETWQKSVDSFK
                     KAAQLLPNPVEFVEIPYEGTSLPGYFYKVDDKYNTSSSPFSKPKPTLILHTGFDGTQE
                     ELYVTSVIAALSRGYNCLTFEGPGQGRVIRKQKIPFRYDWEKVVTPVIDFVARNYEAE
                     CDIKRLALMGISMGGYLAARAVAFEHRIAACILDDGVYDIYENYMEKLGTLGDAITQG
                     NATVVNTAIETSMYFDTTIRWAISHGMWSFNAKDPLDLIRKNKDYTLKGVADNIECPT
                     LVLEAQMDDDFPGGPKKVYNALKCPKKYVLFTAEEGAEDHCQVAALSLSNQRIFDWLD
                     GEVFKSS"
BASE COUNT          684 a          447 c          385 g          778 t
ORIGIN      
        1 gttttatgga gttatagcta ctttcatttt gggaaatgga tatgcagttt taataggtgc
       61 atctggcgca atttcaggta taataggtat agcagctgca actggaaata cccaagcata
      121 ctactggatt ttgcttcaga tcatatttgc tgttgttgga tcagttactt caattccgat
      181 agcatttact gcacatattg gtggttttat tgcaggtctt tcctttacaa aagtatttgt
      241 tagcctagat cgcataaaga gaacaagata ttggagtaga aatagcagta attatagtaa
      301 atattaaaaa attcatctca tcgacatgat attgctattt tgatataaga gataataaac
      361 cttcaaaaag aaatagacca catagaggaa tttattgcta gacgcaaaca tggttgacac
      421 caaacaatcc aaagaaattg ctcccgctga tacattaaag aggcagttct atattgtaga
      481 aggttggttt gctgtagttg atacttttca tacagaatcg ctactaatat agtaaagtaa
      541 ttcacgtcct ctttaataga tcttgtttca tttgttgaaa ctctgagtct gatattacta
      601 cttgttcttt gagtttagca agcttagtca attcatcagc aaatagattg cacaaggtta
      661 ttgctaacct tgcaggaaca ccaacaaaag aaaaagcagg tctaccgatt ctaacttctc
      721 caggaccgat acttgaatga ttttaacgct atccagacta ttgttatctg cgcttgctgt
      781 ctctccagtt cttttatttt tgttgtttat tttttttctg ttattataaa aagtaacgac
      841 cagaaaggca ttattcaaat atttgtacta ttctaataca atattcttag taaagaacta
      901 gtacacgtga caaaagagat tgtaatggct aaggagttta tgtagtaaaa tctgaaacag
      961 tactttgctt tgaatcttga atgctgctgt tatgtaggtg tgatgtgtct tcttcctcat
     1021 tcttatcctt atcctcatcc ttactccata cgacttccgg caatcccacc atcttcctaa
     1081 atgttatatt attatcatga gcttttgaat acctcaccat caagccaatc aaatattcgt
     1141 tgatttgata atgaaagcgc agcaacttga caatgatctt cagctccttc ttctgcagta
     1201 aataacacat atttctttgg acatttaaga gcgttgtata ctttctttgg tcctccagga
     1261 aaatcatcat ccatttgagc ttcgagcaca agtgtaggac attctatgtt atctgccaca
     1321 ccttttagag tatagtcttt gttctttcgt ataagatcca aagggtcttt tgcattaaat
     1381 gaccacatac catgagaaat cgcccacctt atagttgtat caaagtacat agatgtttca
     1441 attgcagtgt taacaactgt agcatttccc tgtgtaattg catcaccaag tgttccaagt
     1501 ttttccatgt aattttcata tatatcatat acaccgtcat ctagtatgca tgcagcaata
     1561 cgatgctcaa aggctacagc tctagctgct aagtaaccgc ccatgcttat tcccatcaaa
     1621 gctagacgct ttatatcaca ttctgcctca taatttctag caacaaaatc tattacaggt
     1681 gtaaccacct tttcccaatc atatctaaat ggaatcttct gtttgcgtat tactcttccc
     1741 tgtccagggc cttcaaatgt caagcagtta taccctctac tcaaagctgc aatgacacta
     1801 gttacataga gttcttcttg agtcccatca aatcccgtat ggagaataag agttggtttg
     1861 ggtttagaaa aaggagaaga acttgtatta tacttgtcat ctactttata gaaatatcca
     1921 ggtaatgatg ttccttcgta cggtatttca acaaattcaa ctggattagg aagcaattgt
     1981 gctgcctttt taaatgagtc aacactcttt tgccatgtct ctattattct gcgatcttgt
     2041 ggatttgtgt gtaaaaagaa ctctgcattt ctataataat tgaaagctct gaggtatgct
     2101 tcacgagcac taactttgtg gcctgatgat agactgttat caccatactt gctaacacgt
     2161 tcagcagttg ctagccactc gctatgccag ctctcaaaat caccttcttt gatccgatat
     2221 gctgtggata aacattctcc aatatctgca ccaccataat atgtggagcc tagtgttctt
     2281 agaagctgaa atga
//
LOCUS       DASQSJ010000119         2010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_94602, whole genome shotgun sequence.
ACCESSION   DASQSJ010000119 DASQSJ010000000
VERSION     DASQSJ010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94602"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..322
                     /locus_tag="VE223_02430"
     CDS             <1..322
                     /locus_tag="VE223_02430"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HZC20477.1"
                     /translation="PQSKLEGAFIALKELDLGGLTYYDSKGRGQIPRPKLPSGRGTST
                     YVPEFNVNSTIVLVAKDSMVDKIIDKILGSTSTGLAGEGKIFISEIDDAVDIGSNKRG
                     ESAI"
     gene            861..1472
                     /locus_tag="VE223_02435"
     CDS             861..1472
                     /locus_tag="VE223_02435"
                     /inference="COORDINATES: protein motif:HMM:NF034126.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Csl4"
                     /protein_id="HZC20478.1"
                     /translation="MKRERPSSSPILPGEQIAFIEEFEGGKNTYINNGSVRSSAVGTK
                     VYDFKRRIVKIDQKNSPMLPKIGDIVVGYIEMLFGNMFSVRILYVNDKKSEAGFSAIA
                     STRLGGGGGRERGDRRARLIFRIGDIIRGRVVSLLNSTVHITIDEKEFGVLYTLCFNC
                     GGDTVKLNNAVKCIECSVFEERKLTNDYGKETFRLIHKTGNNN"
     gene            1480..>2010
                     /locus_tag="VE223_02440"
     CDS             1480..>2010
                     /locus_tag="VE223_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HZC20479.1"
                     /translation="MKTQRVAFQGEKGAYSELATSQYFRNAEILPMKTFEEVFENIER
                     GKVDFAIIPIENSIEGSINETYDLLLQTNMLVSGEIYLRIRHCLIANKHTNSIIDSVY
                     SHPQALAQCRSYLKKKRLEPIPTYDTAGAVKMIKERNIANAAAIASRRAAEIYDMEIL
                     DEGIEDKKNNFTRFLVL"
BASE COUNT          718 a          303 c          424 g          565 t
ORIGIN      
        1 ccctcagtca aagttggaag gagcatttat agcattaaag gaattggatc taggtggtct
       61 aacatattac gattcaaaag gtagaggaca gattccaagg cccaaattgc cttctggaag
      121 aggaacttct acttatgtac cagaatttaa cgtaaattct acaatcgtat tagtggccaa
      181 ggattctatg gtagacaaga tcatagataa aattctagga agtacaagta ctggtttagc
      241 tggagaagga aaaatattca tatcagagat agacgacgct gtggatattg gttcaaataa
      301 acggggagaa tctgcgattt aagcagcatt gtacagaaat aattgtatgt tggggtgtct
      361 tgtgcaagaa taatgaacat aactaaaacc aaagttcatc aagatttaga gtagatatta
      421 gctaattctg ttaaatttta tctaccaaga gttgatggat agcgaggttg tgcataatat
      481 tgcctccgaa tattgtttct agaatttgac ggccattttg agggaaaatt tgaccattca
      541 agtatattcg tgttgatata catacctctt atattaatga gaaaaaatga tagagtttgc
      601 aattaagatt cgtttgaggt taaagtagaa aagcttcgct atgaaatgtg ataaacaatt
      661 aattttttga ttattcaagg tcgattttaa aggagtataa gttttgatgc atccatgcat
      721 gcatataaac tagcattttt gtgttatcag actagaacca gacgattaga aaacaatctt
      781 caaaatcaat cctgacttct acgcggtata tgcatcccaa tgtaacaatt ataactttca
      841 caaagatcta caactcgtat atgaaaagag agaggccgtc gtcttcacca atcttgcccg
      901 gagaacagat tgcattcatc gaagagtttg aaggtggaaa aaatacttat attaacaacg
      961 gatcggttag atcatctgca gtaggaacta aagtttacga ttttaaaaga cgtatagtca
     1021 agatcgacca aaaaaactca ccgatgttac caaaaatcgg agatatagta gttggttata
     1081 tagaaatgtt atttggaaac atgttttcag tgagaattct gtacgtgaac gataagaaat
     1141 cagaagcagg attttctgca atcgcctcca caaggttagg aggtggtggt ggacgtgaga
     1201 gaggagatcg aagagcgaga ctcatattta gaatcggaga catcatcaga ggacgtgtag
     1261 tcagtttatt aaactcaact gttcatatta caatagacga aaaggaattt ggagttctat
     1321 atacattatg ttttaattgt ggcggggaca ctgtcaagct aaataacgca gtaaaatgta
     1381 ttgaatgtag cgtttttgaa gagcggaagc tcacgaacga ttatggcaaa gagacattca
     1441 ggttgatcca taaaacaggt aataataatt agattagtaa tgaaaactca aagagtcgcc
     1501 tttcaaggtg aaaaaggagc ctatagcgaa cttgcgactt cacaatattt tcgaaatgca
     1561 gagattctcc caatgaaaac ttttgaagaa gttttcgaga atatagagag aggtaaggta
     1621 gacttcgcca taattcccat tgaaaactca atcgaaggaa gtattaatga aacttatgat
     1681 ttattgttgc agacaaatat gcttgtgtcg ggtgaaatct acctaaggat aagacactgc
     1741 cttattgcaa acaaacatac gaactcgata atagattcgg tgtactctca tcctcaagct
     1801 ctagctcaat gtagaagtta tttgaaaaag aagagactag agcccattcc aacgtatgat
     1861 actgctggtg ctgtaaagat gatcaaagaa aggaacatcg ccaacgcagc tgcaatagct
     1921 agtaggaggg cagcagagat ttacgacatg gaaatcctag atgagggaat agaagataaa
     1981 aaaaataatt ttacaagatt tttagtactc
//
LOCUS       DASQSJ010000120         8151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_365140, whole genome shotgun sequence.
ACCESSION   DASQSJ010000120 DASQSJ010000000
VERSION     DASQSJ010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8151
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365140"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..1070
                     /locus_tag="VE223_02445"
     CDS             114..1070
                     /locus_tag="VE223_02445"
                     /inference="COORDINATES: protein motif:HMM:NF016980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20480.1"
                     /translation="MQEKTIVYDANGRILGKKMIVFDNVKDIRVLSNPLAWRIMELLS
                     HRAMYPAEIAKNLRIYEQSVYYYIRKLLASGAIEEVTTNLIKGGTARLYRPSSPSFGI
                     EMNWGEKQLDFRANIQKKHQKAHKFFGNYIINNSFHGLIIVGAPDPHGPYKSSARDGH
                     YAVHLAFFLGTLGEISTEFIVKLDADAKAERVLDRGNLISIGGPGTNIVTAHFNKYLP
                     IKFNETNFWSGLVDRAGNLYNSNNHGLIARIKNPYNNNGTVIVIAGVRSLGTKSAVIA
                     LTNYSEEILKNYQDQDQWALIVQGFDMNSDGKIDHVDITSVA"
     gene            complement(1073..1579)
                     /locus_tag="VE223_02450"
     CDS             complement(1073..1579)
                     /locus_tag="VE223_02450"
                     /inference="COORDINATES: protein motif:HMM:NF003139.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HZC20481.1"
                     /translation="MGDPRKSKKTFHRPRRIWTADQLNAELYIIGSYGLRNKRELWKA
                     QSEVARFRNQSRALLALPSELRAEKETQLLGFLNRLGLVNESATLDDVLNLKIEDLLE
                     RRLQTIVMKKGGTKSPHQARQIVVHGHVSLGDRIVNIPGYLVRREEEPSIILLHTAGV
                     ASQTQTHS"
     gene            complement(1611..2162)
                     /locus_tag="VE223_02455"
     CDS             complement(1611..2162)
                     /locus_tag="VE223_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HZC20482.1"
                     /translation="MSASDYKHILRIAGKDITGSKKLIVALSEIKGIGYNFAQVLLQS
                     LNISPNIRVGFLTDKELSDIEAAIKNPSRSGMPYWYVNRRKDMDTGSDQHLITSDLDF
                     AISNDIDREKNVMSWRGYRHMFGLRVRGQCTRTTGRRGGAVGVKRTGKPMPGGPSPAA
                     GSGVTTAQTPVTEPAKTTEPSSK"
     gene            2425..4080
                     /locus_tag="VE223_02460"
     CDS             2425..4080
                     /locus_tag="VE223_02460"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZC20483.1"
                     /translation="MSSKHIEDIVHRSYNLKPKYTEILPGVPEEYKEIKTLGDLLQIN
                     YKHISVEEQIRGTLVAKMKNGEHPYSGIIGYDDDVIPAINRAILSGHDILFVGQIGQA
                     KTKVAESIAKNLLSLIPVVRGTMTNDIPSSIPEEQLIGLLNGSEVFHTYPEFTVSKEC
                     ENIISDNKLETKIDWKSGIQRYRYILATPDISIKDLVGQIDAIKIAKKGVELYSIESY
                     SPGQLLQARHGILCIDELPVLDPRKQVALLSVLQEGKFTTGSYPVVFKPDVKIIATSN
                     PIDYTHSGKIIEPLFDRLRSHINTHYPKNTFDEMLIIVQEARIADTKNVFVPVFILKS
                     VAKITHLARNHHDINQDKGVSVRMGVHSLELLIGEAERTRSILHSVNAVPRFCDIHSI
                     HQSSKFELSELEDNRQNRINILESLISRAIKEVSLEYVERLSSEQITKLKIEFAKNKT
                     FLVSQMMLGDKKCDSGDYESQLIKFPSLKQVLDETMVYIKEDQNNLVNKANQLGIKTE
                     NICITQDLDGEFFASVTEVVLEGLRWIQPPLLDKKDDNRYEFV"
     gene            4055..5467
                     /locus_tag="VE223_02465"
     CDS             4055..5467
                     /locus_tag="VE223_02465"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HZC20484.1"
                     /translation="MITDMNSFSNNTLGTKGFVYFPCDNLELQNRREEQEDQNISNDV
                     LDKLLKTIGREVLREKTPNLQELEQLLQDISTSHDSNHESHNQQQERNQSANVTGIPS
                     RISAPQPIIRHLIQKGYLKDSQKWLSSKGFITIGGKILNDVMKTLKAGDFGVHNTNAI
                     GYGSVTLDTNRKYEPGDDIRLLDVPSSLLNTVQRVAKKSKQIEIPLKIDVDDLQEYET
                     MQDVTVALVYCIDLSSTMRYSSMSGDMSRIEAAKRALWSLFLLNRRYFPSDSIYVVGF
                     GALASKVAPYDIPYLKTFEPGSDFLHYTNYQSAFRLSNKILQTHSATNKRIVLITDGH
                     PSACFIDNKKEQDEILSQKPYSHFYTADKETLHFFKENQDMSLDITSGEVVYLCYRYK
                     HVDQYIGERTIREAKKCHRLGVEIDTIMISEEDSLLGYVNEMEKNVRGRSYYINPGTI
                     DRVLLTDYLNNKKKTIRART"
     gene            5579..6382
                     /locus_tag="VE223_02470"
     CDS             5579..6382
                     /locus_tag="VE223_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HZC20485.1"
                     /translation="MMLEVDYLDWNNALGVLSKAYQTGLFALIIGPKGTGKTTLVRKF
                     ASQVKKELYSVNFSLRTRESHLIGTKTLDKGEISFVEGILVKSMRNAGVLYLDELNAA
                     EADVLLRLDEALDDRRQLVLKEAEGQLINAASDWFVIATINPLSHVGTKELPPQLLSR
                     FPIRLRLDYPPEEVELQIISRHTEVDSSKLNDVKRAIKLAKNLRDAAALEELYYSPSL
                     RETIAFAKLLNTGIKSNQAAEIVYANVYDQWGEVEYRKVMDMITSLFGD"
     gene            6434..7975
                     /locus_tag="VE223_02475"
     CDS             6434..7975
                     /locus_tag="VE223_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HZC20486.1"
                     /translation="MLDIATFLARRWSGNSKIVIVLSEDKIPISKPDKNQIILPLINY
                     YPGTDFQKYRQWRVALWYESMRMHYSTKVLSYDHAFGLLLNTIETKRVEFLGFREWEG
                     MVKEIIFNESISWLSRPLLNSLYGRYKIVEAFSQYFLTGYLKGEVFGSEFDRVKKASE
                     FANELIEEAIKNNYSTNWIEQHIPKLIKMLEIDPLMSIPIIAPRTRLGMSINQSDLLK
                     QIEKVVIAKHKYDDIDKATKNIIQGNDVLGEFETLVNESKKTENKGYESLENIGLSIP
                     ERMDLDETQIYDIDLIRKIKAAFRDWRTGWIERHDKTGEEFDPESYTESLPKPFLTDL
                     KLSIKTKVTILLDHSSSIEDAELEYKQATIALCEALHYLAIKFAVYAFNTEARQVKCW
                     VVKPPNVKWSLISARRLVQIKASGGTPLAEIYGLLIPVTKSFKPDIMVTLTDGEPSDF
                     DAVREMVLTYRKMGIKMVALGVGRNLNDSVGITHNLKYLNYEKTVAVSRLQHMPKKVI
                     NLLRA"
BASE COUNT         2772 a         1432 c         1598 g         2349 t
ORIGIN      
        1 ataccgatat aatattattt tgtgcacgcg tattcagaaa ggataagata agataaaaaa
       61 agttctccta ccggtaaata aaaatatata actgcgagcc tcataactcg cacttgcaag
      121 aaaagactat agtatacgat gctaatggca ggatccttgg caaaaaaatg atcgtctttg
      181 ataatgtgaa agatatacgt gttctctcta atcctttagc ttggagaata atggagttgt
      241 tatcacatag ggccatgtat cctgcagaaa ttgcaaaaaa tctacggatt tatgagcaaa
      301 gcgtatatta ctatatccgc aagctgttag cgagtggagc aatagaagaa gtcacaacta
      361 atcttattaa gggcggcact gcaagacttt atcgtccatc gagtccatca tttggtatcg
      421 aaatgaattg gggagaaaaa caattagatt ttcgggcaaa cattcaaaag aaacaccaga
      481 aggctcataa attttttggt aattatatta taaataattc attccacggc ctaataatag
      541 taggagctcc agatccacat ggcccataca aatcgtctgc aagagatgga cactatgccg
      601 tacatttggc atttttccta ggaacgcttg gagagatttc aactgagttc atagtaaagt
      661 tggatgctga tgcaaaagca gaaagagttc ttgatcgtgg taacctgatt tcaattggtg
      721 gtccaggtac aaatatcgta acagcacact ttaacaaata cttaccaata aaatttaatg
      781 aaacaaattt ttggtcaggt ttagtcgaca gagccggcaa cctatacaac tcaaataacc
      841 atggtttgat tgcaagaata aaaaacccat ataataataa tggaactgta attgtaattg
      901 ccggcgtaag atcgctgggg actaaatccg cagttatcgc tttgacaaac tatagcgagg
      961 agattttaaa aaattatcaa gatcaagatc aatgggcctt aatagtacag ggatttgata
     1021 tgaactctga tgggaaaatt gaccatgtag acattacgtc agtcgcatag agctaagaat
     1081 gtgtttgggt ttgggaagca accccggctg tatgtaatag aataatagat ggttcttctt
     1141 cccgccttac taggtatccg ggtatattca caattctgtc tcccaaggaa acatgtccgt
     1201 gaaccacaat ttgccgtgcc tggtggggcg actttgtacc ccccttcttc attactattg
     1261 tttgaagtct acgctcaagg aggtcttcaa tcttcagatt taaaacatcg tcaagggtag
     1321 ctgattcatt tacaagccca agtctgttta agaagcccaa caattgtgtt tctttctcag
     1381 cccttagctc tgatggaagt gctagtaatg ctcttgactg gtttctgaat ctagcaacct
     1441 ctgattgcgc tttccacaac tcacgtttat ttcgtaatcc atatgagcca ataatataaa
     1501 gttcagcatt aagctggtct gcagtccata ttcttcttgg tctatgaaac gtcttttttg
     1561 atttacgagg atctcccatt cacacttctc tccaattatc tcttgactgc ctattttgag
     1621 gatggttcgg tagttttagc tggctctgtt acaggtgttt gggcggttgt tacaccagat
     1681 cccgctgcgg gtgatggacc tcctggcata ggcttacccg tcctcttaac tcctactgcg
     1741 ccacctcttc tcccagtcgt tcgggtacat tggcctctta ccctaagacc aaacatatgt
     1801 ctataaccac gccaactcat tacattcttt tcacgatcaa tgtcatttga gattgcaaag
     1861 tcaagatcag aagtaatgag atgctgatca gaacccgtat ccatgtcctt ccttctgttt
     1921 acataccagt atggcatccc tgaccttgat ggatttttaa tagctgcctc aatgtctgat
     1981 agctctttat ctgttaaaaa ccctaccctg atgttcgggc ttatatttaa agactgtagt
     2041 aaaacttgag caaaattata accaatccct ttgatttcac ttaacgcaac aatcaatttc
     2101 ttgcttcctg tgatgtcttt acccgctatt ctaagaatgt gtttatagtc tgatgcggac
     2161 aagctaaaga ataaaaataa cttccgcaat aaaaaccatc tggatttatc atatttgatc
     2221 ttgatgaact acatagagaa gactcgctta tatttacgga taatacttca atgtaattgt
     2281 taagtaaaca actgactttt aggtttgtga acttgctgac atcacataaa atctatctag
     2341 aaaatgcaat aattcttata tgcattattt gacttttaat tgaaatgttt aaatccatga
     2401 aacagtacgc gaactacata ttatatgagt tcaaaacata tagaagatat tgtacaccgc
     2461 tcatataatt taaagccaaa atatacagaa atattacccg gtgttcctga ggagtataaa
     2521 gagatcaaaa cattagggga tctgctacag atcaattata agcatatttc agtggaagaa
     2581 caaatacgtg gaactcttgt agcaaaaatg aaaaatggcg aacacccata ttcaggcatc
     2641 attggatatg atgacgatgt tattcctgca atcaaccgag ctattttatc aggtcacgat
     2701 attcttttcg tgggacagat cggacaggca aaaacaaaag ttgccgaatc aattgcaaag
     2761 aatcttcttt cgttgattcc tgtagtaagg ggaaccatga caaatgacat cccaagttcg
     2821 attcctgaag aacaacttat aggcctacta aatggttcgg aagtattcca cacttatcct
     2881 gaatttactg tttctaaaga atgcgaaaat attataagtg ataataaatt ggaaaccaag
     2941 atcgattgga aaagtggaat acaaagatat aggtatatac ttgctacacc tgatatctcg
     3001 ataaaagatc ttgtcggtca aattgatgca attaaaattg ccaagaaagg cgttgagttg
     3061 tatagtattg aatcttattc tcctggtcaa ttgttacaag cccgtcatgg aattctatgt
     3121 attgacgagt tgccggtact cgatccacga aaacaagtgg cactgctaag tgttctgcag
     3181 gaaggaaagt tcacgacagg ctcttatcct gtagttttca agccagatgt aaaaattatt
     3241 gcaacatcaa atccaataga ctacacacat tctggcaaga ttatcgaacc tttgtttgat
     3301 aggctcagaa gtcatataaa tactcactat ccaaagaata cttttgacga gatgctcatc
     3361 atagttcagg aagcacgaat tgctgatacc aaaaatgttt ttgtaccagt tttcatccta
     3421 aaatccgtag ctaagattac gcatttagct agaaatcatc atgatattaa tcaggataaa
     3481 ggcgtaagtg ttagaatggg ggttcactct ttggagcttt tgataggtga agcagaacga
     3541 actagatcca tattacattc tgtaaatgca gtgccccgat tttgtgatat ccatagcatc
     3601 catcagtcct ctaagttcga gttatccgaa ttagaagaca accgccaaaa taggataaat
     3661 atactcgagt cactaatcag cagagcaata aaggaggttt cacttgaata tgtcgaaagg
     3721 ctatcttctg agcaaataac gaaattgaaa atagaatttg caaaaaacaa aacatttctg
     3781 gtatctcaga tgatgctagg tgacaagaaa tgtgattctg gcgactatga atcacaatta
     3841 ataaagtttc ccagcctaaa acaagtgttg gatgaaacca tggtatacat caaagaagat
     3901 cagaataatc ttgtaaataa agcaaatcaa cttgggataa aaaccgaaaa tatatgtata
     3961 acacaagact tagatggaga attttttgca tcggttaccg aagtagttct agagggtcta
     4021 agatggattc aacctccatt gctagataaa aaggatgata acagatatga attcgtttag
     4081 caataatact cttgggacaa aaggctttgt ttattttccc tgtgacaatt tagagctcca
     4141 aaatagaaga gaggaacaag aagatcaaaa tatatctaac gacgtgctag acaaattatt
     4201 aaaaactatt ggtagagaag tactgagaga aaagactcca aatctgcaag aacttgaaca
     4261 attgttacag gatatttcga cgtcgcatga tagcaatcat gaaagccata accaacagca
     4321 ggaaagaaat caaagtgcga acgttacagg aataccaagc aggatttctg ctccacaacc
     4381 cataataaga catcttatac aaaaaggata tcttaaagac tcgcaaaaat ggcttagctc
     4441 aaagggtttc ataactatcg gtggaaaaat tttaaatgat gtaatgaaga ctttgaaagc
     4501 tggtgacttt ggagttcata atactaacgc cattggatat ggctctgtta cattagacac
     4561 gaacaggaaa tatgaacccg gagatgatat tagacttctt gatgttccga gttcgttgct
     4621 aaatactgtt caaagggtag caaagaaaag caagcagatt gaaatcccct tgaaaatcga
     4681 cgtagatgat ttgcaagaat atgaaacaat gcaagatgtc acagttgcat tagtctactg
     4741 catcgactta agctcaacta tgcgttattc ttctatgtct ggcgatatga gcagaattga
     4801 agcagccaaa agagccctat ggagtctatt tctattaaat cggagatatt tcccgtcaga
     4861 ttcaatctat gttgttggct ttggagcttt ggcgtcaaag gttgctcctt atgatattcc
     4921 atatctaaag acatttgaac cgggttctga ttttttacat tatacaaatt atcaatcagc
     4981 gtttcgactg agtaataaaa tcctccaaac tcatagtgca acaaataaac gaatagtctt
     5041 gataactgat ggccatccaa gtgcttgctt tatagataat aagaaggagc aggatgaaat
     5101 tctgtctcaa aaaccctatt ctcattttta tactgcagat aaagaaactc ttcacttttt
     5161 caaagaaaat caggatatga gccttgatat tacatcagga gaggtagtgt atctatgtta
     5221 tcgctataag catgtggatc aatatattgg tgaaagaaca attcgagaag caaaaaaatg
     5281 tcataggtta ggagttgaaa ttgacacaat tatgataagt gaagaagatt cattgctagg
     5341 ttatgtaaat gaaatggaaa aaaatgttag aggtagatca tattatatta atccaggaac
     5401 aatcgacaga gtgctcctta cagactattt gaacaacaaa aaaaagacca ttcgagctcg
     5461 tacctagcta tcagtttcaa gcctacagaa gagcaaatat tgatttggca ttacttcttg
     5521 aacgaggaca tatcatcata ttattatatt ataagttata acaggattag aatagaaaat
     5581 gatgctcgag gttgattatc ttgactggaa taatgccctt ggtgtattaa gcaaggcata
     5641 ccaaacagga ttgtttgctt tgataatagg tccaaaagga actggcaaaa caaccttggt
     5701 aaggaaattt gcatcccaag tgaaaaaaga attatactct gtaaacttca gtcttcgtac
     5761 aagagaatct cacttaattg ggacaaaaac tcttgataaa ggagaaatta gctttgtaga
     5821 gggcatcctt gtaaagtcca tgcgtaatgc tggcgtgcta tatcttgatg agctaaatgc
     5881 agccgaagca gacgtcttgt taagactaga tgaagcttta gatgatcgaa gacaattagt
     5941 ccttaaagag gctgaaggtc agctcattaa tgcggcttca gattggttcg taattgctac
     6001 aatcaatcca ttgtcgcatg tcggaacaaa ggagttgcct ccacagctcc tgagcagatt
     6061 tcctatcaga ctaagattag actatccccc agaagaagta gagcttcaga tcattagtcg
     6121 gcacacagaa gtagatagct caaaactaaa cgatgtaaaa cgtgctatta agcttgcaaa
     6181 gaatttgaga gatgcagcag ctttagaaga actatactat agtcctagtt tgagagaaac
     6241 aatcgctttt gcaaaattgc taaatacagg cattaagagc aatcaggcag cagaaattgt
     6301 atatgcaaat gtgtatgatc aatggggcga agtagaatat cgaaaggtta tggacatgat
     6361 aacatctctt tttggtgact agtgaatatg ggaagaatac agatcatctg gcatgattat
     6421 gcgaaatgat atcttgctgg acatcgcaac ctttctggcg agaaggtggt ccggtaattc
     6481 taagattgtg atcgttctgt cagaagacaa aattcctata tctaaacctg acaaaaacca
     6541 aatcatactt cctcttatca attactatcc tggaactgat tttcaaaagt atcggcaatg
     6601 gcgtgttgca ttatggtatg aatcaatgag gatgcattat tcaacaaagg tactaagtta
     6661 tgatcacgca tttggattac tgcttaatac tattgaaact aagcgtgttg agtttctcgg
     6721 atttcgtgaa tgggaaggta tggtaaagga gattattttc aacgaaagta tctcttggct
     6781 gtcccgccct cttctgaatt cgctttatgg aaggtacaag attgtcgaag cgttttcaca
     6841 atactttctg acaggatatc taaaaggcga agtatttgga agcgaatttg atagggtgaa
     6901 gaaggcctca gagttcgcaa atgagttaat tgaggaggca attaaaaaca attattcgac
     6961 taattggatt gaacaacata ttcccaagct aatcaaaatg cttgaaatag atcctctaat
     7021 gtctattccc atcattgctc caaggactag actgggtatg tcaattaacc aaagtgattt
     7081 gttaaagcag atcgaaaagg tagtcattgc caaacacaaa tatgatgaca ttgacaaggc
     7141 aacaaaaaac attatccaag gaaatgacgt gttgggagaa tttgaaaccc ttgtaaacga
     7201 aagtaaaaaa acggaaaata aaggatacga aagtctagaa aacattggtt taagtattcc
     7261 tgaaagaatg gatttggatg aaactcaaat ttatgacatc gatttaattc ggaaaataaa
     7321 ggcagcattt agagattgga gaactggttg gatagaacgg catgataaaa ctggcgagga
     7381 atttgaccct gagagttata ctgaatcact gccaaaacca tttttgacag accttaaact
     7441 ttcgattaaa acaaaagtta caattttgct ggatcactct agtagtatcg aagatgcaga
     7501 attagaatac aagcaggcaa caattgctct ctgtgaagcg ttgcattacc ttgcaataaa
     7561 atttgcagtt tatgctttta atacggaagc aagacaagta aaatgctggg tagtaaaacc
     7621 tccaaacgta aaatggtcat taattagcgc gagaagattg gtgcagataa aggcaagtgg
     7681 tgggactcca cttgcagaaa tatatggttt actaattccc gtcacaaaat cattcaagcc
     7741 agatatcatg gtcacattaa ctgatggcga accatcagat tttgatgcag tccgtgaaat
     7801 ggttctgaca tatagaaaga tgggaataaa aatggtggca ctcggggtag gtagaaattt
     7861 aaacgattct gtgggtataa ctcataatct aaagtactta aactatgaga aaacagttgc
     7921 tgtcagcagg ttacaacaca tgcctaaaaa agtcataaat ctgctgcgag cctaactttt
     7981 aattattata agacttcatt ttaacaaaat agtattaaat tggtaagaca aagacaggcg
     8041 atgggaatct taggtatgtt ttttgcaata actggtggcg ttgcttggtt ttttcaacag
     8101 acacttttcg cagtaatgct atggggtatc gcaggaataa tactatttaa a
//
LOCUS       DASQSJ010000121         2190 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_405979, whole genome shotgun sequence.
ACCESSION   DASQSJ010000121 DASQSJ010000000
VERSION     DASQSJ010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405979"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..926
                     /locus_tag="VE223_02480"
     CDS             <1..926
                     /locus_tag="VE223_02480"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HZC20487.1"
                     /translation="IATKVMEVADMEGAAAVAHGCTGKGNDQIRFDITMRSINPRLKI
                     VAPIRDMNLTRDIEIKFAEEQNIPINAIASKYSIDLNIWGRAIEGGNIEDAYLEPPED
                     AFQLVRFGNANAGYLELEFKDGIPVAVDGIYMNINSLIEYVNNKVGSYGVGIVDHIED
                     RVIGIKSREVYEAPAAIAIIEAHKDLEKMVLTKHELRFKQLVDEQWSWIIYSGLWQDP
                     LRTDLDRFIDATQTKVSGKVKLKMRRGSLCAVGRESIYSLYKNDLATFSAASNFDQGL
                     AKGFVELWGLQSIIANAVAIEGKFDQNGGRN"
     gene            910..1101
                     /gene="lysW/argW"
                     /locus_tag="VE223_02485"
     CDS             910..1101
                     /gene="lysW/argW"
                     /locus_tag="VE223_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HZC20488.1"
                     /translation="MEGEIKTKTQCQECGAEINVPDDMMIGEILTCPDCGGDFELASK
                     SETKVELKPAETVGEDWGQ"
     gene            1102..1962
                     /gene="lysX"
                     /locus_tag="VE223_02490"
     CDS             1102..1962
                     /gene="lysX"
                     /locus_tag="VE223_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HZC20489.1"
                     /translation="MIEVCVVYDKVRFEEKALYDTAKKKGLRTQIIDAKKITINNASK
                     RKTLQLGDVVLQRCISHSRGLYLTACLEFMGFVVINKFKVGETCGNKLITSLTLAKSN
                     VPTPKTHFAFSAESAIEVINMTGFPVVLKPIFGSWGRGVFPIRDEEVANMIIEMRKEN
                     DNPLSRIYYVQEMIKRPPRDLRCIVVGDKIVAAIYRYSAENEWRTNVSRGGKAELAPI
                     TNELEDIALRAAKSVGGGILGVDLMEDEKRGLLVHEVNNTVEFRGASNVSECDIAGAM
                     IDYALTIAKK"
     gene            2091..>2190
                     /locus_tag="VE223_02495"
     CDS             2091..>2190
                     /locus_tag="VE223_02495"
                     /inference="COORDINATES: protein motif:HMM:NF013298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20490.1"
                     /translation="MEVGVVGASGYVGGELLRLLICHPKVHINMVTS"
BASE COUNT          774 a          317 c          507 g          592 t
ORIGIN      
        1 tgattgcaac taaagtaatg gaagtggcag atatggaagg agccgcagca gttgctcatg
       61 gctgtactgg aaaaggtaat gatcagatta gattcgatat tacaatgcgt tctataaatc
      121 caagattaaa aattgttgca ccaataagag atatgaatct aaccagggat attgagatta
      181 aatttgctga ggaacaaaat attcccatca atgcaatagc aagcaagtat agtatagatc
      241 ttaacatttg gggcagagcg attgaaggtg gaaatataga agacgcttac ttggagccac
      301 cagaagatgc ttttcaatta gtaagattcg gcaatgccaa tgctggttat cttgaattgg
      361 agtttaaaga tggaattcca gttgccgtag atggaatata tatgaatatt aatagtctga
      421 tagaatacgt taataataaa gttggttctt atggtgttgg tatcgtagat catatagaag
      481 acagggttat tggaataaaa tccagagaag tttatgaagc tcctgccgct atcgcaataa
      541 ttgaagcaca caaagacctt gaaaagatgg tgttaaccaa acatgaactc cgttttaaac
      601 aactcgttga tgaacaatgg agctggataa tttattcagg tttatggcaa gatccactta
      661 gaacagattt ggatagattt atagatgcaa ctcagacgaa ggttagtgga aaagtaaaat
      721 taaaaatgcg aagaggatca ctctgtgcag tcggaagaga gtctatatat tctctctaca
      781 aaaatgatct agcaacattt agtgcagcat caaactttga tcagggtttg gctaagggat
      841 ttgtagagtt atggggtttg caatcaataa ttgcaaatgc agtggctatt gaaggcaagt
      901 ttgaccaaaa tggagggaga aattaagacg aagacacaat gtcaagaatg cggagccgaa
      961 attaatgttc cagatgatat gatgattgga gaaattctga cctgtccaga ctgtggtgga
     1021 gattttgaac ttgcttcaaa gtcagaaacc aaggtagaat tgaagccagc tgaaactgta
     1081 ggagaagatt ggggacagta gatgatagaa gtttgcgtag tctatgacaa ggtgcggttt
     1141 gaggagaaag cactatatga cacggctaaa aaaaaaggct taaggacaca gattatcgat
     1201 gcaaaaaaga ttaccatcaa taatgccagt aaaagaaaaa cactccagtt aggagatgtg
     1261 gtcttacaaa gatgcataag tcactccaga ggattatacc ttactgcatg cttggagttt
     1321 atgggatttg tggttatcaa taaatttaaa gtcggagaaa cctgtggtaa taaattaata
     1381 acatcactaa cacttgcaaa gtctaatgtt ccaactccaa aaacacattt cgcctttagc
     1441 gcagaatctg caattgaagt cataaacatg acagggtttc cagttgtttt gaaaccgatt
     1501 tttggttctt ggggtagagg cgtttttcca ataagagatg aagaagtcgc aaatatgatt
     1561 atagaaatgc gtaaagagaa tgacaatccg ctttcacgca tctactatgt ccaagaaatg
     1621 atcaaaagac ctccaaggga ccttagatgc attgtagtgg gagataaaat tgttgcagca
     1681 atttatcgtt attctgcaga gaatgaatgg aggacaaacg tgtctagagg gggaaaagca
     1741 gaacttgctc caataacaaa cgagctcgaa gatatagcat tgagagcagc aaaatctgta
     1801 ggaggtggta tattaggagt tgatttgatg gaggatgaaa aaagaggatt attggtccat
     1861 gaagtaaata atactgtaga atttcgagga gcttccaacg tttctgaatg tgatatcgcg
     1921 ggcgcaatga tagactatgc cctgacaatt gcaaaaaaat aaaatgttat aatttgtgat
     1981 ccaagttgta tcatattcga cagaaatata aatgaggaaa ttttaaggca atttcgggat
     2041 aacaaaattc ataagctgcg ctgttagcaa agaaaggaga attattaaaa atggaagttg
     2101 gtgtagttgg tgcatcaggc tatgtcggtg gagagctatt gcgtttactt atctgtcacc
     2161 caaaagttca catcaacatg gtaacatcca
//
LOCUS       DASQSJ010000122         6490 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_452877, whole genome shotgun sequence.
ACCESSION   DASQSJ010000122 DASQSJ010000000
VERSION     DASQSJ010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6490
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452877"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..1458
                     /locus_tag="VE223_02500"
     CDS             238..1458
                     /locus_tag="VE223_02500"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HZC20491.1"
                     /translation="MVNDKAVLAYSGGLDTSVCIRYLQKLYHFDVITVTVDCGQNDDF
                     KEIERKARAIGAIKHIYIDAKEEFALNYVIPSIKANGLYQSKYPLATALARPLIATKV
                     MDVANIERAAAVAHGCTGKGNDQIRFDITMRCLNPKLKIVAPIRDMNLTRDAEIKFAE
                     EQSIPINTVASKYSVDLNIWGRSIEGGDIEDAYLEPPEEAFQLVKFNDDNTGYIELEF
                     KDGSPIAVDGKYMNINNLIEYVNKKVGAFGVGIVDHIEDRVVGIKSREIYEAPAAIAI
                     IEAHKDLEKMVLTKHELRFKQLVDEQWSWMIYSGLWQDPLRIDLDRFIDETQTKVSGK
                     VKLKMRRGALSVIGRESAYSLYKNDLATFSTGSTFDQGLAKGFVELWGLQSVTANAVV
                     TEVKFDQNGGKNSR"
     gene            1455..1628
                     /gene="lysW/argW"
                     /locus_tag="VE223_02505"
     CDS             1455..1628
                     /gene="lysW/argW"
                     /locus_tag="VE223_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HZC20492.1"
                     /translation="MKTQCQECGAEINVPDDIMVGEILTCPDCGGNFEIASKSEGKIE
                     LKPAETIGEDWGQ"
     gene            1629..2489
                     /gene="lysX"
                     /locus_tag="VE223_02510"
     CDS             1629..2489
                     /gene="lysX"
                     /locus_tag="VE223_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HZC20493.1"
                     /translation="MVKVCVIYDKVRFEEKALYDTAKKKGIKAQIIDAKTITVNNESQ
                     RKTLELGDVVLQRCISHFRGLYLAACLEFLGFIVINKFKVGETCGNKLITSLTLAKSK
                     IPTPKTHFAFSAESAIEVINTTGFPIVLKPIIGSWGRGVFPIRDEEVANMIIEMREEN
                     DSPLARIYYVQEMIKRPPRDLRCIVVGDKVVTAIYRYSAENEWRTNVSRGGKAEVAPI
                     TNELEDIALRAAKAVGGGILGVDLMEDEKRGLLVHEINNTVEFRGASNVSEADIAGAM
                     IDYALTIAKR"
     gene            2621..3673
                     /gene="argC"
                     /locus_tag="VE223_02515"
     CDS             2621..3673
                     /gene="argC"
                     /locus_tag="VE223_02515"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HZC20494.1"
                     /translation="MEVGVVGASGYVGGELLRLLISHPKVHINMVTSRQKAREYVHRI
                     HPSLKGFIDLTFSPMDMEKLANSCDIVFTAVPHGMANKIVKDLYDRGIKIIDLSADFR
                     LKNPKDYIKWYGWEHPFPELLSKSTYGVPELHRDEIKKSQLVSCPGCMAVTSLIAIKP
                     LIEHNLIETDHIVVDSKIGSSGAGTKLNAGTHHAMRYGVIRPYKPVKHRHTGEIEQEL
                     GLVAKKEIKVSMSPHAVNIVRGILTTNHTFLKKMINELELWKIYRNSYKSEPFIRFIH
                     DKKGLYKFPDPKFVIGSNFCDIGFDIDDDNQRLVALSASDNLMKGAAGSAIQNMNIML
                     GYEEMDGLKYTSLTPV"
     gene            3670..4473
                     /locus_tag="VE223_02520"
     CDS             3670..4473
                     /locus_tag="VE223_02520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[LysW]-aminoadipate/[LysW]-glutamate kinase"
                     /protein_id="HZC20495.1"
                     /translation="MIVVKIGGSVVNGLHSTALSDIKRLVKKDRLVLIHGGGKEVTNI
                     ATKLGKEQKFIISPSGVKSRYTDKETAEIYTMVMSGKINKAIVGMLLHEGIKAVGIAG
                     IDGSLLKAERKKKLLIINEKGRKMAIDGGYTGKICAVDPSLINTLLNAEYVPVVSPVA
                     LSEEYDALNVDGDRAAAYVAGGLKANKILFVTNVSGLILNDNLVTNMTVDQAKIALPK
                     IGYGMEKKIIACIEAIEMGVKESIIASGQVENPISSAIEHNNCTVITAN"
     gene            4470..5651
                     /locus_tag="VE223_02525"
     CDS             4470..5651
                     /locus_tag="VE223_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HZC20496.1"
                     /translation="MNGEDQYLSNLYQRFPINIALGKNANIWDTSGKEYVDCMGGYGV
                     ALVGHCNNRIVKAIKDQAEQLIICHMSAYNDTRLRFLQRLSSLAPKGLNKTFFSNSGA
                     EAVEAALKFTRKYTGKIGIIAMNGAYHGKTFGALSVTHNEKYRRSFMPLLSGVKFVPY
                     NDSSKVQEAIDDNTGAVILEPIQGETGIIVPPDGLIQRIREICNSHKLVLIFDEIQTG
                     LGRTGKMWAGQNWGTTPDIMCLAKGIAGGLPMGLTLVKPEIIEAMKVGEHSSTFAGSP
                     LACAAGIATLDALVEDKLVENASRTGKYFKDGLLALSDKHKIIREVRGLGMMLAVELR
                     FDVKDILFDGIRNGLLMLYSGRNIIRLLPPLVIDERSVDRALEIMDRLFTREEQRRNV
                     S"
     gene            5641..6066
                     /locus_tag="VE223_02530"
     CDS             5641..6066
                     /locus_tag="VE223_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HZC20497.1"
                     /translation="MSADLDSVDEKIIEALQKDSRKSFVEIASEIRLSESAVRRRVKN
                     LIDSRIIKRFTIEINARDRTSAIALISVNSSADTNIVSSKLMNLKGVEVIYEITGQYD
                     IAAIISAPSITEINKCIDDVRKTEGVYDTNTVIILKTIR"
     gene            6205..>6490
                     /locus_tag="VE223_02535"
     CDS             6205..>6490
                     /locus_tag="VE223_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20498.1"
                     /translation="MSYLKNKMSLKPDDPNYYAHLYNGFGNNRIVGSKPTIRILDSTL
                     REGEQHPGVSFTKKQRIQVAWMLDSFGVDQIEISPIVSPDHFEATKTIIKQ"
BASE COUNT         2268 a         1009 c         1406 g         1807 t
ORIGIN      
        1 acctagatat taatttgtcg agccaatatt tgatctattt gtgatttgat tattcttata
       61 agtgtacact catgttacaa tattctactg caaagaatct tggaaagtca ttatttagaa
      121 tatattttat aattagtaaa ttgatttcta atccagcagc attgatcagt tgttattatt
      181 atttgattcc tgaccaaaaa atataaatgt agtactatta atcgcaacgc gtaatacatg
      241 gtaaacgata aagcagtact tgcatattct ggtggattag atacttcagt ctgcatcaga
      301 tatttgcaga agttatatca ctttgatgtt attactgtaa cagtcgattg tggacaaaat
      361 gatgatttta aggaaattga aagaaaagcg agggcaattg gtgcaataaa acacatctac
      421 attgacgcca aagaagaatt tgcactaaat tatgttattc catctattaa ggcaaatgga
      481 ttgtaccaga gcaagtatcc tttggcaact gctcttgctc gaccactaat tgcgactaaa
      541 gtaatggacg tggcaaatat agaacgagct gctgccgttg ctcatggatg tactggaaaa
      601 ggcaatgatc agattagatt tgatattacg atgcgatgtc taaatccaaa attaaaaatc
      661 gttgcaccaa taagagatat gaacttgacg agagatgcgg agattaaatt tgctgaggaa
      721 caaagtattc ccatcaatac agtagcaagc aagtatagtg tagatcttaa tatttggggg
      781 aggtctattg aaggtggaga catagaagat gcttatttgg aaccaccaga agaagctttt
      841 cagttagtaa aattcaacga cgataatacc ggttatattg aattagaatt taaggatggc
      901 tccccaattg ctgtagatgg aaaatacatg aatattaata atctaataga gtacgttaat
      961 aagaaagttg gtgcttttgg agtaggtata gtagaccaca tagaagatag agttgttgga
     1021 ataaaatcca gagaaattta cgaagctcca gcagctattg caataattga agcacacaaa
     1081 gatcttgaaa agatggtgtt aaccaagcac gaactccggt tcaaacaact cgttgatgaa
     1141 cagtggagct ggatgatcta ttcaggttta tggcaagatc cacttcgaat tgatttggat
     1201 agatttatag atgaaactca gaccaaagtt agtggaaaag taaaattaaa gatgagaaga
     1261 ggcgcactca gtgtaattgg aagggaatct gcatattctc tttacaagaa tgatttagcc
     1321 acatttagta cgggatcaac ctttgatcag ggtttggcga agggatttgt tgaactatgg
     1381 ggcttgcaat ccgtaactgc aaatgcagtg gttactgaag tcaaatttga ccaaaatgga
     1441 ggcaaaaact caagatgaag acacaatgcc aagaatgtgg agctgaaatt aatgttcccg
     1501 atgacataat ggttggagaa atactgacat gtcccgattg tggtggtaac tttgagattg
     1561 cttcaaaatc agaaggtaag atagaattga aaccagccga aactatagga gaagattggg
     1621 gacaatagat ggtaaaagtt tgtgtaatct atgacaaggt gcggtttgag gagaaagccc
     1681 tttatgatac ggctaaaaaa aaaggtataa aggctcaaat cattgacgca aaaacgatta
     1741 ccgtcaataa tgagagtcaa agaaaaacgc tcgaattagg agacgtggtc ttacaaagat
     1801 gtataagtca cttcagagga ttataccttg ctgcatgctt agaatttttg ggattcatcg
     1861 ttatcaataa atttaaagtt ggagaaactt gcggtaataa actaataaca tcactaacac
     1921 tggcaaagtc taaaatccca actccaaaaa cacatttcgc ttttagcgca gaatctgcaa
     1981 tcgaagtcat aaacacgaca ggctttccaa tagttctgaa accgattatt ggttcctggg
     2041 gtagaggagt atttcccata agagatgaag aagtggcaaa tatgattatc gagatgcgtg
     2101 aagaaaatga tagtcccctt gcacgtatct attatgttca agaaatgatc aaaaggcctc
     2161 ccagggatct tagatgtatt gtagtaggag ataaagttgt tacagcaatc tatcgttatt
     2221 ctgcagagaa cgaatggagg acaaacgtat ctagaggagg aaaagcagaa gttgctccaa
     2281 tcacaaacga acttgaagat atcgcattga gagcagcaaa agctgtaggg ggtggcatat
     2341 tgggagttga tttgatggaa gatgaaaaaa ggggactatt agttcatgaa ataaacaata
     2401 ctgtagaatt ccgaggagct tccaatgttt cagaagctga tattgctggc gcaatgatag
     2461 attatgcact gacaattgca aaaagatgaa ttttataatt agtgataagt tgcatgtata
     2521 tccgatacga tatacaagca taaggcaatt acttcccttc aacttcgata acaaaattca
     2581 taagccactc tgttagctaa gaaggagaga actattagaa atggaagttg gtgtagttgg
     2641 tgcatcaggc tatgtcggtg gagaactatt gcgcttactt atttcccatc cgaaagttca
     2701 cattaatatg gtaacgtcaa gacagaaggc tagggaatac gtgcatcgca ttcaccctag
     2761 tctgaaaggt ttcattgatc ttactttttc accaatggat atggaaaagt tggctaattc
     2821 ctgtgatata gtatttaccg cggttcctca tggtatggct aataaaattg tgaaagatct
     2881 atatgataga ggcataaaga taattgatct gtctgcagat tttcgtttga agaatccaaa
     2941 ggattacata aagtggtatg gatgggaaca ccctttccca gaattgttgt ctaaatcaac
     3001 atacggggtt ccggagctgc acagggatga gattaaaaaa tcacagttag tttcatgccc
     3061 cggatgtatg gcagttacat ctttaattgc aataaaacca ttgatcgaac ataatttgat
     3121 tgaaacagac catattgtag ttgacagcaa gatcggctca tcaggtgcag gtaccaaatt
     3181 aaatgcagga acacatcatg ctatgcgcta tggtgtaatt agaccataca aaccagtaaa
     3241 acacagacac acaggagaaa ttgagcaaga attaggactt gttgccaaga aagaaattaa
     3301 agtaagcatg agtccccatg cagtaaacat cgttcgaggt attcttacta caaatcatac
     3361 attcttaaag aaaatgatta atgaactaga actgtggaag atatatagaa attcttacaa
     3421 aagtgaacct ttcataaggt ttatccatga caagaaaggc ctctacaaat ttccagatcc
     3481 caagttcgtg attggctcga acttttgcga cataggattt gatattgatg atgacaatca
     3541 aagacttgta gctctatccg catctgataa tttgatgaaa ggagctgcgg gatctgccat
     3601 acagaatatg aatataatgc ttggttatga ggagatggat ggattgaaat atacttcact
     3661 tactccagta tgatagtagt caagattggt ggcagtgtag taaacggact ccattctaca
     3721 gcactatctg acatcaaaag attagtcaag aaagatagat tggttcttat ccatggtggc
     3781 ggtaaagaag ttaccaatat tgcaacaaaa ctcggcaaag agcaaaagtt cattatttca
     3841 cccagtggag taaagagtag atacactgac aaggagactg ctgaaatcta tacaatggtt
     3901 atgtccggta agatcaataa agcaattgtg gggatgcttt tgcatgaagg cataaaggct
     3961 gtcggtattg cggggataga tggtagcctt ttaaaggctg aacgcaaaaa aaaacttttg
     4021 ataattaatg aaaaaggtag aaagatggca attgatggcg gatatacagg aaaaatatgt
     4081 gcagtcgatc catcattaat taatacgcta ctaaacgcgg aatatgttcc tgtagtttca
     4141 ccagtggcat taagcgaaga atatgatgct ctcaatgtag acggggatcg agctgcagca
     4201 tatgttgctg gtggactaaa agctaacaag atcttatttg tcacaaatgt tagcgggttg
     4261 atattaaatg ataatcttgt tacaaacatg acagttgatc aggcaaagat agcattacca
     4321 aaaattggat atggtatgga aaagaagatt atcgcttgta ttgaagcaat agaaatggga
     4381 gttaaggaat ccataattgc gtcaggtcaa gtagagaacc ctatttcatc ggctatagag
     4441 cataataatt gtacggtgat cactgccaat tgaacggtga agaccagtat ttatctaatc
     4501 tttatcagag atttcccata aacattgcac tcggtaaaaa tgcaaacatc tgggatacgt
     4561 ctgggaagga atacgttgat tgtatgggag gatatggtgt tgcacttgta gggcattgta
     4621 ataacaggat tgtaaaagct atcaaagatc aagctgagca acttataata tgtcatatgt
     4681 ctgcatacaa tgatactaga ctaaggtttc tgcaaaggtt atcgagcttg gctccgaagg
     4741 ggttaaacaa aacgtttttc agcaatagtg gtgcagaagc agtagaagca gcattaaaat
     4801 tcacacgtaa gtatactgga aaaataggca taattgctat gaatggtgca tatcacggaa
     4861 agacatttgg agcactttca gtaactcata acgaaaaata cagaaggtca tttatgccac
     4921 ttttaagcgg tgtgaagttc gttccttata atgattcttc caaagtacag gaagcgattg
     4981 atgacaatac aggagctgta attttggaac caattcaagg agaaacagga ataattgtcc
     5041 caccagacgg tctaatccaa cggattagag aaatttgtaa tagtcacaaa ttagttttaa
     5101 tattcgatga aattcaaacc ggtttaggca gaacaggtaa gatgtgggca gggcaaaact
     5161 ggggcactac tccggatatc atgtgtctgg ctaaaggaat agctggtggg cttccaatgg
     5221 ggttgacgtt ggtaaaacct gaaatcatag aagcaatgaa agtaggcgag cattcttcta
     5281 cctttgctgg gagtcctctt gcatgcgctg caggtattgc gactcttgat gcattagtag
     5341 aagataaact agttgaaaat gcctcaagaa caggtaaata tttcaaagat ggtcttctag
     5401 ctcttagcga taaacacaaa ataataaggg aagtcagagg tttaggtatg atgttagcgg
     5461 tagaattgcg ttttgacgta aaggatatac tgtttgatgg gataagaaat ggattattaa
     5521 tgttatattc aggaagaaac ataattagac tacttcctcc acttgtaata gatgaaagat
     5581 ctgtagatag agcattagaa ataatggatc gcttgtttac cagagaggag cagaggagaa
     5641 atgtcagctg accttgattc tgttgatgaa aagataatag aagctttaca aaaggactct
     5701 cgcaaatcgt ttgtagaaat tgcaagtgag atcagattat ctgaatctgc tgtaagaagg
     5761 cgtgtaaaga atcttattga cagcaggatt attaagagat ttaccattga gattaatgct
     5821 agagatagga caagcgcaat agcacttatt tcagttaatt ctagtgctga tacaaacata
     5881 gtttcttcca aactgatgaa tcttaaaggt gttgaagtaa tctatgagat cacaggacaa
     5941 tatgatattg cagcaatcat ctccgcacct tcaatcacag agattaacaa atgtattgat
     6001 gatgtacgca aaacagaagg tgtatatgac actaatacag taatcattct taaaactatc
     6061 agataaaatg ttgtttgttg tagccacttt ttgtttatat gttatcgaag ttcggtctat
     6121 taaagtagta gatgtgcgga tacaataaaa aagacaatgt atttgaacga acttagttgc
     6181 gaaaacgttt atatcacttg cgaaatgagt tatttgaaga ataaaatgtc gctaaaacca
     6241 gatgatccca actactatgc gcacttgtac aatggatttg gcaataacag aatagtcggc
     6301 tctaaaccga caatcagaat cctagactct acactcagag aaggagaaca acatcctgga
     6361 gtttcattca caaaaaaaca aagaattcaa gttgcatgga tgctcgattc ctttggcgtt
     6421 gatcaaatag agatcagtcc catagtatca cctgatcatt ttgaagctac aaaaaccatc
     6481 ataaaacagg
//
LOCUS       DASQSJ010000123         3478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_94973, whole genome shotgun sequence.
ACCESSION   DASQSJ010000123 DASQSJ010000000
VERSION     DASQSJ010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3478
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94973"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..326
                     /locus_tag="VE223_02540"
     CDS             141..326
                     /locus_tag="VE223_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20499.1"
                     /translation="MIVKSADPVIHEGASLKKMLNEVESLLSNGYKLITITECNGEIF
                     VFLLNESELSGMRETHS"
     gene            complement(531..1919)
                     /locus_tag="VE223_02545"
     CDS             complement(531..1919)
                     /locus_tag="VE223_02545"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HZC20500.1"
                     /translation="MSEKIRSGEISPVDLVEVCLNKIKKFNPILNAFITIVEQEEIYR
                     EAQIAEKQIKQGKYFGHLHGIPFSIKDIFCAKKVRCTAGSKMLSDYIPDFDATVVKKM
                     KAAGGILIGTNNLNEFASGITGINPFYGSSKNPWNISRISGGSSGGSAVAVASGMTPI
                     SLGSDTGGSIRVPASLCGVVGLKPTYGRTSRYGLIPLAPSFDHVGCLTRSAWDAAAVL
                     ECISGSDPSDQTSVQNKIPFYTDIVEKESVDKRICVKVPNRYFFDSLHLEVENLFYNF
                     MQKLTNATINDVNLPNTEKYYKSWRDIRLAEAAEIHFTSLRARSNDYSSEVRNMLIEG
                     TKISAVDYLHAKSITKKIRGDFLSILNKDTDVIIVPTTTIPAPEFDEKTISIGDRLFE
                     IREALLRNTIIFNSTGLPSLSIPIGLTKDKMPIGVQIIGSPFKEDVILSIAYNYERVN
                     NIADTFVPALSD"
     gene            2395..3390
                     /locus_tag="VE223_02550"
     CDS             2395..3390
                     /locus_tag="VE223_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HZC20501.1"
                     /translation="MFSRGEVDDVSQKLETITNQSLTWINVQNPTRSIIDKIGQRYSF
                     HELNLADCLSKIQIAKIDKYKDYIFLILHFPTIEKKEKGSTTTLRVNQLAIFAGINIV
                     VTIHGGDLRPVQEMFNLCKQSDVQRKTQMGGSSGYLLHSIIDTLVDDLLHLLMKVAGN
                     LEDIEDAVFDDKITVVKEISVLRRDITTLRRVVIPLKRTVLEMTKDIQKFSDEDLTQY
                     FDDVKDHIDKVVEALDESKETIEIYKDTDFMLSTEKTNKILAILTILFTLSIPITVIG
                     TFYGMNVNLPGGIQTGSWNFFGTYTTLIVVLMTSIVSVLLMLWYFRRLGWVEFSH"
BASE COUNT         1134 a          595 c          648 g         1101 t
ORIGIN      
        1 aaaaatatgc agtcaaaggt gtttgctcag tcagcaaaga atttatcttg agttagtcaa
       61 actaatcaat tagtttgact aacttcaaat aatgggcaaa tggtagacaa agcatgacaa
      121 actggcatga gagtcagcta atgatagtga agagtgctga ccccgttata cacgaggggg
      181 caagtcttaa gaaaatgcta aatgaagtag agtcgctttt gtctaatggt tataaattaa
      241 taactataac agaatgtaac ggagaaatat ttgtgttttt attgaatgag tcagagctaa
      301 gcggtatgag agaaacacat agctgatctc atgatgaggt atgttagatg gtgtcctgga
      361 gataagcagc agacttggtc aaggtataat caggtaaaaa taacttccaa caaaagcata
      421 ccttaacgct caagtataaa acacattcga agttacttat cattagtaat aaatgctaat
      481 tttgctagcc atgagacagt tctcttatga ttactctgaa aagacaagac ttagtcactt
      541 aatgcaggta cgaacgtatc tgcaatatta ttcacacgtt cataattata tgcaattgac
      601 agaattacat cttccttaaa tggagaccca attatctgta ctcctattgg cattttatct
      661 ttggttaacc ctatagggat actaagcgaa ggtagaccag tactattaaa tattattgta
      721 ttacgaagta gagcttcacg aatttcaaaa agacggtcgc caatgctaat tgttttttca
      781 tcaaattcag gagcaggaat agtggtagtt ggaacaataa taacatcggt atccttattt
      841 aatattgata ggaaatcacc ccttattttt tttgtaatac ttttagcatg cagatagtcc
      901 actgcagata tttttgttcc ttctattaac atatttctta cttcactgct gtaatcattg
      961 gatcttgctc ttagactcgt aaagtgtatt tctgcagcct cagcgagcct tatatctcgc
     1021 caagacttgt aatatttctc tgtattgggt aaatttacat cgttaatggt ggcgttagtt
     1081 aacttttgca taaaattgta aaagagattt tctacctcta aatgcaagga atcaaaaaag
     1141 tacctgtttg gtactttaac acaaattctt ttatctactg attccttttc aacaatatct
     1201 gtatagaatg gtattttgtt ttgcacagat gtttggtctg aaggatctga gcctgatatg
     1261 cattccaata cagctgctgc atcccatgca ctccttgtaa ggcaaccaac atggtcaaaa
     1321 gatggcgcca aaggtataag accatatctg ctggttctac cataggttgg ctttaggcct
     1381 actacgccgc aaagcgaagc tggtactcga attgaacctc cagtatcaga tcctaatgaa
     1441 atgggagtca tacctgatgc gactgcaaca gctgatccac cactggagcc accagatatt
     1501 ctggagatat tccacggatt cttagaagaa ccgtaaaaag gatttattcc tgttatacca
     1561 gatgcgaatt catttaaatt gtttgttcca attagaattc caccagctgc cttcattttt
     1621 ttaactactg ttgcatcaaa gtcgggaata taatcagaca acatctttga tccagcagtg
     1681 cacctgactt ttttcgcaca gaaaatatct ttgatagaaa atggaatgcc gtgaagatga
     1741 ccaaaatatt ttccttgttt gatctgcttc tcggctattt gagcttccct atagatctct
     1801 tcctgttcaa ctatagtaat aaaagcattc agtattggat tgaatttctt gattttgttt
     1861 aagcagactt caactaaatc taccggcgat atttctccgc tccttatttt ctctgacaaa
     1921 ttcttaactg agaatgttga tgaggttagc ttttttgcca tgatgttagc gaaacatact
     1981 atattgaact tattaaaatt agaagtcgca tttgcagtct tcgatattcc tttctgaaga
     2041 gtcgtgtttg tatacctttc tataaatttg gcaaattttc aagtatttga ggaaaaagct
     2101 tttgtaaatg tatcgacaga tatccaccgc tttagctcat attgagaatt cctattgctg
     2161 tactaacaac aggaatcttg aatcagatgc agcagatttt tgtgtaatga tatcgcgatg
     2221 gatacctatc tataaatcgt gaaaacctcg catcaacgaa acacagatta tactgcatct
     2281 aaatcgtcat atcaagactt tttaccaatt atgatgcatg gacatcctat atttaaccta
     2341 aaatttgttg ctaacataaa ttaaaggaga ctagaatacg ttaataatag cgctatgttt
     2401 agcagaggtg aagtagatga tgttagtcaa aagttagaaa caataaccaa tcagagcttg
     2461 acatggataa atgtacaaaa tcctactcgt agtatcatag acaagattgg acagaggtat
     2521 tcattccatg agttaaacct tgcagactgt ctttcaaaaa tacaaattgc gaagatagac
     2581 aagtacaagg attatatttt cttgatactt cattttccaa ctatagagaa aaaggaaaaa
     2641 ggaagtacaa cgacattaag agtcaatcaa ttagctattt ttgcaggaat aaatattgta
     2701 gtcaccattc atggtggaga tcttaggcca gttcaggaga tgttcaattt gtgtaaacag
     2761 agtgatgtgc agcgtaaaac gcaaatggga ggatcatctg gctatctgct tcatagtata
     2821 atagatacat tagtagatga tctgcttcat ttattaatga aggtcgcagg aaatctagaa
     2881 gatatagagg acgcggtatt tgatgataaa ataacagtgg taaaagaaat ctcggtctta
     2941 agaagagata ttacaactct gaggcgagtc gttattccac ttaaaagaac tgtattggag
     3001 atgaccaaag atatacaaaa attttctgat gaggatctaa cgcaatactt tgatgatgta
     3061 aaagatcata tagataaagt ggtagaggct ttagatgaat ccaaagaaac tatagaaatc
     3121 tataaagaca cagatttcat gctgagcaca gaaaaaacaa acaaaatact tgctatcctt
     3181 acaatcctgt tcactctgtc tatccctatt actgtaatag ggactttcta tggaatgaat
     3241 gttaatttac ccggtgggat tcaaacaggt tcttggaatt tcttcggaac atatacaact
     3301 ctaatagtgg tcctgatgac atcaatcgtc tctgtactgt taatgctttg gtatttccgg
     3361 cgccttggct gggtcgaatt ttctcattag tttacatagg atagcacaag gattgttgct
     3421 ctgagatgta cgcaaagtct gtaggagttt cattttggcg aaggtattat aattgcac
//
LOCUS       DASQSJ010000124         4206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_246166, whole genome shotgun sequence.
ACCESSION   DASQSJ010000124 DASQSJ010000000
VERSION     DASQSJ010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4206
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246166"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..1111)
                     /locus_tag="VE223_02555"
     CDS             complement(74..1111)
                     /locus_tag="VE223_02555"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20502.1"
                     /translation="MRKIRNITLLGIPLVITITMVVAISMRPTVQQQPIIAQALYSNK
                     SSSPMLQEFLVPAGSHPHDVAPAADGTVWYTAQGSGELGLLDPKTGKTHSMALGKGSA
                     PHGVITGPDGAAWITDGGLNAILRVDPRTEKLRLFPLPNGSNNANLNTATFDHSGVLW
                     FTGQSGIYGRLDPVAGMVQVFRAPRGTGPYGITTTPDGSIYYASLAGSYIARIDLKNQ
                     NAKVINPPTPDQGARRIWSDFHGRLWVTEWNAGKLALYDPATSKWKEWRLPGKNPLPY
                     AVYVDKSDTVWLSDFGANAIVKFDPLKERFDTIPLPTPAANVRQISGRSGEIWGAESG
                     ADKLVVIRTGY"
     gene            complement(1852..2877)
                     /locus_tag="VE223_02560"
     CDS             complement(1852..2877)
                     /locus_tag="VE223_02560"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HZC20503.1"
                     /translation="MAYRSSSSQTSNFADMLVNQKGSGTQAIVGIIVLVIGIGVGQVL
                     KNDLVTYISIVIGVAIIFSSFLIIIKQYERAIILRLGKYQRQVGPGIQKRIPFADNVL
                     VVDVREKVREFKAERMLTKDNIPVTIDAILRYKIIETRSKDALLNVENFNEMIQQVSQ
                     TTLRNNIGSSLFQDVLSKREEINQNIKSIISKEASNWGMELTGVEIRQVIIPQELESA
                     MSMQAQAEREKSARITYGESEIQVAQRFLDASKIYADNPMAYALRQSNMLYESMKIQG
                     NTIIMIPSETLNSMGFGNLAMTIGYLDNVKNALKAGTRPAAVGASRPDQTKESVSSSA
                     SSVGVTP"
     gene            3080..3313
                     /locus_tag="VE223_02565"
     CDS             3080..3313
                     /locus_tag="VE223_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20504.1"
                     /translation="MNDKVRPLTAIPILVTLIITPLVVVTTLHMVLAQDQNPPTTGKT
                     TPNVTSTFGPNLPKTSSSPAGNRTSNEIGNMTK"
     gene            complement(3681..3965)
                     /locus_tag="VE223_02570"
     CDS             complement(3681..3965)
                     /locus_tag="VE223_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20505.1"
                     /translation="MSIGKSQSALDDSSSSVKASVSRQQSIFLLCERCHWCATYIDKS
                     RLPADNRCQQCSNTDVLSSFPILSNESFTFDYNEKRGVELEFKPRKTMTK"
BASE COUNT         1231 a          844 c          757 g         1374 t
ORIGIN      
        1 tacagagatt gaggcgcatt catccatcaa gagaaaatag ttatggcttc gattcgaaaa
       61 gtgcataacc tattcaatac cctgtcctaa tgactaccaa tttatccgcg ccagactctg
      121 ctccccatat ttcccctgat cttcctgaaa tctggcgcac gttagctgcc ggtgtaggca
      181 gaggtattgt atcaaatctc tctttgagag gatcaaattt cactatggca tttgctccaa
      241 agtcacttaa ccataccgtg tcactcttat ctacataaac agcatatggc agtggattct
      301 ttccgggtaa tctccattct ttccatttgc tagttgccgg atcgtaaagc gccagtttac
      361 ctgcattcca ctcggtaacc caaagtctac catggaaatc agaccaaata cgccgagctc
      421 cctgatcagg tgtcggtgga ttgatcactt tagcattttg gtttttcagg tcgattcgag
      481 caatataact tccagctaat gaggcatagt agatactacc atctggagtt gttgtaatac
      541 catacggtcc agtcccacga ggggctctaa atacctgtac cattccagca acagggtcaa
      601 gtcggccata aataccgctt tgtccagtaa accataaaac gccactatga tcgaaggtag
      661 ctgtgtttag attagcattg ttgctgccgt tggggagagg gaaaagacgc aatttttcgg
      721 tcctaggatc aactcttagt atggcattaa gcccgccatc tgtgatccaa gcagcgccat
      781 ctgggccagt aattacacca tgaggagcag agcccttacc aagcgccata ctatgggttt
      841 tgccagtttt tggatcaaga agtcctaatt cacctgaccc ctgagcggta taccatacag
      901 ttccatccgc tgcaggagca acatcgtgcg gatgtgaacc tgccggaaca agaaattctt
      961 gaagcattgg actagaagat ttgttagagt acaaggcttg tgcaattatg ggttgctgct
     1021 gtactgtcgg tctcatactt atagccacga ccattgttat tgttattact aatggaatgc
     1081 caagaagtgt tatattcctt attttcctca ttaacttctt agcaagactg tacaatatat
     1141 taataactaa gtatttgatg acattgtttt cgatattctt tatatctttg tgagtatatg
     1201 cttcacgatc tttattctta tgaagacgaa actatgagta agcatataac aacggttgat
     1261 agatagatgt aatttcgcta actctgatgg cgatcacttc ctattgcatg accaattaag
     1321 ggctttctag atccccgtta acctgtaaaa gatataccga atggctaagg gtattacaac
     1381 caggactaga gccgtaacta tacttattgt ttgagatatt ataattatta aaaagataag
     1441 cactatcata attatgaagg cagtgaatag tactccgaac aattttttaa aatttacctg
     1501 cgccatttac catttttctt taattgtaaa tccaaagtca ttgatatgtt ttgtatgtga
     1561 gcagatgaca aggtaaatac caatatgaaa tttttaatct ggttttatcc attttcatat
     1621 atagcgtgta atagcgattg caaaaactac cattttccag agcatctatt ctgttcttgc
     1681 tgaggcctgg tcgtcattaa gatcataata taaacgcatc cttgtttgag acccaaaaaa
     1741 agtctaggaa cgaatttctg aaaagtacac tataccatct agttaataga agacgaacca
     1801 ggaagaattt ggagttgcta tctgagaaag gagcgataat aaactatgat tctatggagt
     1861 cacccctacg gatgatgccg atgatgatac tgactcctta gtctgatctg gacgtgatgc
     1921 accgactgcc gccggtctgg ttccggcttt aagtgcattt tttacattat ctagatatcc
     1981 aatagtcatt gccaagtttc caaagcccat tgaattgaga gtctccgaag gaatcatgat
     2041 tattgtatta ccctgaattt tcattgattc atacagcata ttagattgtc ttaatgcata
     2101 ggccattgga ttatccgcat aaattttaga tgcgtccaga aatctctgcg ctacttgaat
     2161 ttctgattcc ccgtaagtta tcctagcgct tttctcacgt tcggcttgtg cttgcattga
     2221 cattgcagat tccaactctt gcgggataat tacttgtcgg atctctactc ctgttaactc
     2281 cattccccaa ttactagctt cttttgaaat aatggattta atattttgat taatctcttc
     2341 tctctttgat aatacatctt ggaataaaga agaaccaatg ttgtttcgca gtgttgtttg
     2401 agaaacttgc tgtatcattt cattaaaatt ctctacgtta agaagagcat cttttgatct
     2461 tgtttcaatt attttgtatc taagaattgc atcaattgtt acaggaatat tatcttttgt
     2521 aagcattctt tcggccttaa attctcttac tttctccctt acatctacga ccaatacatt
     2581 gtccgcaaat ggtatccttt tctgaatgcc tggaccaact tgtctttggt attttcctag
     2641 tcttaatatt attgctctct cgtattgttt tatgattatc aaaaaggatg aaaatattat
     2701 agctacgccg ataactattg atatatacgt caccaagtcg ttttttagta cttggccaac
     2761 cccaataccg ataactagaa caattattcc aacaatagct tgggttcccg atcctttttg
     2821 gttaacaagc atatcggcaa aattagatgt ctgagaagat gatgacctgt atgccatata
     2881 ttactatgtg cgatgagggt taagaactta gtggtataag agtcacttca ttggatttga
     2941 tatgttgctg ctgatcatac aattaaaggt ttatagtcat gactctaatc gcctgatact
     3001 cttataataa acgtgattgt ttccgtctga tacattagat taattgaata cttataaaga
     3061 atatcgcttg aatatttaca tgaacgacaa agtgcgacca ttaactgcaa ttcctatcct
     3121 ggttacatta attattaccc cactagtagt agtcacgaca ttgcatatgg ttttggctca
     3181 ggaccagaac cctcctacta ctggcaagac aacaccaaat gttacctcta ctttcggccc
     3241 taatttgcca aagacttcat catcacctgc cggcaatagg acatcgaacg aaattggaaa
     3301 tatgaccaaa tagcagatag aattattaca acatctaact catttatcga acttgttact
     3361 attacaatat taggaagtcg gtttgttagt cttctaaatt tgtattagat agatcccaag
     3421 atctgaatcg acagctaagg attatgagat tgatatttcg catggtcccg atataattgt
     3481 caagatgagc ccaatacaaa agtacgctat ttaatccata aatacgttag gacttattta
     3541 tccgttattc tagctagcac ctgggttgtt accacccaat gttacgatta gaaaacatcc
     3601 ttggtataca agcttatatt gtaaagactc caaatgtcac gccctttgta atatcaaggt
     3661 taattataac agtgcagccg ttatttggtc attgttttcc taggcttaaa ttctaattct
     3721 acccctcttt tttcattgta atcaaaagta aatgattcgt tggatagtat aggaaagctt
     3781 gataacacat ctgtattaga acattgttga catctattat cggcaggtag tcggctttta
     3841 tcaatatagg ttgcacacca gtgacacctc tcgcagagaa ggaatattga ttgctgtctt
     3901 gagacagacg ctttaacact tgaagaacta tcatctaatg cggattgcga ttttcctatt
     3961 gacattttct aagatcatag ataaacgata taaaaataac ctatataagt acttcaacca
     4021 gaaggtataa tattctatac attgctaaat cttacctgat gagttcttgt actggttcga
     4081 gccttgtctg tgccatggct tgccaattac gttacttatt taacccctgc agctctgacc
     4141 gcaagtaatt ggcattagaa agatcatatt tggactgtat tggtagagat ctgtttctag
     4201 attcat
//
LOCUS       DASQSJ010000125         3583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_15609, whole genome shotgun sequence.
ACCESSION   DASQSJ010000125 DASQSJ010000000
VERSION     DASQSJ010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15609"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            514..1176
                     /locus_tag="VE223_02575"
     CDS             514..1176
                     /locus_tag="VE223_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20506.1"
                     /translation="MSVISIILLFFLHLFTITIQISPDSIPARIIQIFTIILISLSSL
                     SVIWRGLVPVVICGLGITLIYGGIVIPSYTLTLPTEGYFKGIRILIDQQIISMATEGY
                     FFLGIAMVVLSMIIAYKPTLLYVKNRPKPSHSLWTDYQKWYDNVQLAGGYTEPNVPLK
                     TLMSEQEKYLLWRYEYILTSIYGTPYLVKPDGFVPKRSTILRDKESGRMIGVARYSGY
                     FM"
     gene            1597..2286
                     /locus_tag="VE223_02580"
     CDS             1597..2286
                     /locus_tag="VE223_02580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HZC20507.1"
                     /translation="MADTKFTIVRLNLDNNKFEILVKPDPALEYKLGKRTDLSSILIS
                     DEIYSDANKGSRAASEKLVKYFKTTDSTEVAKQILSRGELSLTTDQRRKMVEEKKKQI
                     VQYINKNFVDPKTHIPHPPLRIESAMNEARVVIDPFKRHEDQAKAIIDSLRKSLPLKS
                     ETLRLIITVPPQFSAQSYNILKTTGNFSGEQWLADGSIRVTLEINAGMKGAFLDRIGS
                     ASKGSAHVIEG"
     gene            2557..3348
                     /gene="rrp4"
                     /locus_tag="VE223_02585"
     CDS             2557..3348
                     /gene="rrp4"
                     /locus_tag="VE223_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HZC20508.1"
                     /translation="MQEIKRKYVVPGDKVIEGNFRPLMNVIKAGNSIIATRIGIAETG
                     RDGVKVIPLSGVYIPRVNDIVIGKIIDHSSLSWEVDVNSCFSAHLPAQDVFGRDFSPA
                     RDDMGRQLAIGDLIAARIIAFDRTRDPMLTIQDKDLGKIPRGELLKISATRVPRLIGK
                     RGSMIQTIEQATQTRILIGQNGIVVVMGRNLDGIKLSTRAIKMVEEEAHTANLTQRVK
                     ALLNVPDYPQAEGSSVTQTQNNQKAEEIQSTIEEAEEEKIEGGKA"
     gene            3345..>3583
                     /locus_tag="VE223_02590"
     CDS             3345..>3583
                     /locus_tag="VE223_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="involved in the 3' to 5' degradation of a variety
                     of RNA species; forms a trimer of heterodimers (hexamer)
                     with Rrp42; Rrp41 is the catalytically active subunit;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HZC20509.1"
                     /translation="MMNQTNLIDENGRRTDGRNPDELRQVKITVGVVKNADGSAFIEF
                     GRNKIIAAVYGPREVHPKHMALPDRCILRCRYHMSP"
BASE COUNT         1258 a          618 c          665 g         1042 t
ORIGIN      
        1 ttatgcttct agaaagcttt gacggaatct atcaaaagtt tcctataaag ccatcatatt
       61 agaagatgtt atataccgct acttttacag taattagatt ttcataaaaa ttacggctga
      121 aatgtagtta tttgtcgtac catacaaaga atatgaatta gtcattacta ttgattacac
      181 actgttaggt atctataaaa gagtaaataa ttgtggcatt tacagaacac atttcagaaa
      241 acagaaataa aatagttcat gccactaatt tatgctatag cgaatgtaaa ccaaccattc
      301 cttttttgcc aatccgatta taataatcac aatagtttta gtatacttaa tcacatttaa
      361 gaaaacttaa tgcctacgac actgtaatgt tatcatacat atttgacacc aggatttcct
      421 tcagtaaata acgatgataa ttactataaa aaatatagtt ggtacatgct catctaccaa
      481 tggtttcata aaaatagatc gatactcata gcattgagcg ttatcagtat catacttctg
      541 ttttttctcc atctttttac catcacaatt caaatctcgc cggattcaat tcctgcgagg
      601 atcatccaga ttttcactat tatactaatt tcattatcat ccctttcagt aatctggagg
      661 ggcctggtac ctgtcgtcat atgtggtcta ggtattactt tgatatatgg tggaattgtt
      721 atcccatcct acacacttac tctacctact gaaggttact tcaaaggaat aagaatatta
      781 attgatcaac agattatatc gatggctacg gaaggttact tttttctcgg aattgcaatg
      841 gttgtcctaa gtatgataat tgcatacaaa cccactctac tttatgtcaa aaacaggcct
      901 aaaccttcgc attccttatg gacagactat caaaaatggt acgacaatgt gcagcttgcc
      961 ggcggttata ctgaaccgaa tgtacctctt aagaccctaa tgagtgaaca agaaaaatac
     1021 cttttatggc gctatgaata tattttgact agtatctatg gcactcctta tcttgtcaag
     1081 ccagatggct ttgtcccaaa gaggtccacc attttaaggg ataaggaaag cggtagaatg
     1141 attggtgtag caagatatag cggatacttt atgtgaaatt atagaacgag actaagagaa
     1201 gacattaaat ttagtcctta ttgctttttt caaaagtaac atttaattga catggatgga
     1261 catgaacgat attctcatat ttagtaagta gtacaatatc aaacatataa tttctaaata
     1321 tttctgtcta gctgccgcca aatcaaggac tgagcaccaa aactacgaac gcaacaataa
     1381 agattagcca aatataaata ttctaaaaca gactaaatct tcagatgact ccgctggatg
     1441 atgaagtttg gagatgtttt agatgtgatt tatatttcga atcgcgcgaa actgctagcc
     1501 ttcatgaatc attaactcat cataaattaa gaaaagttgt gagatttaag cactgacatg
     1561 catatatagt gtttatgatg attattctat agactaatgg cggataccaa atttaccatt
     1621 gttcgtctaa acctagataa taataagttt gaaattctag tgaaacccga tcctgcctta
     1681 gaatacaaac taggtaaaag aactgattta tcaagcatac taatttctga tgaaatttat
     1741 tctgatgcta ataaaggttc aagagcagct agtgaaaaat tagtaaaata tttcaagacg
     1801 acagattcga cagaagttgc caaacagatc ctttctcgag gcgaacttag tttgactact
     1861 gatcaacgtc gaaaaatggt cgaggaaaag aagaaacaaa tcgttcaata tattaataaa
     1921 aattttgtag atcccaaaac gcatatccca catccacctt tgcgaattga aagcgcaatg
     1981 aacgaagcaa gagttgttat tgaccctttc aaaagacatg aagatcaggc caaggccata
     2041 atagattcgc ttagaaagag tttacctcta aaatcagaga ccttgagatt gatcataact
     2101 gttccgccac aattctctgc acaatcctat aatatcttga aaactactgg taattttagc
     2161 ggtgaacaat ggcttgcaga cggttctatc agagtcacat tagaaataaa tgcaggaatg
     2221 aaaggcgcct tccttgatag gataggatcc gcatcaaagg gttcggcaca tgtaatagaa
     2281 ggataaagat gtcttttggc tatgtgaaat cgtatagcaa cgctattact aatggagatt
     2341 gcaaaagaat tctgactttg attatgaatc caatatcgac agatactaaa agtcttacca
     2401 attgacaata atacacagca tactctatat ctccatacga cttcttttta acacttaaaa
     2461 tataagactg atcttactga ccaaacagta gagaaagtat ggaaagaatt attttgtata
     2521 acaaggcttt tgatctagag gtgcctagtt aatagtatgc aagaaattaa aagaaagtat
     2581 gtagtccctg gtgataaggt tatcgagggg aattttagac ctctaatgaa tgtaattaaa
     2641 gcaggcaatt ctattattgc cacaagaatt ggaattgcag agactgggag agatggtgtc
     2701 aaagttatac cactgtcagg tgtttacatt cctagagtaa acgatattgt aataggcaag
     2761 attatcgatc attcttcact gtcttgggaa gtagatgtta actcttgctt ctctgcccat
     2821 ttgccagcac aggatgtatt tggaagagat ttttctccag ctagagatga catgggtaga
     2881 caattggcaa taggagattt aattgctgca agaattattg cgtttgatag aacaagggat
     2941 ccgatgctaa caatccagga caaagattta gggaagatac ctcgcgggga attgttaaaa
     3001 atttctgcaa ctcgggttcc aagacttatt ggaaagcgcg gttccatgat acaaacaatc
     3061 gagcaggcaa cacaaacaag aattttaatt ggtcaaaatg gaatcgttgt tgttatggga
     3121 agaaatttag atggaataaa actatccaca agagcaatta agatggttga agaagaagct
     3181 catacagcga atctaacaca aagggtcaaa gctttattga atgtaccaga ttatccacag
     3241 gcagaaggca gctccgttac ccaaactcag aataaccaaa aggccgaaga aattcaatcg
     3301 accatagaag aagcggaaga agaaaaaata gaaggcggaa aagcatgatg aaccagacga
     3361 acctaattga tgaaaatgga agacgaaccg atggtcgcaa tccagatgaa ctgagacaag
     3421 tcaagataac tgtaggggtg gtaaaaaatg ctgatggttc tgcgtttata gaatttggca
     3481 ggaataaaat tattgcagct gtctatggcc ctagggaagt acatccaaaa cacatggcac
     3541 ttccggatcg atgtatctta agatgcagat atcatatgtc tcc
//
LOCUS       DASQSJ010000126         2267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_334177, whole genome shotgun sequence.
ACCESSION   DASQSJ010000126 DASQSJ010000000
VERSION     DASQSJ010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334177"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VE223_02595"
     CDS             <1..209
                     /locus_tag="VE223_02595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20510.1"
                     /translation="ILDITSHLTLKKHIQSSALSMYILILSNSSMNDFIIKIVEINVG
                     MQNTPKCFNLDQNQLIKTRIYECI"
     gene            273..1010
                     /locus_tag="VE223_02600"
     CDS             273..1010
                     /locus_tag="VE223_02600"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HZC20511.1"
                     /translation="MDVQSTHIEPHIKESSYIRDLVFGFGDGVNTSLGIVSGVGGAAV
                     AADIVILAALIGMFTGAKAMAVQNYLAVKSQREILEAEIKREQYEIENLPERERQEIQ
                     DIYWAKGFRGDELNKIVNKITSDKDVWLKTMLTEELGLNLEILGNPLKGAFAMFGAFL
                     LGGILPILPYFVVKTGFISSGIAIGIAIGLSLVSSFIVGAIKARLAKKNWVKGGIEMA
                     GLGTGIALVGYGIGSELARAGIVNVAR"
     gene            1250..1576
                     /locus_tag="VE223_02605"
     CDS             1250..1576
                     /locus_tag="VE223_02605"
                     /inference="COORDINATES: protein motif:HMM:NF002258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31e"
                     /protein_id="HZC20512.1"
                     /translation="MSNTEENLTRVYTINLGKAWITPKYKRADRVINIIKDFAKRHMK
                     SEEIKIDQDLNRQIWSRGKSNPPRKIRVRMIKDEDETTIVSLFEVAKEPEQDIETPES
                     TNTENT"
     gene            complement(1662..2207)
                     /locus_tag="VE223_02610"
     CDS             complement(1662..2207)
                     /locus_tag="VE223_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20513.1"
                     /translation="MTTINIPKIMNVLVAEDEYDIALLYKMALEKRNHKVTITENGED
                     CLKIYHEESQRTRFDLTNKQMGAFDAIILDYKMPRIDGMEVAKEILSVNPHQRIIFAS
                     AYVKETLLDSIKNLNQIVELMQKPFAVKTLLDTIEDKETYSQLLELNVDVDLIKAINP
                     THEQITDLLQRLRKVQKGRTF"
BASE COUNT          783 a          384 c          460 g          640 t
ORIGIN      
        1 taatattaga tattacatca catctaactc taaaaaagca catacagagc agtgctttga
       61 gcatgtatat attgattctc tcaaattcat ctatgaatga ttttataata aaaatcgtcg
      121 aaattaacgt agggatgcag aatactccga aatgctttaa tttagatcaa aaccaattaa
      181 ttaaaaccag aatttatgaa tgcatataag attaagatgg tttgtatatc tgctcaagct
      241 ataaattata gaatgaaaag aaaatagtcg gattggacgt acagtcaaca catattgaac
      301 ctcacatcaa agaaagcagc tatattagag atttagtatt tggatttggt gacggagtta
      361 atacatcctt gggaattgta tcaggcgtcg gaggtgctgc agttgccgct gacattgtta
      421 ttcttgcggc attaattgga atgtttacag gcgctaaagc tatggcagtt caaaactatc
      481 ttgcagtaaa atcccagaga gaaatattag aagccgaaat taaaagggag caatatgaga
      541 ttgagaatct tccagaaaga gaaaggcagg aaatacaaga catatactgg gccaaaggat
      601 ttcggggaga tgagttgaat aaaatagtca acaaaataac ctctgataaa gatgtctggc
      661 tcaagacaat gctaactgag gaattggggc tcaatttaga aattctagga aatccactga
      721 aaggagcttt cgcaatgttc ggagcgtttc tacttggtgg tattcttcca attctacctt
      781 actttgtagt aaaaactgga tttatatctt caggtatagc gattggaata gcaataggat
      841 taagtctggt gtcttcattt atcgtaggcg cgataaaggc gagacttgca aagaagaatt
      901 gggttaaagg tggaatcgaa atggctggtc tcggcaccgg tattgcactc gtaggttatg
      961 gtataggttc agagctagca agagctggaa tagtaaatgt tgcaagataa agcaatatag
     1021 agcagaccaa cacttaaaaa taggatcgac tcaattacct aaaacatggc tgctcgcaaa
     1081 aacacttcac gcaaaaaaag actaataaaa cacatgaagc aaaataggcc cgtcccggcg
     1141 tggattataa ttcgaactca tagaaaggta aggacgaatc cgaaaagaag attatggcga
     1201 agaactgatg taaaggttgg ctaagatcgc ttttggttgg tgaaacaaaa tgtctaatac
     1261 tgaggagaat ctaactcgtg tttatacaat caatctgggc aaagcatgga taactccaaa
     1321 atacaagagg gcagaccgcg tgatcaacat aatcaaagac tttgctaaaa ggcatatgaa
     1381 aagtgaagaa ataaaaattg accaggatct aaacagacaa atttggagtc gaggcaagag
     1441 caatcctccg cgaaaaattc gcgtaagaat gataaaggat gaagacgaga cgaccattgt
     1501 gtcattgttt gaagtagcaa aggaaccaga gcaggatatt gagactcctg aatcgaccaa
     1561 tacagaaaat acataataga accagatata ggtatgcaaa cccgtcgtga tacccgagtc
     1621 acgattttat agagaaaacg aaaataaatg cgaatgctat attagaaggt tctgcccttt
     1681 tgaacttttc gcaacctttg taacaaatct gtaatctgtt cgtgtgtagg atttattgcc
     1741 ttgatcaaat caacgtctac attaagttcc agtagttgag aatatgtttc cttatcttct
     1801 atagtatcca acaacgtttt taccgcaaac ggcttttgca taagttcgac aatttgattt
     1861 aaatttttta ttgaatccaa gagggtttcc ttgacatatg cagatgcaaa aattatcctt
     1921 tggtgtggat tcaccgatag gatttccttc gcgacttcca ttccatcaat ccttggcatt
     1981 ttataatcaa gaatgattgc gtcaaaggcc cccatttgct tgttggtgag atcaaatctt
     2041 gtacgttgag actcttcgtg ataaattttt aaacagtctt cgccattttc agtaatagta
     2101 accttgtgat ttctcttttc caacgccatc ttgtacaaca gggcaatatc atattcatct
     2161 tctgcgacca gaacattcat aattttaggg atattaattg tagtcaatgg ctctccatca
     2221 acctatcaca atttgcattt tttagcatag cacaagtgag tgagtaa
//
LOCUS       DASQSJ010000127         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_134270, whole genome shotgun sequence.
ACCESSION   DASQSJ010000127 DASQSJ010000000
VERSION     DASQSJ010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134270"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="VE223_02615"
     CDS             complement(<1..866)
                     /locus_tag="VE223_02615"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20514.1"
                     /translation="MTIASIINHFGLRDNCTLRVILSMAGKDIRSSLTERAFMVTSII
                     IPINFLLLFLLFALTGGEAPTAIVLEDHGPYAIQFISAMEHSHSFIIQQTTPSEAQNL
                     MREGRIVSIITIPANFDSSLQKGFDVQLPVVINNLDVDFTNDIRRAVPLAITSFYANV
                     FPNQVVIRAHEIDTYSHDTSYIQYLVVSLMVVSIMLGGLLQAGANAAREYENGTIKEL
                     ILSPARPWAIQLGKLLGALVLNSFSVSVVIIVIVFLIGVRPIHWDELLGFTLLLMITF
                     VALGSLIGMLMRR"
     gene            complement(908..1903)
                     /locus_tag="VE223_02620"
     CDS             complement(908..1903)
                     /locus_tag="VE223_02620"
                     /inference="COORDINATES: protein motif:HMM:TIGR01188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HZC20515.1"
                     /translation="MKDTELEKSGSYNIHDNSSNDIAIEISNLTKHFENVKAIDNLSL
                     TVRYGEIFGLLGPNGSGKTTTVNIVSGLSKPTSGQVKVLGYDITRNTHAIHAVLGAVP
                     QETALYEELTAWMNMTIHADLYGIRWSKREQRITDMLNLVQLYERRHNRVSTFSGGMK
                     RRLALARSLLHDPKLLYLDEPTLGVDVQSRRALWDYILDLKKKGKTILLTTNYLEEAN
                     ALCDRLAILDHGILVALDTPSNLKRRYGDIIIEIEMTSPISKHIITQIHALSGVTEVH
                     QNDRAIKITSTGNDTSIIGQIVMLVTRETSLRTISQREPNLDEIFLNLTGSALRD"
     gene            complement(2321..>3034)
                     /locus_tag="VE223_02625"
     CDS             complement(2321..>3034)
                     /locus_tag="VE223_02625"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HZC20516.1"
                     /translation="IKEVVFDTQTLVSQTQNRMWRALNGSYKYDSSLKDSQAFLLNHV
                     NSKVSLVIMYADLVGSTSMSMTLPVDKMVTIIRAFTYEMTCIVRNYDGYVLKYVGDAL
                     IAFFPSGYNKLLACDKAVQCAKSMIAVIKNGINPILNRYDYPELCVKIGIDEGENVVV
                     QYGHDKSSLIDILGYSMSITAKLTSLTSPDKITIGKDVYDVLHPEIKINFVELKYDVG
                     SWKYTDRETGDLYKLYTLR"
BASE COUNT          955 a          592 c          521 g          966 t
ORIGIN      
        1 cgacgcataa gcatgccaat aagtgatcct aatgccacaa atgttatcat aagtaaaagc
       61 gtaaatccaa gtaattcatc ccaatgtatt ggacgaacgc caatcaaaaa tacaattacg
      121 attattacaa ctgaaacaga aaatgaatta agtacaagtg cgcctaaaag cttgccaagt
      181 tgaattgccc atggtctggc aggcgacaag attagctctt taattgtccc attttcatac
      241 tctctggctg cattagctcc agcttggagc agtccaccaa gcataatact tacgaccatc
      301 aagcttacaa caagatattg aatatagctc gtatcatgag aataagtatc tatttcatga
      361 gcccttatta ctacttgatt cgggaaaaca tttgcataaa atgaggttat tgctaatggt
      421 accgccctac gaatatcatt tgtaaagtcc acatcaaggt tattgataac aacgggcagc
      481 tgtacgtcaa atcccttctg taatgagcta tcaaagttgg caggaatggt aatgattgat
      541 acaatcctac cctcccgcat aagattctga gcctcgctag gagtagtttg ttgtattata
      601 aatgaatggg aatgttccat tgctgatatg aattgtatag cataaggacc atgatcttca
      661 agaacaattg ctgttggtgc ttcaccacca gtaagagcaa atagcagaaa aagtagcaag
      721 aaattgatag gaatgataat actcgttacc ataaaggccc gttcggttaa ggagcttcga
      781 atatcctttc ctgccattga caaaattacc cggagagtac agttatctct aagtccaaaa
      841 tgattgataa tagaagcgat agtcatagtt ttcttcttgc tttcttttct ttctttccct
      901 ctacctatta atcccttaat gcacttccag ttaaattcaa aaagatttca tccaaatttg
      961 gttctcgttg cgaaatagtt ctgagtgagg tctctctggt aacaagcata acgatttgtc
     1021 ctattataga tgtgtcattt cctgtcgatg ttattttaat ggccctatcg ttttggtgca
     1081 cttcagttac tccagaaaga gcatgtattt gtgttatgat atgcttagat atgggtgatg
     1141 tcatttctat ttctataatg atgtcaccat atcttcgctt aaggttggat ggtgtatcta
     1201 gggctaccag tatgccatga tctagaatgg ctaaacggtc gcatagcgca ttagcttcct
     1261 ctaaatagtt tgtagtcaag agaatcgttt tgcctttctt ttttaaatcc aagatgtaat
     1321 cccatagtgc tcgcctgctt tgtacatcaa ctcctaatgt tggctcgtct aaataaagca
     1381 gcttgggatc atgcaacaga gatctagcca atgctaaacg gcgcttcata cctccagaaa
     1441 aagtgctaac acgattatga cgtcgttcat aaagttgaac tagattgagc atgtcagtaa
     1501 tacgctgttc tcgcttagac cagcgtatac cataaagatc agcgtgaatt gtcatattca
     1561 tccaagctgt aagctcctcg taaagtgctg tctcttgtgg tacagctccc agaactgcat
     1621 gaattgcatg cgtatttcgt gtaatatcgt atccaagtac ttttacctgt cccgatgtag
     1681 gtttagatag accgctaaca atattgacag tggtagtttt cccagatcca ttaggtccaa
     1741 gtaggccaaa tatctcaccg tatctaacag tcaaagacaa attgtctatg gctttgacat
     1801 tttcaaaatg ctttgttaga ttgctaatct ctatagctat atcgttgcta ctattgtcat
     1861 gtatattata gctacctgat ttctctaact ctgtgtcctt cataaatcat caactcattg
     1921 caccatgtat ctactgcata tatgattgag tagttcatta ccattatcat gtcatcatgt
     1981 catcataatt gacattagta cattactctt atgatcaagc tgaacatgta ttacactaaa
     2041 agagagaatg tattaaggtt gctttgcaaa tctagggttg tactaccaat taatgaagta
     2101 taagaaatgc ataatgctga cttacacatg ggcatgcata gttgaaatca aaaacatgaa
     2161 cgtgcaacaa atgctgagca tgagaattga aagcctaatc aatttggcaa gtagaatatt
     2221 gaaaatttga gcacaaaagt tgaaggatca caagtagact aggggagaag caaattaaca
     2281 cagcttaaca gtcatggccg taattataat acgcaagtta ttatctcagt gtataaagtt
     2341 tgtaaagatc tcctgtctct ctatcagtat atttccagct tccaacgtcg tacttaagtt
     2401 ctacgaaatt aatctttatt tccggatgca atacatcgta aacatcttta cctatcgtga
     2461 ttttatctgg actcgttagt gaagtcagct tcgcagttat actcatacta tatccaagaa
     2521 tatcaatgag agagctttta tcgtgtccat attggactac tacattttcg ccctcatcga
     2581 tacctatctt aacacaaagc tctggataat catatcgatt taatatagga ttaattccat
     2641 ttttaattac agctatcatt gattttgcac attgaactgc tttatcacat gctaataatt
     2701 tgttgtaacc agatggaaaa aaagcaatta aagcatcacc tacatatttt agcacataac
     2761 cgtcatagtt acgcacaata caagtcattt catatgtaaa tgctctaatt atagtaacca
     2821 tcttatcaac aggcaaagtc atgctcatac tagttgagcc gactaaatct gcatacataa
     2881 tcacaagtga aacctttgaa tttacatgat tgaggagaaa agcctgacta tccttcaaag
     2941 atgaatcata cttataacta ccatttaatg ctctccacat tctattttga gtttgagaaa
     3001 ctaatgtttg tgtatcaaaa actacttctt ttat
//
LOCUS       DASQSJ010000128         2047 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_365778, whole genome shotgun sequence.
ACCESSION   DASQSJ010000128 DASQSJ010000000
VERSION     DASQSJ010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365778"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..471
                     /locus_tag="VE223_02630"
     CDS             <1..471
                     /locus_tag="VE223_02630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HZC20517.1"
                     /translation="IITNMFGGVGTYSILIAKKNLTCKVYNIDSNPSANELALFNAKL
                     NKVQDRVLPICGDAREVINDQLKGLSTRVLMPLPEKAKEFVDSAVLTLKGNKGIIHYF
                     AHIKAHTKKLALEIGSDDTKQAFVKYEHKIIATRVVREVGPRIYQVVSDVCLTG"
     gene            complement(483..692)
                     /locus_tag="VE223_02635"
     CDS             complement(483..692)
                     /locus_tag="VE223_02635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20518.1"
                     /translation="MGKRRGRGAGLCILIFSIIAFIVYAYFLLGTDWGIVILRLTVLG
                     AVTALLAVLAWIGYTMATAPELEGQ"
     gene            complement(732..1229)
                     /gene="rimI"
                     /locus_tag="VE223_02640"
     CDS             complement(732..1229)
                     /gene="rimI"
                     /locus_tag="VE223_02640"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020265495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HZC20519.1"
                     /translation="MQTTLRRVGDYIIRRCEERDLTSVISINMNTLPEHYSDYFFECI
                     LRELPEAFVVAEVNDNIIGYIMCKIEFGFSNFRKLGFVKKGHVVSVAVLDQHRGKGIG
                     RALMLEGVNGVVSRKSDEIYLEVRISNEPAIKMYEKLGFQIKSRLRTYYRDGEDAYLM
                     ALEFI"
     gene            complement(1378..>2047)
                     /locus_tag="VE223_02645"
     CDS             complement(1378..>2047)
                     /locus_tag="VE223_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20520.1"
                     /translation="HEGMSEAFNARQDNLPKPGVKGPPLKIALSNSENISAKSIELIA
                     NSFGIAGICYGSISDASQSAITHLDSISTIEMESAKSAIIGTGSEIGIHSTLSDSLNS
                     LWNTIHIVRENGSAILLSENRRGLGEGALQMYVEGRLKIEEQLKTRYINGLEHLLYLQ
                     ELRQKCELGIVSTLPQYYLRKLGLDGYISLKSVLEKLLTKHGKHHKVLILSDADITFL
                     KKKF"
BASE COUNT          668 a          425 c          335 g          619 t
ORIGIN      
        1 attattacaa atatgtttgg aggagtagga acatactcta ttctaatagc caaaaagaat
       61 ttgacgtgca aggtttacaa tatagattct aacccctcag cgaatgaatt agctcttttc
      121 aatgcaaaat taaacaaggt acaagacagg gtcttgccca tttgtggaga cgcgagagaa
      181 gtcattaatg atcaacttaa aggtctgtcc actcgagtgt tgatgccatt acctgagaag
      241 gcaaaggaat ttgtagattc ggcagtattg acattaaaag gaaacaaagg tatcattcac
      301 tacttcgccc atataaaggc tcacacaaag aaactcgctt tagagatagg ctcagatgat
      361 accaaacaag cgtttgttaa atatgagcat aaaattattg cgacaagagt agttagagag
      421 gtagggccac gaatatacca agtagtatct gatgtttgtc ttactggatg aaatatacaa
      481 ggtcattgtc cttctagttc cggagcagta gccattgtgt agcctatcca ggctaatact
      541 gccaacaggg cagtaactgc tccgagtacc gtaagtctaa gaatcactat tccccaatcc
      601 gtaccgagca gaaaataagc atatacaata aatgctataa tcgaaaaaat caaaatgcaa
      661 agtcctgcac ctcttccacg tctttttccc atatcttact gtttgacatc cacggcacct
      721 tatttatata tctagataaa ttctaaagcc ataagatagg catcctctcc atctctataa
      781 tatgtgcgca gtctagattt tatttgaaaa cccaattttt catacatttt gatggctggt
      841 tcattgctaa ttcgaacctc aagataaatt tcatcactct ttctgctaac tacaccatta
      901 acgccttcaa gcattaaagc cctaccaatg cctttgccac gatgctgatc taaaacagct
      961 acagaaacta catgtccctt cttcacaaat cctaatttcc taaagtttga gaaaccaaat
     1021 tcaatcttgc acattatata acctatgatg ttgtcattaa cttccgcaac aacaaatgcc
     1081 tcaggtagct cacgtaggat acactcgaag aagtagtctg aataatgttc aggaagggta
     1141 ttcatattaa tactgataac agaggtaaga tccctctctt cacatctacg aatgatataa
     1201 tcgcctactc tccgtagagt cgtttgcaaa ctgttcgaat atgacaaaac aaattattta
     1261 accttatcag attaatgaaa ctgtgcacca tcagacaata aatataatga acaaatttca
     1321 aattataaaa attgccagat ttcgtattct gaaaaataac tacaaacacc ataatggcta
     1381 aaacttcttt tttagaaagg taatgtcagc atcagacagt ataagaactt tatggtgttt
     1441 tccatgctta gtaagcaatt tctctaacac gctttttaag cttatatacc catcaagccc
     1501 tagctttctc aaataatatt gtggtagtgt agacactatt cctaattcac atttctgccg
     1561 caattcttga agatatagca gatgttcaag accattgata tatctggttt ttaattgttc
     1621 ttcaatcttt aatcgtcctt caacatacat ttgtaatgcc ccttctccaa gtcctcttcg
     1681 attttcagaa agcaatatag ctgacccatt ttctctaaca atatggattg tattccacag
     1741 tgaatttaat gaatccgaaa gtgttgaatg tatgccgatt tcactaccgg tgccgataat
     1801 tgcagattta gctgactcca tttcaattgt ggagatagaa tccaaatgcg taattgcact
     1861 ctgcgatgca tcgctaatac tcccgtagca aattccagca atgccaaaag aatttgctat
     1921 caactcaata gatttagcag agatattttc cgaattggag agagcaatct ttaatggtgg
     1981 gcctttgact cccggcttag gcaaattgtc ttgtcttgca ttgaaagctt ctgacatacc
     2041 ctcatgc
//
LOCUS       DASQSJ010000129         4167 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_365862, whole genome shotgun sequence.
ACCESSION   DASQSJ010000129 DASQSJ010000000
VERSION     DASQSJ010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4167)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4167)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4167
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365862"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            399..1334
                     /locus_tag="VE223_02650"
     CDS             399..1334
                     /locus_tag="VE223_02650"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HZC20521.1"
                     /translation="MVNVKFSCLIVLSAAAVIGGIMLLGSVITSVYAQNVVKRWSVDD
                     PGGIVIDPKGNVYVAETGKDRILEFTSNGTLIRAWGSAGSGNGQFNSPMGITLDYARG
                     YVYVTDTGNNRVQKFTSNGTFITKWGSPGSGPGQFQTPIGIDEDESKQNVYVTDIGNN
                     RVERFTSSGKFISQWGSLGSGESQFANPGRIAVDNSGNLFVADFGNNRIQKFDANGKF
                     IMQWGSLGHANGQFYNPTGMTVQLSHGNVYVADTGNSRIQEFTNEGKFVNKWPINTAT
                     GAIDNIDLDVNSNGTIYVTDRAGDSVQVIFTTAGS"
     gene            1636..1806
                     /locus_tag="VE223_02655"
     CDS             1636..1806
                     /locus_tag="VE223_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20522.1"
                     /translation="MSGEVQIKFPAQFSHSVKIEQSAKGARVTVHILANSQQEAIDQA
                     IRMYSSVRETGR"
     gene            1998..3707
                     /locus_tag="VE223_02660"
     CDS             1998..3707
                     /locus_tag="VE223_02660"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF006187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HZC20523.1"
                     /translation="MKATDLFIKCLESEGVEYIFGLPGEENADLMVSLADSKNTIKFI
                     LVRHEQAAAFLADMYGRLTQKVGVCLSTLGPGATNLTTGVANANMDRSPILTITGQTD
                     TDSLHKESHQNMDVVTMFKPITKWNWSIRNADSIPEIIRRAFKIALEEKVGAVQIELP
                     QDIAKMDSKIKPIVKQKVLRSRPNRELIQRAAKIILHAKTPLLLVGNGCIRGNASYCL
                     RKFVEKTGIYSMNTFMAKGVLSDKSQRHLQTIGIKEADHALLAMEEADLIIAVGYDLV
                     EYNPKNWNSNLDKKIIHIDFAPAEVDTYYPPTIEIAADIDYTIQPITEEIEKHKHKHH
                     NNNIVNDNNSIYNIPEQFKRIKKELVWRNTEKFKHNFSYPMMPEKLVFDVRNALDEND
                     IVISDVGAHKLWIAKLYETYVPNTCIIPNGFCSMGFALPAAIAAQLVKPNQKIVAMCG
                     DGAFLMNAQELETAVRLQLPIIIIIWCDSDFGLISLKQIEEFGRSAFTKFNNPDFVKL
                     AESFGAIGYNVESTEEFSQVLEKAKRSTNVPVIISTKVDYSRNRLLLNDNFTALHVGH
                     FAG"
BASE COUNT         1416 a          727 c          819 g         1205 t
ORIGIN      
        1 agtttggggg ttttattcac caacaatata aagttaaaaa agtaatatac attagctcac
       61 attccatctt ataaatggat tcatttctta tcgtatcagt gctattgtaa cgaaatctaa
      121 ctcaggcgct cttggtgcac accgtactca aggacccaac agcaaatctc attttggagg
      181 attcattaaa agataaaata tttatggaac agaagaaaca ttcgccatat ttctttattt
      241 cttcctcttt ccacccctta gctattcatt cttctgagag tcaacttatc tacatgatag
      301 cgatacagat gtcatataca acatttcttc agaaaaaatt agtataataa ttaattattt
      361 tccttaaatc tacccttatc tttctttttt taagaaaaat ggttaatgtt aaattttcat
      421 gtctaatagt actgtcagca gcagcggtaa taggaggaat tatgcttcta ggcagcgtga
      481 taacttctgt ctatgcacag aatgttgtta aaagatggag cgtagacgac ccagggggca
      541 tagtcataga tcctaagggc aatgtatatg tggcagagac aggcaaagac cggattctag
      601 agtttaccag taatggtacc ttgattagag catggggatc ggcaggctcg ggcaatggtc
      661 aatttaatag tccaatgggc attacgctag actatgctcg aggatatgta tacgtaactg
      721 atactggcaa taatcgtgtt cagaaattta ccagtaatgg tactttcatt acgaaatggg
      781 gatctcctgg ttcgggtcct ggtcaattcc agactccaat tggcattgat gaagacgagt
      841 ccaagcaaaa tgtgtatgta actgacattg gcaacaaccg tgtggaaagg ttcaccagta
      901 gtggcaaatt catctcccaa tggggatcgc ttgggtctgg tgaaagtcaa tttgccaatc
      961 ctggtcgcat agcagttgac aattccggaa acctgtttgt tgccgatttt ggcaacaacc
     1021 ggattcagaa atttgatgca aatggtaaat tcatcatgca atgggggtcg cttggccacg
     1081 ccaacggcca gttctataat cctacgggta tgacagtaca gctatctcat ggtaacgtgt
     1141 acgtagctga cactggaaat agtcgcattc aggagtttac taatgagggt aaattcgtaa
     1201 ataagtggcc tatcaacaca gctacaggag cgattgacaa tatagatctt gatgtaaatt
     1261 ctaatggtac gatatacgta actgatcgtg ccggtgatag cgttcaagtt atctttacta
     1321 cagcaggaag ttgacgcact cacgaccaca cattcaacat gctacgaatt caggtatatt
     1381 tagctaaatg tgtcagaatc tgatagcaca ttccacagaa tacttacgtt gtcagatcca
     1441 gagctagatg aaaaatacac actgggttga tgcacaagta ttgctttact aactcaaatg
     1501 cggaagtata tgagttagtg aagctttcct aaaacaaaat cggggtcatg ctttgagtac
     1561 cttaatagtc caggatcaag ttttcataaa aaagaccaag tctaaatata ccaattgcaa
     1621 tatgacacat aatctatgag tggagaagta cagataaaat ttccagctca gttttcgcac
     1681 agcgtaaaga ttgagcaatc tgcaaaaggc gctcgcgtga cagttcacat acttgccaat
     1741 agtcagcaag aggcaatcga tcaagcaata cggatgtatt cttctgtaag agagactgga
     1801 agatgaaggc cacatcctat caccgttcga agttaaagag tctactacgt cagcagcctc
     1861 tgaagcgcat tgatacatga gattctgttt ccatgatcga aatgattgaa aactttaaat
     1921 ttttccttcg atattttggg actggtcatc tgtcaagtat atagtgatga ccaattgaag
     1981 agactagcaa atcaaccatg aaagcaaccg atctttttat aaaatgcttg gagtcagaag
     2041 gagtagaata catttttggt ttacctggtg aagaaaatgc cgaccttatg gtttctctcg
     2101 ctgattcgaa gaacacaatt aaattcatcc tagtaaggca cgaacaggcg gccgcctttc
     2161 ttgcagatat gtatgggagg ttgacacaaa aagtgggggt atgtctctct actttggggc
     2221 caggagcgac aaatcttaca acaggtgtgg caaatgcaaa catggacaga tctccaatac
     2281 tcaccataac tggtcaaact gatactgatt ctttgcacaa agaatctcat cagaatatgg
     2341 atgttgtaac catgttcaaa cccataacaa aatggaattg gtcaatacgt aatgcagata
     2401 gcattccaga aattattaga agagcattca aaattgcatt ggaagaaaaa gttggagcag
     2461 tacagattga attaccacaa gacatagcaa agatggattc taagataaag ccaatagtca
     2521 aacagaaggt attaaggtct agaccaaaca gggaattgat acaaagagct gccaagataa
     2581 tattgcatgc gaaaacgcct ctattactcg tagggaatgg ttgtataaga gggaacgctt
     2641 cctactgttt aagaaaattt gtagaaaaaa caggaatata ttcaatgaac acattcatgg
     2701 cgaagggagt tttatccgat aagtcacaaa gacatttaca aacaatagga atcaaagagg
     2761 cagatcatgc tttgttagca atggaagaag ctgacctaat tatcgcagtg ggatatgatc
     2821 ttgttgaata caatcctaaa aactggaata gtaatttaga caaaaagata atccatatcg
     2881 actttgcacc tgcagaagtc gatacatatt atcctccaac tatcgagata gcggcagata
     2941 ttgactatac tatacaacct attacagaag aaatagaaaa acataaacat aaacatcata
     3001 ataacaacat tgttaatgat aacaatagta tttacaacat accagaacaa tttaaaagaa
     3061 ttaaaaagga acttgtctgg agaaatactg aaaaattcaa gcataatttc tcatacccga
     3121 tgatgcctga aaaactagtt tttgacgtaa gaaatgctct tgacgaaaac gatatagtta
     3181 tatcagatgt tggagcacac aaattatgga tagcaaaact atacgaaact tatgttccaa
     3241 atacatgtat aattcctaat ggcttttgtt ctatgggatt tgctcttcca gcagcaattg
     3301 cagctcagct tgtaaagcca aatcaaaaaa ttgttgcaat gtgtggtgat ggtgcgtttt
     3361 tgatgaatgc gcaggagcta gagactgctg ttcgtttaca attacctata ataatcatca
     3421 tatggtgcga ttctgacttt ggtctaatat ctctaaaaca aatagaagaa tttggtagaa
     3481 gtgcgtttac aaaattcaat aacccagatt ttgtaaagct tgcggaaagt tttggagcaa
     3541 taggttataa tgttgaatca acggaagagt tctctcaagt cttagagaaa gcaaaacgtt
     3601 ccacaaacgt tccagttata atttctacca aagttgacta ctcaagaaat aggctattgc
     3661 taaatgacaa ttttacagcc ttacacgttg gtcattttgc aggatgataa ggcatttcat
     3721 atagaaatgg caatttaatt aattaaatct taaaataaga catgcctagt acttgtgtcg
     3781 gatcatatca gagaatctgg tttgaaaatc ttgggatgta caaagtgatg tcataatctg
     3841 ttacaaatat tatgctttat ttagcaacta attattttaa attttgtccc aaagaaggtc
     3901 agcaggtctt tcctttgtcg taacaagtca tgtattcata ttagaaacaa agcgatagta
     3961 ataatataac caacaattat tgcgttgttg ctgatacctt atgtgaagtt actgccagat
     4021 atctcaggat tgtgttttct tgttcctgta tagataaaca tatatggtat aattataaat
     4081 tgcatacaag cattctggcc catgcacatt atagtggatt aataatatag aatgtaaagg
     4141 tattagttaa aaatacgatt tcggtat
//
LOCUS       DASQSJ010000130         2913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_17040, whole genome shotgun sequence.
ACCESSION   DASQSJ010000130 DASQSJ010000000
VERSION     DASQSJ010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2913
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17040"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            728..1792
                     /locus_tag="VE223_02665"
     CDS             728..1792
                     /locus_tag="VE223_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HZC20524.1"
                     /translation="MRKKIRVAITGVGNCASALIQGTSYYDKNRESVGLTSYNLSGLE
                     PGDIEYVAAFDVVNSKVGLDLSEAIFAQPNNTVKICDIEKMDVKVEKGEIFDGIGRHL
                     SHKVKVSDKPSVDVTKVLKDTQAEILLNYMPVGSKQATQFYAEKCIEAGVSFINAIPV
                     FITSESKWQQAFGNSGLACAGDDVMSQLGATVLHKTLVKLFVDRGVKIDETYQLNVGG
                     DMDFYNMLDEERLEDKRVSKTSAVAVMAPYQIPMRIGPSDFVEFLQNDKVCYISIRGK
                     YFGNIPVDLDVKLRVVDAYNSAGVMIDAIRGSKLAIDRGISGPLESISAYCFKHPPIQ
                     MSYSQAKANFLEFIEGKRER"
     gene            1875..>2913
                     /locus_tag="VE223_02670"
     CDS             1875..>2913
                     /locus_tag="VE223_02670"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZC20525.1"
                     /translation="MVHIKKLEIYGFKSFGFKNTVIIFEKGLIAVTGPNGSGKSNVLD
                     AIMFAIGENSPKALRIDKFQSLFHDSQNRSHRLIRVSLTFDNEDRGIPVDSNSVTVTR
                     EIEGQTGDSQFYLNGKKVSKSNIVELLEVVVAAPNKLNIVQQGMITRISELNSEERRR
                     IIEDIIGLSYFDEKKEEALKQLEESDRRLEVAIARMGEVRKRIDELEVERNDQIRYEH
                     IESELKRFKAVLLSNSIRTVRTKLEVQKKTLDSNVASSLNLSKQLEEMHLQIENLESE
                     KTSFIHKVDVQNKAKAQIGSKVTNIVYESERMKAMLKESQQRLFEIERQIPLIDIDKE
                     NVNHKLNNLHLK"
BASE COUNT          998 a          459 c          569 g          887 t
ORIGIN      
        1 aagattcttg ccaggacttc gtcaggaatt tccttattga tgaaatttga acgaatgtca
       61 cgccttaaaa aaatcgcttt atataagccc tccttttcgc aacttgaaaa tgctttcata
      121 gatatcataa tatatttgaa aggtgttgta ttagatttat tctattttct aactattagg
      181 tctaaagata attcaatatt tcacagatca tacaatccat gaaggatcca cacgagggct
      241 aactagatgc agagtatcct gattagcttc tttcctctga tcctactcat gagacgatcg
      301 gtatttattt acaatacttt ttatgactag tagtttcttc aaaaacctaa ctagactatg
      361 atagtttagt caaacattgc attccaggta tctattattc tgttcattaa tgaaaccttg
      421 atattaattg gtagaatcaa agatatcaca aggcatgttc tcttgatcaa gtggccgaag
      481 atactaatac aaaattctta tcttgcctgt acgtatcagc acatagcttt tagcattgga
      541 atcattattc ttaattttat gaatctgtgg tctttactta aagcttattt ttgcacgata
      601 gtcctgtatt atagtctaag tttactatct tactttccta aaaatcgcgg tcattcatca
      661 ataatgtata gggattcgtt aattctacat aaacatatta acctgccttt aatagaagtc
      721 atattatatg cgtaaaaaaa ttagggttgc cattactggt gttggaaatt gtgcatctgc
      781 ccttattcag ggtacttcat actatgataa aaatcgtgag tctgtaggtc ttacttcgta
      841 taatttatct ggccttgaac ctggtgacat tgaatacgtg gctgctttcg atgttgtaaa
      901 ttctaaggta gggttagatc tatcagaagc aattttcgca caacccaata acactgtcaa
      961 gatctgtgat attgaaaaga tggatgtcaa ggttgaaaag ggagagatct tcgatggtat
     1021 aggtagacat ctaagtcata aagttaaggt ttctgacaag ccaagtgttg atgtaactaa
     1081 ggttctaaaa gatacccaag cagagattct tcttaattat atgcctgtag gcagcaagca
     1141 ggcaacacaa ttttatgcag agaagtgtat agaagctgga gtttctttta tcaatgccat
     1201 cccagtgttt ataacatcag agtcaaaatg gcaacaagca tttgggaata gtggtcttgc
     1261 atgcgcaggt gacgatgtaa tgagtcaatt gggtgctaca gtactacata aaactttggt
     1321 taaactattt gttgacaggg gggtcaaaat agacgagacg tatcagctaa acgtaggcgg
     1381 agatatggat ttttacaata tgcttgatga agaacgacta gaagataaaa gagttagcaa
     1441 gaccagtgca gttgctgtaa tggccccata tcaaattcct atgcgtattg gaccgtcaga
     1501 ttttgtagaa tttctacaaa atgataaagt atgttatata tctataagag gtaaatattt
     1561 tggtaatatc cctgtggatc ttgacgtcaa attaagagta gtagatgcat ataacagtgc
     1621 tggtgtaatg atcgacgcaa taaggggctc aaagttagct atcgacagag gtatttctgg
     1681 gcctcttgag agtatttctg catattgttt caagcatcct cctatacaga tgtcatattc
     1741 tcaggcaaaa gcaaatttct tggaatttat agaaggtaag cgagaacgat aggctaaaaa
     1801 tttttgacca aaatgggaaa ggcctgcttg tacaacatat aactaacccc atatctttat
     1861 atcagcatta ctcgttggtt cacattaaaa agcttgaaat ttatggattc aagtcatttg
     1921 gctttaagaa cacggtaata attttcgaaa aaggactaat tgcagttacg ggtcctaatg
     1981 gctccggcaa aagtaatgtt cttgatgcca taatgttcgc cataggtgaa aacagtccta
     2041 aagctttacg tatagataag tttcaatcgt tattccatga tagccagaac agatcacaca
     2101 ggttaattcg tgtctcgttg acttttgata acgaagacag aggaatacct gtggattcta
     2161 attctgtaac agtaacaagg gaaattgagg gacagacagg cgatagccaa ttctatctaa
     2221 atggtaagaa ggtctcaaaa agtaatatag ttgaattact tgaagtggta gttgccgccc
     2281 caaataagtt aaatattgtt caacagggaa tgataactcg tatttccgaa ttaaattcgg
     2341 aggaacgtag aaggattata gaagatatta tcggcctctc atattttgat gaaaaaaagg
     2401 aagaagcttt aaagcagtta gaggaatcag accgtcgcct tgaagtagcc attgcaagaa
     2461 tgggggaagt tagaaagaga atagatgaat tagaagtaga aagaaacgat cagataagat
     2521 atgagcacat agagtctgaa ctaaagcgat tcaaagccgt attgctttca aatagtataa
     2581 ggacagtcag aacaaaacta gaagttcaga agaagacttt agattccaac gttgcatctt
     2641 ccttgaattt atctaaacaa ctcgaggaaa tgcatttaca aattgaaaac ctagaatctg
     2701 aaaagacgtc atttatccat aaagtggatg ttcaaaacaa agccaaagca caaattggaa
     2761 gtaaagtaac gaatatcgta tatgaatctg agagaatgaa agcaatgtta aaggagagtc
     2821 aacaacgtct atttgaaatc gaaaggcaaa ttcctttaat tgatatagat aaagaaaatg
     2881 ttaatcacaa attaaataat ttgcatttaa aag
//
LOCUS       DASQSJ010000131         6438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_246963, whole genome shotgun sequence.
ACCESSION   DASQSJ010000131 DASQSJ010000000
VERSION     DASQSJ010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6438
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246963"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(233..631)
                     /locus_tag="VE223_02675"
     CDS             complement(233..631)
                     /locus_tag="VE223_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20526.1"
                     /translation="MEEISTRQEISYNKNRPLESIFQNTSARILDFLILNRKFDYSAP
                     EMSKITQIPLRTIQRVLPHLVEKELIKETGKIGNTKMYMLNTNSELTELLRQYVITTI
                     NMNIDNARKQRQQHTSNNNLVEHNENLVAR"
     gene            760..1491
                     /locus_tag="VE223_02680"
     CDS             760..1491
                     /locus_tag="VE223_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20527.1"
                     /translation="MTSTGEWRKWLLQQLIGEGVHNVVLEEQLYQEAGRHYDTNLDLA
                     LRSLRDEGIILSLESGREKKVLVNFDKLYDAQQIINSESKEDNGNTLVQPYIPEPEGY
                     TFWFDNKDKRKFKKQNIYNIYIKKTDKMNFAAQLITKSIGTPKTIYMGSLNEFESYIS
                     KLWRAVDTIATESKDGTFILQDLQDKDRVACGNNRQRGKVALAIFGKLGYIQQVGAKG
                     NSTRFKLTAKKPFAMTLDEVFNYMY"
     gene            complement(2013..3821)
                     /locus_tag="VE223_02685"
     CDS             complement(2013..3821)
                     /locus_tag="VE223_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZC20528.1"
                     /translation="MQYQNTKSSLKFTDKTVVITGSGTGIGQAIAKKFALNGANIIIM
                     GRRKEPLEQTSEILNDVIREVGSSGKVRTFSGVDVSDEIGINKMFKDIKREFGKVHIV
                     VNNAGVSGPVKTFTNANFKEFRDCVAIHLTGTFWTSIQSLQTMEPGGEIITITTFFTE
                     ENRYEQRPYRFRTPYTAAQGAKNRLVEALAWELVEKGIRSIATNPGPVHSDRIYKTVY
                     PKAAVEFLRIGGYPELTSVEIEKIANKILPLLGEPDNIISDGIKQVATDIAKFKNNES
                     TFEVERLYKIVSGLLIKIQEIAEKIQNNTSKMIVDGAFLTQDEVAEMVFNLCDEKISK
                     LINGRVIPNDRVFYPVKPIIATSIEANEPIEVKGKVIVITSSSSTKKDLDRVRKIASA
                     LHSKGVKHIIILTDKQHASLQFKDFHNDFINLSNEEALNEIFNSVRTNFGGIDAVVHF
                     TGDYDYDLSFSSLERQQWDSLVDNFVNTPALITREAVKAMAPRGAEEPLKFKGSKGLV
                     IIVGPDAPIGKKITGAVRARSEVFRGALRPFTATVNQELRDVLGSDIRLYLILAGNVD
                     GVHPNNDRLEDFVLQLISGSASKRNGTILYVDEAAY"
     gene            4215..4862
                     /locus_tag="VE223_02690"
     CDS             4215..4862
                     /locus_tag="VE223_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20529.1"
                     /translation="MSIPEAKFKIDVREGIVELEGNENFVDKHLDKFEEIFKSAIKET
                     MAQGFECNTTDVSALPQRDIEKSFDTSRSEFTKMHNSTKHTTKQSIPLIPVDLKANEK
                     KIALREFYSDKRPVNHYEKTAVFVYYITKLNKQIEVKFGEILSCYEEVDEKKPSIADI
                     IKNSIRYKGWLEWGSDKFTTRLTISGENFVKFDLPKQKRSQLNEQQPTTLLLPHN"
     gene            complement(4871..5422)
                     /gene="endA"
                     /locus_tag="VE223_02695"
     CDS             complement(4871..5422)
                     /gene="endA"
                     /locus_tag="VE223_02695"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HZC20530.1"
                     /translation="MNPVIGKLVENRIVVWSIQESRTLFGNGYYGKPLGVPKPKGTQF
                     DTPLILDLIEGCYLVHTGKLKVYHIDGKKISFRGIKAICRREYVDFDTKYQVFQSLRD
                     KGYIVSPGIKFGCDFAVYEHGPGIDHAPYLVQVFRPMEQMTATGIVLAGRLATTVKKQ
                     FILAIPKVKEKKVDFVGFDWWRA"
     gene            complement(5422..6075)
                     /locus_tag="VE223_02700"
     CDS             complement(5422..6075)
                     /locus_tag="VE223_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HZC20531.1"
                     /translation="MYSGELEVQAKRKALAVLHDEINRILNSARDLSTLTASLIKADD
                     KDIQVCIERMTNAEEEVENLRRKITREVAEIGSLMVYREDVLRTAYIMDDIAGYISGI
                     AFRLANMKISSLKKGKFDEDLKQLIGMVVDAIFKLNEMARALSINPASTIDLAQEVQK
                     LERRVDAKYRAIIIKALNEISSTRDLLLLKDAIEGIEGMADKCQEASDSFIILALSM"
BASE COUNT         1998 a         1173 c         1084 g         2183 t
ORIGIN      
        1 atctgctggc gtatctgcta atctaatttg agtgtgtatt tctgccactc ttcaacaaac
       61 ctcctttaat atcccctaga tccaaggtca aaactacgat tgccagtttt cgcaaatatt
      121 gatatttatt tcacaagata tatttttaga taatattatc tatactgttc tagtcgatcc
      181 atgaatatta ttaattataa ttaccttcgt cgtttgctca gtatttctta tattacctag
      241 caacaaggtt ttcgttatgt tctaccaaat tattattgga cgtatgctgt tggcgttgct
      301 ttcttgcatt atctatattc atgtttattg tagttataac atattgtctt agtaactcag
      361 ttagctctga gtttgtgttt agcatgtaca ttttagtatt tcctattttg cctgtttcct
      421 ttatcagctc cttttcgact aaatgtggta gtaccctttg aattgtcctt aagggaattt
      481 gcgttatttt actcatctct ggtgcagaat aatcgaattt ccgatttaaa atgaggaaat
      541 ctagaatcct tgcagaagta ttctggaata tgctctctaa tggtctgttc ttgttatatg
      601 atatttcttg tcgagtggag atttcctcca tacgattata ttgataatat agatctatat
      661 aaacatgtca aaattgacgt ttttatcatc taattcttgt agaagaacgt cataagtggc
      721 gtatatttaa atactctgac agatagcata tcctttagcg tgacgtcaac tggtgaatgg
      781 cgcaagtggc tgttgcaaca acttatcggt gaaggtgttc acaatgttgt attagaagaa
      841 cagctatatc aggaagctgg tagacattat gatacaaatc ttgaccttgc tttgaggtct
      901 cttagagacg aaggtataat tttatcgttg gaatctggcc gtgaaaaaaa agttcttgtt
      961 aattttgaca aattatatga tgctcaacaa ataattaatt cagaatcaaa ggaggataac
     1021 ggaaatactt tggtgcagcc atatatccca gaacctgaag gatatacatt ctggtttgac
     1081 aataaagata aaagaaaatt caaaaagcaa aatatttaca atatatacat taaaaagaca
     1141 gataagatga attttgcagc tcaacttata accaaatcca tagggactcc taagactatc
     1201 tatatgggct cattgaatga atttgaatct tatatttcga aactttggcg tgctgttgat
     1261 actatagcaa ccgaaagtaa ggatggtact ttcatattgc aggatcttca agataaggat
     1321 cgagtggcat gcggaaataa tagacagcgt ggcaaggttg cacttgcaat atttggtaaa
     1381 ctaggatata tccaacaagt tggagccaag ggaaattcaa caagattcaa acttactgcc
     1441 aagaagcctt tcgcaatgac cttggatgag gttttcaatt atatgtattg acttgaaatc
     1501 cagttccact agcaactgaa tttcctgtgg cgacctattt ctgcaaataa gtcaagggaa
     1561 gataatcaaa atatattcgg tttgatatca ttcataaatc agagggaagg atatctaagg
     1621 ataaataaat ccatatttag cattgccata ggtcaagaaa ctagaagttg aatgattgtt
     1681 tgcttggatg tacctacttt ccgaattacc cccaagtata taattccaag caaaatcttc
     1741 accttcagaa cctatgtttc gtattatatt gcactgtggt tattgtgtat attcatggtt
     1801 ctgctcttac agttgcggtc tggctactcc atatccatta agggaaattc tggaaggtgc
     1861 taaatagaag tacaacaaag gtttgacaca atttcaaaag aaaatcgact aggataataa
     1921 tattcgacta cagaccgaag tcgttgtgac agctacccaa ttgtatctgt aattagtaga
     1981 atatgtcatg aacaagatat attctataga tctcagtatg ctgcctcatc tacatataat
     2041 attgttccat ttctttttga agctgaacct gatattaatt gtagaacaaa gtcttccaat
     2101 ctgtcattat ttggatggac accgtctaca tttcctgcaa ggataagata aagccgaata
     2161 tcagagccaa gaacatctct gagttcttgg ttgacagtag cagtgaatgg ccgtaatgct
     2221 cctctaaaaa cctctgatct tgctctaaca gcacctgtga tcttcttgcc aattggtgcg
     2281 tctggcccta ctattataac taatccttta gatcccttaa atttaagggg ttcttctgct
     2341 cctcttggag ccattgcctt taccgcttcc cgtgtaatca aagcaggcgt attaacgaaa
     2401 ttatccacta atgaatccca ctgctgtctt tcaagtgacg aaaaagatag atcataatca
     2461 taatcgcctg taaaatgtac tactgcatct atgccgccaa aattcgttct tactgagttg
     2521 aaaatttcgt ttaaagcttc ctcatttgag aggtttatga aatcattgtg aaagtctttg
     2581 aattgcaatg aggcatgttg cttatcagtt aatattatta tatgcttaac tccttttgaa
     2641 tgtaatgctg atgcaatttt ccgaacacga tcaaggtcct tttttgttga agaactactt
     2701 gttataacaa tgactttgcc ctttacttct attggttcat tagcttctat agatgttgct
     2761 ataatcggct tgactggata aaatacacga tcatttggaa taactctacc attgattagt
     2821 ttgctaatct tttcatcgca caaattaaaa accatctcag caacttcatc ctgtgtaagg
     2881 aatgctccat cgacaatcat cttgcttgta ttgttttgta ttttctctgc aatttcttgg
     2941 attttgataa gcaatccaga aactattttg tatagtcttt caacctcaaa tgtagattca
     3001 ttattcttga attttgctat gtcagtagca acctgcttta ttccatctga aatgatgttg
     3061 tcaggttcgc ctagcaaagg aagaattttg tttgctattt tttcaatctc cacagatgtg
     3121 agttctggat aaccaccaat tcttaaaaat tcgaccgcag cctttggata gactgttttg
     3181 taaatcctat ctgaatgaac aggaccaggg tttgtcgcga tcgaccgaat ccctttttcc
     3241 actagttccc atgctaatgc ttctacaagc ctgttcttcg ctccttgtgc agcagtataa
     3301 ggagtcctaa accggtatgg tctttgttca taacgatttt cttcagtaaa gaacgtcgta
     3361 attgtaatta tctctcctcc tggttccatt gtctgcagac tctgaattga agtccagaaa
     3421 gtacctgtga ggtgaatagc aacgcaatct ctgaattctt tgaaatttgc atttgtaaat
     3481 gtctttactg gacctgaaac ccctgcatta tttacgacga tatggacttt accaaattcc
     3541 cgtttaatat ctttgaacat cttattgatc cctatctcgt cggatacatc tactcctgaa
     3601 aaagttcgta ctttacctga agatcctacc tctcttatga catcattcaa gatctcagat
     3661 gtttgctcaa gaggctcctt cctcctgccc atgataataa tattggcacc attaagagca
     3721 aatttcttgg cgattgcttg gcctatgcct gttccgctcc ctgttattac aaccgttttg
     3781 tcagtaaatt ttaaagatga ttttgtattt tgatattgca ttttaaataa tcactcagca
     3841 gatattcaat cgttgattta agaattactt acgtaatata tcataaatct ataaatatat
     3901 tgcatttttc atgataaatt cgatgtcaag tacctgaaga gaactgatga cagtatccaa
     3961 gtcatgatat tgatactgac atagaaaatg tttgatacag aacatgttat gtcaattttt
     4021 tatagcgtta aactaattgt atcttctata tttaatattc tagcggtttt gtagttacct
     4081 atcataagac tatttataaa atattattcc ttttcataga gtatagtaag tatgtcgtaa
     4141 tgccgtagct cctgtgtatt aattacggta ttgtaccgac aacttaatta aaagctgccg
     4201 atcgaatatt atcattgagc attccagaag caaaatttaa gatcgatgtt agagaaggta
     4261 ttgtcgagct agaaggtaac gagaactttg ttgataagca tctagataag tttgaggaaa
     4321 tcttcaaatc tgcaataaaa gagactatgg cacaaggatt tgagtgcaat acgactgatg
     4381 tttcagcatt accacaacga gacattgaaa agagttttga tacgtctaga tcagaattta
     4441 ctaaaatgca taacagtact aagcatacaa caaaacaatc tattcctctt attcctgtag
     4501 atttaaaggc gaatgaaaaa aaaattgcct taagagagtt ttatagtgat aaaaggccgg
     4561 ttaatcatta tgaaaagacg gcagtattcg tatattatat tacaaagctc aacaaacaaa
     4621 tagaggtcaa atttggtgag attttgtcat gttatgaaga agtagatgaa aaaaaaccca
     4681 gtattgcaga tatcatcaaa aattcgatca gatataaagg gtggctagag tggggatctg
     4741 ataaattcac cacacgccta acgatctctg gagaaaactt tgtcaagttc gatttgccca
     4801 aacaaaaaag atcgcaactg aatgaacaac aacctacaac attacttctt ccacataatt
     4861 gaattcttta ttaggctctc caccagtcaa agcctacgaa atcaaccttt ttttctttaa
     4921 cttttggaat tgctaatatg aattgcttct tgactgtggt agccaatctg cctgcaagta
     4981 caattccggt tgctgtcatc tgctccatag gtctaaagac ttgaaccaag tatggagcat
     5041 ggtcgatccc tggtccatgt tcatatactg caaagtcaca gccaaatttg attccaggag
     5101 atactatgta tcccttatct ctcaagctct gaaaaacttg atatttcgta tcaaaatcga
     5161 catattctct tctgcaaata gctttgatac ccctgaatga tatcttcttg ccatcaatat
     5221 gatatacttt taatttacca gtatgaacga gataacatcc ctctattaaa tctaaaatta
     5281 aaggagtatc aaattgtgtt ccttttggtt ttggaacgcc tagaggtttg ccatagtatc
     5341 cattcccaaa taaagtacga gattcctgta tactccagac aactatccta ttttctacta
     5401 atttcccaat aacaggattc attacatact caatgctagg atgataaatg aatcagatgc
     5461 ctcttgacat ttatctgcca tgccttcgat tccctctatt gcatccttta agagcaacag
     5521 atctcttgta gaagaaattt cgttaagtgc ttttataata atagctctgt atttggcatc
     5581 tactcgacgt tctaattttt gaacttcctg agcaaggtca attgtgctag ctggatttat
     5641 acttaatgcc cttgccattt catttaattt gaaaattgcg tccacgacca tccctattag
     5701 ttgtttaaga tcctcatcaa atttaccttt ttttaaagaa gaaattttca tattcgcaag
     5761 tctaaatgca attccactga tatagccagc aatgtcgtcc attatataag cagtccggag
     5821 aacatcttct ctataaacca taagacttcc tatttcggca acttcacgcg tgatcttcct
     5881 tcgaagattt tctacttctt cctctgcatt tgtcatgcgt tctatacata cctgaatatc
     5941 tttatcatct gctttgataa gagatgcagt aagtgttgac aggtccctag ctgaatttaa
     6001 aattctgtta atttcatcat gtaaaactgc caacgctttt cgcttggctt gaacttctaa
     6061 ttcgccactg tacattttat atagaaaata ggtatccagg ctaataattc ttttgacatg
     6121 tacagaaaat ttagtacctt tagcttgaaa tcatgtttaa aataatatct tctaataacc
     6181 aatagtagaa tacctaaaac aatatcaaat aagatggatt acagttttat tagtgtttgt
     6241 tgattctgca aaaacgatgt ttaattctaa ttggattaga acagtacaag cggatataag
     6301 gttttggata aatacattta caattggctt gttatctgga tttaacgaga tttaatagta
     6361 atgtaaataa atggtaaagc aatcagtctc tagagaagaa tctgataatg gggaagaaca
     6421 tgtgaagatt ggggaaaa
//
LOCUS       DASQSJ010000132         4060 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_406966, whole genome shotgun sequence.
ACCESSION   DASQSJ010000132 DASQSJ010000000
VERSION     DASQSJ010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406966"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            818..1369
                     /locus_tag="VE223_02705"
     CDS             818..1369
                     /locus_tag="VE223_02705"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HZC20532.1"
                     /translation="MQTITTDSLATWNYEELNYIETKLLQCVSKNPGIRYRELLRLSN
                     LSNGVLTYHLALLEKSCRIKVDRNENKKITRYYPNNISLEETNIIGCIRQDAARQIIS
                     FILENDLCTFDEIVGHAKKAPSTISWHLKRLKEAGIVSIQQGHCHLYHVTDREMVSEV
                     LYKYKQSFIDKVVDNYTKIIEDL"
     gene            1661..2062
                     /locus_tag="VE223_02710"
     CDS             1661..2062
                     /locus_tag="VE223_02710"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HZC20533.1"
                     /translation="MLTKSIFNVIVPITLSLGLAIILASIHSQQIPVLGQTSASVSIV
                     KGSSSPSIAKPYDPSPLRVKPGTSVTWKNNDSTLHTVTSGLPEQGAVGTLFDSNVIAP
                     GKTFTHAFNNAGTFDYSCTLHPTMRGQVVVK"
     gene            2468..3088
                     /locus_tag="VE223_02715"
     CDS             2468..3088
                     /locus_tag="VE223_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20534.1"
                     /translation="MGSPRYWNVERHIWRLHGGLGEPVNEFGKIRKQCQIEMNLQYGH
                     GYQNTDPQLAPLSHNQVKDIRASATDNYGMDNSNNSKRWDFIDEAIEPVKKLLEFNQV
                     LARLSTLSQQYSYHSPSAIAYEYPLLLSTPMNRSNLRAMNIGNNSANRSFTNESNNNK
                     RIAQGGTNLKTATCPGGKLVSVKRVVITVWTLVGIEYNTIQLGWFI"
     gene            complement(3128..3679)
                     /locus_tag="VE223_02720"
     CDS             complement(3128..3679)
                     /locus_tag="VE223_02720"
                     /inference="COORDINATES: protein motif:HMM:NF017666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA N-6-adenine-methyltransferase"
                     /protein_id="HZC20535.1"
                     /translation="MSSKKKKNNQSQSTRITDMMSRNAALFSGKYIEYGTPKKLYRQL
                     DSEFHFVLDPCTTKDNPLNVPICFTKEDDGLSKEWNYCVIDNDGLRRQAVYVNPPYGK
                     NVVDWVKKAYSQSAKHDITIVMLLPARVDTRWFHDYIYNKPNVEIRFIRGRLKFETSV
                     QHIPNTAPFPSLIVIFHPRRRHY"
BASE COUNT         1332 a          750 c          787 g         1191 t
ORIGIN      
        1 aacaagatgg actatgggtt ccattaatag taaatcaaga tggtatatat tattccacgg
       61 acaccagaga tacaaagtct accaagaatt aggaattaag ccacattaca tagttaaata
      121 gttcaagaat gaattttatg aaaagttatt tgtaattgat tgcaacatac agagaggaca
      181 gctaaacaat ttccagagtc aaattggcat taaagtcaat caaagaaatt gctaggaaga
      241 acaggcaatc taaccttagg cagaattcta tttatttacc gactgacaga aatcagacgg
      301 tccaaagtga atgctgctat tctggttatt gctaagagta ttgtagctgt acgctcacct
      361 attgtatgat ttatacataa aactcctata taaatatagt attattgata acaaggaaat
      421 taataaataa tttcgccttt agtagtcgag aattgccatt tcttgtaatc ggtgcgtgtt
      481 gccatagcca attccaaatc cgcaacagtg ctcatacgat agcgtaaaag gtggaatcat
      541 aaaatcttgt tcgaaggttg taccaatgta cttaaatcac aaaaggagta attcagatgt
      601 aagatatgcc gacagggaga gttctatact ttccaatcaa gattaaaccg attattatca
      661 aaacaccatt gactatagct actttagcag tagcgcaact tatcctttat attgcaaatt
      721 catttatcat taaccacact attcttcaaa tagttattgt tagcatagct ataataccct
      781 tctacaacat aaaagtaatg aggatgacca agtagacttg caaacgataa cgactgatag
      841 tctagctact tggaattacg aagaattaaa ctatattgaa acaaagcttt tgcaatgcgt
      901 tagtaaaaat cctgggatac gctacaggga gctcttgagg ttgagcaatc ttagcaacgg
      961 tgttttaaca tatcatttag cattacttga aaaatcatgt cgaataaagg ttgacagaaa
     1021 tgaaaacaaa aagataaccc gatactatcc taacaacatt tcattagaag aaacaaatat
     1081 cataggatgt ataagacagg atgctgcaag acagataata tcattcatat tagaaaatga
     1141 tctatgtact tttgatgaga ttgtagggca tgcaaagaaa gcaccatcta ctatatcatg
     1201 gcatctcaaa agactaaaag aagcaggaat agtatcgatt caacagggac actgccacct
     1261 ctaccatgtc acggatagag aaatggtctc tgaagtattg tacaaataca aacagagctt
     1321 tatagataag gtagtagata actacaccaa gatcatagaa gatctttaga tttgaccagc
     1381 aggaaaaaat tccagtaaag caaacaaagg aacgtctttt ctatacgagg gttaaatgac
     1441 atcttcccgc catgagcgat tcttgtatag ccgttttaga tacttcctaa caatttttgt
     1501 tttcagctgt aaagtagtaa gagagtaata gccaatctct acctcctgct ttgttgtata
     1561 gcaaaggagg tcttagttga gagatatgtt aggaagaaaa gattcactta ggatcttaaa
     1621 cgataaatat atctattaca attgcgctga ttggttagat ttgctaacaa aatcgatatt
     1681 caatgttatt gttcctataa cgttatcact cggacttgct atcatattgg cgtcaattca
     1741 ttcgcaacaa atcccagtat taggacagac ctctgcgtct gtttcaatag tcaaaggctc
     1801 ctcatctcct agcattgcaa agccctatga tccatcacca cttagagtaa agccgggcac
     1861 gtcagttaca tggaaaaaca atgattctac tttgcatacc gtaacttctg gtcttccaga
     1921 gcaaggggcg gtaggtactt tatttgattc caacgtaatc gctccaggaa agacatttac
     1981 acacgccttt aataatgcag gtacttttga ttatagctgt actttgcacc ccactatgcg
     2041 tgggcaggtt gtagttaaat agacaaagat gagcgttacc agttcatcta gctaggaaga
     2101 gaatatttta tggtaagcct ttgaaataaa cgaataatcc agcaatatgt ctgaaatatg
     2161 ttttgttaat ttctaaagtg gagattgatc taagacatgt gatccagttt catattggca
     2221 atatccttgt tatcgctccg ccttcctgta agtagagtcg atctagaatc tagtgttgta
     2281 gcaatgtatt tatacaaagt accactatat atatctagcg tataacttgt accgacatat
     2341 tatgagtaac tcggagtcac tcccgagtta ctccggagca aagcacttat cgtcatcagc
     2401 atcaagcagg aggaaccaaa agccaacgat gatcaaaagt cgtagatgga attgcccaca
     2461 ttgtcagatg ggatccccaa ggtattggaa cgtggagagg catatttgga ggttgcatgg
     2521 aggtttaggg gagccggtga atgaatttgg gaagattagg aaacaatgtc aaattgaaat
     2581 gaatctacaa tatggtcatg gctaccagaa cacggatcca cagttggcgc cgctttctca
     2641 taatcaagtt aaggatatta gggctagtgc cacagacaat tatggaatgg ataatagtaa
     2701 taatagtaaa agatgggact ttatcgacga ggctatagaa ccggtaaaaa aattgctcga
     2761 attcaatcaa gtgctcgcac ggctctcaac cttaagccag caatactctt atcattctcc
     2821 ttcagcaatt gcttatgaat atccattgct tctgtcgacc cctatgaata ggagtaatct
     2881 cagagctatg aacattggta acaacagcgc caacagaagc ttcacgaatg aaagtaataa
     2941 taataaaaga attgcacagg ggggaaccaa tcttaaaaca gctacatgcc cgggcggcaa
     3001 attggtatca gtcaagagag tggtcatcac cgtctggaca ttggtgggaa tagaatacaa
     3061 taccatccaa cttggctggt ttatataata tatctcattg gcaaggtgcc tattcttttt
     3121 cctatagtca ataatgcctt cttcttggat ggaatatcac aatgagtgat ggaaaagggg
     3181 cagtatttgg aatatgttga acgctggttt caaatttcaa tcgccctcgt ataaaacgta
     3241 tctccacatt gggcttgtta tagatgtaat cgtgaaacca tcgagtatct actctagctg
     3301 gcagcagcat aacaatggtt atgtcatgtt ttgcactctg gctgtacgct ttctttaccc
     3361 agtctacgac gttcttccca tagggtgggt tgacatatac tgcttgtctc ctaagtccat
     3421 cattgtcaat gacacaataa ttccattctt tggataggcc atcatcttcc ttcgtaaagc
     3481 atattggcac gttcaatgga ttatctttcg tagtacatgg gtcaagaacg aagtgaaact
     3541 cagagtctaa ctgcctatat agcttctttg gcgtcccata ttctatatat ttgcccgaaa
     3601 acaaagctgc gtttctcgac atcatatctg tgatcctagt ggattgactt tgattgttct
     3661 tcttcttctt gctactcaac tgttatccac gctgtgtgat gatctattgc gatcttttga
     3721 tctataaata tagtgtgcat atttgagcaa tttaaaacaa cgtgagtctt cttacttatg
     3781 aaggatcgat agatacaagg aaggcatttt gttgaattgg cataacgacc tggtgaggtc
     3841 ccaaacacta cacctactga agggttaggt ttaatagatg gtattttttc ttcaatccag
     3901 tcatactaat cttaacatga caacaacaag aacaaagggg aaggtttgac gcgcttggat
     3961 gaaaggaaaa aggatttaaa gaatggtgaa attgaacaga gagactcccc cgctcaactc
     4021 ctacgtagaa cacgtttatc ttttcttgta acttgtggtt
//
LOCUS       DASQSJ010000133         4503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_335964, whole genome shotgun sequence.
ACCESSION   DASQSJ010000133 DASQSJ010000000
VERSION     DASQSJ010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335964"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1109)
                     /locus_tag="VE223_02725"
     CDS             complement(<1..1109)
                     /locus_tag="VE223_02725"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HZC20536.1"
                     /translation="MLESTTTINPFEVALKQLDEAAKLIKLDRGVQQVLAHPKRVLTV
                     SIPTRMDDGEIKVFTGFRSQHNDARGPFKGGIRYHPQVTIDEVKALSMWMTWKCAIAD
                     IPYGGGKGGIICNPKEMTEGEIERMTRRYAYGIADIIGPHTDIPAPDVYTGGKEMSWI
                     MDTYSALKGNFVQPELITGKPLAIGGSLGRNEATGRGLSFTVREAAEKLKINMKTATV
                     AVQGFGNAGQFAAQLVEEQGAKILAVSDSKGGIYNKDGLQAGALRKHKEKTGSVVGFT
                     GAKAIDNEDVLETDCTILIPAALENQITKKNAGKISAKIVAEAANGPTTPEADEILYK
                     NKTLVIPDVLANGGGVTVSYFEWLQNLRREYWSEN"
     gene            1358..1528
                     /locus_tag="VE223_02730"
     CDS             1358..1528
                     /locus_tag="VE223_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20537.1"
                     /translation="MNSGLWIIVIIPSIIAFIFAIFVAVNMVIDVSARSHTVNSKIVG
                     HVIRLKVLLDNS"
     gene            1863..2417
                     /locus_tag="VE223_02735"
     CDS             1863..2417
                     /locus_tag="VE223_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20538.1"
                     /translation="MEILEEKVIAKYLFDKYCSNPNNWNFVISRSALSDGFFDATVTN
                     TDEVWQLKIDSIYKPFPIMIGAKVDTDSTVIERRINAANTAPFGFRKLDTPVIMDIFK
                     KLTEEQQQQMNQYTEIDFNNYLYSILGSLKTVRPVSGKNYAYGPFLFSEKNIVNTSNI
                     QKQVSEKLAFKLRDNLRNKYSSYG"
     gene            2642..3010
                     /locus_tag="VE223_02740"
     CDS             2642..3010
                     /locus_tag="VE223_02740"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HZC20539.1"
                     /translation="MENLEPNQFDKVLSKEMKAVVMFYADWCPFCQKFKPVFESAITK
                     GPEHTKSKNKFSYKLYGAKVNDDDNPLWDKFSINSVPTIIAFDQNKIVARRDARMGIG
                     LTKSDLDSILEDLKRADQIA"
     gene            complement(3403..4404)
                     /locus_tag="VE223_02745"
     CDS             complement(3403..4404)
                     /locus_tag="VE223_02745"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HZC20540.1"
                     /translation="MLPIICLSHKEDVDGISSAALIKAAFKSKPVIVLVDYSNIVHNL
                     QKLALSSSMEGKVDRFFVCDLGLSKKNEQKFLEIIGKIISKGSKVTYIDHHDLSRETA
                     LALKKMGVVLIHTVDECTSIQVYNKYKKKLKSNAAFFAAAGALTDYMENKPIASSIVS
                     RFDRHFLMLEATALSYMISANQHDNKFLIKIVDTLADMKYPHEIEGGFSIAEKYAKKV
                     SEAAKKIEESTIKMDNLAYMQSNLDLSANMIVNFVLGISERPVAMVYKLKGDIKSFVI
                     SIRGSKDCNVHLGRLVNEIASEIGGSGGGHDKACGAVIPKDKLDLFIQLLNERVDCN"
BASE COUNT         1399 a          897 c          781 g         1426 t
ORIGIN      
        1 tcgttctcgc tccaatactc ccttcgaagg ttttgtagcc attcaaaata cgataccgtc
       61 acaccgcccc cgtttgcaag aacatcagga atcactaagg tcttgttctt gtataaaatt
      121 tcatccgcct ctggtgtcgt aggaccgttt gcagcctctg ccacaatctt ggcagagatt
      181 tttcctgcat tcttttttgt tatttggttt tcaagagctg caggtatcaa tatagtgcaa
      241 tctgtttcaa gtacatcttc attatcgatg gcttttgcac ctgtgaatcc tactaccgaa
      301 cctgtctttt ctttatgttt tctcaacgct ccagcctgga ggccatcctt attatagatc
      361 ccacccttag aatctgacac agccaagatc tttgctcctt gttcttccac tagctgcgcc
      421 gcaaactgac cagcattgcc aaatccttgg actgccactg tagcagtttt catattaatt
      481 tttagttttt ctgcagcctc tctgacagta aaagataatc ctcggcctgt tgcttcgttt
      541 cttcccaggg atcccccgat ggccagaggt ttgcctgtta tgagttccgg ctgaacaaaa
      601 ttccctttaa gagcagagta tgtgtccatg atccatgaca tttctttacc accagtatag
      661 acatctggtg caggaatgtc cgtgtgcggg cctataatgt ctgcgatgcc atatgcatat
      721 cgccttgtca tacgttcaat ttcgccttct gtcatttctt tgggattgca aattatacct
      781 cccttacctc cgccataagg aatatctgca attgcacatt tccaagtcat ccacattgaa
      841 agtgctttta cttcatctat tgtgacctgc ggatgatatc tgatgccacc tttgaaaggt
      901 ccacgagcat cattatgctg tgatctaaaa ccagtaaaaa ctttaatttc gccatcatcc
      961 attctagttg gaattgagac ggtgaggact cgcttcggat gcgctaatac ctgttgcact
     1021 cctctgtcta gctttatcaa tttggcagcc tcatctagct gttttaaagc aacctcgaat
     1081 ggatttattg tagtcgtaga ttctaacaca atactgtttg aaaaaactga tgtatttaag
     1141 tgttgaaaga ctttgacagt acatgattat gtggacagga cgaaacgatt atcttatcgt
     1201 gccttctgat ccgctacgat gcgttcatga aaggattggg acaggcaagt tttgatcatg
     1261 gttcagcaac aagtacattt tcgttagttt attcttgtgc acttggtaca tgaaaagttt
     1321 atttatagtg ttttgcgctt gtgagtacac aagaaccatg aattctggac tttggattat
     1381 tgtgattatc ccatcaataa ttgcttttat ctttgcaatc tttgtagcag ttaatatggt
     1441 gatcgatgtc tctgctagaa gccatacggt aaattcaaaa attgtaggcc atgtcattag
     1501 gctaaaggtg cttttagata atagctgaag cataaataga catagagcgt acagatgtag
     1561 taataataat aataagcaac aagaacagaa gttgtacaac attactttga gataaattac
     1621 agctacatta caggtactgt caagcaatat ccaataaaaa acttgttaat gtagatcgga
     1681 ttgtcgatta gatgatgatg acttgttgta gatgaccgta gtatttttaa caatatttac
     1741 ttactgacta gcgagccagt ttctctatct attaggactt ttgatcttta tgataaaagc
     1801 cttttcccgt attaatacgc aactctcata ttatcgtaga gcataataga tgtgacacag
     1861 acatggaaat tctagaagaa aaagtaatag ctaagtatct attcgataaa tattgttcaa
     1921 accccaataa ctggaatttt gttatctcca gatccgcttt aagtgatgga ttcttcgacg
     1981 ccaccgtcac aaatactgac gaggtgtggc agcttaagat agattcaatt tacaagccat
     2041 ttccaataat gattggtgca aaggtcgaca cagattccac agtaatagaa agaaggatta
     2101 atgctgctaa tacagcacct tttggattca gaaagctgga tacacctgtg ataatggata
     2161 tctttaagaa actgactgaa gaacaacagc aacaaatgaa ccaatataca gaaatcgatt
     2221 ttaataatta tctctattca atccttggtt cacttaaaac tgtaagacca gtaagcggaa
     2281 agaactatgc gtatgggcct tttttatttt ctgaaaaaaa catagtgaat actagcaata
     2341 ttcaaaaaca agtctccgaa aaattagctt tcaaacttcg tgataattta cgaaataagt
     2401 attcaagtta cggctagata acaaatcaaa tatgttggct tgcggaacat tagtaatatc
     2461 aggtaatccc tgccaatgtt ttaataggta tttgccagag tgctaataat agcaatataa
     2521 tataatacaa tttaaactga tgtccaaaca aatcgagatt taaatgatgg tggtgggcct
     2581 ttaccggttc ttgaaatcca gttaaagctc caattatatg tatgaatagc taacatgaac
     2641 tgtggaaaat ttagaaccca accaatttga caaggtatta tccaaggaaa tgaaagctgt
     2701 ggtaatgttt tatgcagact ggtgcccctt ctgccaaaaa tttaaacctg tgttcgagtc
     2761 tgcaataact aaaggcccag aacatacaaa atcaaaaaac aaattcagtt acaaattgta
     2821 cggagcaaag gtcaacgatg atgataatcc actatgggac aaattctcaa taaattcagt
     2881 tcccaccatc attgcatttg accaaaacaa aatcgttgca cgaagagatg caagaatggg
     2941 cataggttta acgaaatcag atctcgattc catcctagaa gatctaaaga gagcagatca
     3001 aattgcttaa cagatattac tcccttatat atgtaataac tggttctgtt atcatagtag
     3061 tagcagtaga cggctcaaat cgcatgaaaa caaaggcttt gtatagagac tgtcggctat
     3121 atgaaagagc cttgcactca tcatcattat ttcaaatcat ggcccaaatc tgaaacgatt
     3181 cccttcttgt actattacta tcactagtat tacgtcttat tttttgtttc tcacctacct
     3241 caaccaataa ttttccaagg taagcctgta tagatcgagg acatcagaaa caacgttatc
     3301 gtcgcatccg gttcagggaa agccacatat cgatgccaat tgtgcattaa agaaaggttc
     3361 aacaatcgaa gcggagagct ttacttgttg atcaaaatag atttagttgc aatcaactct
     3421 ctcatttagc aactgaataa agagatcaag tttgtctttg ggtataactg ccccgcaggc
     3481 tttatcatgt cctccaccgc ttcctcctat ttctgaggca atctcattta ccaatcttcc
     3541 aagatgtacg ttacaatcct ttgatccacg aatagaaata acaaaagatt tgatatcacc
     3601 ttttaattta tataccattg caacaggcct ttctgaaatc cctaaaacaa aattaacaat
     3661 catattagca gataaatcta ggttactttg catgtatgct aaattatcca ttttaattgt
     3721 agactcctcg attttctttg cagcctctga gacttttttt gcgtattttt cagcaattga
     3781 aaatccacct tctatctcat gaggatactt catgtcagca agcgtatcga caattttaat
     3841 gagaaattta ttgtcatgtt ggttagctga aatcatgtat gaaagggcgg tggcctctaa
     3901 catcaaaaaa tgcctatcaa atctagacac gatcgatgag gcaataggct tgttttccat
     3961 atagtcagta agagcgccag ctgcagcaaa gaaagcagca tttgatttga gcttcttttt
     4021 atatttatta tatacttgga tgctggtaca ctcatccaca gtatgaatga gaactactcc
     4081 cattttcttt agagccagtg cagtttctcg actcaggtca tgatgatcga tataagtcac
     4141 cttcgaccct ttggatataa ttttcccaat gatctctaaa aatttttgtt cattcttttt
     4201 gcttaatcct aaatcacaaa caaaaaacct gtcaaccttt ccttccatcg aagatgaaag
     4261 agctaacttt tgtaaattat gaacaatatt ggagtaatca accaacacaa tgacaggctt
     4321 acttttgaat gctgctttaa ttaaagcagc agacgatata ccatcgacat cttctttatg
     4381 ggaaaggcag attattggta acatggctaa ctaaattttt agaagttcac aatatcttta
     4441 ctatccataa catcatgttt tatcactatg aaaaatatta tctattaaca tatcataagt
     4501 tct
//
LOCUS       DASQSJ010000134         2118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_216213, whole genome shotgun sequence.
ACCESSION   DASQSJ010000134 DASQSJ010000000
VERSION     DASQSJ010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216213"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..932
                     /locus_tag="VE223_02750"
     CDS             <1..932
                     /locus_tag="VE223_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HZC20541.1"
                     /translation="SIVEHLEICDTKLEGSVRCDANISVGQGKRIEIKNVGSFREVEK
                     ALNYEITRQKTMSIHEIEIKAETRHWDDLRKVTKQARVKEEEQDYRYFPEPDIPTVIL
                     GNTFLSSLKTKMPELPNERKNRFITDYMLSEHVSQVLIDNKGLADFFESAVKVYSSPK
                     EIANWIVSDLMGFIGENYYHHHYHSPSSKEEKKSELKVEAKHIAELAKLVDQNTISRS
                     TAKMILNHIIKTGEMPSQVAEKTNSSKIDDKTVISEAIESVFRSEKSAVSDAKLNFNA
                     ANFLLGKLMQLTKGRADPKIALDLIKKKLIELD"
     gene            complement(929..>2118)
                     /locus_tag="VE223_02755"
     CDS             complement(929..>2118)
                     /locus_tag="VE223_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HZC20542.1"
                     /translation="LKGDFQVLEFTVGKRKREPSYARLLIRGKNQQHLYELLESIYRE
                     GAQPVSVRPVMLESAVIDMVMPDNFYSTTNNITQIYYNNSWINVENMMMDKCIVLDVE
                     KKIAVCKMIRDVKKGDMIVVGEQGIRIIPQERPREGIDIFQFMSSDSSSERPTQHIAR
                     KVANDIYDTMKAGGKIIVVSGPVLVHSGASESLAKLIQMGYVHGLLAGNALAVHDIEN
                     ALMGTSLGMHVKDGTLAVRGHRNHMQAINEVFKAGSLKAMVQKKILENGVMYECIINN
                     IPFVLAGSVRDDGPIPDVITDIVEAQRKYKILLKDAKMVLMLSTMLHSIAVGNMLPAS
                     VKVVAVDISQPVVTKLLDRGTNQAIGVVTDVGTFLPMVVQHLQQMTITYSKKEEIKDE
                     YKN"
BASE COUNT          674 a          415 c          370 g          659 t
ORIGIN      
        1 cctccattgt tgaacacttg gaaatatgtg atacaaaatt agagggctca gttagatgtg
       61 atgctaacat ttctgtgggg caagggaaaa gaattgagat taaaaatgtt ggatccttca
      121 gggaggtaga aaaagcactt aattacgaga ttactaggca aaaaacaatg tcaatacatg
      181 agatcgaaat caaagctgag acacggcact gggatgattt aaggaaagtt actaagcagg
      241 ctagagtaaa agaggaagaa caagattatc gatactttcc tgaacctgac attcctacag
      301 tgatcttggg aaatacattt ctatcttcac tcaaaacaaa gatgccagag ctccctaatg
      361 agagaaagaa ccgtttcatt actgattata tgctttctga acatgtgtct caagtattaa
      421 ttgataataa aggccttgct gatttttttg aatctgccgt caaggtttat tcatcaccaa
      481 aggaaattgc aaactggatt gtttctgatc tcatggggtt cataggtgaa aattattatc
      541 atcatcatta tcattctcca tcttcaaagg aagagaaaaa atcagaattg aaagttgaag
      601 caaaacatat tgcagagctg gcaaagctag ttgatcagaa tactataagt agaagcactg
      661 caaaaatgat cctcaatcat ataataaaaa ctggggaaat gccatcacaa gtggcagaaa
      721 agaccaattc ttcaaaaata gatgacaaga ctgtcatttc agaagctata gaatctgtat
      781 ttagatccga gaaatctgct gtaagtgatg caaagctgaa tttcaacgct gccaactttt
      841 tgcttggaaa gcttatgcag ctaacaaaag gaagggcgga tcccaagatc gcacttgatt
      901 taataaagaa aaaattaatt gagttagatt aatttttata ttcatctttt atttcttcct
      961 ttttagaata tgtaattgtc atttgttgta aatgctgtac aaccattggc aggaaagtac
     1021 ctacgtctgt tacaactcca atagcttgat ttgttcctct atcaagaagc tttgttacaa
     1081 ctggctgact tatgtcaaca gcaacaacct tgaccgatgc tggcagcatg tttcctacag
     1141 caatagaatg caacatcgta gatagcatca aaaccatttt tgcatctttt agtaatatct
     1201 tgtattttcg ttgtgcttca acaatatctg ttataacgtc aggaatgggc ccgtcatctc
     1261 taactgaccc ggccaacacg aatggaatat tgttaattat gcattcgtac attacaccat
     1321 tttctaaaat ctttttttga accatagcct tcaaagagcc tgctttaaag acttcgttaa
     1381 ttgcctgcat atgatttctg tgacccctga ctgcaagggt gccatccttg acatgcattc
     1441 ctaacgacgt ccccatcaat gcattctcta tatcatgaac tgcaagagca ttgccagcca
     1501 acagtccatg tacatatccc atttgaatca attttgcaag ggattctgac gcacctgaat
     1561 gaactagtac tggtccagaa actacgatta tttttccgcc tgctttcatt gtatcataaa
     1621 tgtcatttgc gacctttcga gcgatgtgct gtgtaggcct ctcactagaa ctatcactac
     1681 tcataaattg aaaaatgtca ataccttcac gtggacgttc ttgtggaatt attcttattc
     1741 cttgttctcc cacaactatc atatctcctt tcttcacatc acgtatcatt ttacatacag
     1801 ctatcttttt ctcaacatcc aacactatac acttatccat catcatattt tcaacattaa
     1861 tccatgaatt attatagtaa atctgggtaa tgttgtttgt tgtgctgtaa aagttgtcag
     1921 gcataaccat gtctatgaca gccgattcaa gcatgaccgg acgaacagat acaggttgtg
     1981 caccttcccg ataaattgat tctaataact catatagatg ttgttgattt ttgcctctaa
     2041 ttagaagacg agcataactt ggttctctct ttctctttcc gacagtgaat tcaagaactt
     2101 gaaagtcgcc tttaagat
//
LOCUS       DASQSJ010000135         2523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_286844, whole genome shotgun sequence.
ACCESSION   DASQSJ010000135 DASQSJ010000000
VERSION     DASQSJ010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286844"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..373
                     /locus_tag="VE223_02760"
     CDS             <1..373
                     /locus_tag="VE223_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HZC20543.1"
                     /translation="WLKEQVARLQQLQQNLQGIMMQKQQVELEIAETDRALEEIKKTG
                     GEDMIYKSAGPLLIKSKREDVMKELEEKKELSNTRVMVLTKQETRVKDNLKEVENKIN
                     QMIRGGAQGVSSTSTPRPKNG"
     gene            660..1424
                     /locus_tag="VE223_02765"
     CDS             660..1424
                     /locus_tag="VE223_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HZC20544.1"
                     /translation="MPVRIVVDEREKGSRIPTLLRQAGAIIDFAQLKVGDYIVSPETA
                     IERKTVHDLISSIYDGRLFVQCSELAQHYSKPVVIIEGNIVDLLDFPTEIGDDDQLKI
                     LEERIPLAYNALAVIALDFRIPIIHTPCAEYTSQLLVILVNKSLQEGRSSGPLLKRIK
                     KNNPIYIQQLSILSSLPGIGDKLAVRMLKKFRTPQRALSASIAELARIPGFGNARAEK
                     IRKILDYPDNDKMELTQKTLLEDIDQNQSTGKSSHI"
     gene            2021..2512
                     /locus_tag="VE223_02770"
     CDS             2021..2512
                     /locus_tag="VE223_02770"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HZC20545.1"
                     /translation="MVRKISLLIPLIIVAVIVGAIGLTFVPSEIKNKRLEFAQGSVKI
                     NDDLIKVEIAKSNAEKQRWLMFREERLPLNSAMLLIYDKPDLYSLWLLNIEYNLDLIW
                     LDESGNVVYMVKNVPPCKNTFDAFSCTYKNTKPAKYVIAATSGFIEEHKITNKSKMTI
                     ISI"
BASE COUNT          948 a          415 c          459 g          701 t
ORIGIN      
        1 atggcttaaa gagcaagtag cacgcttaca acagctccaa cagaatttac aaggaatcat
       61 gatgcaaaaa caacaggtag agctagaaat tgctgaaacc gatagagctc tagaagagat
      121 aaagaagaca ggaggtgaag atatgatata taaaagtgct ggtccattgt tgattaaatc
      181 aaagagagaa gatgttatga aggaacttga agaaaaaaaa gaactatcaa atactagagt
      241 aatggttctt acaaaacagg aaacaagagt aaaagataac ctaaaggagg ttgaaaataa
      301 aattaaccaa atgattagag gaggagcaca aggtgtttct agtacttcta caccaagacc
      361 caaaaatgga taattagata caaaacttca gattacaata aaatctgttc agttttgttt
      421 aaactccctg ctattattca aacaaactat gaaaataaaa taaacgtgca tatattgatc
      481 agtgaacagc tgcgtaccac tgctttataa gctgaagtga agaatggagt tttaagaagg
      541 aatagagaac atgtcaattt ggatgataca agtcaatatc gataactatc tagcagtgag
      601 ctattggaaa atgaaagaag aaagttagac acattaacaa cccctgatta aattaacagg
      661 tgcctgtcag gattgtagtc gacgaaaggg agaaaggtag cagaattccc actctactac
      721 gtcaagcagg tgcaataatt gattttgcac aactaaaagt tggtgattat attgtctctc
      781 cagaaactgc aatagaaaga aaaaccgtac acgatctaat cagctcaatc tatgatggaa
      841 gattatttgt acaatgttca gaacttgctc agcactattc taagcctgta gtaattattg
      901 agggaaatat tgtagatctc cttgactttc ctacagaaat aggcgatgat gaccaattaa
      961 agatattaga agaaagaatt cctttagcat ataatgcgct tgcagtaata gcactagact
     1021 tcagaattcc aatcattcat actccatgtg cagaatatac atcacagttg cttgttattt
     1081 tggtaaataa atcattgcaa gaaggacgaa gcagcggtcc tttgttaaag aggataaaga
     1141 agaataaccc tatttacata cagcaactgt caatcctctc ttcattgcca gggataggtg
     1201 acaaacttgc agtgagaatg cttaagaagt ttcggacacc ccaacgtgca ctaagtgcat
     1261 ccattgcaga acttgcaaga attcctggtt ttggaaatgc tcgtgcagaa aaaatacgaa
     1321 aaattctgga ttatccggat aatgacaaga tggaactaac ccaaaagaca cttttagaag
     1381 acatagatca gaatcaatca actgggaaaa gttcacatat atgattggat gccccctctc
     1441 tcatttaatt aataattaga ttcagggtaa acactaaaca agcagttaaa gtttcaataa
     1501 aaatcttgtt cataagagta ttgcgtcatg ctcttacaaa gctttgatgt ctttattatg
     1561 aaaaactggt ttctaccgat ccctgtcata caaagccaat atatatttca taataactat
     1621 ttcaacaata atgctagtta tggtaacgga tcgtgtaaaa atcggatttc ttctcctgat
     1681 tcctaatgtt gcccgtgcac agatgactgt ttaaacagac atttgatata gatgatctga
     1741 aaagtgaaag gtaagatcaa attttcatac atttactggc tcacatggcg gaatcacatt
     1801 atgtatgtag aatcaaataa gaactacaga agatcctgtt cccattacca tcaataccaa
     1861 ccctcaaaca cacagtcaag ccaattatag aaatgaaatc agcaggaaat gctgttcaag
     1921 aattagaatc aatatttaga tcatgcaaaa aataacaggc aataaaaaga gacagcaagt
     1981 aagtttaaat ttttcagcaa accttacttt ctgatccaac gtggttcgca agatatccct
     2041 tctgatacca ttgattattg tagcagttat tgtaggagct attggcctta cctttgttcc
     2101 ctcggaaatt aaaaataagc gtttagaatt tgcacaagga tcagtaaaga taaatgatga
     2161 tttaattaaa gttgagattg caaaatctaa tgcagaaaaa caaagatggc taatgttcag
     2221 agaggaaaga ttacccttga actctgcaat gctcctaatt tacgataaac ctgacttgta
     2281 ttcattgtgg cttttaaata ttgaatataa tcttgatttg atttggttag atgaaagtgg
     2341 gaatgtggtg tacatggtaa aaaatgtgcc tccgtgtaag aataccttcg atgcatttag
     2401 ctgtacttat aagaatacaa aacctgccaa atatgtgatt gctgcaacgt caggattcat
     2461 agaagaacat aaaatcacta ataaatcaaa gatgactata atttccattt agtatatgat
     2521 tca
//
LOCUS       DASQSJ010000136         2628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_366363, whole genome shotgun sequence.
ACCESSION   DASQSJ010000136 DASQSJ010000000
VERSION     DASQSJ010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366363"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VE223_02775"
     CDS             <1..636
                     /locus_tag="VE223_02775"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HZC20546.1"
                     /translation="VHMPDSIISINMLIQILDLFGTMAFAVTGAFKAIEHNSDIVGIV
                     ILSTITGLAGGVMRDIIFGKFPPTAVVNSLYVIITVSSGIVIFSLSNTKETLEFILKF
                     DALGLGVFTLIGSASAYNVFGLNFLAMSFGGVLTAVGGGILRDVFVSEIPLVFTKEFY
                     ASASFLGVIVLFIMLSLGVNLTLASIPAIMVVTAIRLVAMKYNWNMPHARN"
     gene            complement(874..1917)
                     /locus_tag="VE223_02780"
     CDS             complement(874..1917)
                     /locus_tag="VE223_02780"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HZC20547.1"
                     /translation="MIKVFINGYGNIGRRLATALSSDKEIQFIGIAKYTADDKTKEAL
                     ENGFDIYVPKENIKQFKDEGYDVRGIISEAIQKSDIVVDAAREGGGFDNKKNLYEPMN
                     KAAIFQGGEERHGERSVADMIHNSRVNYAKAAGKTYVIQGSCNVSGMGRIMQPLIEKF
                     GDKIRRYDVTLIRRWADLEDSKEIKDSIEWDKNPHHQDDVKDFIPTSNLYVDAYKVPS
                     RMMHLHQMVIRFDGKAPSKDKIIETFRTEFGVAILNSAKGTAAIRKKAMELGFQHGDT
                     NMVHIHQEVLKVQDDIIKIAYSDDQTGMVIPENHLLIQSMIFRRPRQEAVKKSDRLFQ
                     MTKKRKILEEEFG"
     gene            2137..>2628
                     /locus_tag="VE223_02785"
     CDS             2137..>2628
                     /locus_tag="VE223_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HZC20548.1"
                     /translation="MKVLIIDNYDSFVYNIAHLIGELKTNPIVIRNDKITIPEIRKIS
                     PDAIIISPGPGHPADRKDFGICNDIITELGPRIPTLGVCLGHQGIVHAFGGEVVNAKV
                     VRHGKTSIIKYRSDAMLFESVSNPFKATRYNSLVANSKKIPECLEVTAKALDDGEVMG
                     VRHK"
BASE COUNT          742 a          519 c          480 g          887 t
ORIGIN      
        1 gtacatatgc ctgattcaat tatatcgatt aacatgctta tccagattct ggatctattt
       61 ggtacaatgg cctttgcggt gacaggtgcc ttcaaggcaa ttgagcacaa ctctgacata
      121 gtaggtattg tgattctctc cacaattaca ggacttgctg gcggagtaat gcgtgatata
      181 atttttggga aattcccgcc taccgccgtc gtaaattctc tctacgttat aataactgta
      241 agttctggca tagtaatttt ttctctatcc aatactaagg aaacattgga atttatttta
      301 aaatttgatg cactaggtct tggtgtattt acgctaatcg gctctgcttc cgcatataat
      361 gtatttggcc tgaattttct cgccatgtcc tttgggggtg tgcttactgc agtcggaggt
      421 gggattttaa gagatgtatt tgttagtgaa ataccactag tatttactaa agagttttat
      481 gcttcagcga gtttcttagg agttattgta ctttttatca tgctttcatt aggtgttaac
      541 ttaactttag cctctatacc tgctataatg gtggtaaccg ctattcgcct cgttgcaatg
      601 aagtataact ggaatatgcc acatgcaaga aattgagcag tctttgagca tttatctatt
      661 cgagtccagg ctggttataa taataccgta caagatgagt gtcttatgtt atatcaaatt
      721 caaagcaaga aaatccttga gttcaaaagt attatctatt taaaataagg tggatgtctc
      781 atgcacttca aagcgcaagg tgtgcataaa tatagatata tgccctacgt gctagcaaga
      841 acaagataaa tcgtaatacg aaacatttac gtcctaacca aattcttctt ctaatatctt
      901 tcttttcttt gtcatttgaa acaatcgatc tgacttttta actgcttctt gtcttgggcg
      961 cctaaatatc attgattgta ttaacaaatg attctctggt attaccatgc ctgtttgatc
     1021 atcagaatat gcaatcttga ttatatcatc ttgaactttg agtacttctt ggtgtatatg
     1081 taccatattg gtatcaccat gttgaaagcc aagctccatt gcttttttcc taatcgcagc
     1141 tgttcctttc gcagagttta gtatggccac tccaaactcc gtacgaaatg tttcgattat
     1201 tttatccttg cttggagctt tcccatcaaa ccgaataacc atttggtgca aatgcatcat
     1261 cctagaagga accttgtaag catcaacata gaggtttgat gtgggaatga aatctttaac
     1321 gtcatcctga tgatgaggat ttttatccca ttcaattgaa tctttaattt cctttgaatc
     1381 ctcaagatcg gcccaccttc ttatcagtgt aacatcgtat cttcttatct tgtctccaaa
     1441 cttttcaatt aagggctgca ttatcctccc catacctgag acattgcaac taccttgaat
     1501 gacgtaagtt ttgcctgctg cctttgcata atttactcga gaattgtgaa tcatatcagc
     1561 tacagagcgt tcaccatgcc tttcctctcc gccttgaaaa atagccgcct tattcatcgg
     1621 ctcatacagg ttctttttat tatcaaatcc gccgccttct cttgcagcat cgaccacaat
     1681 gtcgcttttc tgaatagctt cggaaattat acctcttacg tcgtagccct catccttgaa
     1741 ttgttttata ttttcttttg gaacataaat gtcaaatcca ttttccaaag cttctttagt
     1801 tttgtcatca gcagtatatt ttgcaatacc aataaattgt atttctttat ctgatgaaag
     1861 cgcagtggca agtcgccggc caatgttgcc ataaccattt ataaatacct taatcaacct
     1921 cttcttatcc ctagactcaa atgagcacag tagtttcgtt attatatata cattccttgt
     1981 tgtaatatct gtcctgaagg acctagactt ttaaatatga ttttgtcttc tagctggacg
     2041 agtgacttcc tggaaaaagg ataagatatg cggtggtggt gctcggtagc atcatgatgt
     2101 ttttataagc ctttgtaaca aagctggtat aactaaatga aggtgctgat tatagacaat
     2161 tatgattcat ttgtgtataa tattgcgcac ctaataggtg aacttaaaac taacccgata
     2221 gtcattagga acgacaaaat aacaatacca gaaattcgaa aaatctctcc agacgctata
     2281 atcatttctc caggtcctgg acatccagcg gatcgcaaag actttggaat ttgtaatgac
     2341 ataataactg agcttggtcc aagaatacct actcttggag tctgccttgg acatcaaggc
     2401 atcgttcatg ctttcggcgg tgaagtagtt aatgccaagg ttgtacggca tggaaaaaca
     2461 agcattatta aatatagatc tgacgcgatg ttgtttgaga gtgttagcaa tccattcaag
     2521 gctacccgtt acaattctct agttgcaaat tcaaaaaaaa ttccagaatg ccttgaagtg
     2581 actgcgaagg cgttagacga tggcgaagta atgggagtga gacataag
//
LOCUS       DASQSJ010000137         2704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_407347, whole genome shotgun sequence.
ACCESSION   DASQSJ010000137 DASQSJ010000000
VERSION     DASQSJ010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407347"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..620)
                     /locus_tag="VE223_02790"
     CDS             complement(66..620)
                     /locus_tag="VE223_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20549.1"
                     /translation="MSEFLTIYPRRINVVRGLQDFIRREEIELDHLSLMVKIKRDEII
                     RTLTSEGFRRVKLENKKPTQIGSGFTKKLTKPWEMHVRLLDMQQGLIAIQAEVEISRK
                     YIQHIRSVRAPVIYEIESILKKHRIEYRIWNAKVREYITNIIDNHQIKLNAPKLPPMP
                     WKPMLGVAITIGLMNALKFIGVNL"
     gene            complement(704..1450)
                     /gene="cofE"
                     /locus_tag="VE223_02795"
     CDS             complement(704..1450)
                     /gene="cofE"
                     /locus_tag="VE223_02795"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HZC20550.1"
                     /translation="MEILTVSLPVKKSRFNLFDSLTRSGFRFRENDILILSSKFVSMS
                     EGSVVNLNKIKASKKAQNLAFKYHMDRKIAELTLRESDYIYKGIPGFLLAVKDGMMAP
                     NAGIDKSNVPSGFVILYPQEPFKSAENLRLKFLVNLGIKVGVVIADSRLMPTRIGTTG
                     VAIAIAGFEPVEDQRGKKDLFGNVMRVTFRAVADSLASMGVAIMGETDESTPVAVIRH
                     TKVIATNRKLSSRDIVVDPAQDIYVRGLER"
     gene            1546..>2704
                     /locus_tag="VE223_02800"
     CDS             1546..>2704
                     /locus_tag="VE223_02800"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase/3-isopropylmalate dehydratase large
                     subunit family protein"
                     /protein_id="HZC20551.1"
                     /translation="MNIQCESNLGMTITEKILARASNKPKVVPGDVVFTRIDKVMIHD
                     VSGPGVIKVFNEWEKKGKRLERIWDPDRVWVTEDHFVPAADIVSAQNIIALSNWTKRY
                     GIKKHYKYGLGQYGICHTLSHEEALVLPGEVYVGGDSHTNTTGALGAFSTGLGHTDIA
                     YVLMNGQIWFKVPETMMFNLTGKKPDYIMAKDIILKIIGDVGTDGANYKTMQFSGDTI
                     KQLGMDERLTLTNMTTEAGAKNGIIEPDIITDAYLRKRTNTPYFPVIGDPDARFSEVY
                     TYEIDKLEPTVAKPFSPGNVSAVRELQGTEIDKAYIGSCTGAKLQDLRLAAKLLKGKK
                     VKIRTEVLPAAQSIYTEAIREGIVNTFLDAGAVVGPPTCGACCGAHMGVLGK"
BASE COUNT          821 a          528 c          526 g          829 t
ORIGIN      
        1 caattgtgtt ggttgttgga gccgcttatt gattactttg taatattgca tttgttacag
       61 aacatctaca aatttacacc tataaatttt aacgcattca ttaaccctat agttattgca
      121 acccctaaca ttggtttcca aggcatagga ggtaattttg gagcattgag tttaatttga
      181 tggttatcaa taatgttagt aatatattct ctcactttag cattccatat cctatattct
      241 attctgtgtt ttttcaatat agactctatt tcatatatga ccggagctct tactgagcgg
      301 atatgttgaa tatattttct tgatatctct acttctgcct gaattgcgat caaaccttgt
      361 tgcatgtcca atagtctaac gtgcatttcc caaggcttag tgagtttctt tgtaaatccg
      421 ctgcctatct gagtgggctt tttgttctct aatttaactc gtctaaaacc ctctgaagtt
      481 agtgttctga ttatttcgtc tctttttatt ttaaccatta aacttaaatg atcaagctcg
      541 atttcttcac gtcggatgaa atcttgcaat cctcttacga catttatacg cctaggatat
      601 attgtcagga attcagacat ctattatagc agctatcata tgtcacaaca tggaatatta
      661 aaatgctgtg taatgaaaat ctgtttatat tgataaatga ttttcagcgt tctagccctc
      721 tgacataaat atcctgtgcg ggatctacta caatgtcacg tgaagagagt tttctatttg
      781 tagcaatcac ttttgtgtgc cgtattactg caactggtgt tgattcatcc gtctcaccca
      841 taatagccac ccccatagac gccaagctat ctgcaactgc cctaaatgta actcgcataa
      901 cattgccaaa caaatccttc tttcctcttt gatcctcaac gggttcaaat ccggcaatgg
      961 ctattgctac accggtagtg ccaattcttg taggcatcaa acggctatct gcaatgacaa
     1021 caccgacttt gatccctaaa ttaacaagaa attttagcct caagttctcc gcagatttga
     1081 aaggctcctg agggtacaat atcacgaatc ctgaaggcac atttgacttg tcaatgcctg
     1141 cattaggagc catcattcca tctttgactg caagcaagaa acctggaatt cctttataga
     1201 tataatccga ctccctcagt gttagttccg caattttgcg gtccatatga tatttaaagg
     1261 caaggttttg tgcttttttg ctagctttga ttttgttcaa atttacaact gagccctcgc
     1321 tcatagaaac gaacttgctt gataagataa ggatgtcatt ttctctaaat ctaaaaccgg
     1381 agcgagttaa actgtcaaac agattaaatc tgcttttttt aaccggtagc gatactgtca
     1441 gaatttccaa tctattgaat tattacacat aatcatcata tacttttttg gtctggattt
     1501 taattcaatg caaaaagttt taatctgcaa ataaataggt agctgttgaa tatacagtgt
     1561 gaatccaatt tgggaatgac aattaccgaa aagatacttg caagggcgtc taacaaaccc
     1621 aaagttgtac ctggagacgt agtgtttacg agaatagaca aggtaatgat acatgatgtt
     1681 tctgggcctg gtgttatcaa agtatttaat gagtgggaaa aaaaagggaa acgacttgaa
     1741 cgtatttggg atccggatag agtctgggta acagaagatc attttgtgcc agctgcagat
     1801 atagtttcgg cccagaacat aatcgcattg tctaactgga caaagagata tggtataaaa
     1861 aaacattaca aatacggttt gggtcaatat ggcatttgtc acacgttgtc ccatgaggaa
     1921 gcactggtac tcccaggtga ggtctatgtt gggggtgatt cccataccaa caccaccgga
     1981 gctttgggag cattttctac tggcctaggt catacagata tagcatatgt gcttatgaat
     2041 ggtcagattt ggtttaaagt gcccgagacc atgatgttca acctgacggg aaaaaaacca
     2101 gactacatta tggccaaaga tatcatatta aaaatcatcg gtgacgttgg aaccgatggt
     2161 gccaattata agaccatgca attttcagga gatacaataa agcaacttgg aatggacgag
     2221 cgcctgacac ttaccaatat gactacagaa gctggagcaa agaatggaat tattgaacca
     2281 gatatcatca ctgatgcata tttgcgcaaa aggacaaata caccgtattt tcctgtcata
     2341 ggagaccctg atgcaagatt ttcagaggtt tatacttatg aaatcgacaa gctagaacca
     2401 actgtagcca aacccttctc ccccggaaac gtaagtgcag taagggaatt gcagggaaca
     2461 gaaatagata aggcatatat tggttcatgt acaggcgcaa aactccaaga cttacgattg
     2521 gcagccaaac tactaaaagg caagaaagta aagataagga cagaagtgtt accagctgct
     2581 caatcaattt acacagaagc tataagggaa ggtatagtaa acacttttct ggacgcaggt
     2641 gctgtagttg gtcctcctac ctgtggagcc tgctgcggag ctcatatggg agttttaggc
     2701 aaga
//
LOCUS       DASQSJ010000138         4019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_48066, whole genome shotgun sequence.
ACCESSION   DASQSJ010000138 DASQSJ010000000
VERSION     DASQSJ010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4019
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48066"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..1369)
                     /locus_tag="VE223_02805"
     CDS             complement(107..1369)
                     /locus_tag="VE223_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HZC20552.1"
                     /translation="MHWKETLPNWYIKEFGYQPNINIGTSGHVDHGKTTLIEAITGVW
                     TSAHSEELRRGITIKVGYADAAFYKCAQCPAPLGYSTQPNCTNCGGKSELTRVVSFVD
                     SPGHESLMANMLSGAALMDGAILVIAADEKVPQPQTREHLLALQVLGIHQIVIVQNKI
                     DLTEYENALNNYEQIKDFVKGSVAEKAPIIPVSAQHKIGIDALIEAIETNIKTPSRSN
                     DSIAIMHVLRSFDINKPGVPIRQVKGGIIGGGLLQGEFNIGDEIEIRPGFLDEKRGKY
                     EPITSTIESLGTGAGLVERVRPGGLVAIGTKLDPTFVKSDSLIGSVIAKPNTLPNDIN
                     DITVETHLFETAVGTQDLVKVDPIRIKEPLRLNIGTSATLGTVINSRDNKIEIKLKKP
                     VCMILKDRVAISRRIADRWRLIGVGMTV"
     gene            complement(1488..1883)
                     /locus_tag="VE223_02810"
     CDS             complement(1488..1883)
                     /locus_tag="VE223_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S6e family ribosomal protein"
                     /protein_id="HZC20553.1"
                     /translation="MAQFKLVISDSRGKSITQELKDRAAQPLLGSKIGDIIDSSVVGI
                     SGGKMKFTGGSDKSGTPMRPDVHGGVKKYVLLSHGIGMKNIVDGNRIRKLVRGNMITE
                     EIYQLNCMLVEGSLPVKAEGPSKEAASKQ"
     gene            complement(2224..2397)
                     /locus_tag="VE223_02815"
     CDS             complement(2224..2397)
                     /locus_tag="VE223_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-domain-containing protein"
                     /protein_id="HZC20554.1"
                     /translation="MVLEAKCPTCDKRAQVNDDMSRVECKYCGLDLSYDEYIEVMKGR
                     AVTMADDFQMNLP"
     gene            complement(2525..3598)
                     /gene="amrS"
                     /locus_tag="VE223_02820"
     CDS             complement(2525..3598)
                     /gene="amrS"
                     /locus_tag="VE223_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HZC20555.1"
                     /translation="MLQNDLSGKEAELYTKLPNGRIKCTACARLCEIPSGKIGLCGIR
                     GVVDNKLQLFVYGRVIAGHIDPIEKKPVTHYRPGTDIFSIATTGCNWLCKYCQNYDIS
                     QRRKIEGNLMTPLEVVDMAATYGAQGIAYTYNEPSIFIEFAKDCGIEAHKRGIFNIFV
                     SNGYDTPESVNMMGKFLDCITVDFKGSGKQEFVRQYIGIPNANPIFDSLKEIRDKTRI
                     HTEITDLIVPKVGDDLEAARKLCRFIYDELGPDTPIHFLRFHPDYKMMEFNDTPIETL
                     EKHHTIAKEEGLRYAYVGNVPGHPLEHTYCPECKSIAIQRYGFSIISWNLDDYNCCKK
                     CGYPLPIVGKLAKNTRNRFQFIP"
     gene            complement(3754..3993)
                     /locus_tag="VE223_02825"
     CDS             complement(3754..3993)
                     /locus_tag="VE223_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20556.1"
                     /translation="MLTTKTIKSIKIQRKDRDQESLWNEAPSPGREAMIAVIDDESKL
                     IRSLKAENEEEYDKLHFLKHPRKYRLLKYGIVKSK"
BASE COUNT         1109 a          839 c          658 g         1413 t
ORIGIN      
        1 attaaaaaat ccaatttacc aaaataggct tcaattttgc ctatctgttt tattggtttg
       61 gaaaccagga ccattaagaa gctagtatca catataatgt ccatttttat actgtcatac
      121 ctacaccaat tagcctccat ctatctgcaa ttcttcggct gatcgcaact cgatccttaa
      181 gtatcataca tactggtttc ttcaatttta tttctatctt gttatctctt gaattgataa
      241 ctgttccaag agtggcagaa gtgccaatat tcaacctaag tggttccttt atccttatag
      301 gatcaacctt gactagatct tgtgtaccga ctgctgtttc gaaaagatga gtttctactg
      361 ttatatcatt gatatcgttt ggcaatgtat taggctttgc aataaccgag ccaataagag
      421 aatcactctt tacaaaggtt ggatctaact ttgtgccaat agcaacgaga cctccgggcc
      481 taactctttc tactagacct gctcctgttc caaggctttc aatggtcgaa gtgattggtt
      541 catatttgcc tcttttttca tctaaaaagc ctggacgaat ttcgatttca tctcctatgt
      601 taaattcgcc ctgaagcagg ccacctccaa ttattcctcc ttttacttgc cttatgggaa
      661 cacctggctt gttgatgtca aacgatctta aaacatgcat tatggctatt gagtcattgc
      721 ttctgcttgg cgtcttaata ttggtttcaa ttgcttcgat aagggcgtct atccctatct
      781 tgtgctgagc tgaaactgga atgattggtg ccttttctgc tacacttcct tttacaaaat
      841 ccttgatctg ctcgtaattg ttaagagcat tttcatattc tgttaaatca atcttgtttt
      901 gaacaattac tatttgatga attccaagca cttgcagtgc tagcaggtgc tctctagttt
      961 gtggttgtgg aaccttttca tctgcagcaa ttactaaaat agcaccgtcc atcaaagccg
     1021 cgccagaaag catatttgcc ataaggctct catgtccggg agagtcgaca aagcttacca
     1081 ctctagttaa ctcacttttt cctccgcaat tcgtgcagtt tggttgggta gaatatccta
     1141 gcggagctgg acattgtgca catttgtaga aagctgcgtc cgcataacca acttttattg
     1201 tgatacctct tctcaattct tcactatgcg cacttgtcca tactccagtt atagcttcta
     1261 ttaatgtagt tttgccatgg tctacatgac ctgacgtacc aatgttaata tttggttggt
     1321 agccaaattc cttgatatac caattaggta atgtttcttt ccaatgcaac ggtactcgta
     1381 aaattctgga gggatattaa cgtattacat ttgaaactct tattacaaac atactagatt
     1441 gccgaaagcc aaataataat acaaaattta atctttttct ttattcccta ttgtttacta
     1501 gcagcttctt tgcttggacc ttctgccttg acaggcaagc tgccttcaac taacatacaa
     1561 ttcagttggt aaatttcttc tgttatcatg tttcctctta ctaactttct tattctattt
     1621 ccatctacga tgtttttcat acctattcca tgtgaaagca gtacatattt ttttacgcca
     1681 ccatggacat ctggacgcat tggggtacct gacttgtcac ttcctcctgt aaacttcatt
     1741 ttgccgcctg aaataccgac aactgaagaa tcaatgatgt ctccaatctt cgatcccagc
     1801 aatggctggg ctgctctgtc ttttaattcc tgagtaatac ttttacctct agagtcagat
     1861 atgacaagtt tgaactgagc caacttaaaa acaagcgtgg atatggtatt aattaacctt
     1921 tgcaccattg tagataacga attgaaaggt caattgaatt tctaacgcta gaacgtaaag
     1981 aatcaaatga aacatatatt ctattggttt tacaatatac aattatgaaa ggaaggttac
     2041 aacgtaacga cgtcgagtgt cctatatgcg gattcactat gacatatatt caagcatgcc
     2101 atgttcgctg tcagaactgc ggcgctgagc taacgtgctc agacaaagga ttcttttggt
     2161 agaatatcag aattttcaag cgactttcag aattcggtag ataaaattat tatattaaca
     2221 ttgctaaggt aagttcattt gaaagtcatc agccatagta acagccctgc ctttcattac
     2281 ctcgatatat tcatcgtatg aaagatctaa gccacaatat ttgcactcta ctctgctcat
     2341 atcgtcgtta acttgtgccc ttttatcaca tgttggacac tttgcctcaa gaaccataaa
     2401 ttgtcttaac cggtatatct atatattact atcttgattt cctaattatc tgtttaaggc
     2461 tctcttcgcc agaacactca attctgagta atactttatg tcaattagcg ctaattttat
     2521 gtacttaagg aataaattga aatctgtttc tagtattctt ggcaagtttc cctactatag
     2581 ggagcggata gccgcatttt ttacaacaat tataatcatc tagattccac gaaattatac
     2641 tgaatccata acgttgtata gcaatgctct tacattctgg acaatatgta tgttctaatg
     2701 ggtgtcccgg tacattacca acatatgcgt atcttaatcc ttcttctttt gcaatagtat
     2761 gatgcttttc aagagtttca atcggtgtat cattaaattc catcattttg taatccggat
     2821 gaaatcttaa aaagtgaatt ggagtatctg gccctaattc gtcataaata aacctacata
     2881 attttcttgc agcttccaag tcatcaccca ctttgggaac aataagatca gtaatttcag
     2941 tatgtatcct tgtcttatcc ctgatctcct taagtgagtc gaaaattgga ttggcgtttg
     3001 gaattccaat gtattgtcga acaaattcct gtttgccgct tcccttaaaa tcgactgtta
     3061 tgcaatctag aaatttgccc atcatattaa ctgattctgg agtatcatag ccatttgaaa
     3121 caaagatatt gaaaatacct ctcttgtgag cttctatccc acagtctttt gcaaattcta
     3181 taaagatcga gggttcatta taagtgtagg caattccttg agcgccataa gttgcagcca
     3241 tatctacaac ctccaagggg gtcataaggt ttccttctat tttgcgtcgc tgagaaatat
     3301 cataattttg acaatacttg caaagccaat tacaccccgt tgttgctatt gagaaaatat
     3361 ccgtaccagg tctgtaatga gtcacaggtt ttttttctat cggatcgata tgccccgcaa
     3421 taaccctgcc atagacaaat aattgtaatt tattatccac tactcctctg attccgcata
     3481 gtccaatttt accagatgga atttcacaca agcgagcgca ggcagtacac tttattctac
     3541 catttggcag ctttgtgtaa agctctgctt ctttacctga taaatcgttt tgtagcaagc
     3601 tctgttttat ataggcggtc taatcttata aaccattaga agattactga attatttgtt
     3661 gcacagtata gagctaaaat tactatatct ttttttgtat gcattcttta ttttgacctg
     3721 aatctttttt aaaagaaacg atctttttag aaattactta ctctttacta taccatactt
     3781 tagcagtcta tatttccttg gatgtttcaa aaaatgcaac ttgtcgtact cctcttcgtt
     3841 ttcagctttc aggcttctga taagttttga ttcgtcgtca attacagcaa tcatcgcttc
     3901 cctgccaggc gatggggctt cattccacag agattcttgg tctctatctt ttctttgtat
     3961 ctttattgac tttattgtct tcgttgtcag caatttttct ggataattac cttatgcac
//
LOCUS       DASQSJ010000139         3479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_247360, whole genome shotgun sequence.
ACCESSION   DASQSJ010000139 DASQSJ010000000
VERSION     DASQSJ010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247360"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            707..2392
                     /gene="pyrG"
                     /locus_tag="VE223_02830"
     CDS             707..2392
                     /gene="pyrG"
                     /locus_tag="VE223_02830"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HZC20557.1"
                     /translation="MQSKVNIEGNNNNKTKFIFITGGVMSGLGKGVITSSTAKLLQLL
                     GLKVSCIKIDPYVNYDAGTMNPIAHGEVFVTEDGGECDMDIGNYERFLDIAMTKDHNI
                     TTGRVYLDVIQSEREGKYLGQCVQIIPHITDAIKNRLRKVANDEGLDIVVVECGGTVG
                     DIESLPFLEALRQIKLEDGHSNTLFIHVTLAPVLDVVGEQKTKPTQHSVQELRRIGIQ
                     PDILAVRCKTPLTFDVRRKISLFASVEEKCVISCHDAPSIYKVPEVLESQGMIKVIAE
                     NLSLKNCHLQWHDWKSIAKSFYDHNGFVKIAVVGKYVTLPDSYVSIYHALSHASAHIG
                     RKVEVEWIDSEEFEQNRRGVGEEEPKNSSSNLSFLRKFDGVLVPGGFGRRGSEGIINV
                     ANFSRQENIPYLGICFGFQLAIIAFARNACNLQHASSTELDPNTKDPVIVFMPEQRSM
                     HNMGGTMRLGKHKITVIPHTNASRIYGGNKTNVIYRRHRHRYEFNQDYRKLIENRGMV
                     LSGHSDNGRRIEMLEIAKHKFYFAVQYHSEFNSRPGIPEPAFEAFIKAAASTS"
     gene            complement(2406..3413)
                     /locus_tag="VE223_02835"
     CDS             complement(2406..3413)
                     /locus_tag="VE223_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HZC20558.1"
                     /translation="MKIALSGTGSRENGVFLSQMKKTLDLLDIDTQMMQDSDYKLAKE
                     VDLVLVTGGDRGILDYFHKVVTDSAPVLGVYESDSTGFLAQIEIKDLESAILRLKRSN
                     YEVDEVFRLAVKVDGKEVEPVLNDVAIFPSKSATLMEHILRIDGKDVWHDNSDGVIIS
                     TPTGSTAYSMSAGGPMVLQKSSVFIVVSVNSVDNTRRPLVVPNDTKLEIADIMGRYHC
                     EVILDGGSRLPIKKMLECYRHEFPARLVRLIGDSSAISIIAKKVKLAKDLLSVPPSAK
                     LILKTLEYEGALTQKDLSTKTMLPERTVRLSLSHLLNLGYVKKKTSLRDARQKIYELR
                     I"
BASE COUNT         1144 a          578 c          657 g         1100 t
ORIGIN      
        1 agacatttta cttcaccttc gcaggaaggg aaaggtcttc aaaatatctt ctatgcatta
       61 tattaccatt ttagactatc tataagaaag acattacaag atttgtctct attcataaag
      121 agaaacccat ttccatttgg aatgtgattc aacattacac accagaaaaa tatttggtag
      181 gaaaagaaga atttatgaat ttataattga ctaaactcta aagtaggcga tgaatttgtt
      241 tgattgtaga tttcaactga tccaagagat aataagattc ttagaataca tgtctcatat
      301 caaagaagta tgcagattgc agggcaatta atgatttata atgagaaaat gtggaacatc
      361 atttttactg atagtgtgtg gtatattcag acttgcaaac tagaacataa tatattcttc
      421 ataatataat aaaattatag tttgggagaa caattcaata tacaataaaa gatagaacac
      481 aaatgtttcg atggttattt ccatgcataa aggaaacgag ttggaatcta gggcacatcg
      541 tcaattggtc attatctttg ttcatataca taattaaaat gattactcac tatgttgtta
      601 ggtgaagatc ttctaaatct gcaataatat acatatcctt agttctttac tgaatttgga
      661 atttctacaa aaaaaggaat aaaagggtga ccaactaaaa cccaatgtgc agtcgaaagt
      721 taacatagaa ggcaataata acaacaagac aaagttcatt tttattactg gtggtgtaat
      781 gtcaggactc ggcaaaggcg taataacttc atctactgcc aaattattac aattgctggg
      841 tttgaaggtt tcatgtatta agattgatcc gtatgtaaac tatgatgctg gaacaatgaa
      901 tcctattgca catggtgaag tttttgttac agaggatggt ggtgagtgcg atatggatat
      961 tggaaattat gaacgttttc ttgatattgc aatgacaaaa gatcataaca ttacaactgg
     1021 tagggtatat ttggatgtaa ttcaatccga aagagaagga aaatacctag gtcaatgtgt
     1081 tcagattatt ccccatatta cagatgctat aaaaaacaga ttacggaaag ttgccaatga
     1141 tgaaggatta gatattgtgg tcgtggaatg tggcggcact gttggtgaca tagaaagtct
     1201 tccatttctt gaagcgttaa gacagataaa acttgaagat ggtcactcta atacattatt
     1261 tattcacgtt acgctcgctc ctgtactaga cgttgtaggt gaacagaaga caaaaccaac
     1321 tcagcacagt gtccaagagc ttcgaagaat tggaattcaa cctgacatct tggctgtaag
     1381 atgtaaaaca cctctaactt tcgatgtaag acgtaaaatt tcgttatttg caagcgtgga
     1441 agaaaagtgt gttatttcat gtcatgatgc cccgtctatt tacaaagttc cagaagtact
     1501 ggagagccag ggaatgatca aggttatagc cgaaaatttg tcattaaaga attgccattt
     1561 gcaatggcat gattggaagt caattgcgaa atcattttat gatcataatg gatttgtaaa
     1621 aattgctgtg gtgggaaaat atgttactct tcctgatagc tatgttagta tctatcacgc
     1681 gctttcacat gccagtgcgc atattggaag aaaagtagag gttgaatgga ttgattcaga
     1741 agaatttgag cagaatcgaa gaggggtagg tgaagaagaa ccaaagaata gtagtagtaa
     1801 tctttcgttt cttaggaaat ttgatggtgt gcttgttccg ggaggatttg gaagaagggg
     1861 aagtgaagga ataataaatg tagccaattt cagtagacaa gaaaatatcc catatttagg
     1921 aatatgtttc ggattccaat tagcgattat agcatttgca agaaatgcat gtaatctaca
     1981 acatgccagt tctacagaac ttgatccaaa tacaaaagat ccggtaatag tatttatgcc
     2041 tgaacagagg tcaatgcata atatgggcgg aactatgcga ctaggcaaac acaagattac
     2101 ggttattccc catacaaatg cctcaagaat atatggagga aataaaacaa atgtaatata
     2161 tcgaagacat agacacagat atgaatttaa tcaagattat cgtaagctta tagaaaatcg
     2221 tggcatggtt ttgtccggcc attctgataa tggcaggcga attgaaatgc tagagattgc
     2281 aaaacacaag ttctactttg cagtacaata tcattctgag tttaacagta ggccgggcat
     2341 acccgaacca gcttttgagg cctttataaa ggcagctgct tctacttctt gaatattatt
     2401 gatttttaaa tcctaagctc ataaatcttt tgtcgtgcgt cacgtagtga tgtctttttc
     2461 tttacataac ctagattgag caaatgacta agtgagagcc taacagttct ttctggaagc
     2521 attgtttttg tggaaaggtc tttttgagtt aatgcacctt cgtattctag agttttcaaa
     2581 atcagttttg cacttggcgg tacgctcagc aaatcttttg ccaattttac cttctttgct
     2641 ataattgata tagcagaaga atccccaatt aacctgacaa gcctagctgg aaattcatgt
     2701 ctgtagcatt caagcatttt ttttattggt agccgagatc cgccatcaag aatgacttcg
     2761 cagtggtatc tacccataat atctgcgatt tctagtttgg tgtcattagg cactactaag
     2821 ggtctgcgtg tgttatccac tgaattcacc gataccacaa taaatacaga agatttctgt
     2881 aataccattg ggccacctgc agacattgag tatgcagttg atcctgtagg tgtagatatt
     2941 ataacaccat cactgttatc atgccataca tccttgccat ctattctaag tatgtgttcc
     3001 attaacgttg cacttttact tgggaatatt gcaacatcat tcagcacagg ctcaacctct
     3061 tttccatcta ccttcactgc taagcgaaat acctcgtcga cttcgtaatt acttcttttt
     3121 aaccttaaaa ttgccgattc tagatctttt atctctattt gtgccaaaaa tccggtagaa
     3181 tctgattcat aaactcccag aaccggtgca gaatcagtta caactttgtg aaaataatca
     3241 agtattcctc tatcgccacc agttactaaa acaagatcga cttcttttgc taatttatag
     3301 tcactatctt gcatcatttg tgtatcaata tccaatagat ctagcgtctt tttcatctga
     3361 gataagaata ctccattttc tctagagcct gtacccgaaa gggctatttt catctctctt
     3421 gattacatgt aaagagatta tttatttaat taatgtagaa gaaatatatt gtttatata
//
LOCUS       DASQSJ010000140         5108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_287097, whole genome shotgun sequence.
ACCESSION   DASQSJ010000140 DASQSJ010000000
VERSION     DASQSJ010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5108
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287097"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VE223_02840"
     CDS             <1..319
                     /locus_tag="VE223_02840"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HZC20559.1"
                     /translation="ESAEVRRQERLKSVVNETENVMMKAEKEFQEAKQDGIIENAEII
                     SYNALIEIAKKVNANDAIPILERSLKEEESMAKSIMTTLPELLNKLWPYIESSAGNRP
                     VNA"
     gene            complement(1088..1993)
                     /locus_tag="VE223_02845"
     CDS             complement(1088..1993)
                     /locus_tag="VE223_02845"
                     /inference="COORDINATES: protein motif:HMM:NF012976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intradiol ring-cleavage dioxygenase"
                     /protein_id="HZC20560.1"
                     /translation="MLLDRKTILLFLQLSLTVLVLLGAGLAPIGSSAQLIPSGSSSAS
                     PLSNRGTSSPFGPGPTGFPPISPELSAAQKSASTNKTCTLTPSLIEYEGTPQQTEGPY
                     FVDGMPNRSDIRSDPSDGSVQQGIPLHLIIHVYGLNENGSCAPIKGAKVDIWHANSQG
                     IYSDIADQGTIGKKFLRGYQLTDNKGTAKFTTIYPGWYQGRAIHIHDKVRTFNGSEKT
                     LEWTSQLYFDNSINEQVHKQPPYSKHGPPDMTNEQDGIYAGPSTDGLIQSNTGKHLMV
                     NLTKAQGQSYIGVFNIVLNATQHNA"
     gene            complement(2306..2731)
                     /locus_tag="VE223_02850"
     CDS             complement(2306..2731)
                     /locus_tag="VE223_02850"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZC20561.1"
                     /translation="MPTIVHFEIPADDVERAKKFYSNLFGWKMEKWPGTDGKDNSYSS
                     SNMEYWIISTTDSKGNKASIGGGMMKRQDHQHHQHITNFIDVGSVDEYSSKIEKLGGR
                     VVVSKMAVPGMGYFAVCHDTENNSFGIWESNEGARVQSK"
     gene            complement(3252..4964)
                     /locus_tag="VE223_02855"
     CDS             complement(3252..4964)
                     /locus_tag="VE223_02855"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HZC20562.1"
                     /translation="MEDSKYNFLWGIATSSYQVEGGISNNDWDYFTRSDAIKKRISSL
                     TKPSIFYKGRTQIHLQPAGEAVLFWQPEYYESDFQLAKSLGMNAFRISLEWARIQPRK
                     DQWNREALDHYKKMLRSMRKVGLTPIVTLNHFTLPLWVLTPPAQIMKNIVQQILPSPL
                     RDAPIGEPPSTDPYWNSLRGWENDRTVEEFVKFTEMMVVELKDLVDYWITINEPVASI
                     VGLGYIAALSPPGFFLDGKRAKLALHNLIEAHIQAYDKITELDDVDADGDGLPKRVGF
                     GHLMTYIIPAKPNSIFGTRISNKNNNDQAAENASYFLNDYFLNAVIKGEEDVNYLNTL
                     KIHDKTSKDFIIHDKWKNKVDFIGLNYYRRIHVYHSIVVALSSARFIGGAFINDLNEK
                     TRSSKSSSDSYGMLNDLGWEIYPQGIYELVMRLNNKYAKPIFVTENGIADKHDKYRGQ
                     FIVAHIQQMKRAIDNGANVIGYLYWSMMDNYEWQESYSPEAKFGLFKVDKDTENSRTD
                     REQHLKRQVTKGAEALKLIIKESVKQDKTITIADSAISRAKTDYGIFTADGSNIVISS
                     RKKL"
BASE COUNT         1559 a          973 c          909 g         1667 t
ORIGIN      
        1 tgaatcagcg gaagtgcgtc gccaagaaag attgaagtct gttgtaaatg agacagagaa
       61 tgtcatgatg aaagctgaaa aggagttcca agaagctaaa caggatggaa taatagaaaa
      121 cgcagagatc atctcgtata atgcattaat tgaaatagca aagaaagtaa atgcaaatga
      181 tgccattcca atactagaac ggagtctaaa agaagaagaa tctatggcaa aatcaattat
      241 gacaacctta cccgaattac ttaacaaatt gtggccatat atagaatctt cagcaggtaa
      301 tagacctgtt aatgcctaaa ctagagatat acgaaaaatt tacaagtcgt taatatggat
      361 aattttgata ataaaagtaa aaaattagct ggcctctttt atccataggt tgcgctactt
      421 taccattacc attcatgcca tcatcggtgc aattcacaaa gatatacata agttccagat
      481 ttttgaaatg ttactgtaaa tgtattagaa gaaccgggat ataccttttc ttgtgttttt
      541 ggaacaagcc atcctgattt tatatattgt ttattaccca atatagtaaa gatagcatta
      601 ggaggagcaa ttttcgtatt tcctgttgag tccatgatgc tggattgtaa gatcttgcgt
      661 tactgacaat tactgtattc attccatctg taccaggaat catatttggc ttactgttgg
      721 acctaggagg tattgcactg aacttggtcg agctcgggat agcaaatgga acaagtgttg
      781 cgacaataac ttagtattat aacttgggct ctttatgaca tattacttct actattttat
      841 ctggatggct ttgacattgt ttgtaatctg gatcggttgg agaacagtca tatttgtttg
      901 aatactttgt actgtggatc taatgttaaa gtaaaatgaa gatcgccatc ttcatcctcc
      961 actgttcctc ctcctggctt gcggtacact tccacagttt cacattcgtt ttcggtatcc
     1021 agcctcttag aatcgtatat acaacatcat cagctatcaa gacatcagtc aaatccctat
     1081 ttttgaatta cgcattatgt tgagtagcat ttaatacaat attaaatacg ccgatatatg
     1141 actgtccttg tgctttagtt agattgacca ttagatgctt tccagtgttg ctctgaatta
     1201 gcccatcagt tgatggtcct gcataaatgc catcttgttc attagtcatg tcaggaggtc
     1261 catgtttgct gtatggtggc tgcttatgga cttgctcatt gatagaattg tcaaagtaaa
     1321 gctgtgaggt ccattctaaa gttttctctg atccgttaaa tgtacgaacc ttgtcatgta
     1381 tatgaatggc tctgccctga taccaacctg gatatattgt tgtaaattta gctgtccctt
     1441 tattatctgt cagttgatat cctctgagga atttctttcc tatagtacct tggtcagcaa
     1501 tatcagaata gatgccctgc gaattagcat gccagatatc tactttggct cctttgatag
     1561 gagcgcatga accattttca ttcaaaccat aaacatgaat tataagatgc aatggaatgc
     1621 cttgctgtac cgacccgtca gaaggatctg atcttatatc agatctgtta ggcataccat
     1681 caacaaagta tggaccttct gtctgctgcg gagtaccttc atactcgatt agcgacggag
     1741 taagtgtaca tgttttgttt gttgatgcac ttttttgagc tgcagacaat tcaggagata
     1801 ttggcggaaa tcctgtagga ccgggaccga agggagaaga tgtaccccgg ttggataatg
     1861 gggatgcact gctactacca cttggtatta attgagctga agatccaata ggtgctaacc
     1921 cagctccaag caaaaccaaa actgtcaaag acaactgaag gaatagtaaa atagttttcc
     1981 tgtctaatag catggacttg gtacttttct catcagctgt aataatcatc aacattgcta
     2041 ctggtcaata tgttatttaa aatgaacaac aactcgacac aacatgataa acgcctaaag
     2101 gatgttagca gggaactaaa gttatttctt ccaatctatg ctaccacttg gagaaaagac
     2161 gcttgcatta ctaatacaat tacctccatc attaaagata actgaaggaa tagggaatct
     2221 cagacaatac atagcacctg aattagatag cagaacttcc atcagatacg caatagaagt
     2281 tagagatagg acacagtatc aagatttact tactctgaac ccttgcgccc tcattagatt
     2341 cccaaatacc aaaactatta ttctctgtgt cgtgacaaac tgcaaaatat cccatacctg
     2401 gtactgccat cttagaaaca actactctac cacctaactt ttctatctta gacgaatatt
     2461 catctactga acctacatct ataaaattag tgatatgttg atgatgctga tgatcctgtc
     2521 ttttcatcat tcctcctcct atagaggctt tatttccttt gctatctgta gtgcttatga
     2581 tccagtattc catgttagaa gacgaataac tgttgtcctt accgtctgtt ccaggccatt
     2641 tttccatttt ccatccaaac aaattgctat agaatttctt tgctctttca acatcatctg
     2701 caggtatttc aaaatgaact atggttggca tattgtattc taaaaattaa ggtactttaa
     2761 aaacaacaaa ggtgatagtt tgtaaactga ttcgtcaaac gcttcttggt atactaatgc
     2821 tttcatgcta aatcaaagac tgcaggtata acatggcttt gggagcgtgg gccaattgat
     2881 tagccaattt atatttggag gatgctatag ttctaggtca tattatatat gatatccaaa
     2941 atatgatagt ataactagaa tccacaaaac atacatataa tgatcttgac attaacccta
     3001 tgtttaccgt catcattccc aggccttggt gtaagggaga gatccttatg tagtgcattg
     3061 agtggaacga acaggaaaaa tgttgcggta aatccatcaa ctaatttgtt tgctattgtc
     3121 aaataaagtc gcaatagctg ccaaatctaa aggtaaattc ttctcaggta aatcattgtt
     3181 cgtgatctta acttccaaca gcaagacgag atgtggacga aatcgtcagg gcagctgcag
     3241 aagaagatga cctacaattt tttacgtgag ctaataacta tgtttgaacc atcagctgta
     3301 aatattccat aatcagtctt tgctcttgat atagcagaat ctgcaatcgt tatagttttg
     3361 tcttgcttaa cagattcttt tattataagc ttgagtgcct cagcaccttt ggttacttgt
     3421 cttttaagat gctgctcccg atctgttcga ctattttcgg tatccttgtc aactttaaat
     3481 aatccaaact ttgcttcagg actataggat tcttgccatt cataattatc catcatagac
     3541 caatataaat atcctataac atttgcacca ttatcgattg ctcttttcat ttgctgaata
     3601 tgtgctacaa taaactgacc acggtatttg tcatgcttat cagcaatacc attttcggta
     3661 acaaaaattg gtttagcgta tttgttgttt aacctcataa ctaactcgta gattccctga
     3721 ggataaatct cccatcctag atcattaagc atgccatacg aatcagatga agatttactg
     3781 ctcctggtct tttcattcaa gtcatttatg aatgcacctc caataaatct ggctgaagat
     3841 agcgcaacta caatactatg gtatacatgt atacgacggt aatagttaag acctatgaaa
     3901 tcaactttat ttttccactt atcatgaatg ataaagtcct tactggtttt atcatgtatt
     3961 ttgagagtat tcaaataatt tacatcctct tcacccttga tcacggcgtt aagaaagtaa
     4021 tcattcaaaa aataagaggc attctctgca gcttgatcat tattattctt atttgatatt
     4081 cttgttccga agatactgtt aggtttggct ggaatgatat atgtcattaa atgtccaaaa
     4141 ccaactcttt ttggaaggcc atctccatct gcatcaacat cgtctaattc tgtgattttg
     4201 tcgtatgctt gaatatgagc ttcaataaga ttatgcaatg ctagtttagc tcttttacca
     4261 tcaagaaaaa aaccaggagg agataatgca gcaatatatc ctaagcctac aatggaagct
     4321 acaggttcat ttattgtaat ccaataatca actaggtctt ttaattctac aaccatcatt
     4381 tcagtaaatt tgacgaattc ctcaactgtt cgatcgtttt cccatcctct taaagaattc
     4441 caatatggat ctgtggatgg tggttctcct ataggagcat ctcttagtgg tgagggtagt
     4501 atttgttgta ctatattttt cataatttgg gccgggggag tcaataccca cagcggtaga
     4561 gtaaaatgat tcaatgtcac aataggtgtt aaaccaacct ttcgcatgga tctcaacatt
     4621 tttttataat gatccaatgc ctctcggttc cattgatctt ttctgggttg tatgcgagcc
     4681 cactctaggc taattctaaa tgcattcata cctagacttt tggctaactg aaagtcgctt
     4741 tcataatatt ctggttgcca gaacaagaca gcttcgccgg ctggttgcaa atgaatttgg
     4801 gttctacctt tgtaaaaaat gcttggcttt gtcaacgaag atatcctttt cttaatagca
     4861 tcagagcggg taaagtaatc ccaatcgttg tttgaaatac ctccttctac ttgataagaa
     4921 gaagtagcta taccccacaa aaagttgtat ttagaatctt ccatttcgat tttattatta
     4981 ttaatgtaat ctaatcatac aacacatcga tttttatagt tataggtagt agatgtatag
     5041 aagtgaccaa tcaacaagag cagcggttgt ttccaatcaa cagtgctacg tcggttaatc
     5101 ctaatgca
//
LOCUS       DASQSJ010000141         2053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_495993, whole genome shotgun sequence.
ACCESSION   DASQSJ010000141 DASQSJ010000000
VERSION     DASQSJ010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_495993"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..723)
                     /locus_tag="VE223_02860"
     CDS             complement(<1..723)
                     /locus_tag="VE223_02860"
                     /inference="COORDINATES: protein motif:HMM:TIGR01613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid primase, P4 family"
                     /protein_id="HZC20563.1"
                     /translation="MSKHRLLTIEESKEVLYYRDGVYVPGGEILVEKEAENMYRYHLA
                     NKHLPEIKGHIMRSTYRTHEEIDSDLNIINLKNGLYNIRAGEFREHSPDYLSINQIPV
                     IYNPKAKPKMFGKFLHEVLYPSEIRTAIELMAYTFYCDNPFEIIVILFGYGANGKSVF
                     TGLLTALHGTKRISNVPLSSMLEDRFALSDLEGKSVNIDTELANTTIRDTSVLKKLTG
                     RQPTRIQRKNQRAYDVRLYAKLW"
     gene            complement(916..1140)
                     /locus_tag="VE223_02865"
     CDS             complement(916..1140)
                     /locus_tag="VE223_02865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20564.1"
                     /translation="MEFIQHINQICIKYGLDYPSKSTIIDDRLKTITKSLKLKKEDSS
                     IRIPKGTRHLTLISFADSLLFNHLGKKKGQ"
     gene            complement(1187..1720)
                     /locus_tag="VE223_02870"
     CDS             complement(1187..1720)
                     /locus_tag="VE223_02870"
                     /inference="COORDINATES: protein motif:HMM:NF020811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA primase/polymerase"
                     /protein_id="HZC20565.1"
                     /translation="MTITNTSNVLPPSNDDYNGWADFWHYKIGVNVIPADTKNKKPIV
                     EWAQYQDNPISEWQHEKWKSENAFSRGIAVIAGKVWHRQDKKDYHLIELDADKKEAIT
                     EICTRDGRTISLQDMAQRTLVEQHADCLDRAHFYFYSPIPFPKKSADSVLGLEVKGSG
                     DHGLMFCSPSMQRWLSL"
     gene            complement(1717..1956)
                     /locus_tag="VE223_02875"
     CDS             complement(1717..1956)
                     /locus_tag="VE223_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20566.1"
                     /translation="MADCENDDDNVTCLMPVVKINRRQFRRQKYHFDEEGGRCHDCQV
                     RHGRIHHAFCDVGKCPVCDDQFISCNCKDKAIPIL"
BASE COUNT          547 a          422 c          351 g          733 t
ORIGIN      
        1 ccaaagtttt gcatacaatc gcacatcata agcacgctga tttttccttt ggattctcgt
       61 aggttgtcgg ccagtaagct tcttcaatac agatgtatca cgaatggtgg tgttagctaa
      121 ttcagtatct atattgaccg atttcccttc cagatctgat aatgcaaacc tatcttcaag
      181 catggatgat agagggacat tgctaattct ttttgttcca tgaagagcag tcaataatcc
      241 agtaaataca cttttgccgt tagccccata tccaaacaat atcactataa tttcaaatgg
      301 attatcgcag taaaatgtat aagccatcaa ctcaattgca gttctgattt ctgaggggta
      361 taatacctca tgtaagaatt tgccaaacat tttcggcttg gctttaggat tgtatatcac
      421 aggtatctgg ttaatcgata ggtagtctgg tgaatgctct ctaaattccc cagctcgtat
      481 attatataag ccattcttca gatttatgat gttgagatct gaatcaatct cctcgtgagt
      541 acgataagta ctacgcataa tgtggccttt tatttcaggt agatgcttat ttgcaagatg
      601 atatctatac atgttctcag cctccttttc aactaaaatc tctcctcctg gaacgtatac
      661 accatctcta taatacaaca cctctttact ttcttcaatc gtcaaaagtc ggtgtttgct
      721 cataatggtt ttactagctt cttcaattag agaaaccttg tcgactttct cattcttgtc
      781 ctcttcatct tgttcttctt taattttagt aacgaattca agagcacttt tccagatacc
      841 atctatctcc tgttctggta atggttctgg ctcacaaagg gtgttgttaa tttggaaaaa
      901 gaaatcccta agccattatt gtcctttttt cttacctaaa tggttgaaca ggagagagtc
      961 tgcaaatgaa attagtgtta aatgtcttgt acctttggga atccttatgc tagaatcttc
     1021 tttttttagt ttcagactct tggttatggt ttttaaccta tcgtctataa ttgtggattt
     1081 ggatgggtaa tcaagtccat atttaataca tatctgattg atatgctgta taaactccat
     1141 tgcttgtatt gtgtttaagg taaccggttc agttttgcct atgatttcat aatgataacc
     1201 atctttgcat agaaggagag cagaacataa gtccatggtc tcctgatccc ttaacttcga
     1261 gacctaatac tgaatctgca cttttcttag gaaatggtat tggagaataa aaataaaagt
     1321 gagctctatc aagacaatct gcatgctgct ctacaagagt tctttgagcc atatcctgca
     1381 atgaaattgt ccttccatct ctagtgcaaa tttcggtgat tgcttctttt ttatctgcat
     1441 ctaactctat caaatgataa tcttttttgt cttgtctgtg ccatacttta cctgcgataa
     1501 ctgctatccc tcttgagaat gcgttctctg acttccattt ctcatgctgc cattcagaga
     1561 taggattatc ctgatattga gcccattcga caataggttt tttattttta gtatctgcag
     1621 gtatgacgtt tactccaatt ttatagtgcc aaaagtccgc ccagccattg taatcatcat
     1681 tagatggtgg gaggacatta ctagtgtttg ttatagtcat aaaatcggaa tcgccttatc
     1741 cttacagttg cagctaatga actgatcatc acacactggg cacttcccaa cgtcacaaaa
     1801 tgcatggtgt atcctgccat gccttacttg acagtcatga caccttccac cttcttcgtc
     1861 aaaatgatac ttttgtctcc taaattgacg cctatttatt tttactacgg gcattaaaca
     1921 tgtgacatta tcatcatcat tttcgcagtc agccatgtct tggtggcatg ctttgcatat
     1981 gtgatgttgc ggccaagtcc acatttttac tggttcacct ctttttcagg atagacgcat
     2041 tgtctatgca ttt
//
LOCUS       DASQSJ010000142         2702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_496157, whole genome shotgun sequence.
ACCESSION   DASQSJ010000142 DASQSJ010000000
VERSION     DASQSJ010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496157"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..1449)
                     /locus_tag="VE223_02880"
     CDS             complement(43..1449)
                     /locus_tag="VE223_02880"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HZC20567.1"
                     /translation="MLFNKRLLIVGFSSIALGIGIAIYFLDPQKQPLQQEQIPTLKDP
                     NSNLNLKLITSGLSSPTSMSFIDNNNLLILEKSGHVRLISNGILQKQPILTVSVNTTA
                     ERGLLGIATLGLRDSNSNDSGERNRNTKGGNFTEVAQSEIVNNKKTKTTVATKNTNTT
                     NSKVFLYFTESKHGLPLRNRIYRYDWDPHKHLLSNQTLILDLPAIPGPYHNGGKLVLG
                     PDNYLYAVIGNLNTGDGVLQNNKHGKKPDDTSVILRINPNDGSPLAPDNNPFSSNGNN
                     SIMLSKYYAYGIRNSFGITFDPITGYLWDTENGEANYDEVNLVKPGFNSGWYQVMGPI
                     SRSNVTQRDLVNFKGSHYSDPVFSWLNSIGVTDIEFLKSSKLGEKYAYNIFVGDIDNG
                     NLYYFEVNKTRTGLKFDSNTQPGLTDLVADNKDEVSEITFGTGFDGITDIKTGPDGLL
                     YILSYGHGSLYRIAPVQP"
     gene            1881..2477
                     /locus_tag="VE223_02885"
     CDS             1881..2477
                     /locus_tag="VE223_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20568.1"
                     /translation="MSSRKEQRSTGQAGETTEYNTTTTTSTTSPTEHNAQYRQSVNRA
                     LDETKDNIRRSTDEARKEIPRYTEAVNEYQEQTIRAAREIADNYIESQKEIINSLQSA
                     WLPQVETANRLFTASWISPRHVVDNYARVVSSLADNTVTATRLVNNAMFANMEAFKTS
                     IQNARDNVKEFSRIGVNSVKTFEQISRDTTATTTTFSH"
BASE COUNT          900 a          520 c          456 g          826 t
ORIGIN      
        1 agatattata atcgagatta caataatcaa tctttctgct tttcaaggtt gaacaggtgc
       61 aattctatac aagctcccat gtccatatga taatatgtac aacaacccat cagggccagt
      121 cttaatatcc gttataccat caaagccagt tccaaaagtt atttcagaga cttcgtcttt
      181 attatcggcc accaagtcag ttaaaccagg ttgggtgttt gaatcaaact tgagaccagt
      241 tctagttttg ttaacttcaa aataatatag attgccattg tcaatatctc cgacaaaaat
      301 gttatatgca tacttttctc caagctttga tgattttaga aattctatgt cagtaactcc
      361 aattgaattt agccaactga atacagggtc agaatagtga gatcctttaa aattgaccag
      421 atctctttga gttacattgc tccgggaaat aggtcccata acttgatacc agccactgtt
      481 aaaacctggt ttgactaaat tgacttcatc gtaattggct tcgccatttt ctgtatccca
      541 tagataacca gtaataggat caaatgttat tccaaaacta tttctaatac catatgcata
      601 atacttactc aacattatac tgttattgcc gttgcttgaa aatggattgt tgtcaggagc
      661 tagcggtgaa ccatcattag gatttatccg taatatgaca gaggtatcat ctggcttctt
      721 tccatgctta ttgttttgca gaacaccatc acctgtgtta aggtttccaa tcactgcata
      781 aagataatta tccggaccta agaccaattt tcccccgttg tgatatggcc ctgggattgc
      841 cggaagatcc aatatcaaag tctggttgga aagcagatgt ttatgtggat cccagtcata
      901 tctataaatc ctgtttctta atggtagacc atgcttggat tcagtaaagt aaagaaatac
      961 ctttgaattt gtggtgtttg tgtttttagt tgccactgtt gtttttgttt ttttattatt
     1021 tactatttct gattgcgcta cttcagtaaa attaccacct ttggtattac ggtttctttc
     1081 accactatcg ttactattgc tatctcgtag acctagcgta gcaattccta gtaatcctcg
     1141 ttcagctgtt gtattaactg ataccgttaa tatgggctgc ttttgtaata tcccatttga
     1201 aatgagacga acatgaccac tcttttccaa aatcaaaaga ttgttattat caataaatga
     1261 catgctcgta ggagaagaca gaccactagt tatcagtttc agattcaaat tgctattcgg
     1321 atctttcaaa gtcgggattt gctcttgttg cagtggttgt ttttgcggat ctaaaaaata
     1381 gatggctata ccaatcccta aagcaatcga tgaaaatcca acaattaata gtcttttatt
     1441 aaataacaat aatatattct cctcaatgtt taattcactc atatatcatt atattgtagc
     1501 catggtcaaa caaaacatcg gatgtgctta ttgatgccaa gtggcgaacc tatacccact
     1561 ggatgagaaa tttttcagag aggaacaata agtgaaagat ggaaaaaaga gatagataga
     1621 tggtccgatc ctgcctttca gaacttaaat acagaatggt tggaggaaat cttaacctaa
     1681 ttaaaataat aataaaaccc gaccagctag caaaagacat gtggctttcc ttttaagacc
     1741 caattcgccg gttccaggca acttttttgg tttgcctatc gacccctcct tcggctggct
     1801 ataaatcact gggattatat ggcgtttaaa gccactacac accataattt atatgatcgt
     1861 aatgatcgtc agtctatgat atgtcttcac gaaaagaaca acgaagtaca ggacaagcag
     1921 gagagacaac agaatataat acaactacca caacttcaac aacttcacca acagaacaca
     1981 acgctcaata ccgacaatca gtcaaccgag cattagacga aactaaagat aatattagaa
     2041 ggtctactga tgaagcaaga aaagagattc ctcgttacac agaggcagtc aacgaatacc
     2101 aagaacaaac tattcgagcc gcaagagaga tagcagataa ttatatagaa tcacaaaaag
     2161 agattatcaa ttcactccaa tctgcatggc taccccaagt agaaacagca aacaggctat
     2221 ttactgcaag ttggatatct ccaagacatg tagttgacaa ctatgcaaga gtggttagca
     2281 gtttagcaga taatactgtt acagctacta gactagtaaa caacgccatg tttgcaaata
     2341 tggaagcatt caagacatct attcaaaatg caagagataa cgtaaaagag ttctcaagaa
     2401 taggcgttaa tagtgtaaaa acatttgagc aaatatcaag agatactact gcaacaacaa
     2461 ccactttctc ccattagaga aagaagcaat tacgaacata ttctgaagga tagagaaaca
     2521 taacctaacg actttttatt ttaaactcct tgttttttag aacagataat ataacgaact
     2581 atcatgcctt gacgcaaata attgtaaagc tttttttatc aatgtagata tgtcaaatca
     2641 tcatcaggtg tcagaatgca ttcattatta ctacatttat cgctgtccta gtatctgata
     2701 tt
//
LOCUS       DASQSJ010000143         3012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_456230, whole genome shotgun sequence.
ACCESSION   DASQSJ010000143 DASQSJ010000000
VERSION     DASQSJ010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456230"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VE223_02890"
     CDS             <1..228
                     /locus_tag="VE223_02890"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HZC20569.1"
                     /translation="EPIKSYIGDTDMYGKKLRVTEIAVVDEIASAAELAMGKLERVPA
                     VIIRGYKYQMPQKKSSSISELIRTKEKDIFR"
     gene            395..643
                     /locus_tag="VE223_02895"
     CDS             395..643
                     /locus_tag="VE223_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HZC20570.1"
                     /translation="MSTSANKSPAKTIDARGLFCPEPVFRTKIEMERLSIGDMLRVVS
                     DDPESEEDISRWVKRSGHELLSLNKSEKDLEFVIKKAK"
     gene            648..1718
                     /locus_tag="VE223_02900"
     CDS             648..1718
                     /locus_tag="VE223_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent cysteine synthase family protein"
                     /protein_id="HZC20571.1"
                     /translation="MTATTANSSPSPPPSSSLSLSSSATNQSNNVIERIGGTPLIELT
                     SFSTQKVKLYAKLEWFNPFGSVKDRAAYWMIMDAEKRGVLKKDKSVIIEPTSGNTGIA
                     LAGIAATLGYKVEIVIPDKVSEETKRILRHLGATLHETSDDLCPRVGAGTDQSIALAK
                     AISKPRPEIYYMPNQYENDANFFAHYEGTGPEIWSQTDGKITHFLTGCGTGGTITGTA
                     TFLKEKKRDIKVVAIQAQKNHLLQGLRNFEESSMPDLFKRREDVVDEWMTATNDESFY
                     MVKQLAVKERLLVGPSSGSVMASMLKTVEKLDSGLLVGIFADDGRKFKSLYREQNVFT
                     DDEYDRDLKTAKNLSDLAYIVN"
     gene            complement(1944..>3012)
                     /gene="trxB"
                     /locus_tag="VE223_02905"
     CDS             complement(1944..>3012)
                     /gene="trxB"
                     /locus_tag="VE223_02905"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HZC20572.1"
                     /translation="DNDDEYEDESGNTSSSSTSNSLPVLYDIIIIGSGPAGYTAGIYS
                     SRAKLKTLIISGTLPGGQLMTTSEVENYPGFPNGIFGPELMMNMRQQAERFGSTVIDD
                     EVIRVDFKQRPFKITTHSQIYEAESVLICTGASPRKLGIPAEAQFAGRGVSYCATCDG
                     PFFKGEDILVVGGGDTAIEEATFLTKFGKSVKIVHRRDSLRASKILQDKAFENPKIKF
                     MWNSVIADIKGGKKIADVVVRDIKSKKEQKITAGGLFVAIGHEPNTSIFRGQLEMDDK
                     GYIVLKNQTRTSVEGVFAAGDVHDYRYRQAVTAAGFGCMAALDVEKWLTEKKQEQQQQ
                     KQLQQQQQQIPKRTNYVQERS"
BASE COUNT          919 a          594 c          606 g          893 t
ORIGIN      
        1 gagccaataa aaagctacat tggggatact gacatgtacg gaaaaaaact cagagtaacc
       61 gagattgcag tggtggatga aattgcgtcg gctgcagaat tagcaatggg aaaactggaa
      121 cgggtaccgg cggtcatcat aagaggctac aaataccaaa tgccacaaaa gaaatcttct
      181 tcgatctctg aactgattag aacaaaagaa aaggacatct tcagatagat agtaatataa
      241 gacaagaatt aatattgtct tggaatagtt aatattgttt tgtaacaata gcaaaacagt
      301 aacaatgtat atgcatatat gaatatattg gtagctagtt caagtaatcc taaacattta
      361 atattgcgct gtcataattt attctgtttg ccaaatgagt acaagcgcta ataaatctcc
      421 agctaaaacc atagatgcaa gaggactttt ttgtcctgaa cctgtatttc gtacaaagat
      481 cgagatggag cgattgtcga taggagatat gctaagggta gtatctgacg acccagaatc
      541 agaggaagat atttccagat gggtaaagag aagcggccac gaacttttgt ccctaaacaa
      601 gagcgaaaaa gatctcgaat ttgtaataaa gaaggcaaag taaaaatatg acggcgacaa
      661 cggcaaattc atctccatca ccaccaccat cgtcatcatt atcattatcg tcatcagcaa
      721 ccaatcagtc aaataatgta atagagcgca taggtggaac accattaatc gaattaactt
      781 ccttttctac gcaaaaggtg aaactctatg caaagttaga atggttcaac ccatttggtt
      841 cggtaaaaga cagagctgca tattggatga ttatggatgc cgaaaaaaga ggcgtcttaa
      901 agaaggataa aagtgtcatt attgaaccca catctggaaa taccggaatc gcattggccg
      961 gtattgctgc cacgctagga tacaaagttg aaattgttat ccctgataaa gtcagtgaag
     1021 agacaaagag aattctgagg catttgggag ctacccttca tgaaacttca gatgacttgt
     1081 gtccaagggt aggcgctggg acagatcaga gtattgccct tgccaaggct atctcaaaac
     1141 cgaggcctga gatctactac atgccaaacc agtatgaaaa tgatgcaaac ttttttgcac
     1201 attacgaagg tactggccca gaaatttgga gtcagaccga tggtaagata actcactttc
     1261 ttacggggtg tggtaccggt ggaacgatca caggcaccgc aacttttctc aaggaaaaga
     1321 agagggacat caaagttgtt gcaatccagg ctcagaaaaa tcatttgctt cagggcctga
     1381 gaaattttga agaatcttca atgcctgatt tgttcaaacg ccgcgaggat gttgttgacg
     1441 agtggatgac agcgactaac gatgagtcct tttacatggt aaaacaacta gcagtaaaag
     1501 aaaggctact tgtaggacct tcatctggtt ccgttatggc ttcaatgcta aaaactgtag
     1561 agaaattaga tagcggtctt cttgttggga ttttcgctga tgatggtagg aaatttaaga
     1621 gcctttacag agagcaaaat gtttttacag acgatgagta cgatagagat ttaaagactg
     1681 caaagaacct ctcggatcta gcatacatag ttaactaaga cttaccggtt ttcatttaac
     1741 atttttggat ataaataata tccaaatacc caggaaagag ggtaaacata ggggctacat
     1801 ctctatgtct tgcagtaata gacaccaata tcattccaat atctttttgt ctgctttttt
     1861 attatttgtt cgttatttaa ttagttactt gttagcttat ttatttattc tgcatgaatg
     1921 aataaccttt atgaaggtaa ttactatgat ctttcctgga catagttggt tcttttcggg
     1981 atttgttgct gctgttgttg tagttgtttt tgctgttgtt gttcttgttt tttctcagtc
     2041 agccattttt ccacatctag ggccgccatg caaccaaagc cggctgcggt aactgcctgc
     2101 ctgtatctat agtcgtgaac atctcctgca gcaaaaactc cttcgacact tgtccttgtt
     2161 tgatttttca agacaatata tcctttatca tccatttcta gttgacctct gaaaatagag
     2221 gtattaggct catggccaat tgcaacaaat aaacctccag ctgttatttt ctgctccttc
     2281 ttacttttga tgtctctgac aacaacgtct gctattttct ttccgccttt gatatccgct
     2341 attacactat tccacatgaa tttgatcttt ggattttcaa atgccttatc ttggagaatt
     2401 ttacttgcac gcaatgaatc cctcctgtga actatcttta cagattttcc aaactttgtc
     2461 agaaaagtag cctcttcaat agcagtgtcg ccaccaccaa ctaccaatat atcttcacct
     2521 ttgaaaaatg ggccatcaca agttgcacag tatgatactc ctcttcctgc aaactgcgcc
     2581 tcggctggaa tgcccaactt acgtggtgat gctccagtgc aaattaatac tgattcagct
     2641 tcatagattt gtgaatgcgt ggtaatttta aagggcctct gtttaaaatc cacccttatc
     2701 acttcatcat caattaccgt tgaaccaaac ctttctgcct gttgccgcat attcatcata
     2761 agttcgggac caaaaatccc atttggaaag cctggataat tttccacctc gcttgttgtc
     2821 atcagctggc ctccaggaag cgtgccggaa attatgaggg ttttaagttt ggcacgcgaa
     2881 ctatagatgc cggcagtgta tcctgcggga cccgatccaa taataattat atcgtaaagt
     2941 acgggtaaac tatttgatgt tgatgacgat gaggtgttgc cagattcatc ttcatattca
     3001 tcgtcattat cg
//
LOCUS       DASQSJ010000144         2814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_456255, whole genome shotgun sequence.
ACCESSION   DASQSJ010000144 DASQSJ010000000
VERSION     DASQSJ010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456255"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /gene="ilvN"
                     /locus_tag="VE223_02910"
     CDS             <1..535
                     /gene="ilvN"
                     /locus_tag="VE223_02910"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF008864.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HZC20573.1"
                     /translation="MSAATATTTITNGKIMPLYILSALLEDKPGVLFRVTNLFRARNF
                     NIESITVGSTERADLSRMTITTKSDEKTLDQLVKQLKKLIDVVEVKVLDTGNTVYREL
                     ALIKMRAADPTTRMEITNFASIFRANILDIGKETIIVELTGTPDKIDAFKNLVDHYGI
                     TQLARTGVSALPRGVEV"
     gene            536..2053
                     /locus_tag="VE223_02915"
     CDS             536..2053
                     /locus_tag="VE223_02915"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HZC20574.1"
                     /translation="MLDYSEKVRIFDTTLRDGEQTPGISITPEQKVQIAIKLDDLGVD
                     AIEAGFPIVSQGEIEAIKTISAQGLKAEIYGLARTVKTDIDAAMNCGLKFVHIFIATS
                     DIHMQYKLKMNRQQVLEKAIWATDYAKKHGMRVEFSAEDATRSDRKFMIEVFKAVAGA
                     GADRLDIPDTVGYATPQYIGELVKDVKEATKNVPISMHCHDDFGLAVANTISGINAGA
                     SCGHVTINGLGERAGNASLEEFVMALQCLYNRRHSIKTELLYETSKFISNVMGIVVQP
                     NKAITGENAFGHESGIHTHGIINNPLTYEPISPELVGRKRWLQAGKHAGAHGINAMLE
                     DFGIKPEKEQLRDIVEKQKKLADKGKSITTSDLLSIAGDVMHNSKFEEKFKLCDCHII
                     TGMNIIPTAVVRLNTDGKDLIASEIGVGPVDAALKAIQKIAGEMANIKIREYRLDSIS
                     GGSDALAEVSVKVEDKTGNVVSARNAGEDVVVASVQAMMDAINKTMLRKIIYSQN"
     gene            2101..>2814
                     /locus_tag="VE223_02920"
     CDS             2101..>2814
                     /locus_tag="VE223_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HZC20575.1"
                     /translation="MARYNIALVIGDGIGPELTTSAKTILELINDNSNTKFTIKEVNA
                     GDDALAKFGKALPDFSIDLIKKSEACLKGPVGESAADVIIVLRRLFDLYANIRPAKSY
                     PNIKNLSDNVDLVIVRENTEDVYLGWEFSIDENTIIALRLTSEKASRRIAEYAFKAAT
                     LRNKKRKVVAVHKANVLRKGDGLFAKTCRLTAEQYPDIAYSELYVDACAMNLIRNPED
                     FDIVLTTNLFGDILSDEAAQ"
BASE COUNT          960 a          494 c          622 g          738 t
ORIGIN      
        1 tatgtctgcc gcaacggcaa ccactactat aacaaatgga aagattatgc cattatacat
       61 attatctgct ctattagagg acaagccagg agtattattt agggtaacaa atctttttag
      121 agctcgaaac tttaacattg aaagtataac agtaggatcc actgaacgag cagatctgtc
      181 gaggatgaca attactacaa aaagcgatga aaaaacatta gaccagcttg tcaaacagct
      241 taaaaaacta attgatgtag tagaggtgaa ggtacttgat accggcaata cggtttatcg
      301 tgaacttgca ttaattaaaa tgagagcggc agatccaact actcgcatgg aaataacaaa
      361 ctttgcttcc atatttcgag ctaatatact tgacataggg aaagagacta ttatcgtaga
      421 acttacaggg acacctgata aaatagatgc gtttaaaaat ctagtagatc attatgggat
      481 cacgcaattg gcaagaacag gtgtttcagc tctcccaaga ggtgtagaag tttaattgct
      541 agattacagt gaaaaagtaa gaatttttga caccactttg agggatggag agcagacacc
      601 gggaatatcc attactcctg aacaaaaggt ccagattgcc attaaacttg atgatttggg
      661 tgttgatgca attgaagcgg gctttccaat agtttctcag ggcgagatag aagccattaa
      721 aactatatct gcacaagggt taaaagctga aatttatggc ctagcgcgca cagttaagac
      781 agatattgat gctgcaatga actgcggatt aaagtttgtc cacatcttta tcgcgacctc
      841 tgatattcac atgcaatata aattaaagat gaaccgccag caggttcttg aaaaagcaat
      901 atgggccact gactatgcaa agaaacatgg gatgcgggtc gaattttcag cagaagatgc
      961 tacgaggtca gatcgcaaat ttatgataga agttttcaag gcagttgccg gcgccggcgc
     1021 tgacaggttg gatatccctg atactgtggg ctacgccact ccgcaatata ttggcgaact
     1081 cgttaaagat gtgaaggagg caacaaaaaa tgttccaatt agtatgcatt gccacgatga
     1141 ctttggcctg gctgtagcta acacaatttc tgggataaat gctggagctt cttgtggcca
     1201 tgtgacaata aatggcttag gagaacgggc aggaaacgca tctcttgagg agtttgtgat
     1261 ggcactccaa tgtctataca atcgcagaca tagcattaaa acagagctgc tctatgaaac
     1321 gtcaaagttt atttccaacg taatgggaat agtggtccaa ccaaataaag caataacagg
     1381 tgaaaacgcg tttggccatg aatccggaat tcatacccat ggtatcataa acaatccact
     1441 tacttacgag ccaatcagtc cagaactagt cggaaggaaa aggtggcttc aagctgggaa
     1501 gcatgccggt gctcatggta tcaatgcaat gttagaagac tttgggatca aacctgagaa
     1561 agaacagttg cgggatattg tggaaaaaca aaaaaaactc gcggataaag gaaaatctat
     1621 aacaacttcg gatcttttat caatagctgg tgacgtgatg cataatagca agtttgaaga
     1681 aaaattcaaa ctatgtgatt gtcatattat cactggaatg aatatcatac caactgctgt
     1741 agttagacta aacactgatg gtaaagatct cattgcatca gaaataggcg tgggtcctgt
     1801 ggatgcagca ttaaaagcca tacaaaagat agcaggagaa atggcaaata tcaagatccg
     1861 tgagtatagg ttagactcta tctctggagg atcggatgct ttggcagaag tttcggtaaa
     1921 ggtggaagac aaaaccggca atgttgtttc tgcaagaaat gcaggagaag atgtagtagt
     1981 tgcttcagtt caggctatga tggatgctat taacaaaacg atgctaagaa aaatcatata
     2041 ctctcagaac taattaacta actaactaac ttatacgtta tttaaaaaat gttattttga
     2101 ttggcgcgct ataatattgc actagttatc ggcgatggta ttggccctga attgaccaca
     2161 tcagcaaaaa caatcttgga attaataaat gataactcaa acaccaaatt tacaataaaa
     2221 gaggtgaatg caggtgatga tgcacttgcc aaattcggca aggcccttcc agattttagc
     2281 atagatttaa ttaagaaatc cgaagcatgc ttaaagggtc ctgttggcga aagtgccgct
     2341 gatgtaatta ttgttttaag gcgtttattc gatctctacg caaatatcag acctgcaaaa
     2401 tcctatccta acattaagaa tttatctgat aacgtagatc tggtcatagt aagggaaaat
     2461 accgaagatg tatatttagg ctgggaattc agtattgatg aaaatacaat cattgcactc
     2521 cggctgacat cagaaaaagc atcaagaagg atagcagaat atgcgttcaa agcggctacg
     2581 ttgcggaata aaaagagaaa agttgtagca gtccataaag ctaatgtcct gcgcaaagga
     2641 gatggcctat ttgcaaagac ttgtaggtta acagctgaac aatatcctga catagcatat
     2701 agtgaactgt atgttgatgc ttgtgctatg aatctaatca ggaaccccga agattttgat
     2761 attgtcttga caacgaatct ctttggagac atattgtctg atgaggcggc acag
//
LOCUS       DASQSJ010000145         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_496445, whole genome shotgun sequence.
ACCESSION   DASQSJ010000145 DASQSJ010000000
VERSION     DASQSJ010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496445"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..521
                     /locus_tag="VE223_02925"
     CDS             105..521
                     /locus_tag="VE223_02925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20576.1"
                     /translation="MYDAAAAAEQRLIATSKYGSRLTVLAVGVKSSVYIETNNAASVV
                     DDNNEMVVECKNSQCQIVTQTFALRTGYQEDMSQDFKIIGNQITINVFECSECGEYGE
                     KYRELTRYGHTTYIRYYPPHFVEWQCPKHPDAKQYI"
     gene            complement(576..1226)
                     /locus_tag="VE223_02930"
     CDS             complement(576..1226)
                     /locus_tag="VE223_02930"
                     /inference="COORDINATES: protein motif:HMM:NF025825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HZC20577.1"
                     /translation="MPPLGFGRKQEFQTFTTDITNKDDLKEIKKIRHMLNPNEEVFVV
                     ARQSRFKPGGSKFTPNVVFGTDRRIIIKDPSMLGLRENVVDIPYDMISSIRLDKGVFS
                     SNVIFKAPGLISSGRRGTLDKMMEGYGDKRGLAEEEGMIAAIPKNKAEELVEIIRNGI
                     DRDREVYHHPQVEQLHPQQSMSIADELMKLANLKDKAIISEAEFQQMKQDLIKKKI"
     gene            complement(1498..2382)
                     /locus_tag="VE223_02935"
     CDS             complement(1498..2382)
                     /locus_tag="VE223_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20578.1"
                     /translation="MNHTFTAFLSLFIIVLVIWSNNNGHIYAQQLPPSSASPLPSGAA
                     TETLSPQHMTKVKITSPTKGQQVPVGKDLTISGTSMDNSTSNNNCKVSVIVNNVKPYQ
                     SATAAGTGGAADYSKWNFVLTPKYTTLKPGQNKITARYECSNNPASKSFSSVNVTGLQ
                     GTGTTTTVIPQIMTSSPPVAPLAKLPNSTGNGVTTTANVPIVLKPLPGGTCPQDYRLV
                     SGTVCIKDLPSAVPIKTTPTAATTNATIQPPRLQSSSSTTSQPSATSSNDKSTNDNSD
                     NQENFKTKILKSFNKKFK"
     gene            2395..2574
                     /locus_tag="VE223_02940"
     CDS             2395..2574
                     /locus_tag="VE223_02940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20579.1"
                     /translation="MPQYPYIFETKISTVSNPSELQGVILGQGSSRIFILSVSRQQLK
                     IYDYRYKMNNMIPEM"
BASE COUNT          800 a          458 c          497 g          865 t
ORIGIN      
        1 atgtatgcga agatcttggg attatttagc agctacacat taacaacgga aataaatcag
       61 ctcacacact atttaataat ataatagctt gatcctacga agcaatgtac gacgctgctg
      121 ctgctgctga acaacgattg atagctacct caaaatatgg cagtcgttta accgtcctgg
      181 ctgtgggggt gaagagttct gtatatatag aaacaaacaa tgcagcatct gttgttgatg
      241 acaataatga aatggttgtt gaatgtaaaa acagtcaatg tcaaattgtt acccagacat
      301 ttgcactcag gacagggtat caagaagata tgagccagga ttttaaaatt ataggaaatc
      361 aaataacaat aaatgtattt gaatgcagtg aatgcggaga atatggcgaa aagtatcgtg
      421 aactaacaag atatggacat acgacttata tcaggtatta tcctccgcat tttgttgaat
      481 ggcaatgtcc taagcaccca gatgcaaaac aatacatata gatgagtatg ttgaagatat
      541 gtcatccaat ttgagaaaaa ttgagatctg ataaatcata ttttcttctt tatcagatct
      601 tgtttcattt gttgaaactc agcctctgaa attattgcct tgtcttttag attagctaat
      661 ttcattagct catcagcaat agacattgat tgttgtggat gtagttgttc tacttgtgga
      721 tgatgatata cttctctgtc tctatctatt ccatttctta ttatctcgac taactcttct
      781 gctttattct tcggaatagc agctatcatc ccctcttctt cagccaatcc gcgtttgtcc
      841 ccatagcctt ccatcatttt atcaagagta cctcttcgcc cagaactaat caaaccggga
      901 gctttgaaga taacattaga agaaaatact cctttatcaa gtctaatact acttatcata
      961 tcatatggta tatcaactac gttttctcgc aatccaagca tacttgggtc ttttatgata
     1021 attcttctgt cagtaccaaa aactacatta ggagtaaatt tcgagccgcc aggtttgaac
     1081 ctggattgcc tggcaacaac aaatacctct tcatttggat ttaacatatg ccgtattttc
     1141 ttaatttctt tcaaatcatc tttatttgtt atatctgtag taaatgtctg aaattcttgc
     1201 ttcctaccaa aaccaagcgg aggcattaac aaaatatatt catgagatta gatatttaag
     1261 aaatttttaa cattcttaat gaaatttaag aggtgtatgt taacgtaaga tagaaacaag
     1321 aattcaccaa cagtccatca ttttttattc cttcaacgtt atagtaaaat tcggggcagc
     1381 acatgatttc attaatctca aacgccagct gtatgatgct aaatagcgca attgaagagg
     1441 caaattatga attgccattg acctcagact tgggagatag aagacacata tgcattctca
     1501 tttaaatttc ttgttaaagg acttcaatat tttggtctta aagttctctt gattatcaga
     1561 attgtcgtta gtgctcttgt cattactgga agtggcactt ggttgacttg tagtagatga
     1621 tgatgattgc agtcgcggcg gctgaatagt cgcatttgtt gttgctgccg ttggggttgt
     1681 ttttattggt actgcggatg gcagatcctt tatacatact gttccagaaa ctaaacgata
     1741 gtcctgtgga caagttccgc cggggagcgg ttttagcact ataggtacat tagctgtagt
     1801 tgttacacca tttccagtgc tattgggcaa ctttgctaat ggtgctaccg gcggtgatga
     1861 agtcattatc tgtggtatta ctgttgttgt tgtgcccgta ccttgaagtc cagtaacatt
     1921 tacactggaa aaggattttg aagcagggtt atttgagcat tcatatctag cagtaatttt
     1981 gttttgacct ggtttaagtg tagtatactt tggcgtgagt acaaagttcc atttggaata
     2041 atcagctgct ccaccagttc cagcagcagt agctgattga tatggtttta cattatttac
     2101 aataacagac accttgcaat tattattaga agttgaatta tccatagatg ttccagatat
     2161 cgtaaggtct tttcctactg gtacttgctg gcctttagta ggagatgtaa tttttacttt
     2221 tgtcatatgc tgaggcgata gtgtttctgt tgcagctcct gatggtaacg gagatgccga
     2281 agaaggtggc aactgttgtg cgtatatatg accattattg ttactccaaa taactaaaac
     2341 aataataaat agagacagaa aagctgtaaa agtatgattc atactaggtt atacatgcct
     2401 caatatccat atatatttga aacaaaaatc tcgacagtat caaatccaag tgagctgcaa
     2461 ggagtaattc ttggacaggg atctagcaga atttttattc tttcagttag tcgccaacaa
     2521 ctgaaaattt atgactacag gtacaaaatg aacaatatga tacctgaaat gtaaagcaat
     2581 attggttgat ggtctcatac tgtaagcagt tataaaagtc
//
LOCUS       DASQSJ010000146         3850 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_456342, whole genome shotgun sequence.
ACCESSION   DASQSJ010000146 DASQSJ010000000
VERSION     DASQSJ010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3850
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456342"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            533..2020
                     /locus_tag="VE223_02945"
     CDS             533..2020
                     /locus_tag="VE223_02945"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZC20580.1"
                     /translation="MALQQRKTEKVTEMDKKRWMIRYLMIAGIGAVLAIKIYLLLFVV
                     DLTVGIYSFFTSFILFNIFFISFTRYKDPYLDAKDIVLSNDNKPLVSMVVPVKNEEGN
                     IRNCVQSCINSTYSNKEIIIVNDGSNDSTPQILDEMKKEEPLLRIIHLSKSVGKKQAI
                     EAACEIAKGDIFLFMDSDCDIASDALERAVKIFLSDRKIGAVTGHARVRDAAKGNVLL
                     KIQDVWFDGQYRLLKGMETTYSSLTCCSGSLSIFRRAAVKPYIHAWAHDKFLGIEDFK
                     FATDRRLTAYVLGEKPFPVLPNDDKNQHVSHSGGEGSNNNFNIPILLQTGKDGLHTMK
                     SSSDPDIDSPKKNPRYAWRLVYSPSVRASAGVPETFTALLKQQIRWRKSFIRSIFATG
                     GIYWRRPLWPAVLYYLQISLKLLRPIIIMKALIFLPLSGDFATTALYIIGALYSGMLY
                     GIDVRLRSPGYKFWIYRPIMTFISTFIFSWLVIYAAITIRKTGWR"
     gene            complement(2286..3362)
                     /locus_tag="VE223_02950"
     CDS             complement(2286..3362)
                     /locus_tag="VE223_02950"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HZC20581.1"
                     /translation="MRKTSSPTSPPQSFYSYPHPTSVGDEAILIPGASGPAGINTIKS
                     LKMVHFGGKIIATDSSPLSAGFFMADSSEVIPEADHYSFVDRLFEIVKKYNVKVLMPS
                     SGFDIYPYSENRDKLAEIGACAVVSDRKTLEICRDKTLTYRSLSSNNFEVPFTTTDPE
                     KVKEFPVIAKPRFGKGSRDILKIENEADLKYASSRFKNMIFQEFLPGTEYTVDVLSDL
                     NKKPLMAVPRIRIQTKAGISTKGKIIQDPDLETNCMKIAKHVGIRGPSCIQMKESSER
                     VIKLIEVNPRLGGGTIFTTLAGANFPAMILDMVAGKEISSIPKVAEITVIRYFEEIVI
                     RNEKKIGPDTAAESTVLSKTHSLG"
     gene            3458..>3850
                     /locus_tag="VE223_02955"
     CDS             3458..>3850
                     /locus_tag="VE223_02955"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HZC20582.1"
                     /translation="MNIKEDYHVHCNYNDHSSPDLTIRNVLRRAKEINLEALAITEHV
                     RKTSDWIPKYLKEIDLQIKNYPENHDSDLRVISGFEAKILANGSVNCPEEYSKNYFLI
                     ASFHNIFGNKEIWINALKKAIENPDVDVI"
BASE COUNT         1250 a          661 c          729 g         1210 t
ORIGIN      
        1 cacacataat tcatctacct tctatacgct ctcctcttcc aacatcatcc tcttctaacc
       61 tatggttctt atgtttttgt ttcgtcttcg ctcattattg ttatatgtta aatctacaga
      121 tggctataat tactgcacac aatgacttgt taaacagcaa aagtagatca atatatttgc
      181 atatcaatgt tgttataagt ttaagatgtt aataatttta ataaaccttg ataataggta
      241 gaaaaacttg atagttcggt accttgccct attttaaccg aaatacagtc atcaataaaa
      301 atgaactagt ataaatatca aaaacattaa agttcaaatg attaatagat gcttcttcta
      361 ccatgatata gagaataaaa ctaatttcat tgttgctgaa tatattaata agatcaaact
      421 gcgtgaaata tataatactc tacaagaagt aaaaggcgac taaaataatg ttcgatcaaa
      481 ttaaagttat ttgcttgaaa agcatttttc tacttggagg tttgctatag ctttggctct
      541 tcagcaacgg aaaactgaaa aagttacaga aatggacaaa aagcgatgga tgataaggta
      601 tcttatgatt gccggaatcg gcgcggttct tgcaatcaaa atttatcttc ttttatttgt
      661 agtggattta actgtaggca tatatagttt ttttacaagc tttatcttgt ttaatatatt
      721 cttcatatcc tttacaaggt acaaagatcc ataccttgat gccaaagata tagttctttc
      781 aaatgataat aaaccgcttg tttcgatggt agtgccagta aaaaatgagg aaggcaatat
      841 cagaaactgt gttcaatcgt gcattaattc gacttattca aataaagaga tcatcatcgt
      901 taatgatggg agtaatgata gcacgccaca gattttagac gagatgaaaa aagaagaacc
      961 cttactaaga attattcact tatctaaaag tgtaggcaag aaacaagcca ttgaagcagc
     1021 atgtgagatt gccaaaggcg atatttttct cttcatggat agcgattgcg acatagccag
     1081 cgatgcactt gaaagagcag taaaaatttt cctatctgat agaaaaattg gagctgtgac
     1141 aggacatgca agagttagag acgccgcgaa aggtaacgtg ttattgaaga tacaggatgt
     1201 atggttcgac ggacaatata gacttttgaa ggggatggaa accacttatt catcacttac
     1261 ttgctgttct ggctccttgt ctatctttag gagagcagct gtaaagcctt atatacatgc
     1321 atgggcccac gataaattcc ttgggataga ggatttcaag ttcgctactg ataggcgtct
     1381 gactgcatat gttcttgggg aaaagccttt ccctgtattg ccaaatgatg ataagaatca
     1441 gcatgtaagc catagtggtg gcgagggtag taacaataat ttcaatattc ctatactttt
     1501 acaaactggc aaagatggtt tgcatacaat gaaatcatct tctgatccgg acattgattc
     1561 tccaaagaag aatccacggt atgcttggag gttggtatat agccctagtg taagagctag
     1621 tgctggcgtg cccgaaacct ttacagcgct tttaaaacaa caaatccgtt ggcggaagag
     1681 tttcattaga agtatttttg caacaggcgg gatttattgg aggcgccctc tttggccggc
     1741 agtgttgtat tatttacaaa taagtttgaa gctcctccgt cccattatta taatgaaggc
     1801 gctaattttt ctgccacttt caggagattt cgctacaact gcattatata ttataggagc
     1861 attatattct ggcatgcttt atggaataga tgtcagactg cgaagtccag gttataaatt
     1921 ttggatatat cgtccaatta tgacctttat ttcaacattc atatttagct ggttagtaat
     1981 ttatgctgca ataacaatca ggaaaacagg atggagatag atcatagaac attagaagag
     2041 aagcaagact gagcaactgg gaaaaggaga tgggatatgg aagatgaccg atggcaacaa
     2101 gccaggctca aagaataata atggttatgt aaaggggaag agggaaaaga agagaaggtg
     2161 ggacgctgct gtggtggcag ttggaatgtt aataggtttt tctgtaattg ttatgaaaat
     2221 tactggctat tggccttgca atatcataaa tactctacag atcagtcaaa tctcttgtag
     2281 taaatctatc caagagaatg tgtcttcgat aatacagtgg attcagcagc agtatcgggg
     2341 ccaatttttt tctcatttct tatcacaatt tcctcaaagt atctaattac agtaatctct
     2401 gcgacttttg gtattgagga aatttccttt cccgccacca tgtctagtat cattgcagga
     2461 aagttggctc cggccaaagt tgtaaatatt gttccaccac cgagccttgg attgacttcg
     2521 atcaacttaa tcacacgttc tgatgattct ttcatttgaa tgcaagaagg tcctcttatt
     2581 cctacatgtt tcgcaatttt catacaattt gtctcaagat ctggatcctg tatgattttt
     2641 cctttggtag aaatacctgc ctttgtctgt attcggattc taggtactgc catcagcggt
     2701 tttttattga gatcagacaa tacgtctaca gtgtattcag tcccaggcag aaactcttgg
     2761 aatatcatgt tcttaaatct cgatgatgca tacttcagat cagcttcatt ttcaattttc
     2821 aaaatatccc gacttccctt tccaaatcgt ggttttgcaa taactggaaa ttctttgacc
     2881 ttttctggat ctgtggttgt aaaaggaact tcaaaattat tggatgaaag acttcgatag
     2941 gttaaagttt tatcacgaca tatttctaac gtctttctat cgctcacaac tgcacaagct
     3001 ccaatttctg caagcttgtc acgattttcg ctatatgggt atatgtcaaa accagatgat
     3061 ggcatcaaca ctttaacatt atatttcttt acaatttcaa aaagcctatc tacaaacgag
     3121 tagtggtcag cttcagggat aacttcacta ctatcagcca taaagaaacc tgcagataag
     3181 gggctggaat cagtagcaat aatttttcca ccaaagtgca ccatcttcaa cgattttata
     3241 gtgtttattc ctgctggacc ggaagcacca gggattagaa tagcttcatc acctactgaa
     3301 gtaggatgag gataagaata gaatgactga ggtggagatg tcggtgatga ggttttacgc
     3361 aaaggacatg accgatgaaa gactatatta catataaaca ttcgttagta caaaattaaa
     3421 atttataata acgttaaaac tcataattat atactaattg aatattaaag aagactatca
     3481 cgttcactgc aattacaatg accattcttc acctgatctt acaattcgca atgttctcag
     3541 acgtgcaaaa gagattaact tggaagcttt ggctattact gagcacgtta ggaaaacttc
     3601 tgattggatt ccaaaatacc taaaggaaat agatttacag ataaaaaatt atcccgaaaa
     3661 ccatgattca gatttaaggg tcatttccgg atttgaagca aagattttag ctaatggatc
     3721 tgttaattgt cccgaagagt atagtaaaaa ttattttttg atagcaagtt ttcataatat
     3781 atttggcaac aaagaaattt ggattaatgc attaaaaaaa gcaattgaaa acccagacgt
     3841 agatgtaata
//
LOCUS       DASQSJ010000147         3017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_407683, whole genome shotgun sequence.
ACCESSION   DASQSJ010000147 DASQSJ010000000
VERSION     DASQSJ010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3017
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407683"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2629
                     /locus_tag="VE223_02960"
     CDS             <1..2629
                     /locus_tag="VE223_02960"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HZC20583.1"
                     /translation="PGSKTHYAPSLSFTISHMQLSIEPDFKSKTISCEQQLEIIAIHD
                     LDEIILDICELHIKSVFYIDVVATDAAISDDSDSDNRTKRLNFRKYGDKLIVKLDKVL
                     SEGTAFRIVIVYSAKPRKGFYFIEPDEYYPKKNLQAWTQGQAIDSKYWFPCLDHPLVK
                     FESEISVIVPRKFIAISNGKLQVAKVHRWIRGEDNNKVNEKGKKQEEEKRVFTWAEPN
                     PHSAYVTSVVIGKFVERRETYNHDIELLYYVPEDKKSYAERSFENTVHMIRFFEEYLD
                     TKYPYSKYSQVTVEDFMYGGMENSSCTTLTIDTLHDKKAHLDYTSDHLVSHELAHQWF
                     GDLVTCRDWQHIWLNEGFATYCEALYWESSRGTDEFQYYMTQTADDYFDEANSRYKRP
                     IVTKVYKHPDDLFDRHTYEKAGCILHMLRNYIGDKYFKRSLKTYLERYANSVVETDDL
                     RKVLELESGASLQQFFDQWLFRAGHPELKIEFSADSKIVKLKIEQSQDGETFEFNLDI
                     KLVFSSPDRRNEEGGGRARVRGGEEEEIHTFNILEKENVFQIPIDKKGKEIEWFSIDP
                     QFKVLKTFSLKAPKEMLVRQLQNGRTVIERIQSARVLKDHSSEDIIESLQKAVMEDRF
                     WGVSVEAAKTLGSIKSDSAYMALKRCLCSPAMKHPKIRRAIVRAVGEFKKEDSFDLFK
                     SILLHKDQSYFVEAEAATAIGKIKSRQSIPILKKAIETDSFQDIVAQGAMNGLKEFIG
                     DKEIAALLIKKSRYGNNHRVRETATFSLGKFVHENHEVFDHLKNLLTDKWFRVRINAC
                     RAFADAEEPKAIAELAWVTEHDLDFRVRRIAEECINLIKESMKTPKEVVRIRTEVDKL
                     KSNSLEMMQKMNRLERELH"
     gene            complement(2695..2868)
                     /locus_tag="VE223_02965"
     CDS             complement(2695..2868)
                     /locus_tag="VE223_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20584.1"
                     /translation="MSKAIEVLLSKLDANDSLKLELFDINAALRVNNLNTHTVGRFLI
                     QKSSGQKVKAGLK"
BASE COUNT         1066 a          474 c          612 g          865 t
ORIGIN      
        1 acctggtagc aaaacacact atgctccatc attatcgttt actattagcc atatgcaact
       61 ttctatagaa ccagatttta aatcaaaaac cattagctgt gaacaacaac ttgaaatcat
      121 tgcaattcat gatttagatg aaattatact tgatatttgt gaattgcata taaagtcagt
      181 attctatatt gacgttgttg ctactgatgc tgctatatca gacgatagtg atagcgacaa
      241 tcgtactaag agattgaact ttcgtaagta tggagataaa ctcattgtca aacttgacaa
      301 agtgttgtcg gaaggaaccg cttttcgtat tgttattgta tattctgcaa agccaagaaa
      361 aggtttttat tttattgaac ctgatgaata ttacccaaag aagaatttac aagcttggac
      421 tcaaggccaa gcaattgatt caaaatactg gtttccatgt cttgatcatc cactggttaa
      481 gtttgaaagt gagatttcag ttattgttcc tagaaaattt attgcaattt ctaatggcaa
      541 gttgcaggta gcaaaagtcc atcgatggat aagaggagaa gacaataaca aagtgaacga
      601 aaagggaaaa aagcaggaag aggagaagag agtctttact tgggcggaac caaatccaca
      661 ttcagcatac gttacctctg tcgttatagg aaaatttgtt gagagacggg agacatataa
      721 tcacgacatt gagttgcttt attatgtgcc tgaggataaa aaaagttatg cagaaagatc
      781 ttttgaaaat acagtgcata tgatcaggtt ttttgaagaa tatcttgata caaaatatcc
      841 atacagcaag tattcgcaag ttacagttga agattttatg tatggtggca tggaaaactc
      901 aagctgcacg acgttaacga tagatacttt acatgacaaa aaagctcacc ttgattatac
      961 tagcgaccat ctagtgtccc atgagcttgc tcatcaatgg tttggtgact tagtaacctg
     1021 tagagactgg cagcatatct ggcttaacga gggctttgca acatattgtg aagcactgta
     1081 ttgggaatct agcaggggaa ctgatgaatt ccaatattat atgacgcaga cagcagacga
     1141 ctattttgat gaagctaata gtcgatataa gcgaccaatt gtaactaaag tctacaagca
     1201 tccagatgat ctatttgaca gacatacata cgaaaaggcc gggtgcattc tacatatgct
     1261 cagaaattat atcggtgaca aatactttaa gagatcttta aagacctatc tggaaagata
     1321 tgccaatagt gtagttgaaa ctgatgatct acgcaaagtt cttgagttgg aatcaggagc
     1381 aagtttacaa caattttttg accagtggct ttttagagca ggccatcctg agctcaaaat
     1441 agagttttct gcagattcca aaattgtaaa attgaaaatt gaacaatcac aagatggcga
     1501 gacctttgaa tttaaccttg atataaaatt agttttttcc tcgcctgaca gaagaaacga
     1561 agaaggagga ggaagagcaa gagtaagagg aggagaagaa gaagagattc acactttcaa
     1621 catattagaa aaagaaaatg tcttccaaat tccaatcgat aagaagggaa aagaaataga
     1681 atggttctca attgatccac aattcaaggt actgaagact ttctctttga aagctccaaa
     1741 agaaatgctt gtcagacaac tacaaaatgg cagaacagta attgagagaa tacaatcagc
     1801 tcgtgtcctg aaggatcatt cttcagaaga tataatagaa tcattacaaa aagcagtaat
     1861 ggaagatcgg ttttggggag tatctgtaga agcggcaaaa acactaggat caattaaatc
     1921 tgattcagca tatatggccc taaagagatg cctttgttct cctgctatga agcatccaaa
     1981 gattaggcgg gcaatagtac gtgcggtagg tgaattcaaa aaggaagatt cgtttgattt
     2041 gttcaaatcc atattgttac ataaagacca aagttatttt gtagaagcag aagcagcaac
     2101 tgcaattggc aaaataaaga gtagacaatc aattcctatc ttgaaaaagg caattgaaac
     2161 agatagtttc caagacattg tagcccaggg agcaatgaat ggtttgaaag aatttatagg
     2221 cgataaggaa attgcagcat tactgattaa aaagagcagg tatggaaata atcatagagt
     2281 gagggagact gctactttct ctttgggtaa atttgtacac gaaaatcacg aagtatttga
     2341 tcatctcaag aatttattaa ctgataaatg gttccgagta cgaattaacg cctgtagagc
     2401 atttgctgat gcagaggagc caaaggcaat tgctgaatta gcatgggtga ctgagcatga
     2461 cttggacttt agagtaagaa gaatagctga agaatgcata aacttaatca aagaatcaat
     2521 gaagacacca aaggaagttg tccgtattag gacagaagta gacaaactca aatcaaacag
     2581 cttggagatg atgcaaaaga tgaatagatt agagagggaa ttacattaat ttaaggttct
     2641 gcattatttt tacgtgtttg ttagttacaa gtttatggat ttattgcaaa atgtttactt
     2701 tagtcctgct tttactttct gcccactgga tttttggata aggaatcttc caaccgtatg
     2761 agtatttaga ttattgactc gtaatgcagc gttaatgtca aacagctcca gtttcaaact
     2821 atcatttgca tcaagtttgc ttaacaaaac ttcaatggct tttgacaagg cttgaaactc
     2881 atcgaattga tgcaattgta atttatgaat gtcttgaact tgagatttga gtaaatatat
     2941 tataaatgtc cataaacccc cttttcttct gcaaaccggt ttctggaaca aataatatta
     3001 gcaagccaaa tttacaa
//
LOCUS       DASQSJ010000148         2662 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_337567, whole genome shotgun sequence.
ACCESSION   DASQSJ010000148 DASQSJ010000000
VERSION     DASQSJ010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337567"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VE223_02970"
     CDS             complement(<1..405)
                     /locus_tag="VE223_02970"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HZC20585.1"
                     /translation="MSRLIVDLNLAGKNVMVIGGGTEGIRKIRGLLGQNCKITVISNR
                     LNRYLSNLEKQGQIQIIKTKLKDASILDNYKNPFLVLAATDDKMLNRKIIEKGRSMGS
                     FVYAADDPEFSDFSYASVINVEGMMQVAISTYG"
     gene            649..1638
                     /gene="radA"
                     /locus_tag="VE223_02975"
     CDS             649..1638
                     /gene="radA"
                     /locus_tag="VE223_02975"
                     /inference="COORDINATES: protein motif:HMM:NF003301.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HZC20586.1"
                     /translation="MEEDNDFAGDLALDVIEEIGPATKGRLEEAGFKSIKDLVVRGPV
                     DIAETTGIEMDKSVYLCNKARVRLEELGIIDKTFITATKLYDKRKKEERISTGSKNLD
                     DLFEGGIETRAVTEVYGEYGTGKTQICHTLSLLVQQRKSKDGKVCKALYVDTENTFRP
                     ERIVSIALSRNLDPDKALENIIVAKAYNSAHQELIIEQTGPIIDANNVKLMIVDSAVA
                     HYRSEFLGRSTLSERQQRLNKFMHMLLRIAETYNVAILVTNQIVSSPDVIFGDAFKPT
                     GGHVVAHTSTYRIYLKRSGKNRIARMVDSPYHAEREVLFKLTEQGVSDPDEQS"
     gene            1685..1969
                     /locus_tag="VE223_02980"
     CDS             1685..1969
                     /locus_tag="VE223_02980"
                     /inference="COORDINATES: protein motif:HMM:NF013336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20587.1"
                     /translation="MTQSHGTRRKARSIMTKDNVLRGLSYLLINYKVGDKVIVDIDPR
                     EHNSTPHRRFQGKVGTIKEVGKRSLKVAIMFDKKQKILQTRLNHIKLIHT"
     gene            1984..2319
                     /locus_tag="VE223_02985"
     CDS             1984..2319
                     /locus_tag="VE223_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase Rpb4"
                     /protein_id="HZC20588.1"
                     /translation="MTDIIKKEVISLPQVKAILEAVKPDDMDQIQRWTYDYVGKFAKT
                     NSKIGKKMVDELVNQCELKEEEAVEIVNVLPTSLEELRAFSFGWKKLVLTENLEKMLS
                     ILKMSTEVK"
     gene            2355..>2662
                     /locus_tag="VE223_02990"
     CDS             2355..>2662
                     /locus_tag="VE223_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF655 domain-containing protein"
                     /protein_id="HZC20589.1"
                     /translation="MSKPTPHYNNSGRMDEQSSGIQQYQRKYEEYAYILDFTQRGKST
                     TVRGREGIIIQAIGEERLTLLELLGFQNMNFDVGERVYIGREGRDKVMSVLGRLEYNL
                     "
BASE COUNT          939 a          446 c          539 g          738 t
ORIGIN      
        1 gccataggtc gagattgcga cctgcatcat cccctcaacg ttaataactg aagcataaga
       61 gaagtcgctg aattcgggat catctgcggc atatacaaat gaacccatag aacgaccttt
      121 ctctataatc ttacgattta gcattttatc atcagtggca gctaaaacta aaaacggatt
      181 tttataatta tcaagtatac ttgcgtcctt tagttttgtc tttattattt gtatttgacc
      241 ttgcttctct agattactaa gataccgatt taaacggtta cttataacag tgattttaca
      301 attttgacct aagagcccac ggatttttct gataccctct gttccaccac caataaccat
      361 tacattttta cccgcaagat ttaggtcgac tatcaaacgc gacaccagag atttaacaag
      421 ggactctgga tcatttcttt atttaattgt tgcatcatga agttcaacgt gctacaatat
      481 tattaagaca taacaatgca gtgcaatatt gagtaatcca agtttgtctg aatggataca
      541 atttacctcg tcatggatac atcttgaaaa gaactgataa cgatctttac agtgataatt
      601 tatatgctca agactaatta ggagctgctc cagcttgttt actgcacttt ggaagaagat
      661 aatgattttg caggagattt ggctctggat gttattgagg agataggacc agccaccaaa
      721 ggccgtctgg aagaagctgg attcaaatca attaaggact tagtggtaag aggaccagtt
      781 gacattgctg aaactaccgg catagaaatg gataagtcgg tatatctttg caacaaggct
      841 agagtcagac ttgaagaatt aggaattatt gataaaacct ttattacagc tacaaaactt
      901 tatgataaga gaaagaaaga agaacggatt tctactggct caaaaaatct cgatgatctt
      961 tttgaaggag gaatagagac gagggcagtc acagaagtct atggtgagta tggaacaggc
     1021 aaaactcaga tctgtcatac tttatccctg ctagtacagc aaagaaaatc gaaagatggt
     1081 aaagtttgta aggcattata cgtcgataca gagaatacct tcagacccga gagaatcgtc
     1141 tcaattgctc tctcaagaaa tttggatccg gataaggcac tcgaaaatat aattgttgca
     1201 aaagcctata acagcgctca tcaggaatta attattgagc aaactggtcc tattattgat
     1261 gctaacaacg tgaaattaat gatagttgat tctgccgtgg cacattatag atctgaattt
     1321 cttggaagat ctacattatc tgaaagacaa caaagactta ataagttcat gcacatgtta
     1381 ttaagaattg cagaaactta taatgttgca attctggtaa ccaatcaaat cgtctcgtct
     1441 ccagatgtaa tatttggtga tgctttcaaa cccactggtg gtcatgttgt agcacatact
     1501 agtacttata gaatatatct caaacgttcg ggtaaaaatc gaattgccag aatggttgac
     1561 agcccatatc atgcagaacg agaagtgctc tttaaactaa ccgaacaagg agtttcagat
     1621 ccggatgaac aatcataata acaatagata gtaataaatt aaggtttgcg gtaatcagtt
     1681 tgtcatgacg cagtcccatg gtactagaag aaaggctcga tctatcatga caaaagataa
     1741 tgttctgaga ggattatcat atttacttat taattataaa gttggcgaca aggttattgt
     1801 ggatattgat cctcgggaac ataactcaac tccacatcga agatttcaag gcaaagttgg
     1861 aactattaag gaggtaggaa aaagatcatt aaaggtagca ataatgttcg ataaaaagca
     1921 gaagatattg caaacaagac tcaatcacat caaactaatc cacacataga aggcgtatca
     1981 aagttgacgg atatcatcaa gaaggaagtt atctcgctac cacaggtaaa ggcaattctg
     2041 gaggcagtca agccagatga catggatcag atccagcgat ggacatatga ttatgttggc
     2101 aaatttgcaa agactaattc aaagatcggt aagaaaatgg tagatgaatt agttaatcaa
     2161 tgcgaattaa aagaagaaga agcagttgaa attgtaaatg tattgcctac atctctagaa
     2221 gaattgagag cattctcgtt cgggtggaaa aagctcgttc tcacggaaaa ccttgaaaaa
     2281 atgctaagta ttcttaaaat gagcactgaa gttaaataaa aagcaaacca atatcttata
     2341 caggaagaat agtattgtct aaaccgacac cacattataa taatagtggt agaatggatg
     2401 agcaaagttc aggaatacag caataccaga gaaaatatga agagtatgcg tatattctag
     2461 attttacgca gagaggaaaa tcgactacag taagaggacg agaaggtatc atcattcaag
     2521 caattggaga agagcgcctg actctgctag aattgctagg ttttcaaaat atgaatttcg
     2581 acgttggaga gagagtatat attggaagag aaggacgcga taaagtgatg agtgtgcttg
     2641 gcaggctcga atataacctt at
//
LOCUS       DASQSJ010000149         2974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_407818, whole genome shotgun sequence.
ACCESSION   DASQSJ010000149 DASQSJ010000000
VERSION     DASQSJ010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407818"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..963)
                     /locus_tag="VE223_02995"
                     /pseudo
     CDS             complement(1..963)
                     /locus_tag="VE223_02995"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            1873..2262
                     /locus_tag="VE223_03000"
     CDS             1873..2262
                     /locus_tag="VE223_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20590.1"
                     /translation="MMDYKKIDYEKIYEDIIKIDPSIRLVTICDSNGRVMYSQHREGV
                     RNLLTTEESKESLELAVNSWKIRTKLAPKIGKGKYVLAEYEKIKRITMPLGDDDNHLL
                     YITTELQADHSNIIRRIGEITIRKLLL"
     gene            2367..2579
                     /locus_tag="VE223_03005"
     CDS             2367..2579
                     /locus_tag="VE223_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20591.1"
                     /translation="MIKALQDLIQNEAGLLSAFLVNDSITLLGIPLVILYPRELVVLD
                     LLSINANDAYNPKSISWTQKAPMLTA"
BASE COUNT          978 a          543 c          491 g          962 t
ORIGIN      
        1 taatctttgc atttgttcgc ttgtcaattc aaagtctaga caagatagat tatccctgat
       61 ctgggtttct tttcttgctc caataatagg tattatcttg tttttcctag ctgatacttt
      121 tatattttgt tgtctaatcc aattcaaagc aacttgtgct gcgctacagc ctatctcttt
      181 agcaattttg ctaacctctt cggcaattaa tatattccta tcgttaagaa gcctgtttgc
      241 aaactcattt tgaacttcta atctgctatt accttcttgt gttacaaccc tagttgatga
      301 agaggatgaa gtattttgtt gctgtgattg tcgctgttgt tctcttctac tgttcttgtt
      361 atatttacct gtaagaactc ctccagccaa aggagaccaa gacgttattc caatatccaa
      421 tgcatcagcc atgggcagca attctctttc aggagttctt tcaattaggt tatattcaat
      481 ctgcaaacca gtaaattctg tccatcctct tagatttgca agagtgttag cttgcgaaac
      541 tatccaagct ggagcatcgg aaataccaat gtataaaatc ttgccggccc gtaccatatc
      601 atctagagca cgcatcatct cttcgattgg agttagagga tcccatgcat gaacccaata
      661 tagatctatg tagtctgtat ttaatctctt gagacttgac tctaaagatt gtatcatgtt
      721 cttacgatgg ttgccaccag cattgggatc tcctcttctt gtatttgatg tgtatttggt
      781 cgctaaaaca aacctgtctc tgtcagatgc gataaattgg ccaacatact tttcgcttgt
      841 accatcagta tatttgttag cagtatcaat aaagttgcca ccagtatcta catacgtatt
      901 aaatatttta tgacattctt ctttggatgc accccatccc cattcttctc caaatgtcat
      961 agctccaaga caaagctaag acactctaag tccgctctta cctaataatt gatacttcat
     1021 gagatatatc atagattttc atttgattta acgcttgatg gaaacacctc tatccatcag
     1081 aaaacgctat ctgtttacag aaggtttttg aaaaattatt tagtaattac atcttcaagt
     1141 ccagctttga attatgagaa attagagatt atcgaatact aaagtataaa cactgaattt
     1201 tgcaaaggct acaaagctgg atatagtcat taagcgctat acaagacacg atcgtatcaa
     1261 agaacagaat caaagccttt taaatcaagt agaatagcta caaaaagcat cagatagtta
     1321 ctcttggtaa ttaggcatgt atttacagac tagaccccaa taatggctgt tctaacacag
     1381 tccgtctttt gtatatcatt ttaaataata tattgtagca gagaaaggtt ttaagaatgt
     1441 ctcttaaaaa gaccaatgtc cttttaagga agtatattgt aaagtatcga attacctggc
     1501 agccaacgaa aaattatata cattcgttaa atactgagtt ttaataaacc cttagaccgc
     1561 aatatcgata aagatgattt tgatgctagc ataaatcaac gttcatcatt ggcatctatt
     1621 tacctatttt tgtcaataca ttatgctttg tatacaaaga taagcaaaac acgacatcat
     1681 ctttttttaa taaacaaaaa cagattcggt gatctaattt cggaatttct atcatcaggc
     1741 agacaagtaa tttagttctg tacttacttt tctacataag aggatcttca ttctgtggtg
     1801 atatataaag agatgttttc gccaccagtg ccagcagaaa tttcttaaat gttgctttat
     1861 acatagttaa agttgatgga ctataaaaaa atagactacg aaaaaatata tgaagatatt
     1921 atcaagatag atccaagcat tagactagtt actatatgtg attctaatgg tagagtgatg
     1981 tattctcagc atagagaagg tgtaaggaat ttgctaacaa cagaagaaag taaggagtca
     2041 ctggaacttg ctgtaaattc atggaagata cgtactaaac ttgcaccaaa aataggaaaa
     2101 ggaaaatacg tattagcaga atacgaaaag attaagcgta ttactatgcc attaggtgat
     2161 gatgataacc atcttctcta cataacaaca gaattacaag ctgatcattc aaatattatc
     2221 cgtagaattg gtgaaataac tataagaaaa ttattacttt gaattaaaga ttcgacttga
     2281 atattcagcc gctaccgata aatcttttca tctaccatat ggtaccttaa taataatgaa
     2341 tattcaattc attatagtct tctgatatga taaaagcatt gcaagatcta attcaaaatg
     2401 aagcgggttt gctttcagca tttttggtaa atgatagtat aacattgctt ggaattccac
     2461 ttgttatcct gtatccaaga gaattagtag tattggatct tctttccatc aacgcaaacg
     2521 atgcttataa cccgaaaagt atatcctgga cacaaaaagc accaatgctt actgcatgac
     2581 accacatcac tgcggttgtc aatggtaaaa tatacgtttt tggaggcaga cagcttgata
     2641 attcatttag tttgttgtca ctattaacac taatgagatg tatgaccccc agaaaaatac
     2701 atggacagaa cttgagccaa taccatcaaa tcgtggatga atagcagctt ctaactcttc
     2761 taatggtgat atttacgttt ttggagaaca ccctcctgga agcattgata ccattaggtt
     2821 actttacaat aattggaaat atgatccaaa acaaacaaat ggacttcaga gccgccaatg
     2881 cttactgcac gtcacggttt agtagcttta acaataggtg acaaagtcta cgttatagga
     2941 ggagtaaagc ctggctcgaa tgtaagcaaa acaa
//
LOCUS       DASQSJ010000150         2126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_287610, whole genome shotgun sequence.
ACCESSION   DASQSJ010000150 DASQSJ010000000
VERSION     DASQSJ010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287610"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1315
                     /locus_tag="VE223_03010"
     CDS             <1..1315
                     /locus_tag="VE223_03010"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HZC20592.1"
                     /translation="EYSMKYVDPRAITKRTLKLKASNLLLYDIYGQIVELDLDNFKSI
                     YLVGAGKATAAMAEALYKLLNGRISAGAINVPYNTRASIERLSITEANHPIPDEAGVI
                     GTKKILNVLSRAKNSDLVFVLLSGGGSALMTLPAKGITIRQKQRIINSMLSAGASIEE
                     INIVRKHLSMIKGGQLLKFLKSRCRVICLILSDVIGNRIDIVASGPTTPDSSTFKDAS
                     SILRKYNIWRKVQNSSVEEVINKGIHGIISDTPKPGDPLFQNVSNILIGGNVLVCQKA
                     KMYLKKHGLQAVYLGSSFDGEAKNFGALLAHLSSIIKKTSRPFAFVLGGETTVKLNGR
                     KNIGTGGRNQEAILAAALKSKLSRDDDITILCMGTDGIDGKSNAAGGFVTPKTVSMVR
                     ERERQMRKYLDNHDSYNALSKLHSLIVTGQTGTNVNDVSIVCRLK"
     gene            complement(1317..1631)
                     /locus_tag="VE223_03015"
     CDS             complement(1317..1631)
                     /locus_tag="VE223_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20593.1"
                     /translation="MSPPPIDAAEFDAHKDLSTLIIQFLCRNRDNGFSAKEIAQAIGI
                     REEDVNYAMLRLGMTDLISGITGGIISKKQKFGSGRGAIKIEDVTVNGIIYYRCLEPD
                     TV"
     gene            1782..>2126
                     /locus_tag="VE223_03020"
     CDS             1782..>2126
                     /locus_tag="VE223_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HZC20594.1"
                     /translation="MRAIRIRFLLASIIAVINGISLAFWKSGIFNLSYTILIFAGVIC
                     LHASVDLLNDYWDYKRGTDVITRRTKFSGGTGVLPDKLLRPRSVYMAAVIFLILGVLA
                     GTYFVVIRGITIA"
BASE COUNT          691 a          369 c          429 g          637 t
ORIGIN      
        1 agaatattca atgaaatatg tagatccacg cgctattacc aaaagaacct tgaaactaaa
       61 agcttcaaat ttgttgttat acgatatata tggtcaaatt gtagaattag atcttgataa
      121 ttttaagtcc atttatctag taggtgcggg aaaggctaca gcagcaatgg cagaagcact
      181 ctacaaattg ttgaatggaa gaatttcagc gggagccata aatgttccat acaatactcg
      241 tgcgagcata gaaaggctgt ccattaccga agctaaccat ccgattcctg atgaggcagg
      301 agtaatcgga acaaaaaaga ttcttaatgt tttaagtaga gcaaaaaact ctgacttggt
      361 atttgttttg ttgtcgggtg gaggttctgc gctgatgacg ttaccagcaa agggaataac
      421 aatcagacaa aaacagcgca ttataaactc gatgctctct gctggtgctt ctatcgaaga
      481 aattaatata gttcgaaaac atctatcaat gatcaaagga ggacaattat taaaatttct
      541 aaagagtcgt tgtcgagtga tatgtctaat tttgtctgat gtcataggaa acagaattga
      601 tatcgttgca tctgggccta cgacgcctga tagttcgacg ttcaaggatg catcttctat
      661 tctaagaaaa tacaatattt ggagaaaagt tcaaaattca tctgttgaag aagtaataaa
      721 taaagggata catggaatta ttagcgacac accaaagccg ggagacccgc tttttcagaa
      781 tgtaagtaac attttaatcg gtggtaatgt acttgtatgt caaaaagcca aaatgtactt
      841 aaaaaagcat ggtttgcagg ctgtatatct gggttcatca tttgatggtg aggcaaaaaa
      901 ttttggagct ttgcttgcac atctgtccag tatcattaaa aaaacatcca ggccatttgc
      961 ttttgtttta ggaggcgaga caacggtaaa attgaatgga agaaaaaata ttggaaccgg
     1021 aggcagaaat caggaggcca tattggcggc agctttaaaa tctaaattat ctcgcgatga
     1081 tgatattact attctttgta tgggtacaga tggaatagat ggcaaatcaa atgcggccgg
     1141 aggctttgtc accccaaaaa cagtctccat ggttagagaa agagaacgac aaatgagaaa
     1201 atacctagat aaccatgaca gctacaatgc cctttcaaaa ttacattcat taattgttac
     1261 tggacagact ggaactaatg taaatgatgt ctctatagta tgcagattaa aatagtctag
     1321 accgtatcgg gttccaaaca tctatagtag attatcccgt taaccgtgac atcttcaatt
     1381 ttaattgctc cgcgaccgct tccaaatttt tgttttttag agataattcc accagtaata
     1441 ccactaatga gatcagtcat acctagcctt agcatggcat aatttacgtc ctcttctctt
     1501 atgcctattg cttgtgcgat ctcttttgct gaaaaaccat tatccctatt tctacaaaga
     1561 aattgaatta ttaatgtgct cagatccttg tgggcgtcaa actctgctgc atcgattggc
     1621 ggtggagaca tatcttgttt atcgaaaatc tagttataac agtctaaagt taacgccgtc
     1681 ataataattc taacgttaat gatgaggacc aaatattaat taataaacaa aatggattat
     1741 gcttgattgg ttctttgatt atccacgata taacaatttg gatgcgggca ataaggatac
     1801 gttttttact ggcctccata attgcagtca tcaatggtat atcacttgcc ttttggaaaa
     1861 gtggaatatt taacctttca tatactatac taatcttcgc aggtgtaata tgccttcacg
     1921 caagcgtcga tttgctaaat gactattggg attataagag aggcactgat gttattacta
     1981 gaaggactaa atttagcgga ggaacgggcg tactgcctga caaacttctg agaccaaggt
     2041 cagtctacat ggcagcagtt atttttctga tcctgggagt tctggcaggt acctatttcg
     2101 ttgttataag aggaatcaca attgca
//
LOCUS       DASQSJ010000151         2803 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_497096, whole genome shotgun sequence.
ACCESSION   DASQSJ010000151 DASQSJ010000000
VERSION     DASQSJ010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497096"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VE223_03025"
     CDS             complement(<1..391)
                     /locus_tag="VE223_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20595.1"
                     /translation="MGFTNKMERKQKELTINIEQENPHEGDLDPYSIFKYALNSPVTR
                     DRYITRLNRFFTFIGIEGNTIEARCRAFVQNATKDNNNSWAFRNIINFLQVQKDRVDR
                     KEITGSTIRNYVKAIRLFTEMNDILISW"
     gene            complement(413..486)
                     /locus_tag="VE223_03030"
     tRNA            complement(413..486)
                     /locus_tag="VE223_03030"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(450..452),aa:Ile,seq:cat)
     gene            720..824
                     /locus_tag="VE223_03035"
     tRNA            join(720..734,764..824)
                     /locus_tag="VE223_03035"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:785..787,aa:Glu,seq:ttc)
     gene            958..1797
                     /locus_tag="VE223_03040"
     CDS             958..1797
                     /locus_tag="VE223_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HZC20596.1"
                     /translation="MEQFSEYRSKIDDALKRELDLYSWSEFYTPLRYACDGGKRIRPL
                     ILVLTAESIKIGKVNSSKVDNDTFMAASAIELLHTESVIHDDIIDEEDLRRGKPSFHV
                     KYGYNNSILTADFVLGIILNIGSKLNNPRVSGEISNAAIKMSEGEMMEIKLAKGLKVT
                     EDDYIKVLEHKTASLFETSAKVGAILGQGGEDEIHAMATFGNLLGIAYQIHDDLIDWN
                     NEDRLFNVLVKKNDQSKEFVDRMEKLYLSYSTKAKNELRKICDCTPRKHLQHLTDLAS
                     VQF"
     gene            complement(1923..>2803)
                     /locus_tag="VE223_03045"
     CDS             complement(1923..>2803)
                     /locus_tag="VE223_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HZC20597.1"
                     /translation="LPDAYEGAPTTIGALLAAGTKKAGFAAALRVIVLGMFALNVDWT
                     LTLAIVAVFTMTLGNLGALIQKSVPRILAYSSIAQAGYILIGIAIAPYSNQALTGSLF
                     HILNHAVMKSAGFIAAAAVAVTLASYSLEKYRGLGRRMPITAIAFSISLLALAGVPPL
                     NGFWSKLVIFGAAINSGSVVAWGPYLAIAGVLNSALSLGYYAWIIRKMYMEEGPDMSK
                     VKEPRAMVAVLIFAMVFMVGFGVWHAPILQFASKAVPHLSNIVPTGSTHLSNIVPTGS
                     THLSNIVPSSKTLHDF"
BASE COUNT          900 a          566 c          534 g          803 t
ORIGIN      
        1 tccaagaaat aaggatgtca ttcatttctg tgaaaagcct tattgccttg acataattcc
       61 gaattgtaga tcctgttatt tcctttctgt ctacacggtc tttttgaact tgtaagaagt
      121 taattatatt cctgaaggcc cagctattat tattatcctt cgtcgcattt tgtacgaaag
      181 ccctacagcg ggcttctata gtgttgccct caattccaat aaaagtgaag aatctattga
      241 gcctcgtaat atatctatct ctggttacag gcgaattcaa tgcatacttg aagattgaat
      301 atggatctag gtctccctca tgcggatttt cttgttctat attaatagtc aattcttttt
      361 gttttctctc cattttattc gtaaaaccca ctaaaaagaa gtgatatcac aatgggccca
      421 agggggtttg aacccctgcc cgaccggtta tgagccggtc gctctaccag gctgagctat
      481 gggcccacag gtaaaaatcg ataatataaa agatatatag gttttgacat cgatccatga
      541 gtgaattaat ttgtaaaaat cctattacca accctattaa gagtcacact caagcagctt
      601 attttaatga aaagttactt gttagaacat attacacaga cttcttactc ttttaaatta
      661 gacaccaata atttacaaga aaggatttta tgtgaaatga atttcaaggt tcatgaggtg
      721 ctccggtggt gtagtagctg ataacatcaa aacagctgca tagtccggtc aagcattgtg
      781 gcctttcgag tcgcagatcc cgggttcaaa tcccggccgg agcaaaatca gtctgtctac
      841 aacctgttgt tttagaatat attatagccg gtaaagcatt aatatgatca tcatttcaag
      901 atatcgtagg caagagcaga atctttgaat aaaagaaacc tggaagccaa tcctttaatg
      961 gaacagttca gtgaatatcg gtcaaaaatc gacgatgcac tcaagcgtga gctcgatctt
     1021 tattcttggt cagaatttta taccccatta aggtacgcat gtgatggagg caaacgcatc
     1081 aggccactta ttctagtact cactgctgaa agcataaaaa taggaaaagt gaattcttcg
     1141 aaagttgata atgatacatt tatggctgcc tcagctatag agcttctgca cacagaatca
     1201 gttatccacg atgacataat agatgaagaa gatcttagac gaggtaaacc ttcttttcat
     1261 gtaaagtatg gatataataa tagcatcctt accgcagatt ttgttctagg tatcattctc
     1321 aatattggtt ctaaattaaa taacccacgc gtttcaggtg aaatttctaa tgccgcaata
     1381 aaaatgagcg aaggtgaaat gatggaaatt aaacttgcca aaggtcttaa agttacagaa
     1441 gatgattata tcaaagtcct cgaacataaa actgcttcac tctttgagac atccgcaaaa
     1501 gtaggcgcaa tactaggaca gggaggagaa gatgagattc atgcaatggc tacatttggc
     1561 aatttgcttg gaattgcata tcagattcac gatgacttga tcgactggaa taacgaggac
     1621 agactcttca acgtacttgt aaagaaaaac gatcaatcaa aagaatttgt cgacaggatg
     1681 gaaaagcttt atttatctta ctctacaaag gctaagaatg aacttcggaa aatatgcgat
     1741 tgtacaccga gaaaacactt gcagcacctg acggatttgg cttcagttca gttctaaaaa
     1801 caccatgttc gcaaatatct acggaatttt ctcgacaggt atcaaaatgt gtcaatggtg
     1861 ttaattaatc ctaaatcatt atcatttact tgtgatttcg tcgtgatcta ctactaccgc
     1921 tattaaaagt catggagtgt ttttgagcta gggactatgt tactcaaatg agttgatccc
     1981 gtagggacta tgttactcaa atgagttgat cccgtaggga ctatgttact caaatgaggt
     2041 actgcttttg atgcaaactg cagtattgga gcatgccaaa caccaaaacc aaccataaac
     2101 accatcgcaa agatcaatac agcaaccata gcccttggtt ctttaacttt gctcatatct
     2161 ggtccttctt ccatatacat ttttctaatt atccatgcat aatatcccaa cgaaagagca
     2221 ctgttgagaa ctccagcaat tgcaagatag ggcccccatg ccaccacaga gccactgttg
     2281 atggcagcac caaatataac caatttactc cagaagccat taagcggggg aacaccagca
     2341 agagcaagta aagaaattga gaatgcaata gctgtaattg gcattcggcg accaagacct
     2401 ctatattttt ctaaactata actagcaaga gtaactgcaa ctgctgctgc tgctatgaag
     2461 ccagcagact tcatcacagc atgattcaat atatgaaaca gagagccagt taatgcttgg
     2521 ttagagtatg gcgcaattgc gatacctatt aaaatgtaac ctgcttgtgc aatgctcgaa
     2581 tatgcaagaa ttcttggaac gcttttttgt attaatgcac ccaagttgcc aagtgtcatt
     2641 gtaaaaacag caactatagc gagagtcagc gtccaatcaa cgttcaatgc aaacattcca
     2701 agaacaatta cacgcaaggc tgccgcaaat ccagccttct tagtacctgc agctagaaga
     2761 gcacctattg tagtgggagc accctcatat gcatctggca gcc
//
LOCUS       DASQSJ010000152         4113 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_367138, whole genome shotgun sequence.
ACCESSION   DASQSJ010000152 DASQSJ010000000
VERSION     DASQSJ010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4113
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367138"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            21..647
                     /locus_tag="VE223_03050"
     CDS             21..647
                     /locus_tag="VE223_03050"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HZC20598.1"
                     /translation="MDKVILSSLYLTHLEPGLSPFNRIRARIPIDKKFYRSRVNILER
                     RGLVEKYNDESKLTFIGRDALKVVLVGGVFHLIHPGHIHTLKAAKAQGDILVVVVART
                     STAMKINKDRKIYHDENTRRELVASLSFVDWAIIGKEGTLYDTVEYVKPDIIALGYDQ
                     AHSEKDISDNCKRRNLNVRVVRLNTPIPRTKSSAIKNELGEGDYFYKI"
     gene            complement(644..1351)
                     /locus_tag="VE223_03055"
     CDS             complement(644..1351)
                     /locus_tag="VE223_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HZC20599.1"
                     /translation="MVEIKLQHIFTMTDLLRRGAQYNFIELTTSDLGKNIKKSQQAAS
                     RHLLDLENAGYIERLRKGQTFRIKITNRGYSEIQSLFSTLKSAIEVTPFTIDFEGIVV
                     SGMGEGAYYMALEGYRKQFNEKLGFEPYPGTLNVKLVDQVFMNARRDIGKYPSVFIDG
                     FSDDARTYGWVKCYKAEINKAAINNAAVLVLERTHYDDSMLELIAPISLKESIGIHNG
                     DKISIKVHISDNLERKY"
     gene            complement(1357..2619)
                     /gene="dnaG"
                     /locus_tag="VE223_03060"
     CDS             complement(1357..2619)
                     /gene="dnaG"
                     /locus_tag="VE223_03060"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF003108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase DnaG"
                     /protein_id="HZC20600.1"
                     /translation="MNLPSTGIVKYHVKLKFEVDGLVEKADIIGAIFGQTEGLLGPEM
                     NLNELQKVSKVGRIEVNVDTKSNIAKGDALIPMSTDISTAALIAAAIESIDKVGPFQA
                     RFGLFGIDDIRAIKKKVIVDRAKKIVQEWATKTISEGEEMLKDVYDASKPGKLTAFGK
                     AQLACGTGVFDSDWIILVEGRADVINLLRAGFDNAIAIEGAKIDETVTKLTEGKKVIA
                     FLDGDRAGDLILKELQGLVKIDKILRAPHGREVEECTPIEIAELLRETMPFVSTDGQH
                     ISSLQMQHHESRQTQRRDKQEQVIQEEQQQIQFTSNNGINQQAENAEILSAVREVYPQ
                     INETLEAVLLDSSMKTLIKIPVSEVVKKLNNTEGAKMLILDGIVTQRLVEAAYKAGIE
                     YIVGHRMSELKKSADLRVRTFGEMGISN"
     gene            complement(2745..3182)
                     /locus_tag="VE223_03065"
     CDS             complement(2745..3182)
                     /locus_tag="VE223_03065"
                     /inference="COORDINATES: protein motif:HMM:NF025044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HZC20601.1"
                     /translation="MGYRLIDNTTIDHLRRFIEMLNEEAENGSVIVVEGKRDVEALSR
                     LGFNGSLTVLNRFKGISHFVDNHCQVSKKIILLLDMDRTGKYLTSKILTQLQHKGNNV
                     NLFYKKKLARITKGKIRHVEELATYARNLSGATGTRRDLYFYI"
     gene            3369..>4113
                     /locus_tag="VE223_03070"
     CDS             3369..>4113
                     /locus_tag="VE223_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HZC20602.1"
                     /translation="MFWDRGSGLADLRKDYVLDKFVIVPRISGVQYESYTSFDDKCAY
                     CPGNESMTEPALLALVAKDNMLQRLSDSEENPIADWCVRVFESSDPAVTTTSTNSYTD
                     KPLYSEPAYGYHLIVVASPHHKEKLSQISIDQWANVLLVIQDRVRWLYTKKSVTYVSI
                     FVNSGQIAGTRVDHPHLNLVTFSTIPPTIELEADASHRYMNENGNCHACAIISIESNG
                     PRQILSTDSFLAFSPWAATYPYEFWIYPKR"
BASE COUNT         1189 a          834 c          732 g         1358 t
ORIGIN      
        1 tctgatagag aatggatcct atggataagg taattctgtc gtcattatat ttgacccatt
       61 tggagcctgg gctctctcca tttaatagaa ttagggctag aattccaata gataaaaaat
      121 tctacagatc aagagttaac attcttgaac ggcgcggttt ggtggaaaaa tataatgatg
      181 aatcaaaact cactttcatt gggagagatg ctctaaaggt agttttggtg ggcggagtgt
      241 ttcatttaat acatcccggt catattcaca cattaaaggc agcaaaagca caaggtgata
      301 tacttgtagt agtagtggca aggacttcta ccgcgatgaa gattaacaaa gacaggaaga
      361 tctaccacga tgagaacact cgccgagagc ttgtcgcctc tttgagtttt gtagactggg
      421 caatcatagg gaaagaaggt accctgtatg acacagtaga atatgtaaag cccgatatta
      481 ttgctttagg ttatgatcaa gctcatagcg aaaaagatat atccgataac tgcaaaagga
      541 gaaacctgaa tgttagggtt gtaaggttga acactcctat cccaagaaca aaaagttcag
      601 ctataaagaa cgagcttgga gaaggcgatt atttctataa gatttaatat ttcctttcca
      661 aattatcgct gatatgcact tttatgctga ttttatcacc attgtgaatc cctattgatt
      721 ccttaagtga aatgggtgca ataagctcca acatactatc gtcatagtgt gttctttcca
      781 aaacaagcac tgcagcgttg ttaattgcag ccttgtttat ttcggctttg taacatttga
      841 cccaaccata tgtgcgagca tcatcactaa acccatcgat aaacactgaa ggatatttgc
      901 ctatgtcacg tctggcattc ataaaaactt gatctactag cttgacattc agcgttccag
      961 gatacggttc gaagcctaat ttttcattaa attgcttacg atatccctct aatgccatat
     1021 aatatgcacc ttcgcccatg cccgaaacta ctattccttc gaaatcaatt gtaaatgggg
     1081 taacttctat tgcagatttc agagtagaaa aaagactttg gatctcagag tatcctctgt
     1141 tggttatttt tattctaaat gtttgacctt ttcttagacg ctcaatatat cctgcattct
     1201 ccaagtctaa gagatgtctt gaagctgctt gctgtgactt ttttatattt tttcccaaat
     1261 cagatgtagt taattctata aaattatatt gagcaccacg tcgaagtaag tctgtcatag
     1321 taaatatgtg ctgtagcttt atttctacca ttgcacctaa ttgctaattc ccatctcacc
     1381 aaatgttcta accctgaggt ctgcagattt tttcaattcg ctcatcctat gacctactat
     1441 atattcaatt ccagctttgt atgctgcttc tacaagtctt tgtgtaacaa taccatcgag
     1501 tataagcatc ttggcccctt ctgtgttgtt aagctttttt actacttctg aaactggaat
     1561 tttaattaat gttttcatcg aactgtcaag cagaactgcc tcaagggtct cattgatttg
     1621 aggataaact tctctgacag cagaaagaat ttctgcattc tctgcttgct ggttaatacc
     1681 attgttagat gtaaactgta tttgttgttg ttcttcctga atgacttgtt cttgtttgtc
     1741 tcgtctttgt gtttgtctgc tttcatgatg ctgcatctgt agggatgaaa tatgttggcc
     1801 atcagtggaa acaaaaggca tcgtttctct caatagttcg gcgatttcta taggagtaca
     1861 ttcttctacc tccctaccat gaggagctct taatatttta tctatcttta ccagaccttg
     1921 taattctttt aggattaaat cgccagctcg atctccgtct agaaaggcaa ttactttttt
     1981 gccttcagtg agtttagtaa ctgtctcgtc aatttttgct ccttcgattg caatagcatt
     2041 atcgaatcct gcacgcaaca aattaatgac atccgcacga ccttcgacaa gaataatcca
     2101 gtcagaatca aatacaccag taccacatgc caactgagct tttccaaagg cagtaagttt
     2161 gccaggtttg cttgcatcat acacatcttt aagcatttct tctccttcac tgatggtctt
     2221 cgtagcccat tcctgcacta tcttctttgc tcgatctacg attactttct tctttatagc
     2281 cctgatatcg tcgataccaa agagtccaaa tcgggcttga aatgggccaa ctttgtctat
     2341 actttcaatt gcggctgcga ttaatgctgc agtggaaata tcagtactca ttggaattag
     2401 agcatcacct tttgcaatat ttgactttgt atccacattg acttctattc ttcctacttt
     2461 tgacactttt tgcagttcgt tgaggttcat ttctggtcca agaagaccct ctgtctgtcc
     2521 gaagattgca cctattatat ctgccttttc gactaatccg tcaacctcga acttcagttt
     2581 aacgtgatat ttaacaatac ctgtgctagg caaattcata acctcatatt actattaagt
     2641 aaactaaagc tggtctgggt tgaatataag tgctttgacc gtttgcaaat ctatagacac
     2701 ctacgcttcc ggataatgtg ttcgaattgc taagaaaatg attctcatat ataaaaatat
     2761 agatcccttc ttgttcctgt ggcgcccgat aaattgcggg catacgttgc aagctcctcg
     2821 acgtgcctga tctttccctt agtaattctt gctaattttt ttttgtagaa caaattgaca
     2881 ttgtttcctt tgtgctgtag ctgagttaat atttttgatg tcagatattt tccagttcta
     2941 tccatatcta acaataaaat tattttctta ctcacctggc aatgattgtc cacaaaatgg
     3001 ctaatccctt tgaaacgatt taacacagtt aaacttccat taaatccaag acgagatagc
     3061 gcttccacat ccctttttcc ctcaacaact atgactgaac cattctctgc ctcttcatta
     3121 agcatttcaa taaatcttcg taaatgatca atagttgtat tatctataag tcgataaccc
     3181 attggtcaca tgctatgcaa atcaaagaga tttaatgatt ttcattccgt cgaccttgaa
     3241 gaaggccttc attctctcat tgtgtgacaa gacatgaagg cggaaagaca agtataaaaa
     3301 catatattca tatattatat tactcagact taagtaatac agaaccttta attaaaggat
     3361 attgcacgat gttttgggac agggggagcg gtttggcaga tctacgcaag gattatgttc
     3421 ttgataaatt tgtaatagtg ccaagaatat caggagttca atacgaatcg tacacgtcat
     3481 ttgatgacaa atgtgcatat tgccctggta acgaatcgat gacagaacct gcattacttg
     3541 ccctcgtggc aaaagataac atgcttcaac gtttgtcgga tagtgaagaa aatcctatag
     3601 ctgactggtg tgtcagggta tttgaaagca gtgacccagc agtcactacc acatctacaa
     3661 attcatacac tgataaacct ctctatagcg aaccagcata tggatatcac ttaattgttg
     3721 ttgcttcgcc acatcataaa gagaagcttt cgcaaatttc catagaccaa tgggctaatg
     3781 tgttgttagt tattcaagat agggttagat ggctttatac aaaaaagagt gttacttatg
     3841 tttctatttt tgttaatagt ggacaaatag cagggacaag agttgatcat cctcatttga
     3901 atcttgtaac gttttctaca attccgccaa caatagaatt agaggctgat gcttcgcaca
     3961 ggtatatgaa cgaaaatgga aattgtcatg cttgtgctat aatatctata gaatccaatg
     4021 gcccaaggca aattttaagt accgatagct tccttgcatt ttctccctgg gctgccacct
     4081 acccatacga attttggatt tatccaaaac gac
//
LOCUS       DASQSJ010000153         2799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_457187, whole genome shotgun sequence.
ACCESSION   DASQSJ010000153 DASQSJ010000000
VERSION     DASQSJ010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457187"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1864
                     /locus_tag="VE223_03075"
     CDS             <1..1864
                     /locus_tag="VE223_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HZC20603.1"
                     /translation="SQNFMAVILHSLPSESALTKIEYEGPRIALYSKNPGYLIQNAQV
                     VSNMVNTIKKRIVIRTDESIRKSEEESIEILNKTIPKEVGLIETFFDQALGEILIFVE
                     KPSLLAHTTEDFDSVDLVEKTGWKVRARKAPQEMSIIRNINKILYDTTNKRIHFYKEV
                     GEKIFRTKLDEVTEASLITLGGFGEIGRSSMLLSTHESKILLDCGINIASKDPLTSLP
                     RFDITGVGVDEIDAIVLSHAHLDHTGFLPSMFKYGYRGPVYCSEPTLPLMNLLQREYI
                     KNIGGTTTLYSDKDIDDVIMHAITLSFGTVTDISPDVKLMLSNSGHILGSASIHLHIG
                     NGDHNVVYTGDMKFGKMSSLENASWNFPRVESIIIESTYGGKEDVFPQHGEADIHLID
                     SINKTVAENGKVLIPVSSIGLSQELIFLINMYMRAGKIIETKVLVEKIISNATSICEA
                     YPEYLSKEIKHIILRGDESPFRSKQFVTVESHTLEKEEPAIILAPSSMLLGGPSVEYL
                     GQISEDAKNKLILVSFQAAGTPGKIIQDGSRQVVINDRCIKINCQVEKIEGFNTHSDY
                     NQLIAYINRLRPKLRRVLVNHGERNKIQNLASSINKIFKIQTQHPLVQEAIKLL"
     gene            complement(1922..2203)
                     /gene="sepF"
                     /locus_tag="VE223_03080"
     CDS             complement(1922..2203)
                     /gene="sepF"
                     /locus_tag="VE223_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HZC20604.1"
                     /translation="MNSMQKSPLYLKAITIRDIKDISSIKDEIKKDIILILRVTPLAQ
                     KDVEELRKIIEDLYRYVRSTGGDIARLGEERVVVTPPSVKIWRRSYDLK"
     gene            2500..2655
                     /locus_tag="VE223_03085"
     CDS             2500..2655
                     /locus_tag="VE223_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20605.1"
                     /translation="MPTDLVANFDSFIWVAVGLFIAGLFAIMVYGRSSSKAKQYPRQQ
                     GTSSDIE"
BASE COUNT          954 a          486 c          511 g          848 t
ORIGIN      
        1 aagccaaaat tttatggcag taatactgca tagtcttccc agtgaatctg cgcttaccaa
       61 aattgagtat gagggcccaa gaattgctct ttactccaag aacccgggat atctaataca
      121 gaatgcccaa gtggtttcta acatggtcaa tacaataaag aaaagaattg ttattcgtac
      181 tgatgaatca atacggaaat cagaagagga atctattgaa attttaaaca agactattcc
      241 caaagaggtt ggtttgattg agactttctt tgatcaggca ttaggagaga ttctgatatt
      301 tgtcgaaaaa ccttcactac ttgctcacac tactgaggat tttgatagcg ttgaccttgt
      361 ggaaaaaaca ggatggaaag taagagctag aaaagctcct caagaaatgt ctataattag
      421 aaatattaat aaaattctct acgatacaac aaataaacga attcactttt acaaagaagt
      481 tggtgagaaa atttttagaa cgaaactcga tgaagtaaca gaagctagtt taataacatt
      541 aggtggtttt ggagagatag gtcgttcttc aatgttgctt tctactcatg aaagcaagat
      601 tttactcgat tgcgggatca atatagccag caaagatcct ttaaccagct taccgagatt
      661 cgatattacg ggagtaggag ttgatgaaat tgacgcaata gttttgagcc atgctcatct
      721 tgatcataca ggtttcttgc cttccatgtt caagtatgga tatagaggac cagtatactg
      781 ttcggagcct acactaccac taatgaattt gttgcagaga gaatatatta agaatattgg
      841 tggcacaaca acactatatt ctgataagga tatagatgat gtaataatgc acgcaattac
      901 tcttagcttt ggaactgtaa ccgatatctc tccagatgta aaacttatgc ttagtaattc
      961 cggccatatt ctaggttctg catcaattca tttacacatt ggaaatggag atcacaatgt
     1021 tgtttataca ggtgacatga aattcggaaa aatgtcttcc ctcgaaaatg cctcatggaa
     1081 ctttcctagg gtcgaaagca taatcattga aagtacatat ggtggtaaag aagacgtttt
     1141 tccgcagcat ggagaggccg acatacatct tattgatagt ataaataaga ctgttgcaga
     1201 aaatggaaag gtgttaattc cggtatcttc aattggatta tcccaagagc ttattttctt
     1261 aattaatatg tatatgagag ctggcaaaat tatcgaaaca aaagtattgg ttgagaagat
     1321 catttctaat gctacctcca tatgtgaagc ctatcccgaa tacctctcaa aagaaataaa
     1381 acatataatt ctgagaggtg atgaaagtcc cttccgctca aaacaatttg taaccgttga
     1441 atcccatacc ctggagaaag aagagcccgc aataattcta gctccatctt caatgttact
     1501 cggcgggcca tcagtagagt atctgggaca aatttctgaa gacgctaaaa ataagttaat
     1561 tctggtatcg tttcaggcag cagggactcc agggaagatt attcaagatg gaagccggca
     1621 agtagttatt aatgatcgat gcattaaaat taattgtcaa gttgagaaga ttgagggatt
     1681 caatactcac agtgattata atcaactaat agcctatatc aacagactta gaccaaagct
     1741 cagacgagta ttagttaatc atggagagcg gaataaaata cagaatttag caagctcaat
     1801 caacaagata ttcaaaatac aaacacaaca cccattagta caagaggcaa taaaattatt
     1861 ataattagtc tattaaccat ttatcataaa aaatcaagat taaaaggtga tgatagtaaa
     1921 atcactttag atcatacgat ctgcgccata ttttaacact tggaggtgtc actacaactc
     1981 gctcttcacc caatctggca atatctccac ctgtggacct aacatatctg taaaggtcct
     2041 caattatctt cctaagctcc tcaacatctt tttgtgccag tggtgtaaca cgcaaaataa
     2101 gaattatgtc ttttttgatt tcatccttaa tactggatat atccttaata tcacgtatag
     2161 ttattgcttt caagtagagt ggtgattttt gcattgaatt catctcttta ttattaaact
     2221 atagttaaaa cccaacaaga ttgtcagata gtcatgctgg tcaaaagtca ttcactgact
     2281 agatgatttt gatttataat ttcttaccca attggagatt ttccgttgct gtattatatc
     2341 gttatgatct tatttattga tacaatcgtt agaacaatga cataaacctt tcctgaatat
     2401 taattaaaga aggtagtatt ttacagaata cagattacat gattttaact atcgatttaa
     2461 aacgaatata tttgccatta gctaactcaa caaatataga tgccgacaga tctggttgca
     2521 aactttgact cgtttatatg ggttgcagta ggacttttta tcgctggcct cttcgcaata
     2581 atggtttacg gaagatcaag ttctaaagca aaacaatatc ctagacaaca aggaacgtct
     2641 tctgacattg aataatggag aggcagctgc tgttacttgc gattcaacta ttaagaaatt
     2701 cagaagagaa ggctttactt ctttaacgac aattcaagag aaagcattgc cagttgttac
     2761 gaggaaaatt aactgcttgc ttgtcgctcc aactggttc
//
LOCUS       DASQSJ010000154         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_497402, whole genome shotgun sequence.
ACCESSION   DASQSJ010000154 DASQSJ010000000
VERSION     DASQSJ010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497402"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            204..947
                     /locus_tag="VE223_03090"
     CDS             204..947
                     /locus_tag="VE223_03090"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZC20606.1"
                     /translation="MSYHMEGDDNINNNSTSSLPGLQQHHQQHHESLLHPLNTGVIIR
                     NTLQQDIPKIVNLQEESFPYLSRYGNIWHPNELQNHLKVFPEGQFVAVEPDGTVVGSA
                     STLIISLNPEYAEHTWNQITANGLFTNHNPKGDSLYGADISTHPKYRHEGIGKMLYDA
                     RKQLVTQLNLRRMIAGGRLFNYCEYSNRMSALEYAQKVISRELRDPVLSFELDNEFKF
                     IKILPNYLDDVRSLNYASFIEWVNPNIVK"
     gene            complement(1148..2305)
                     /locus_tag="VE223_03095"
     CDS             complement(1148..2305)
                     /locus_tag="VE223_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HZC20607.1"
                     /translation="MIKKRQQAIKLTITLAAIIVVTAVITPLKPAVFAQSASANSNTS
                     TGYNSVKTLRIGYFPNINHAQAVIGFGNGDFQKALGNNINVQTTVFNAGPSAIEALLA
                     KRIDATYVGPNPAINGYVVSDGKDLKIIAGSSSGGASFVVRNDAGINSPKDLAGKRLA
                     SPELGNTQDIALRSYLLINGLKTTDQGGNIVLTPIANPDILTLFLKKQLDGAWVPEPW
                     ATRLVKEANGRIFLDERSIWPGGKFVTANIAVSTDYLKNNLDITSKLLSAHVNETVWI
                     NNHKDEAVQDFNTQVKKLTGKSIPQDELKQAFSMIDFTYDPLKLSLFQSANNAYNLGL
                     LAKGKPHPDLSGIFDLTILDQVLKSKGLAPIEQLQSQQSSSSSGGNLGAAE"
BASE COUNT          794 a          444 c          440 g          859 t
ORIGIN      
        1 taaacatgat gataatatta taataaaaca attagattct tgcaatagtt atggtttatg
       61 gttatcaatg tttatcatta ataccattca tggagtccac aggattatga tcaatttgaa
      121 tctattttaa ggcgcttctc atcccaataa tcgccaacct tatatatcat tttactatta
      181 cccacaaatc tatagataat aatatgtcgt atcatatgga aggtgatgat aatattaata
      241 ataacagtac ttcttctttg ccaggactac aacaacatca tcaacaacac catgaatcat
      301 tattacatcc acttaataca ggtgtcataa ttagaaatac tctacaacaa gatattccaa
      361 agatagtaaa cttacaagag gaatcatttc cgtatctatc aagatatggt aacatctggc
      421 atcctaacga acttcaaaac catcttaaag tgtttcctga aggtcaattt gtcgctgtcg
      481 agcctgatgg tactgtagtt ggttctgcaa gcactctgat aatctctctt aatccagaat
      541 atgcagaaca tacatggaat caaatcactg caaatggttt atttacaaat cacaatccaa
      601 aaggagatag cctatatgga gcagatatct ccactcatcc aaagtacaga catgaaggca
      661 taggcaagat gttgtatgat gcaagaaagc aattagtgac acaattgaat ttacgaagaa
      721 tgatagcagg aggaagattg tttaactatt gtgaatattc caacaggatg tcagcattag
      781 aatatgcaca aaaggtaatt agtagagagt taagagatcc tgttctgtca tttgaattag
      841 acaatgaatt taaatttatc aaaatccttc caaattactt ggatgatgtt cgttctttaa
      901 actatgctag ttttatagaa tgggttaatc caaacatagt aaaatagcag caaaaacctt
      961 ctcgaagctc aaattaagaa tggttatgaa agtttaagta tgatctttaa aggcgtcggc
     1021 agtattgtat tagacccgta ctttaatcaa aacaagaact atcgccaaat agctaaagtg
     1081 tagatcttcc atatggtagg catatggatt aaacaaaata aatgaagtaa caaaagacta
     1141 tatgatttta ttcagccgcg ccaaggttgc ctcctgatga acttgaggat tgttgtgatt
     1201 gtagttgctc tattggtgct aatccttttg attttaacac ttggtctaat attgtcaggt
     1261 cgaatatccc tgacaggtct ggatgtggct tgcccttagc taacagtccc aggttgtagg
     1321 cattgttggc tgattgaaat agtgatagtt taagtgggtc gtatgtgaaa tcaatcattg
     1381 aaaaagcttg ttttagctcg tcttggggaa tagattttcc tgttagtttc ttgacttgtg
     1441 tattaaaatc ctgtacagct tcatccttgt ggttatttat ccatacagtt tcatttacat
     1501 gtgcagataa taatttactt gttatatcta gattgttctt aaggtaatcc gtacttacag
     1561 ctatattggc tgtcacaaat ttaccacctg gccatatgct tctctcatct aaaaatattc
     1621 ttccattagc ttcctttact aatctggtag cccatggttc aggcacccat gcaccatcta
     1681 attgcttctt taagaatagt gtgagtatat cggggttggc tattggtgtc aacactatat
     1741 taccaccttg atctgttgtt ttaagtccat ttattagtaa ataagatcta agagctatgt
     1801 cctgagtatt acctaattct ggagacgcaa gtcttttacc agctaaatct ttaggcgaat
     1861 tgatacctgc atcgtttcta actacaaatg atgcgcctcc actgcttgaa cccgcaatta
     1921 tctttagatc ctttccatcc gatacaacat agccattaat ggctggatta gggccaacat
     1981 atgttgcatc aattctctta gcaagtaatg cctcaatagc agatggacct gcgttaaata
     2041 cagttgtttg aacgtttatg ttattaccta atgctttctg aaaatctcca ttcccaaacc
     2101 caattactgc ctgagcgtga tttatgtttg gaaagtagcc tattctcaaa gtctttacag
     2161 aattatatcc agttgatgta ttgctgtttg ctgaagcgct ttgtgcaaat actgctggct
     2221 ttaatggagt tattacagct gtaactacta ttatcgcagc taaagttatc gtaagcttta
     2281 ttgcttgttg tcgttttttt atcattaaat atatcgataa gagatatgac ttggccgaat
     2341 attactgcta ctaaagatgc aaggaatgag aattatgtgc agatttgaac cataccatta
     2401 agggatatgc atttgcagta taatatttca atgtatagtt cttatgtatt actcattatt
     2461 ccgtgagtct ttaagaacct gatttgttgc tgtaatgttt tgtttgttat tcctttcgat
     2521 aataacacgt aacatta
//
LOCUS       DASQSJ010000155         2273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_497717, whole genome shotgun sequence.
ACCESSION   DASQSJ010000155 DASQSJ010000000
VERSION     DASQSJ010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497717"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1580
                     /locus_tag="VE223_03100"
     CDS             <1..1580
                     /locus_tag="VE223_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20608.1"
                     /translation="KMMSANTNKRNNNSDSSSSATSPFHQQQSQPSSVVKSFTARACQ
                     FMKDTEQHALQGVNPGGIYQAIWSRDASFILRSWFHSGNVHGVLQQISTIWSHQIVPG
                     KEKIIYGRGSPEMNYKPTIAKEDKQKVFEGALPTTMYQAGYSEVYGLNPDIDSTALMI
                     STTSWILNKILNENSKQQLSVASSKNSSRSYDDNNNNYYISEAKSMTSHARVIDFVVP
                     RMLKAIEHLLSRDIDDDGLLEQNHNEDWMDTGLRAGKIVYSQACMILALNNLSYLLSE
                     LNNHNESERMTKLATRTISAVEEKLWSENGRSYIDIQQSHHIGGPYRTLTQDVSLYLV
                     AISENTNSDSLRSHEPPHRNSDERTRTASHQHQQQQQQEHPLKQQKDIYPQKNLDQLL
                     KRANNTLDAISNRVWLDGWPTNVETLLKSSGPWHLKPYFYHNRTFWPWITGIEILARS
                     RFKRFEECNALLSKLASEGKLHILTFYEWVNPKTGHGGGAYPFRTGICTVRMAIDHII
                     SGIEQNKTKCESQNNKY"
BASE COUNT          825 a          385 c          442 g          621 t
ORIGIN      
        1 aaaaaatgat gtcagcgaat actaataaga ggaataataa tagtgattct tcctcttctg
       61 ctacttctcc tttccaccaa caacaatcac agccatcatc ggtggtgaaa tcttttacag
      121 ctagggcatg tcagtttatg aaagacactg aacaacatgc tctgcaggga gtaaatccag
      181 gtggaatata tcaagccata tggtcaaggg acgcatcttt catactcagg agttggtttc
      241 actctgggaa tgttcatgga gtgctgcagc agatttctac gatatggtct catcaaatag
      301 tacctggcaa agaaaaaatc atttatggaa gaggctcgcc agagatgaac tacaagccaa
      361 ctattgcaaa agaagataaa cagaaggtgt ttgagggagc acttcctaca acaatgtatc
      421 aggcaggcta tagtgaagtc tatggactaa atcctgatat tgattctaca gcattgatga
      481 taagtacgac atcttggatt ctaaacaaga ttttaaatga aaatagtaaa cagcagctat
      541 ctgtagcttc atcgaagaac tcatcacgat cttacgatga caataataac aattattaca
      601 tatcagaagc aaaatcaatg actagccatg ccagagtaat tgattttgta gttcctcgta
      661 tgcttaaagc aattgagcac ttgctcagca gagatataga tgatgatgga ctgctagaac
      721 agaatcacaa tgaagactgg atggataccg gtcttagggc tgggaaaata gtatatagcc
      781 aagcatgtat gattcttgca ttaaacaatc tctcttactt gttatcagag ctaaataatc
      841 ataatgaatc tgaaaggatg accaaactgg caactaggac tatttctgca gtagaagaaa
      901 aactatggtc tgaaaatggc cgctcctata tagatataca acaatcacat catataggtg
      961 gtccctatag aacactaact caagatgtct cgctgtattt agtagctatt agcgaaaata
     1021 ctaatagcga tagtctcaga tcgcatgaac caccacatag gaatagtgat gaaagaacaa
     1081 gaactgcgag tcaccaacac cagcagcaac aacaacagga gcatcctttg aaacaacaga
     1141 aggacattta tccacaaaag aacttggacc aacttctcaa aagagccaat aatacattag
     1201 atgctatttc aaatagagtt tggctagatg gttggccaac aaatgtggaa acgttattga
     1261 agagttctgg gccatggcat cttaagccat atttttacca caacagaact ttttggccct
     1321 ggattacagg aatagagata cttgctcgga gcagattcaa aagatttgaa gaatgcaatg
     1381 ctcttctttc caaattggct tcagagggta aactacatat attaacattc tatgaatggg
     1441 taaatcctaa aacaggacat ggtggaggag cttatccctt taggacaggc atttgtactg
     1501 ttagaatggc catagatcat attatcagcg gtatagagca aaacaaaaca aaatgcgaga
     1561 gccaaaataa taaatactga gtgtaattat cgtattgcta aaataaaatg atctgtcatt
     1621 atcatcatag gccgaaacta ggatatagtg tcattcctcc atcaacataa tcagttttaa
     1681 ctaaggtaac aaaatgtttt acagacccgt tattggcatt gaagtatttt agcattaatt
     1741 gtgaaaaata tagcttagtt atttctgata ttggtatgcc tagtatgaat ggttatgaat
     1801 ttgtaaaaca ggtaaagaaa attaatccaa aagtaaaagt atgggtgcct ttgaatagat
     1861 catgtgttgc cagaactgaa gatataagct tttgtacaaa aaccattctc gaatttcaaa
     1921 ctgtataata ttattgaaag atattttagc gctggtaaca ttggcaaaga tgatattaga
     1981 taggagtaat acgaacggag ccaaaacact taagcagaaa agaatgagaa attgaagcta
     2041 ttaaatgagg attattatgt gggtctacgg ccacaggttt tataaatata acagaaaata
     2101 tcgatatggg ccatgtggca tttgccatca tagttaatgc agataataac aaaatggaat
     2161 gaataccatt ttgactgttc gttgagcacc tgcaagtgaa atctcatatt aaagagtaag
     2221 agcgatgata aaaattgatt acaacgtcta cttgaaataa gcacatacta cag
//
LOCUS       DASQSJ010000156         2469 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_20146, whole genome shotgun sequence.
ACCESSION   DASQSJ010000156 DASQSJ010000000
VERSION     DASQSJ010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2469)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2469)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20146"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VE223_03105"
     CDS             <1..211
                     /locus_tag="VE223_03105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20609.1"
                     /translation="KLHKHTREAGNHQGGEEERMSAPSAAVIIPKKSEKSKSKSRKNK
                     KDTSTIASISKQLEGRTATIDKMFF"
     gene            complement(170..1255)
                     /locus_tag="VE223_03110"
     CDS             complement(170..1255)
                     /locus_tag="VE223_03110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20610.1"
                     /translation="MASKMKPAYSDDVNVSNNYRTNASSSSYDDDKIIETAAASLRQS
                     YHRLLDTIIPHENALTIAKYIMSMRTEINLSDHYRQDLIVVLTRISRYTSSNNNNNKA
                     FKMMTRQDILDFLNSFRKPDSSDPLHKWIGTYNTYRMHLLRFFKWLYYPDIEPNKRPK
                     PKVIDNIPQLKRKEQSIYRPTDLWTIQDDLLFLRYCPSKRIRCYHAMSRDTGCRPHEL
                     LKLRIKDIAFRSICNRQYAEVLVNGKTGSRHIPLIDSIPYIKDFLDHEHPQPNNPNAI
                     FLCGNRRSLGRMLSTSSLENIYAHYKSELFAKILLEDPNTPMEDRQKIKELLKKPWNP
                     YIRRHSALTEKSTILKEHLINCSSPSF"
     gene            1342..2091
                     /locus_tag="VE223_03115"
     CDS             1342..2091
                     /locus_tag="VE223_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20611.1"
                     /translation="MVYRNLVAAIDKVFLIWQVAFPVVYIFVAGYAYTAMMGNQDIKI
                     GALSVTYTSFLTAGMIGFNVMNGSTVAGSIIWNDKRNGMFQQLLVMPFSKVQYIIGNL
                     ITIILIGLASAAVIVIIGFPTMFGHVNITLWSIPYTVYSLVVGSIFFGSFTITLATKI
                     KSSEGYNVISNGLFLFFAFVSSSFYPAQGLPEPLYVAFYINPLTYIVDISRAGIFSHV
                     NGFTNIEAIIISFLAAIVFLIATRSMVRMKI"
BASE COUNT          741 a          402 c          469 g          857 t
ORIGIN      
        1 gaaactacac aaacacacta gagaagcagg gaaccatcaa ggaggggaag aggagagaat
       61 gtcagcacca tctgctgctg ttattattcc aaagaaatct gaaaaatcaa aatcaaaatc
      121 tagaaagaac aaaaaggata cctccacaat agcatctata tctaagcaat tagaaggacg
      181 gactgctaca attgataaga tgttctttta gaattgtaga tttctctgtc aatgcactat
      241 gtcttctaat atatggattc catggctttt tcaaaagctc ctttattttc tgcctatcct
      301 ccattggagt attcggatct tccaacagta tcttggcgaa aagctctgat ttgtaatgtg
      361 catagatatt ttcaagagaa cttgtagaaa gcattctgcc taggctcctt ctgttaccac
      421 ataggaatat agcatttgga ttattgggct gtgggtgctc atgatcaagg aagtctttga
      481 tatatggaat tgaatcaatc aatggtatat gtctgctacc tgtctttccg ttaactaata
      541 cttcggcata ttgcctatta caaatggatc tgaatgcaat gtctttgata cgcaacttta
      601 gcagttcgtg tggcctacag ccagtatccc ttgacattgc atgataacat cttatcctct
      661 ttgatggaca gtaccttaaa aatagaaggt cgtcttggat agtccataga tctgtaggcc
      721 tgtagattga ctgctccttt ctcttcagct gtggaatatt gtcaataact tttggtttag
      781 gccttttatt cggttcgata tccggataat ataaccattt gaagaatcta agcaaatgca
      841 ttctgtacgt gttataggtt ccaatccatt tatgaagagg gtctgaagaa tcaggcttgc
      901 gaaaactatt aaggaagtca agaatgtcct gtcttgtcat catcttgaat gctttgttat
      961 tgttattatt actgctagtg tatcttgata tcctggtaag aactactatc aaatcctgtc
     1021 tataatgatc tgatagattg atctctgtcc tcatcgacat aatgtacttt gctatggtta
     1081 gggcattttc atgtggtatt atagtgtcaa gcaatctgtg gtatgattga cgaaggctag
     1141 ctgcagcagt ctctattatt ttatcatcat catatgatga cgaagatgcg tttgtgcggt
     1201 aattattaga gacatttaca tcatcagaat aagcaggttt catcttggaa gccatttgtt
     1261 gttagtagac ttttagtcaa acgtaagata taagtcacta ttatatacat actaatgttg
     1321 ataatagaca gaatattatt attggtatac agaaacctcg ttgctgctat tgacaaggta
     1381 ttcctgattt ggcaggtggc ttttcctgta gtttacatat ttgtagcagg atacgcctat
     1441 actgcaatga tgggaaacca agatattaag atcggcgctt tgtcagttac atatacttca
     1501 tttctaactg ccggtatgat cgggtttaac gttatgaatg gtagtactgt agctggtagc
     1561 attatttgga atgataagag aaatggtatg tttcagcagt tactagtcat gccatttagt
     1621 aaggttcagt atattattgg caatcttata acaattatcc taattggact tgcaagcgcc
     1681 gcagttattg ttataattgg ttttccaact atgttcggac atgtgaatat taccttatgg
     1741 agcataccct atactgtata ctcactagta gtaggctcaa tattctttgg ttcctttacg
     1801 ataactttag caacaaagat caaaagtagt gaaggataca atgtaattag taacggtctt
     1861 ttcctgtttt ttgctttcgt tagctcctct ttttatcctg cgcaaggact acctgagccc
     1921 ttatatgtcg ccttttatat taatccgttg acatacatag tagatattag cagagccgga
     1981 atattttctc atgtaaatgg atttactaat attgaagcaa ttatcataag ttttcttgca
     2041 gccatagtat ttctaattgc gacaagatca atggtaagga tgaagatata aaacgaatct
     2101 atgtattttt ctgtgccatg atacattttt accacagttt ccttggttgg ataaatcctc
     2161 atgtgtgata ggaacttttc tttttgtatt cattaaacga tgctgtattc ataattttag
     2221 cgaaattact tggtcaaagt gaaggtcgcg aattcataat aaagtgcaag agcgcattta
     2281 ttattatagt tattatcatt attgttattg ctggtttttg gatccaatat ctccatatta
     2341 agctggtctt ttataatgac tacattataa ggaaaatgag aaaaaaagtg agtgtcgata
     2401 gagtttaatg atctatgtat aaataatatt gaataacagt ttaaggatgg atattattat
     2461 atgacaaaa
//
LOCUS       DASQSJ010000157         3530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_566931, whole genome shotgun sequence.
ACCESSION   DASQSJ010000157 DASQSJ010000000
VERSION     DASQSJ010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3530
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566931"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(220..360)
                     /locus_tag="VE223_03120"
     CDS             complement(220..360)
                     /locus_tag="VE223_03120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20612.1"
                     /translation="MIFSSYYYSSVTVFLILTPVALAAGRLIGGLGRQMPDRHSNAHS
                     GS"
     gene            484..1035
                     /locus_tag="VE223_03125"
     CDS             484..1035
                     /locus_tag="VE223_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20613.1"
                     /translation="MYSEYVIKGPKPWEARVYLGEGGKEIAEIKKGEDQKSFKLLAKD
                     GREWILTKSVYGKFRPFSMSVMERGKDKDQTNKEILTIIEHIFRHGDKFYMLTNHPEG
                     KHWNEYLSGSRYISRLDNFPYSNMHELDYHIKHKLRRFRGKPVGEASGLGIHDGHCVR
                     IDNELKDISLPLAVSSYLLYSTA"
     gene            1216..1488
                     /locus_tag="VE223_03130"
     CDS             1216..1488
                     /locus_tag="VE223_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20614.1"
                     /translation="MGNGNTSNIISTDKQYPKLSKATSGYLEIEHFKNADLHSGYFCY
                     NCTYFIKPNHCAIVDDSGPDVYNKESGVIAPYGLCTLWDPNEQEIR"
     gene            1534..1905
                     /locus_tag="VE223_03135"
     CDS             1534..1905
                     /locus_tag="VE223_03135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20615.1"
                     /translation="MSKITDKIKEKVGAIDNLTKFQKFSKLRASYIEYDKFADSNLHE
                     GYFCYNCIYWINAGGGKCMLVETEGPDVLGKVSEVIAPHGCCSGYEANYNKLHDTRNP
                     SEAQGVDPEKNKDKVTTADVT"
     gene            2132..2359
                     /locus_tag="VE223_03140"
     CDS             2132..2359
                     /locus_tag="VE223_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20616.1"
                     /translation="MMLSNHGRTILYTVIVISATLIASFFTANFIHEALAQGNTTKTN
                     PTNATSPGGAQSSGSAPGNSPSGSSSSSSGY"
     gene            complement(2532..3197)
                     /locus_tag="VE223_03145"
     CDS             complement(2532..3197)
                     /locus_tag="VE223_03145"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HZC20617.1"
                     /translation="MNLKRERKYDRISTKRPKWEIHAYFLDACNCDWGCPCQFNAKPT
                     HSNCEGVAGYHILNGSYDSNRVKLDGFNMALIASWPGPIHEGHGEACYYIDNRTDEEQ
                     FEALSNIITGKAGGGPFALYASTIEDFQEPKRASVKFKAKSVRSYVKVGKDIAEAWLE
                     PIRNPVTGKVHRAIIEIPEGFESNRMDQASTKKLIANDIDYLSFRYEGTYGSFSQNTW
                     KGP"
BASE COUNT         1179 a          645 c          648 g         1058 t
ORIGIN      
        1 tgctgcatat atgagtgagt cgcaacattc attgccatta taatcgttat cataattcac
       61 attagtagat ttctcgtgat acaaggttat tgataaaggt ctcaacaaaa caattacaac
      121 aggaccaggc tgaacttaga tggaaatgtg tttgtaactg atagattagt tataataaga
      181 taaatcacga tcacatcggt agttactgcg tctgagatgt taactgccgc tatgagcatt
      241 gctatgccga tctggcattt ggcgccccag cccgcctatt aaccgtcctg cggctaatgc
      301 cacgggagtc aagatcaaga atacggtgac gctgctgtaa taatatgaac tgaatatcaa
      361 taacaccata ttcatagaag tgaactaagc ttcaaaacat cgaaaaagag agttttgaca
      421 actggatagt atcgtagaag gaaaaaacaa tataaaaaag cacccttacg gagttatgtg
      481 caattgtatt ccgaatatgt cattaaaggc cccaaacctt gggaggccag agtatatcta
      541 ggagaaggtg gcaaggagat tgccgaaata aagaaaggag aggatcagaa gagctttaaa
      601 ttattagcca aggatggacg cgagtggatt cttactaaga gtgtctacgg caagtttcga
      661 cctttttcaa tgtctgtaat ggaacgaggt aaagacaagg atcaaactaa caaggaaata
      721 ttaactataa tcgagcacat ctttagacac ggggacaaat tctatatgct tacaaaccat
      781 cccgaaggaa aacactggaa tgagtaccta agcggatcca gatacataag caggctagat
      841 aactttccat actctaatat gcatgaatta gattatcata taaaacataa acttaggcga
      901 tttcgaggca aacccgttgg tgaagcatca ggattaggaa tacatgatgg tcattgtgtt
      961 aggattgata atgagctaaa agatatatca ttaccgttag ccgttagttc atacttacta
     1021 tattcaacag cttaataaat tacttttaca ataacaaaag atacaacaac tacttctcct
     1081 agcagtaacg ctactactgg taggtctcca ggtattccac gaatgcctta gatatgataa
     1141 taatgttcga tataatcgca gagacgagga agcagttctt atattataag atcctataca
     1201 gtgatggcga gataattggg aaatggcaat actagcaaca tcatttcgac tgataagcaa
     1261 tatccaaaat tatcaaaggc tacttcaggc tatttagaga tcgaacactt caagaatgca
     1321 gacctacata gtggctattt ttgttacaat tgtacttatt ttatcaagcc aaatcattgt
     1381 gcaattgttg atgacagcgg acctgatgta tacaataaag agtcgggagt tatagcacca
     1441 tatggactat gtaccttatg ggatcctaat gaacaggaga tacgctaaca tgaaaagaaa
     1501 agaggaaaaa agaaaaggag cgaaataaga caaatgtcta agattactga caaaataaaa
     1561 gaaaaagtag gagcaattga taatcttaca aagtttcaga aattcagcaa gctcagagca
     1621 tcatatatag agtacgataa gtttgcagat tctaatctgc atgagggata tttctgctac
     1681 aactgtatat actggattaa tgctggtggt ggaaaatgca tgcttgtaga gactgagggt
     1741 ccggatgtat taggaaaagt ttcagaagtt attgctccac atggatgctg ttcaggttat
     1801 gaagctaatt ataacaagct acatgacact aggaatccaa gtgaagccca aggcgtagat
     1861 cctgagaaaa ataaagataa agtgacgact gcggacgtaa cataaaaatt ccaaaccgac
     1921 taacagccgt tttgcggcat ctctttattt ctatgagtca aggtatcata ggcatgtttg
     1981 gatagacgct tgctgttact gttacggaat gcaattgcat ttaccttaac ttcatgcttc
     2041 atatcataca ttgcaagaca ttttcacaca tttgaattcc atgttgtaat gaaaattgca
     2101 aatctttaaa tttgatacaa tatagattag cttgatgtta tcaaatcatg gaagaacaat
     2161 cttatataca gtaatagtta tttcagcgac actcattgca tctttcttta ctgccaactt
     2221 tattcatgag gctttagcac aaggcaatac gactaaaact aatccaacta atgccactag
     2281 cccgggtggt gcacaaagta gtgggagtgc tcctggcaac tcgcctagtg gaagcagttc
     2341 atcaagtagt ggatattagt caataaattc tacatttatt ttattttttc gtactagaga
     2401 tatcatggaa aagtctgtct gtccttgatt gtgcattata gtctgaattg atgaaaattc
     2461 attgctttac aagataaaga tataacttta tctttgtagt atcataggtt tcctcctgat
     2521 ataatatata ttcatggtcc cttccaagta ttttgtgaaa aactaccata agtcccttca
     2581 tatcgaaagc tcagataatc aatatcattt gcaataagtt tcttcgtaga tgcctggtcc
     2641 attctatttg attcaaagcc ttctggtatt tcaataatag ctcgatgtac tttacctgtt
     2701 actggatttc gtataggttc aagccatgct tctgcaatat cttttcctac ttttacgtaa
     2761 cttctaacac tctttgcttt gaacttaaca cttgctctct ttggttcttg aaaatcttct
     2821 attgtgcttg catatagtgc aaaaggtcct cctccagctt tacctgtaat aatatttgac
     2881 aaggcctcaa actgttcttc atctgttcta ttgtctatat agtaacatgc ttctccatgg
     2941 ccctcatgga taggacctgg ccaagaagca atcaatgcca tattaaatcc atctaattta
     3001 actctattac tgtcataact accatttagt atatggtaac cagcaactcc ttcacaatta
     3061 ctatgagtag gtttagcatt gaactggcaa ggacatcccc aatcacaatt acaagcatcc
     3121 agaaaatagg catgtatttc ccattttggt cttttagttg atatcctgtc atacttcctt
     3181 tctcgcttta ggttcaataa gagacactta aaatgagcac agcatcatct atatatgtat
     3241 aaaatgcctc ctggtctttc tatcattcgt ccaacaatgt aggaacgtta taggtagcaa
     3301 caacatttac caatcctccc tcagcatttt cctttatcag aaattcaaag atgaatttat
     3361 tgaagtatgc aaatacccgc tccgatatga cattatatat aattgcttac cagaaatagc
     3421 agagtaataa taatgaatag tcagaggtgt taactaaaaa ggggctctac aatgtagcct
     3481 tcgatagata caattgattt gaaggctatg ggtaaatctc gttcatcata
//
LOCUS       DASQSJ010000158         2131 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_408280, whole genome shotgun sequence.
ACCESSION   DASQSJ010000158 DASQSJ010000000
VERSION     DASQSJ010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408280"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VE223_03150"
     CDS             <1..326
                     /locus_tag="VE223_03150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20618.1"
                     /translation="FGEDTIVKFNFDKEGKIWKKIPNAVADHYTKIDNNRKYLRTGII
                     VRSEPQVISIPKDVQIQQGHVVRKCHAFTKKQVIKTLLLVPIYEAYWAFKKNFWFTLA
                     YFRLI"
     gene            complement(1031..>2131)
                     /locus_tag="VE223_03155"
     CDS             complement(1031..>2131)
                     /locus_tag="VE223_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20619.1"
                     /translation="GRFIRNSFFEETCWLGYYPEQLGYESAIIHEASRCGYSYKTLDY
                     IKFEQIKPYCQTQKIYELGVSMRTLGYHPLFVLARFLKYIITGEVIGRRGSICMIYFY
                     MSYSPKSVGYDKMYDQNLRRYVRSYQIKKLKGILNHWFRTSPGIQYAISPNGFLSLLY
                     FIYCRKVRRQHTILFQGKTYRYFDTDKTWYNERAVEIPIIMEWVRKYLGKNILEIGNV
                     LSYHVRFEHDIIDKYEIAQGVTNADVVDFMSEKKYDLIVSISTLEHVGWDEKPRDNMK
                     ILRAIENLKTLASPGKTIVITLPLGYNSALDNLLKEGAILFSKQYYLLRISKGNVWRE
                     ASWEDVQDATYNTPLPFANALLIGIITVEPQI"
BASE COUNT          678 a          394 c          398 g          661 t
ORIGIN      
        1 agtttggaga agatacaata gtgaaattta actttgacaa ggagggcaag atatggaaaa
       61 agataccgaa tgctgtagct gatcattaca ctaagataga taataataga aagtacttac
      121 gaactggtat aatcgttagg tccgagccgc aagtgatcag tatccctaag gatgtgcaaa
      181 tacagcaggg acacgtagtt aggaaatgtc atgcttttac gaaaaaacaa gtaattaaaa
      241 cattattgct ggttccaatc tatgaagctt actgggcttt caagaagaat ttctggttca
      301 ctctcgcata cttcaggcta atatagcacg gtgtttgtaa acgcaaatcg ctttatttag
      361 atacctaaac gaacaacatg ggttgtgcta atgtataaaa gctatcttgg ttcttattac
      421 aaacgaacct atctttaatc gtagaaatat cctataagcg atgtactctt gcgtaaggta
      481 aggcaagaga aattagttcc atggacttgc aaaaaattct tgaacaagca tataattatg
      541 actaacttgg acttgccata tcaacagtag tatcgaatcg aattacggtt cagtacttcc
      601 atacgctatg ttcctgcttg aagtctaaaa gtgtttctaa aagaagtatc attgtatatg
      661 gtgtgcaggc atagacataa attatttata ctgcagaata ctacaaaaat cgtgttagtg
      721 aatgggtgcg gacatgttgt tcatccactt aattgtacac taagagtaaa acatgggata
      781 ttctgatttt catacattgg acttaaattg cgtgtaaaat ggtactatca aattgaatgt
      841 aatgcatcta gccaatccca tcagaataaa ttgggcacta agtgtactac gctagaaccg
      901 tctaacgttc gtggggcata gcgaaggtgc cgaatgagta actcaacgaa aaggtttttc
      961 tggcatttcc taatcgattg ttttctgctt tagttatcta caatcacaat gaatacttcg
     1021 ataacggatt ttagatttgt ggttcgactg taataatacc aatgagcaaa gcattagcaa
     1081 atggcaaagg tgtattatat gttgcatctt gtacatcttc ccacgaggcc tctctccata
     1141 cattgccttt agagattcgc aatagataat attgtttaga gaagagtatg gctccttctt
     1201 tcaataggtt atccaaagca gaattatatc ccagaggaag ggttatcaca attgtcttac
     1261 ctggagacgc gagagtcttc agattttcaa ttgcacgtag tattttcata ttgtcacgag
     1321 gtttctcgtc ccatccaaca tgttcgagag tagatatgct cactattaaa tcatatttct
     1381 tttctgacat aaaatccaca acatcagcat tggttacacc ttgtgcaatt tcgtacttgt
     1441 ctataatatc gtgctcaaac ctaacatgat atgataggac atttccaatc tctagaatat
     1501 ttttgcctag atactttctt acccattcca ttataattgg aatttctact gctcgctcat
     1561 tgtaccatgt cttgtcagta tcaaagtagc gataggtttt tccctgaaac aggatcgtgt
     1621 gctgtctcct aacttttctg caataaataa aataaagtaa gctcagaaat ccattaggag
     1681 aaattgcata ctggatacca ggagaagttc gaaaccagtg gttcaaaata cctttcaatt
     1741 ttttgatttg gtaagaccta acgtatcgtc gaagattctg atcgtacatc ttgtcatagc
     1801 caactgattt aggggaataa ctcatataga agtaaatcat acagattgaa cctcgtcttc
     1861 caatcacctc gcccgttatg atatacttca agaatcttgc gagtacaaag agtggatggt
     1921 agcctaacgt acgcatgcta actccaagct cataaatctt ctgcgtttgg caataaggtt
     1981 ttatttgttc aaatttaata tagtccaaag ttttataaga atagccgcag cggcttgcct
     2041 catgtataat agcagactcg tagcctagtt gctccggata ataaccgagc cagcaggtct
     2101 cttcgaaaaa ggaatttctg ataaatctcc c
//
LOCUS       DASQSJ010000159         3127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_566969, whole genome shotgun sequence.
ACCESSION   DASQSJ010000159 DASQSJ010000000
VERSION     DASQSJ010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3127
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566969"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VE223_03160"
     CDS             complement(<1..261)
                     /locus_tag="VE223_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HZC20620.1"
                     /translation="MMKAVSVKGKGLISVNEVAAPKLMGDGDVLIKMHACGVCGSDLE
                     KVYGQYGMSSAKLGHEPSGEIINVGKSVKNLDPGDRVFIHHHV"
     gene            702..2393
                     /gene="ilvB"
                     /locus_tag="VE223_03165"
     CDS             702..2393
                     /gene="ilvB"
                     /locus_tag="VE223_03165"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HZC20621.1"
                     /translation="MVEMTGAKALICALEKEGVDVVFGLPGGANLPIYDALVDASSLR
                     HILVRHEQSAAHMADGYARIKRKAGVCFATSGPGATNLVTGIATAYSDSSPIVAVTGQ
                     VQLSMIGKDAFQETDIIGVANPCTKYAFQPRTASEIPETVKKSFYIAESGRPGPVLID
                     VPKDVQQESADMKFPELIKVRGYNPVVDADLSQIGKAEQILLKAERPIIMAGGGVILS
                     GAFSELQALSELLMIPVVTTFKGKGAFPENHPLAMGPIGMHGHAEANKIILEADCIVA
                     VGARFSDRSVGRFDEFGKGMSIIHMDVDPAEIGKNKSVDVAVVGDVKSSLRTLIKMLP
                     KKIVRNDTDNPWMKRRKELIDYYAEALKDYSRELTAKKALKKLREILPANAITTTEVG
                     QCQMWASLHFDVISPGTFFSSTGLGTMGFGFPASIGAKAARPVVPVVDIAGDGSFNMT
                     ENSLAVSVLDNLPVIVFLMNNYTLGMVAQWQRTFYNRRYMGVHQHNCPDYTKIAEAYG
                     AQGIKVHSLDELEKAIKSALKTEVATVIDIPIDPEEDVYPFVAPGTGLKDMVTGA"
     gene            2404..2937
                     /gene="ilvN"
                     /locus_tag="VE223_03170"
     CDS             2404..2937
                     /gene="ilvN"
                     /locus_tag="VE223_03170"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HZC20622.1"
                     /translation="MSAATATTTITNGKIMPLYILSALVEDKPGVLFRVTNLFRARNF
                     NIESITVGSTEQADLSRMTITTKSDEKTLDQLVKQLRKLIDVVEVKVLDTGNTVYREL
                     ALIKMRAADPTTRMEITNFASIFRANILDIGKETIIVELTGTPDKIDAFKNLVDHYGI
                     TQLARTGVSALPRGVEV"
     gene            2938..>3127
                     /locus_tag="VE223_03175"
     CDS             2938..>3127
                     /locus_tag="VE223_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019707.1"
                     /note="catalyzes condensation of pyruvate and acetyl-CoA
                     to form (R)-citramalate; functions in isoleucine
                     synthesis; belongs to the alpha-IPM synthetase/homocitrate
                     synthase family; it is difficult distinguishing these
                     proteins from enzymes in that family; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HZC20623.1"
                     /translation="MSDYIEKVRIFDTTLRDGEQTPGISITPEQKVQIANKLDDLGVD
                     AIEAGFPIVSQGEIEAIKT"
BASE COUNT          994 a          570 c          693 g          870 t
ORIGIN      
        1 aacgtggtga tgaatgaaaa cacgatcacc cggatcaagg ttcttcacag atttccctac
       61 atttattatc tctcctgaag gttcatgtcc aagtttggca gaagacattc catattgacc
      121 gtatactttc tcgagatcag aaccacatac tccacatgcg tgcattttaa taagaacatc
      181 tccatctccc attaattttg gagctgctac ttcgttaacc gaaatcaaac ctttgccttt
      241 tacagagaca gctttcatca tcaatgaatt gaattcgagt ataacaaata cgtttggtca
      301 atctgagctg tagtatctgc gttaaaaagt gcatgatggt aattgagtga gtggatctat
      361 ctgattcaaa gagaactgtt gaatgatttt tgatatattc tagttatgta aagtatatgc
      421 ctaaagatat tgtatatcat gatgagtttg atgatgatga caacaatatg tataatccta
      481 ttcatcactg cgtttcgata tattttggct ttctctaggc aaatctttat aaattgtgtc
      541 attgcaggtt aacaataatg ccttgggcta aaggtgaaaa gttttgtata acttctccct
      601 aggatactac tgcaactgcg tttgtatgct gctgctctag gtcaaactag tgtgtagttt
      661 tggcagggca tttatataaa ataaaaaggt ggaatatata aatggtagaa atgacgggtg
      721 caaaagcact aatttgtgcc cttgaaaagg agggcgtaga tgtggttttc ggacttccag
      781 gtggagcaaa tcttcctatc tatgatgccc tagtggatgc atcttctctt cgtcacattc
      841 ttgtccgtca tgaacaatca gctgcgcaca tggctgatgg ctatgcaagg ataaagagaa
      901 aggcaggagt atgttttgct acttccggtc cgggcgctac caaccttgtt acaggcattg
      961 ctactgcata ttctgattct tcaccaatag ttgctgtaac tggtcaagtg caattatcta
     1021 tgataggaaa agacgctttc caagaaacgg atattattgg tgttgctaac ccctgcacta
     1081 aatatgcttt ccaaccaagg acagccagcg aaattccaga aacagtaaaa aaatcattct
     1141 atattgcgga aagtggaaga cctggacctg ttctgattga cgttcctaaa gatgtccaac
     1201 aggagagtgc agatatgaaa ttccctgaac tgatcaaggt aagaggttat aacccagttg
     1261 tggatgcaga tctatctcaa atagggaaag ccgaacaaat tttactcaaa gcggaaagac
     1321 ctattataat ggctggagga ggggtaatac tttcaggtgc tttttcagag ctacaggcac
     1381 tttcagaatt gttgatgatt cctgtggtga ccacttttaa aggtaaaggt gcatttcctg
     1441 aaaatcatcc tcttgcaatg gggccgatcg ggatgcacgg gcatgcagag gcaaacaaga
     1501 taatccttga agctgattgc atagttgcag taggcgctag gttttccgat aggtctgtag
     1561 gaaggttcga tgaattcgga aaggggatga gtatcattca catggatgtc gatcccgcag
     1621 aaattggcaa gaataaatct gttgacgtgg cagttgtagg cgacgtcaag tcttcattga
     1681 gaacccttat aaaaatgctc cccaagaaaa tcgtaagaaa cgatacagat aatccttgga
     1741 tgaaacgaag aaaggagctg atagattatt acgcagaagc actcaaagac tattcgagag
     1801 aactgactgc taagaaagca ctaaaaaaat taagggaaat tttacctgcc aatgcaatta
     1861 caactacaga agtaggccaa tgtcaaatgt gggcatcatt gcactttgat gtaatttcgc
     1921 ccggaacttt cttcagctca acaggattgg gaacgatggg attcggattt ccagcttcaa
     1981 taggtgcaaa ggcagcgaga ccggtagtgc cggtagttga cattgcaggt gatggctcat
     2041 tcaatatgac agaaaattct cttgccgtgt ctgtcctcga taaccttccg gtaattgtgt
     2101 ttttaatgaa taattacacg cttggaatgg tagctcaatg gcagcgaaca ttttacaata
     2161 gaagatacat gggagtacac caacacaact gccctgatta tacaaagata gcggaagcat
     2221 atggcgccca gggaatcaag gtgcattcat tagacgaatt agaaaaggca atcaaatctg
     2281 cactcaaaac tgaagtagcc actgtaattg acattccaat tgatccagag gaagacgttt
     2341 acccctttgt ggctccgggt acgggtctaa aagatatggt tactggagcg tgacgttgaa
     2401 attatgtctg ccgcaacggc aactactact ataacaaatg gaaagattat gcctttgtac
     2461 atattatctg ctctagtaga ggacaagccg ggagtattat ttagagtaac aaatcttttt
     2521 agagctcgaa actttaacat tgaaagtata acagtaggat ccactgaaca agcagatctg
     2581 tcgaggatga caattactac aaaaagtgat gaaaagacat tagatcagct tgtcaaacag
     2641 cttagaaaac taattgatgt agtagaggtg aaggtacttg ataccggcaa tacggtttat
     2701 cgtgaacttg cattaattaa aatgagagcc gcagatccaa ctactcgcat ggaaataaca
     2761 aactttgctt ccatatttcg agctaatata cttgacatag ggaaagagac tattatagta
     2821 gaacttacag ggacacctga taaaatagat gcgtttaaaa atctagtaga tcattatggg
     2881 atcacgcaat tggcaagaac aggtgtttca gctctcccaa gaggtgtaga agtttaattg
     2941 tcagattaca ttgaaaaagt aagaattttt gacacgactt tgagggacgg agagcagaca
     3001 ccgggaatat ccattacgcc cgaacaaaag gtccagattg ccaataaact tgatgatttg
     3061 ggtgtcgatg caattgaagc gggttttcca atagtttctc agggtgagat agaagcgatt
     3121 aaaacta
//
LOCUS       DASQSJ010000160         4463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_458031, whole genome shotgun sequence.
ACCESSION   DASQSJ010000160 DASQSJ010000000
VERSION     DASQSJ010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458031"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VE223_03180"
     CDS             <1..187
                     /locus_tag="VE223_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20624.1"
                     /translation="KARQKIKAGIIAKQISTQLGGSGGGDDRFGQGGAGSNERSKDKI
                     EEALLSAEELVMKNITG"
     gene            196..3294
                     /gene="leuS"
                     /locus_tag="VE223_03185"
     CDS             196..3294
                     /gene="leuS"
                     /locus_tag="VE223_03185"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HZC20625.1"
                     /translation="MTNSTTIPPSRSSNNGDRATKTIDWNSIEEKRRQRWEEQKIFQT
                     DPHFGKKKYFITVAYPYPNSPQHIGHGRTYTLADTHARYMRMKGYNVLFPMGFHYTGT
                     PILGMSRRVAAGDKELLETFHNIHGVSYDIIETFVEPINIARHFHNEIKLGMKEMGYS
                     IDWRREFTTIDKVYSKFISWQFRILLKKGLIVQGSHPVGWCPNDQNPVSQHDTIGDIE
                     PDFNEYTVIKFRLEDSDGYIIPAATMRPETIYGVTNLWVNPELEYVKIQIDNEKWIVS
                     NDAARKLEFLNHKIAIQSTLKGKEIIGKNVKDPIKQVSIPIYPASFVDADNGTGIVMS
                     VPAHAPYDYQALEDLKNNASAISDINNEFRLKAEEIVKPITIIESEGHYSDISNNITP
                     AEEIIKRFKAKNQEDPELKRATEELYSREFYKGKMSHNAGRYAGMPVQEAKDKIKKEI
                     ITSGSADIMFELVTKPVKCRCGTECVVKLLNDQWFINYGDKRWKDRAHECINTMDIIP
                     EEIRQEFNYVINWLKERACARKSGLGTKLPWDQDWIIESLSDSVIYMAYYIIAKYVNG
                     NNNNNLPINSENIEDSFFDYILLGKGNAHQVAADCKIPTVLIDEMRNEFSYFYPLDVR
                     HSGRDLIPNHLSFFIFNHVAIFGRDNWPKQIVVNGSVLMEGKKMSKSLGNIIPLRSAI
                     KEYGADAIRLAMLISAELLQDADFSFDALKGIRSKLYDIYEMASECSIEKTKTGSAIT
                     ELEDRWLVSRLQYIVADITMSMEKLRVREALHSILYSLDQDLQWYRKRVKSKGRENSI
                     SAILVLFLETRIKMLAPFAPFISEEIWEKISGDSSNLSLSSPSSSSIIFAGWPQVDDH
                     RKDPVAEESESLIMNLVSDIQKIVKVTNITPTKIVIYTATRWKQKIYLQILVSMLLEG
                     KTNFGDIMRQLLNDVETASKAKNDPSLIKKMIEDILSDPIEARNRRLKLASDFDETFP
                     INDAKSLLSLESGNAQARIIIFPEEEEIGRKYDAHNSQKKPDPKSKAKFARPFKPAIY
                     IE"
     gene            complement(3323..3532)
                     /locus_tag="VE223_03190"
     CDS             complement(3323..3532)
                     /locus_tag="VE223_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20626.1"
                     /translation="MSKKIRMPGSVRAGLALLVVGAIFVGIGTYLNRGGFSLYGFIMV
                     VAGFSIYIISSVAVARKRKMREKRK"
     gene            4016..>4463
                     /locus_tag="VE223_03195"
     CDS             4016..>4463
                     /locus_tag="VE223_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HZC20627.1"
                     /translation="MKAFNGRAASEEYMSTHSLTFSTPEMTLKKFVLWLGEQVTNPSS
                     KEQVPRLMLYIEEKTTNNTIGKENPNLMPDIDDSFRPSGAVTEMYGEISSSPSTSTTS
                     PSLSYPTNDITLPKKGSIDKKISDSDTKFCFECGSNLKANSKFCRNC"
BASE COUNT         1593 a          775 c          858 g         1237 t
ORIGIN      
        1 aaaagcaaga cagaaaatca aggcaggtat catagcaaaa caaatttcaa ctcaacttgg
       61 aggttctgga ggaggggatg acaggtttgg ccagggcggt gctggcagta acgaaaggag
      121 caaggacaaa atagaagaag ctttactctc agctgaagaa ttggttatga aaaacatcac
      181 aggatagtga agagcatgac aaacagcact accatccctc cttcacgcag tagcaacaac
      241 ggtgatagag cgacaaaaac gatagattgg aattcaattg aagaaaagcg gcgtcaaaga
      301 tgggaggagc aaaagatctt ccagactgat ccacattttg gaaagaaaaa atatttcata
      361 actgtagctt atccttatcc caactctcct caacatattg gacatggaag aacttatact
      421 cttgccgaca ctcatgcgcg gtatatgagg atgaaaggtt acaatgtatt atttccaatg
      481 ggtttccact atacagggac acctattctt ggtatgtcac gcagagttgc agctggagat
      541 aaggaattac tggagacgtt tcataatata catggcgttt catacgacat aatagaaacc
      601 tttgttgagc ctataaacat tgcccgtcat tttcacaatg agatcaaact ggggatgaaa
      661 gagatgggtt attctataga ttggcggcgc gaattcacta ctatagataa agtatattca
      721 aagttcattt catggcaatt tagaatcttg ttaaaaaaag ggttaatagt ccaaggttca
      781 cacccagttg gttggtgtcc aaacgatcaa aatcctgtta gccagcatga tacaatcggc
      841 gatattgaac cagacttcaa tgaatacaca gtaattaaat ttaggttaga agacagtgat
      901 ggctacatca ttccggctgc aactatgaga ccagaaacta tttatggtgt aactaatcta
      961 tgggtcaatc ctgaacttga atatgtcaag atacagattg ataacgaaaa atggattgtc
     1021 agcaatgatg cggctagaaa attagaattt ctaaatcata aaattgcaat acaatctact
     1081 ctaaagggaa aagaaataat tggtaaaaat gtcaaagatc caatcaaaca ggtttctatt
     1141 cccatatatc ctgcatcatt tgtcgatgca gacaatggca ctggaatcgt aatgtcagtt
     1201 ccagctcatg caccttatga ttaccaagcc ctagaagatt taaaaaataa tgcttctgct
     1261 atcagcgata ttaataatga attccgatta aaagctgaag aaatagtaaa acctataacg
     1321 ataattgaat cagaaggtca ctatagcgat attagtaata atataacccc tgccgaggaa
     1381 atcataaaga gattcaaagc aaagaaccaa gaggatccag aattgaaaag agccactgaa
     1441 gagctatact ctcgtgaatt ttacaaaggg aaaatgtctc ataatgctgg cagatatgct
     1501 ggtatgccag tacaagaggc aaaagataag ataaagaaag aaataatcac atctggctct
     1561 gccgacataa tgtttgaatt ggtaacgaag cctgttaagt gtagatgcgg cactgaatgt
     1621 gtagttaaac tattgaatga tcaatggttt attaattatg gtgataaaag atggaaagac
     1681 agagcacacg aatgtatcaa cacaatggat ataataccag aggaaattag gcaggaattt
     1741 aactatgtaa ttaattggtt aaaggaaaga gcttgcgcaa gaaaatcagg actcggtact
     1801 aaattgccat gggatcaaga ttggattatt gaaagcctct ccgactccgt tatctacatg
     1861 gcatactata ttattgcaaa atacgttaat ggtaataaca ataataattt acccatcaat
     1921 tcagagaata tagaggactc tttctttgat tatatactac ttggaaaagg caatgcccat
     1981 caggtcgccg cagattgtaa aatccctacc gtattaattg acgagatgag aaacgaattc
     2041 tcatactttt atcctttaga tgttcgacat tctggaagag accttattcc aaatcatctt
     2101 tcattcttta tttttaatca tgtagcgatt tttggaaggg ataattggcc aaagcaaata
     2161 gtagtcaatg gctctgtatt gatggaagga aagaagatgt caaaatcgct tggaaatatt
     2221 atcccattgc gttctgcaat caaagagtat ggtgctgacg caattcgttt agctatgctg
     2281 atctctgcag agctgctaca ggatgctgac ttttcatttg atgcacttaa aggaattcgt
     2341 tccaaattat atgatattta tgagatggcg agtgagtgtt caatagaaaa gacgaagaca
     2401 ggaagcgcaa taaccgaatt agaagacaga tggcttgtca gtagattgca gtatattgtt
     2461 gcagatatta caatgtctat ggagaaatta agggtaagag aagcacttca ttccatacta
     2521 tattcgcttg atcaagactt acagtggtat cggaagagag tcaaaagcaa aggtcgagaa
     2581 aattctattt ctgctatttt agttctgttt cttgaaactc gcatcaagat gcttgctcca
     2641 tttgctccat ttataagcga agaaatttgg gaaaaaatta gtggtgatag tagtaattta
     2701 tccttatcat cgccatcgtc atcttcaatt atttttgctg ggtggccgca agtagatgat
     2761 catagaaagg atccagtagc agaagaatca gaatctttaa ttatgaattt ggtatctgat
     2821 attcagaaaa ttgtcaaagt tactaacata actccgacaa aaattgtcat atatactgca
     2881 acacggtgga aacaaaagat ctatctccag atacttgtaa gcatgttatt ggaaggtaaa
     2941 actaattttg gtgatattat gaggcagcta ctcaatgatg tagaaacagc gtcaaaagca
     3001 aaaaatgatc caagcttaat aaaaaaaatg atagaagaca tcctgtcaga tccaattgaa
     3061 gcaaggaata gaaggttgaa attagcatca gactttgatg agacatttcc tataaatgat
     3121 gctaaaagct tgttgtcttt ggaaagtgga aatgcacagg ctcggataat catattccca
     3181 gaagaggaag agataggaag aaaatatgat gctcataatt cacaaaaaaa acctgatcct
     3241 aaatcgaaag caaaatttgc tagaccattt aaacctgcaa tttatatcga ataataataa
     3301 gatatatggg aggcaatgat aattattttc tcttttccct catcttcctc ttccttgcaa
     3361 cggcaacgga agatattatg tatattgaaa atcctgcaac aaccattatg aatccataaa
     3421 gtgaaaatcc tcctctgtta agataagtcc ctatccctac aaatattgct cctacaacca
     3481 acaatgccag ccctgcacgg acagatccag gcatccgaat tttctttgac aattgtcctg
     3541 cctactatta agtatgcaca tgagttcatg ttaatatcaa ttacgtgtat catataggat
     3601 atagttaatg ttgattgcct tatatatcga ttaaaatgaa taatcgtttg agaaaaaaat
     3661 aatccgaact atatcaagtt acacagttac aaaaatcaga taaatgatga gataaactcg
     3721 acagtctgct ggcaaactga aggctcaaag cacaatgaga ctccaaacaa tgggttctgt
     3781 atcactagtt taccaagaaa gtgggggata tgaaaatgct aattataaac aataatggag
     3841 tagcaagttt tatattgaag caacttttag cgtaaagttc aactacatat ataggaaaca
     3901 ttgtctgtat tctacagaaa ttcctggata caattccaaa gaaagcaaag ttttgcagca
     3961 ggtgtggcaa gtcgcaataa ttaaaatata catcttccgc atattgcttc taacgatgaa
     4021 ggcattcaac ggtagagctg caagtgaaga atacatgtct actcactcac taaccttttc
     4081 cacaccagaa atgacattaa agaaatttgt tctatggcta ggcgagcagg tcactaatcc
     4141 tagcagcaaa gaacaagttc cacgactgat gctctatata gaggagaaaa caaccaataa
     4201 taccataggt aaagaaaacc ctaatttaat gccagatatt gatgatagtt ttagaccttc
     4261 tggtgccgtt actgaaatgt acggcgagat ttcttcttct ccttctactt ctactacatc
     4321 accatctctc tcttatccta ccaatgatat tactctacca aaaaaaggct caattgataa
     4381 gaaaatctca gattcagata ccaaattctg cttcgagtgc ggttctaatc tgaaggcgaa
     4441 ctcaaagttc tgcagaaatt gtg
//
LOCUS       DASQSJ010000161         3824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_367542, whole genome shotgun sequence.
ACCESSION   DASQSJ010000161 DASQSJ010000000
VERSION     DASQSJ010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3824
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_367542"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            227..460
                     /locus_tag="VE223_03200"
     CDS             227..460
                     /locus_tag="VE223_03200"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HZC20628.1"
                     /translation="MATQAYCVKCKTKRDMKNEKQVTMKNGRNATSGICSVCGTKMFK
                     IGGGGTTSTKRAKVAVKQATKKKAKKTLKAKKK"
     gene            complement(606..878)
                     /locus_tag="VE223_03205"
     CDS             complement(606..878)
                     /locus_tag="VE223_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20629.1"
                     /translation="MASTIFRVQSHKFSQDNIQTTLVCSRCDEVFSKEFPLDLEGQTI
                     EFKCPVCGAPGEADLPYKSAEEREEFEEDFEDVDEEEGGEDFDEEY"
     gene            complement(988..1590)
                     /gene="folE"
                     /locus_tag="VE223_03210"
     CDS             complement(988..1590)
                     /gene="folE"
                     /locus_tag="VE223_03210"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HZC20630.1"
                     /translation="MMNMQEEKKSKKNALNRKTIEKLIRKLLIELGENPNREGLVGTP
                     RRMAEMYEEIFAGYRMNSGLDISFSEESDTIIAKDIQFYSMCEHHMLPFYGKINIAYV
                     PSGRVFGISKLARLVEKYSRRLQIQERLTKQVADEIMQMGVKGVLITAEGEHLCMKMR
                     GVRNGSLIMTIAYRGILEQKRLREDTLSLIYTPKAELLST"
     gene            complement(1598..2329)
                     /locus_tag="VE223_03215"
     CDS             complement(1598..2329)
                     /locus_tag="VE223_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HZC20631.1"
                     /translation="MQRKTDKIQINEIFTSIEGEGIFFGTKTMFVRMAGCPLNCIWCD
                     TTYALPMQSGHEYTLDHVKSLISRNLQPNTYKVNFTGGEPLIQYHAIIELAKFIREEK
                     GLRTYIESSCFDSKKFEKVLPYIDICKIEFKMSDSKVIDTMHYENLLHNEIQCLALSI
                     ENHKTTYIKVVITGSTDIEEFKKLLKNVFMRFKTSNLAGFIIQPCYGTDEPTMERLFN
                     FYDIVYPIYHDVRIIPQLHKVIGIR"
     gene            complement(2663..3238)
                     /locus_tag="VE223_03220"
     CDS             complement(2663..3238)
                     /locus_tag="VE223_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20632.1"
                     /translation="MVILQNESQIIEARRAFGILFVTVAMAVAIGTILTEIAFLNNTS
                     LYYYAIIWLGSFSITFGAVFSKIRKSIRSIQGRMKNSMKWPTNAKAINGICWACPFAI
                     IPLFPHFYQFLVLLGIGAGNFSTYLFMKIYNSANYREQMMVGLISLAAIPIALGIDMT
                     FFISRQDVAIMISRISVSIAYGVAGIYALFR"
     gene            complement(3617..>3824)
                     /locus_tag="VE223_03225"
     CDS             complement(3617..>3824)
                     /locus_tag="VE223_03225"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HZC20633.1"
                     /translation="EMYGEISSSPSTSTTSPSLSYPTNDITLPKKGSIDKKIPDSDTK
                     FCFECGSNLKSNSKFCRNCGTKQE"
BASE COUNT         1196 a          687 c          667 g         1274 t
ORIGIN      
        1 gttaaagtgg ggaatggaat cgtgttgttt gaagctgtag acgaagtatc ttcggccatt
       61 atttttctct cagtctattt atttaatcag cagcaatatc tggatttctg gtaattgtta
      121 ttgcattgga ttgatttaca agtcttcaat ttttataaaa ttcttatgag ctactaggtt
      181 tgaatataag tttaagaaga agttggcttt aactattctg aaagtaatgg ctacacaagc
      241 atattgtgta aaatgtaaga caaagagaga tatgaaaaac gaaaaacagg taacaatgaa
      301 aaatggtaga aatgcgacat ccggtatctg cagtgtttgc ggaactaaga tgttcaagat
      361 tggcggagga ggtaccacgt caacaaagag ggccaaggtt gcagtaaagc aggccacaaa
      421 aaagaaagca aagaaaacac taaaagccaa gaaaaagtag cacagtggct gttaatctca
      481 ttagtccaga aacagctacc tgatttttat tttattagtt ttatttgttg aattaggaat
      541 ggcttttgtc tgtgaccaaa actacttatt gccaataaca aggggttttg catagataga
      601 gtaaactagt attcttcatc aaaatcttct cctccttcct cttcgtctac atcttcaaaa
      661 tcctcttcaa attcctctct ttcctcagca cttttatatg gaaggtcagc ttcacctggt
      721 gctccacaga caggacattt aaattctata gtttggcctt caaggtccaa aggaaattct
      781 ttagaaaaga cttcatcgca tcttgagcac actagagttg tctgaatatt atcctggcta
      841 aacttgtgtg actgcactct aaagattgta cttgccattc ttcctaccta taggaatttt
      901 tcttttttat aagccttgtc atcattgact taacactcaa gagagtgtca tgaattttat
      961 aaagatgaag aaattttcag gaaattttca agtagaaagt aattcagctt tcggagtata
     1021 aatcagagaa agagtatcct cccgaagccg tttctgctcc aaaatgccgc gataggctat
     1081 tgtcattatt aaactgccat ttctaacgcc acgcatcttc atacaaagat gttcaccttc
     1141 tgctgtaatc agcacacctt ttactcccat ttgcattatt tcgtccgcga cttgttttgt
     1201 caaccgctct tggatctgca gtctgcgaga atatttctca actagacgag ctaattttga
     1261 aattccgaaa actctgccag agggaacgta agctatattt atctttccat aaaatgggag
     1321 catatgatgt tcgcacatgc tataaaattg aatatcttta gctatgattg tgtcgctttc
     1381 ttcgctaaaa cttatatcaa gtccggaatt catccgataa ccagcaaaaa tttcctcgta
     1441 catctcagcc atacgacgtg gagtacctac aaggccttct cgatttggat tttctccaag
     1501 ttctatcaaa agctttctta tcaatttttc aatcgttttc ctgtttagag catttttttt
     1561 acttttcttt tcctcttgca tgttcatcat ttttgtttta tctaattcct attaccttgt
     1621 gaagttgagg tattattctt acgtcatgat atatcggata gacgatatca taaaagttga
     1681 atagtcgttc catcgttggc tcatctgttc catagcatgg ctgtattata aatcctgcca
     1741 gattggaggt tttaaaacgc atgaacacat ttttcagcaa ttttttgaat tcttctatgt
     1801 ctgttgatcc cgtaatgaca actttgatat atgtagtttt atggttttct atagataaag
     1861 caagacattg aatttcatta tgtaataagt tttcataatg catggtatca atgactttag
     1921 aatcactcat cttgaattct attttacaaa tatcaatata tggaagaacc ttttcaaatt
     1981 tctttgaatc aaagcaagat gattcaatat aagtccttag tcctttctct tccctgataa
     2041 attttgcaag ctcaataatt gcatgatatt gtatgagcgg ctctcctcca gtaaagttca
     2101 ctttgtaagt atttggttgc agatttcttg atataagact cttaacatga tcaagcgtat
     2161 attcatgtcc actttgcatc ggtaaggcat atgttgtgtc gcaccagatg cagttaagag
     2221 gacaaccagc cattctcaca aacattgttt ttgtaccaaa aaagataccc tctccttcaa
     2281 tactagtgaa gatctcattt atctgtatct tgtcagtctt tctttgcata atgtgtttta
     2341 tcctttatgc ctgccttgct aatcgcaact ccctatttat agatgattcg tatacgctgg
     2401 gagtaataga tctctttgac tttacaacta taataatatc tctccttgaa attttattac
     2461 ctagaattct gcatccaatc tataaaaaaa gtacgattaa caaaacggaa agtgccaagt
     2521 ttgcttatca actttttgcg agtcgcctta atgacaattg aatggcatca atagataaca
     2581 atgctaacaa gcatatgtca tttatccagc tgtgacaaga attttacttt gacttgtatt
     2641 gatgaccata tcatgtatac cattagcgaa aaagtgcata tattccagct acaccatatg
     2701 caattgatac tgaaatccgg gagatcatta ttgcaacatc ttgccttgat ataaagaaag
     2761 tcatgtctat tcctagtgca atagggattg ctgctagaga aattaaaccc accatcattt
     2821 gctcacggta attcgcgcta ttgtatattt tcataaataa atatgtagag aaattacctg
     2881 ctccaatacc aagtaagact agaaattgat agaagtgcgg aaatagagga attattgcaa
     2941 agggacaagc ccaacatatc ccatttattg cctttgcgtt agtaggccac ttcatactat
     3001 ttttcattct tccttgaata gaccggattg actttcgaat tttagaaaaa actgcgccaa
     3061 aggtgatgct aaaacttcca agccagatga tggcatagta atataatgat gtattattta
     3121 gaaatgcaat ttctgtcaaa atcgtaccta tagcaactgc catggccacc gttacaaaaa
     3181 ggatcccgaa ggctcgcctt gcctcaatta tctgtgattc attttgcaag atgaccaaat
     3241 tcttcccaac gataatttaa agtatagtag tatacagaat agagaaaacc gtagcaaaga
     3301 tgaaaagtct acttaaaacc cgggctgata acaatactgt caatgaaagt gtgagaccaa
     3361 tattattgcg gttgttttaa gtcttaatag taattaaacg agcaatagct agatttatgg
     3421 acaagtctgt agggaatggg cttatgcgaa aatgcgaatc ctgtggtaga tttagatttt
     3481 atctattgaa ctttatcttt tcaaaatcga tatgcaatga atgctatatg ttgtcgaagg
     3541 aaacagaaga aatcaatagg gattagattc aaatatatat tacagagtat gtatgtatgt
     3601 agttacaagt tctactttat tcttgtttgg ttccacaatt tctgcagaac tttgagttcg
     3661 acttgagatt agaaccgcac tcaaagcaga atttggtatc tgaatctgga attttcttat
     3721 caattgagcc ttttttcggt agagtaatat cattggtagg ataagagaga gatggtgatg
     3781 tagtagaagt agaaggagaa gaagaaatct cgccgtacat ttca
//
LOCUS       DASQSJ010000162         2478 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_218978, whole genome shotgun sequence.
ACCESSION   DASQSJ010000162 DASQSJ010000000
VERSION     DASQSJ010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218978"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VE223_03230"
     CDS             <1..550
                     /locus_tag="VE223_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HZC20634.1"
                     /translation="YFVIIRGITIAIILGFAIVSICFYSTSIVNAGLGELFVTIKGTL
                     IVLGSFYVQAEVIDPSAIYVGAIIGILSACVLFANSFPDYDADRYTGRRTLLFMIGKQ
                     KGSRLFPLLVMIPYIMILAGIFLGYTKFLSLACIASIPYAIKAIKHIDQYKHIDKFVP
                     AMAATVVYARITGLILAVSLLL"
     gene            complement(686..1102)
                     /locus_tag="VE223_03235"
     CDS             complement(686..1102)
                     /locus_tag="VE223_03235"
                     /inference="COORDINATES: protein motif:HMM:NF012304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase-like protein"
                     /protein_id="HZC20635.1"
                     /translation="MTVYTDASGVPHNIFGYYILETNEEKFIRSKFGLDSIEAEFMAI
                     IEALNSNTVRNSKQTIVYSDSESVVDFIQRKVQTRKGSIVRLLTVQVLNIIDNMENKP
                     FFMWIPRERNLAGILIEDEVPRKINKRMLFKESLLR"
     gene            complement(1996..2157)
                     /locus_tag="VE223_03240"
     CDS             complement(1996..2157)
                     /locus_tag="VE223_03240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20636.1"
                     /translation="MFSVSRIFGKKEKHEEQQIPQGIFKCKHCDMTFESKERLKKHNN
                     KAHSGKNKK"
BASE COUNT          763 a          460 c          429 g          826 t
ORIGIN      
        1 ttatttcgtt attattcggg gaattaccat tgcaattata cttggatttg caattgtgtc
       61 catatgcttt tattccacga gtatagtgaa cgctggcctg ggcgaattat ttgtgacaat
      121 taaaggcacc ttgattgtac tcggctcctt ttacgttcag gctgaagtaa ttgatccatc
      181 tgcaatttat gttggtgcaa tcataggaat tttatcagca tgtgttctgt ttgctaattc
      241 atttcctgat tatgatgcag accgttacac aggtcgaaga acacttcttt tcatgatagg
      301 aaaacaaaag ggaagcagat tgtttcccct cctagtcatg attccatata ttatgatcct
      361 agcaggcatt tttctgggtt acacaaaatt cttatcttta gcatgtatag catctatccc
      421 gtacgctata aaggccataa aacacataga tcaatacaaa cacatcgata aatttgtacc
      481 agcgatggct gcaacagttg tctatgcccg gataacagga cttatattgg ctgttagttt
      541 attattgtaa gagattagtt tagtaataaa cgtatgaaat actgctatca ctcgggcgac
      601 ttataaaggt gtatataagt cttactgtat ttcagtaata ttccttggtt tcaaccttcc
      661 tttaggtcca cctattaatg actcgtcatc gtagaagcga ttctttgaaa agcatgcgtt
      721 tatttatttt tcttggtacc tcgtcttcaa tcaggattcc agctaaattg cgttcccgtg
      781 ggatccacat aaagaacggt ttattttcca tattatctat gatattgaga acttgaactg
      841 taagtaacct gactatactt cctttgcggg tttgtacttt tctctggatg aaatcaacta
      901 cactttcaga atctgaatag acgatggttt gtttggaatt tctaactgtg ttactattca
      961 atgcttctat gatggccata aattctgcct ctattgaatc aagtccaaat ttacttcgga
     1021 tgaatttttc ctcatttgtt tctagaatat aatatccaaa aatattgtgg ggtacacctg
     1081 aagcatccgt atatactgtc atcatatgtt aaactacccc agacctcttc tgatctttgt
     1141 tttacaaata tgttaacatt tcccctcttt ctttcgaatg gactttatac ttataccgaa
     1201 tgtccaattg caaatgattc gttcattttg agattgagac tggccgattg taatagggcg
     1261 gagtgaattc aaaattgatt tggtagacgc aattgatcaa tgttttttct cgggtaattt
     1321 attatctgaa acatatgtga taagccattg aaacagttta ctgttgcata gtcagatgca
     1381 atgatattaa tctctttccg caatatttct catttcgtta tccatgacat tctgtagctc
     1441 tccaagaata tgcaaataaa gcatatagta atattccctt caagtttccc atgcctttgg
     1501 gaaattcgag tagtgatttt attcattcaa aatctaacca agacgatcac atacaaggct
     1561 tctgctatcg tatacgaaat ccacaagaga aaacgggatt cttaaagcta cagataacaa
     1621 aattattaaa agaactaagt caatagcagg aagaactcag atatgaggat ttcatcagcc
     1681 aatcctaaca ggctgacaag taaaactagc tgcagaagca tacccaaccg acaatttacg
     1741 agtctagcag cagggatgcg ccggaaaggt aaagtgaacg gcacgtagtt ttgtgtaatt
     1801 gtattgattg ctgaaccatc gagatatttt cgcgatcgga tcagtcatac acagcataga
     1861 aattgatagt gtccgaatac tgtagtgtac acgttacaac caggttctaa tcaactattg
     1921 ctatcacagc atatatttac tgttgaataa tggcaaacaa taacgtagaa tgtgagatta
     1981 caatgtagaa tacatctact ttttattctt tccactatga gccttattat tatgtttctt
     2041 taacctctcc ttgctttcga atgtcatatc gcagtgtttg cacttaaata taccctgggg
     2101 tatctgttgc tcctcgtgct tttctttctt gccaaatatc ctagatacac tgaacacaat
     2161 ctataaaatg ataaactaat ttataagatt tattgtatca tttctgccga aatgaaaata
     2221 acactgtcgt ctagaactgg aaatactaat aattttaata tcagcaccag atacaacccg
     2281 tggtggagtt ccataaagaa tagagaagag ctccaataat cccagcttct aattaaaaag
     2341 gactagtcgc gtaaagacca aggaaataga cgaatagaaa acatccaacg atatttctgg
     2401 gtcggcggtg tctatacatt tacactcaaa caaaatgata ataatctaag gaagtttttg
     2461 tctatgaata gttttgat
//
LOCUS       DASQSJ010000163         3307 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_20461, whole genome shotgun sequence.
ACCESSION   DASQSJ010000163 DASQSJ010000000
VERSION     DASQSJ010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20461"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(289..1149)
                     /locus_tag="VE223_03245"
     CDS             complement(289..1149)
                     /locus_tag="VE223_03245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20637.1"
                     /translation="MQAAIIKAKKSEIIIGLVGAMYILSIIPFLLSGAGLPTITKISL
                     VILPALGVAGLFLFSISRHPSFSGIEVVSGDDIILRDIEQHQAREMSLLSGLTGGFIA
                     TWILIGIILVAVEPALNLPSGALYSVVGTAIGYSGHTAVIVGISLQLVAGVLIGALFG
                     IITATAFKTFNVEKLPEAIGVGVLAGLLIFSVLFIQLTRFGVDPSQLKILSSIYPLGS
                     DANMLQTKVLNIMSICNYGCPSNVLAGAILLHAAYGAMIGLVTCTMTKACRRLESLQN
                     TVTKDGEYSN"
     gene            complement(1134..1616)
                     /locus_tag="VE223_03250"
     CDS             complement(1134..1616)
                     /locus_tag="VE223_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20638.1"
                     /translation="MSQIATHSTFGRDVFELTESRVGKEAVELQAVRMQREKLQSVYT
                     QILPKAVPGLIGDLLSREGNYHKSREDAPMYTIEVFTKKGTDPEEAKRYIFEKTGMMP
                     AIYDKGTHYVTNQKLTLQILKEISDCKDVLEITGEYSGSCGSIGPVHERGDQAHCRLL
                     "
     gene            1783..2925
                     /locus_tag="VE223_03255"
     CDS             1783..2925
                     /locus_tag="VE223_03255"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HZC20639.1"
                     /translation="MILFDQVEKSGSMSASPFSNTNRAEVLPSNKLTKKRVYLVLTLS
                     VVLFVVLTLSLLLFLSSIAVNDAAATTATNATTTIDNSVKMTKQESFMDSKGHLNIIG
                     VVDNTGNIPVQITVGLNTLDKKDDKSGVTTTTPSTMTDQTYGRIIYPLTGAPFKFVIA
                     PNQSVRGTAFISSIKQVPVPYYNVLRLNYSSMPTGSEKALVGTVKNIGPFDLHDVSVY
                     ASVHDKNGVQIDSVKSNAISLIKPGEEVAFTAIPDSAISPHVLFFSCAGVSLGNAPMT
                     ILDIGKGQSISYDINGVVSISDFKYDNAKDSIIFGVKHYNPEGGPMSLKIVKKSGNPS
                     AVVSVMMDGKLYNRASVKTSDPKTVLIDLFIPSGNHDVQVKGIRNA"
BASE COUNT         1014 a          644 c          571 g         1078 t
ORIGIN      
        1 aaatggtata tttttgttgt gtaagataga taattcctca tcattatatt gttactttat
       61 attaatagat tattcatagc atagattcat cacgatttga aactactaat gcttcacggt
      121 atatatacat acaaagcctc aatcatatag aaatgtgcat gttcagattt ttcctggtca
      181 catataagca agtcgtgaag taggtcagga tctacttttg gaaggtgtgt ttaatatagt
      241 gtctctagcc cctgataggc attccttatt tccttcaaat catacatcct aattgctgta
      301 ctctccatct tttgttacgg tattctgtaa gctttccaat ctcctgcaag ccttggtcat
      361 ggtacaagtt actaggccta tcatcgcacc gtacgctgca tgtaacagaa tagctcctgc
      421 aagtacatta gatggacagc cataattaca aattgacatt atattgagga ctttagtttg
      481 cagcatatta gcatcgctgc caagtggata aatgcttgag agaattttta actgcgatgg
      541 gtccacaccg aatctagtta gttgaataaa aagtactgaa aagatgagca gaccagccaa
      601 gacgcctact ccgatagcct ccggcaattt ctctacattg aaggttttga aggctgttgc
      661 ggtaataatt ccaaacaagg cgccaattag aacacctgca actagctgta agcttatacc
      721 cacaattact gcagtatgtc cgctgtatcc tattgctgta ccaactactg aatataacgc
      781 accggatggc aggttcaaag ctggctctac tgccactaat attattccaa tcaatatcca
      841 tgtagctata aacccgccag taagaccaga taataaagac atttctctag cttgatgttg
      901 ttctatatct cggagtatta tatcatctcc agacactact tctatgccac tgaaacttgg
      961 atgtcttgat attgaaaata ggaacaatcc agcgactcct aatgctggaa gaataactaa
     1021 actaatcttg gtaatggtcg gtaaacctgc tccacttagt aaaaacggaa ttatagataa
     1081 gatatacatg gctccaacca atcctataat aatttcggat ttctttgctt tgattatagc
     1141 agcctgcaat gtgcttgatc ccctctttca tgtactggcc caattgatcc acagctgcca
     1201 gaatattcac ctgtaatttc caatacgtct ttacaatctg agatctcttt gagtatttgt
     1261 aacgttagtt tttggtttgt tacataatga gtacctttat catatatggc aggcatcatt
     1321 ccagtttttt caaatatgta tcttttggcc tcctcaggat ctgtcccctt ttttgtaaat
     1381 acttctatcg tatacatcgg tgcatcttca cggctcttgt gataatttcc ctcgcgtgag
     1441 agcaaatcac caataagacc aggaactgcc ttgggtaaaa tttgtgtata tactgattgc
     1501 aatttctcac gctgcatcct aacggcctgt agttctactg cttcttttcc aaccctcgat
     1561 tcagttaatt cgaaaacgtc cctgccgaat gtggaatgag ttgctatttg actcatatac
     1621 tagtccatct cctgatttct tcattccctc gagctttcca tatcatatat atatctgtat
     1681 tatcgtcaag cattaattat ctactttagt agaaccaatg tatgatttgt aatatacatc
     1741 agtgaggctg cctaatgtat cagacataat atattcaata ttatgatttt atttgaccaa
     1801 gttgaaaagt caggttcaat gtctgcatca ccatttagta atacaaacag agcagaagtg
     1861 ttaccatcca ataaactaac caaaaaaaga gtatatctag tcttaacatt atcagtagtt
     1921 ttatttgttg ttctgacgct ttctcttctt ctattccttt cttcaatagc agtaaatgat
     1981 gctgccgcta ctactgctac taatgctact actactattg ataactctgt aaagatgaca
     2041 aaacaggaat ctttcatgga ttcgaagggc catttaaaca tcataggagt agtagataac
     2101 acggggaaca taccagttca gattaccgtt ggcctcaata cgctagataa aaaagatgat
     2161 aaatcaggcg ttacgaccac aacaccaagc acaatgacag accaaaccta tggcagaatt
     2221 atatacccct tgactggcgc tccatttaaa tttgtaattg caccaaacca gtcagttaga
     2281 ggtacagcat ttatctctag tataaagcag gttccagtac catattataa tgtcttgaga
     2341 ttgaattatt ctagtatgcc aactggtagc gagaaagctc ttgttggaac agtcaagaat
     2401 ataggtccgt ttgatctgca cgatgtaagc gtatacgcat cagtccatga caaaaacgga
     2461 gtacagattg attctgttaa aagtaatgca atctctttga taaagcctgg cgaagaagtg
     2521 gcgtttactg ccatccctga ctctgctatc tcaccacatg tccttttttt tagctgtgca
     2581 ggagtttcgc ttggcaatgc tccaatgacg attttagata taggtaaagg tcagtctatt
     2641 tcttatgata taaacggtgt agtaagtatt agtgatttta aatatgacaa tgctaaagac
     2701 agcattatct ttggagtaaa gcattataat ccagaaggag ggcctatgag tttaaagata
     2761 gtaaagaaat ctggaaatcc atccgctgtt gtatctgtta tgatggatgg aaagctatac
     2821 aatagagcat ctgtaaaaac atcggatcca aaaacagtgc ttatagatct tttcattcca
     2881 tcagggaatc atgatgttca ggtgaaagga attaggaatg cgtaagatta attattattg
     2941 actgcctact tatcgtaccc atggaaaaca agacatatag ttcttcctcc gataatttat
     3001 ggggttttag tcttcttgca aagactgtta tacggactat gacccagata tcgaaaacag
     3061 aaaatccata gttgttgttc atctatcatt tattgtattt gcagctgctt tttagctatt
     3121 gttctatagc catcttttag atattaagat gatataatat taatggcaga cttttgctta
     3181 ctttattata ataatggcaa ttaaacagat gttttgttat aaagtataca tcttcctaaa
     3241 aatctactta ttccaaatat tggagaatca aattagtttt ttattccaca cggtttataa
     3301 tacaaat
//
LOCUS       DASQSJ010000164         2357 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_408460, whole genome shotgun sequence.
ACCESSION   DASQSJ010000164 DASQSJ010000000
VERSION     DASQSJ010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_408460"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..858)
                     /locus_tag="VE223_03260"
     CDS             complement(<1..858)
                     /locus_tag="VE223_03260"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF020227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC20640.1"
                     /translation="MDTNDINNTKVAIVTGSSSGIGFETSLLLARNGFFTYATMRNPD
                     KSNKIIGLKQTERLPLEVLKLDVTDDKSVKEAIEKVTNEQGRIDVLVNNAGYGLVGPL
                     EELSIQEFKEQFETNLFGVIRVTKSVLPIMRKQRQGNIVNISSIAGRIGFPLTPAYVS
                     SKFALEGLSESMAYELEQFGINVILVEPGVIKTNFDNNLKIGKNVSTASIANDQDSPY
                     ADITKKRLAGFKPRFKNGTPAIEVARVILNAIASANIPSGLRYLVGNDAIKLMKIRKN
                     KSDKEFRRLV"
     gene            complement(956..2266)
                     /locus_tag="VE223_03265"
     CDS             complement(956..2266)
                     /locus_tag="VE223_03265"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HZC20641.1"
                     /translation="MLSSAIHIILAAILCVFTITPPVTHTAAAQQEQLNNNNNSNNPI
                     KHIVVIMQENHSFDNYFGTYPSANGIPENVCMPLDPDHPNPHSCVKPFLSTNATSPDM
                     PHEYLPSHIAYNNGKMDGFMLAESENNSTMSYYDNKTVPYYWDLAKHYVLADNFFSSV
                     LSYSLPNHWYAIAGQAPSASIYYGMPQKPTLATPNEKQVEKEYLQESNVTNTIADLFI
                     KNNNTTNITWKYYYHKINADGDYRNATINGDAYDFWNPFAAKPSSYSEIYASHFVRRA
                     QIFSDLKSGSLPQVAWVIPSDKLSEHPPANITLGMDWVVNVVNSIMNSQYWNSTAIIV
                     TWDDYGGFYDHVPPPQIDKYGLRFRMPSLIISPYAKPGFIDHTQYQFESMLKFIEWRF
                     NIPSLTDRDRNANNLLNAFDFNQKPTSPHIIPLSQAELHAINSD"
BASE COUNT          695 a          422 c          419 g          821 t
ORIGIN      
        1 cactaatctt ctaaattcct tatcagactt gttcttcctt attttcatca gcttaatagc
       61 atcatttcct accaaatacc ttaatcctga tggaatattt gctgatgcaa tggcatttaa
      121 aatgactctc gctacttcta ttgcaggtgt accattttta aatctaggtt tgaatccagc
      181 aagtctcttt tttgttatat ctgcataagg agaatcctga tcattagcga tagaagcagt
      241 agaaacattt tttcctatct ttaagttatt gtcaaaatta gtcttaatca cgcccggctc
      301 tacaagtata acatttattc caaattgctc taattcataa gccatagatt cggataatcc
      361 ctctagtgca aactttgagc tcacataagc aggagtaaga ggaaaaccta tcctgccagc
      421 tatagaactt atatttacta tattgccctg tcgttgcttt ctcataattg gtaacactga
      481 tttggtaact ctaataacac caaacaaatt agtttcaaat tgttctttga attcttgaat
      541 ggaaagctcc tctaagggcc ctactagtcc ataaccagca ttattgacta atacatctat
      601 tcttccttgt tcatttgtta ccttctcaat tgcttcctta actgatttat cgtcagttac
      661 atcaagcttt aaaacttcta aaggtaatct ttctgtttgt tttaacccaa taattttgtt
      721 agatttatca ggattgcgca ttgtagcata agtaaaaaat ccattcctcg ccaacaataa
      781 agaggtctca aatcctatac cagacgaact accggtaact attgctactt tcgtgttgtt
      841 tatatcgtta gtatccatct tgctgtcatg tggagtttat aaccaaatca taaagagaag
      901 ctgacaaaaa tgatcatgaa tttatttatg tcctagcctc aactagttta gtcaattaat
      961 ctgagtttat agcatgcaat tcagcctggg aaagcgggat gatatgggga gaagtaggtt
     1021 tctgattaaa atcaaatgcg tttagaaggt tgttggcatt tctatctctg tcagttaatg
     1081 atgggatgtt aaagcgccat tctataaatt ttagcatgga ctcaaattga tactgcgtat
     1141 gatcaatgaa ccctggcttg gcatatggtg atattataag agaaggcatt ctaaatcgta
     1201 ggccatattt atctatttgt ggcggtggaa catgatcata aaatccgcca taatcatccc
     1261 atgtcactat tattgcagta ctattccagt actggctatt cattatgcta ttaaccacat
     1321 tgactaccca gtccattcca agtgtaatgt tggctggagg atgttcgcta agcttgtcac
     1381 ttggaattac ccatgctacc tgtggtaaag agccactttt caaatcacta aatatttgtg
     1441 ctcttctgac aaagtgtgat gcatatattt cagaatagct ggaaggtttt gcggcaaatg
     1501 gattccagaa atcgtatgca tcaccgttaa tagtcgcatt tctataatca ccatcggcgt
     1561 ttattttatg ataataatat ttccaagtaa tgttagtagt attattattt tttataaata
     1621 agtcggctat tgtatttgta acattagact cttgaaggta ttctttttca acttgctttt
     1681 cattaggagt tgcaagtgta ggtttttgag gcattccata atatatagat gcactaggag
     1741 cttgacctgc aatggcatac cagtggttag gtaaactgta acttaataca gaggagaaaa
     1801 agttatcagc cagcacataa tgttttgcta ggtcccaata gtagggtact gttttattat
     1861 catagtatga cattgtgcta ttattttcac tttctgctag cataaaacca tccatcttgc
     1921 cgttattata tgcaatatgt gatggtagat attcatgtgg catatcaggt gaagtagcat
     1981 tagttgagag gaaaggcttt acacagctat gtggattagg atggtcagga tccaaaggca
     2041 tacacacatt ttcaggtatt ccattagcgc taggataagt tccaaaataa ttgtcaaagc
     2101 tgtgattttc ttgcattatt actactatat gtttaattgg gttgttacta ttattgttat
     2161 tattgagttg ttcttgttgt gcagctgctg tatgtgttac aggcggtgtg atagtaaaaa
     2221 cacatagtat ggcggcaagg atgatatgta tggctgatga cagcattaat ccatcaacac
     2281 ttccgtatat ttctttttaa cacagtatta ggctcctcca agtgatacta tcatgtctgt
     2341 aatgaagcca gcaaaca
//
LOCUS       DASQSJ010000165         2955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_498519, whole genome shotgun sequence.
ACCESSION   DASQSJ010000165 DASQSJ010000000
VERSION     DASQSJ010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_498519"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..493
                     /locus_tag="VE223_03270"
     CDS             65..493
                     /locus_tag="VE223_03270"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20642.1"
                     /translation="MGIPRQQQIHKVMIVEDELDILHLYKDFLRSKGFSITVCSIIAD
                     EVLIDYERYMPDLVIIDYKLPGKKNGLQAAREILSKHALAPILLVTAFESLKEEVNTD
                     AFFKDKNIQILIKPVKLSRLADIILGINNQCNTKSTTLQS"
     gene            complement(721..1608)
                     /locus_tag="VE223_03275"
     CDS             complement(721..1608)
                     /locus_tag="VE223_03275"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HZC20643.1"
                     /translation="MYLFLDARIVNVNEPLEIAQLQTPKPKGSQVLIRVESSGVCHSD
                     IHLWEGGYEGPGGQLLKTTERGVKYPLTPGHEIAGIVDGLGEEAEGFAKNDKVLVYPW
                     IGEDLCPACRIGQENLCDKPRSLGVYTDGGYAEYVLVPSYKYLVKIGDGMDMNATATL
                     SCSALTAYGAVKNTSLKPDDNVVIVGAGGLGLMAMQLAKAVAGSKIIAMDLDDEKLGA
                     AKKNGADNIINSKKEDPVKAVMELTDKMGADAVIDFVNASKTVEADMQFLRRRARVIL
                     VGLFGGELKINLVTMTTRA"
     gene            complement(2165..>2955)
                     /locus_tag="VE223_03280"
     CDS             complement(2165..>2955)
                     /locus_tag="VE223_03280"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HZC20644.1"
                     /translation="DRNGVLLVAEDEQEYNIRSKKWSSVIAVSHASLCPNNKNVWFEG
                     IRVHPNFRRRSVATQLLNTMISYGREQGAEEASAMVAADNIASQLMMESNGFAVISKW
                     SYYSIDKIPKRVDKVKLRSKVATFEDTETVRNYLKRSEVYKSSGKTYVNSWRWYFLDL
                     SVLEDFIKREKVLVTGNDPIKGLGIINKDNNNTLEIVYLDASDMKASEDLIRFAVNLV
                     HAEDATFDRIQIFSPQRTYFSIVMEQIGSERSEQFLLYKRVLQQ"
BASE COUNT          856 a          627 c          470 g         1002 t
ORIGIN      
        1 gatttagacc cttggctaac gcttgactat atacattttt taagaatcag agccaatatt
       61 ctatatggga atacctaggc agcaacaaat tcataaagtg atgatagttg aagacgagct
      121 agacattctg catttataca aggattttct aagaagtaag ggattttcta taactgtatg
      181 ttccattatt gctgatgaag tattgataga ttatgaaaga tatatgccgg atcttgtcat
      241 aatagactat aaactaccag gtaaaaagaa tggactccaa gcagcaaggg aaatacttag
      301 taaacacgct ttggcaccaa ttcttttagt aactgcattt gaaagtctaa aagaggaggt
      361 aaatacggat gcatttttta aagataagaa tatacagatt ttgataaaac ctgtcaaatt
      421 gtctaggcta gcagatatta ttttaggtat taataatcag tgcaatacca aatccacaac
      481 actgcagtca tgagttgttg gtaaaatttt gttctgctgg acttatgtct tgaatatgag
      541 gtatcttcat cgatcataaa ccctctgcca ataattttat catcctttag ctttgacaac
      601 gccctttagc ctgactaagt ttaacgtata tgaaactaca tggaatttat tacacccttg
      661 gttgctaatg ataccaattc caccatatcg cttggtgtcc cagtatacga tccgattaat
      721 ctatgctctt gtagtcattg taactaaatt tatctttagt tcacctccga acaatcctac
      781 gagtattact ctagcccttc ttctgagaaa ctgcatgtct gcttctacag tcttagatgc
      841 gttgacaaag tcaatcactg cgtctgcacc cattttatca gttaactcca tgaccgcttt
      901 taccgggtcc tctttttttg aatttatgat gttatctgca ccattctttt tcgcagctcc
      961 tagtttttca tcatctaaat ccatggcgat tattttagag cctgcaactg ctttagccag
     1021 ctgcatggcc atcaagccca gtcctcctgc accaacaata accacattat catctggttt
     1081 tagactggta ttctttaccg ccccatatgc tgtaagtgca gaacatgata atgtcgcagt
     1141 tgcattcata tccataccat ctcctatttt cactagatac ttgtaacttg gtaccaatac
     1201 atactctgca taccctccat ctgtatacac tcctaatgat ctaggcttat cacacaggtt
     1261 ctcctgaccg attctgcacg ctggacacag atcttcacca atccatggat agacaaggac
     1321 cttgtcattc ttagcaaatc cctcggcctc ttctcccaaa ccatccacta ttcctgctat
     1381 ctcatgccca ggagttaacg ggtactttac tcctctctca gtagttttca gcagttgacc
     1441 tcctggtccc tcatatcctc cctcccatag atgaatatcg ctatgacaaa cacctgatga
     1501 ttcgactctg atgagaacct gtgaaccttt aggttttgga gtttgaagtt gagctatctc
     1561 tagaggttca tttacattaa caattcttgc atctaaaaaa agatagatct ataatataaa
     1621 taattatgtg taatctgttt ctgcttagcg caacgacctt gtcattaata aaaaagatgc
     1681 actatagctt tcagaagttg taaatagggt tcatatacca tatttgtaaa tacattttat
     1741 aatccataag cctctgttaa cttaacctcc atcatccata actaagaata tcataaacct
     1801 tattcttcta tctatccata tcgatgtgaa tataaagtac aaataatttc agccagttgc
     1861 agatatatat gctgcctatc tatctatctc aatctggcat tctgcaagcg aagtggtgat
     1921 ggtcgtcatc gttgtcgaaa cattcagtcc tgtccttgat atgctgaatg aatgaatgaa
     1981 tgaatgaatc gttccatcat catgttcttc ttcttcaatt cagtactata cttgttcctt
     2041 aactaacagc ttgaaaaact ggtaataagc agacagacta aaattgttgt tgttgttctt
     2101 tccctcgata gatagatgca tcatcatcat agtattagtt aaagataata gactcaagaa
     2161 agtattattg ttgtaatact cttttgtaca ataaaaattg ttctgacctt tctgatccta
     2221 tctgttccat aactattgaa aaatatgttc tttgagggct aaaaatctgt attctgtcga
     2281 atgttgcgtc ttctgcgtgt accaaattta ccgcgaacct aatgaggtct tctgatgcct
     2341 tcatatcaga ggcatcgaga taaactatct caagggtatt attattgtct ttattgataa
     2401 ttcctagtcc tttaatcgga tcatttccag tcacgagtac tttttcacgc ttgatgaaat
     2461 cttctaagac ggacagatct aggaagtacc atcgccatga gttgacgtat gtttttcctg
     2521 atgacttgta gacttctgat cgctttagat aattccgtac cgtttcagta tcttcaaaag
     2581 tcgcaacttt agatcttaat ttaaccttat ccactctctt aggaatttta tcaatactgt
     2641 agtaactcca tttcgatatt acagcaaaac cgttactttc catcattaat tgcgatgcaa
     2701 tgttatcagc tgccaccatc gcagatgctt cttctgctcc ttgctcccta ccatatgata
     2761 tcattgtgtt tagtaactgt gttgcaacag atctacgtct gaaatttgga tggactctga
     2821 taccttcgaa ccaaacattt ttgttattag gacaaagaga tgcatgggat actgctatta
     2881 ctgatgacca ttttttactt cgtatgttat attcttgctc atcctctgct accaatagaa
     2941 ccccatttcg atctg
//
LOCUS       DASQSJ010000166         2264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_100485, whole genome shotgun sequence.
ACCESSION   DASQSJ010000166 DASQSJ010000000
VERSION     DASQSJ010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100485"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..533)
                     /locus_tag="VE223_03285"
     CDS             complement(297..533)
                     /locus_tag="VE223_03285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20645.1"
                     /translation="MRLRCSNIKEIPRSVKPVGNPNKYPNPENLYVLKKYTEIIEHKR
                     IDAIVTRILYEAATEGSNNVNAFRISGSDTVIDV"
     gene            643..1146
                     /locus_tag="VE223_03290"
     CDS             643..1146
                     /locus_tag="VE223_03290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20646.1"
                     /translation="MLKNRVDLVNGLEVSKPFLYLSNKSAPIRLRDVLLVIMPMVVTS
                     VPLMITVSALFVQPILNDTELVDLSIYTRIFDIVMLGYILRASLKSLVKAANVELLYV
                     PAVFGLLWLEQYSLITTYFDNSPSAFIGSILARLTGLTLFVYAIRYALAKGRITGDVE
                     IETREET"
     gene            1190..1402
                     /locus_tag="VE223_03295"
     CDS             1190..1402
                     /locus_tag="VE223_03295"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZC20647.1"
                     /translation="MINNKVTRPTHIQHTSRLSYDKLMTHFIELEQKRMIRRDNTAGL
                     ISMTNKGKKFIEQYKELLLLIESVGL"
     gene            complement(1950..>2264)
                     /locus_tag="VE223_03300"
     CDS             complement(1950..>2264)
                     /locus_tag="VE223_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20648.1"
                     /translation="AAVCTGNDITTMPSAVTNVPSPILVQRDDLLILEENSTVPIAIL
                     SNPVISKTTERIMIIVYIAMLGKVRTTTDNIMEIAPKLICKNRNQVGDLSAIIYFTYV
                     SF"
BASE COUNT          661 a          427 c          410 g          766 t
ORIGIN      
        1 cttggggcgc catggtgggt tagtttatct tttatggcaa taggacagtt actcccacag
       61 gatgcggtag ctggtcctga actttccctt gatccgttgc tcattgcata ataatttgtc
      121 gccgggttcc aagttattag acagaattta actttaagct acctactaca tcaattctta
      181 tacaagaatg ctttcttttt tacactacct gttaatcaaa atatcaacta ttttaggatc
      241 tccgtttaag ggagtaagac ttatcttctg ctataagaaa ttgtaagcgt tggtggctaa
      301 acatcgatga ctgtatcgga tccagatatt ctaaatgcat ttacgttatt tgatccttca
      361 gttgcagctt cgtacagtat tctagtgacg attgcatcta tccttttatg ttctataatt
      421 tcagtgtatt tttttaaaac atacaggttc tctggatttg gatacttatt aggattgcca
      481 acaggtttta cacttctagg tatctccttt atatttgagc acctaagcct catttcttac
      541 ttttattact cttcatctac cgattcgttt ttgtacagtg cattcttttg gatacaacta
      601 actcttcaat cagaaggctt agcattaata tccatatcat atatgctgaa aaatcgtgtt
      661 gatcttgtta atggattgga ggtttcaaaa ccatttcttt atcttagcaa taagtctgct
      721 ccgatcagac tcagagatgt cctgcttgtc atcatgccca tggttgtgac ttccgttcct
      781 ttaatgatta ctgtatctgc attatttgtt caaccaatcc ttaatgatac agaacttgtg
      841 gacttgagca tctataccag aatattcgat atcgtgatgc tcggatatat cctcagagcc
      901 agtctgaaat ctttggtaaa agctgctaat gttgaattgc tttatgtccc ggctgttttt
      961 ggcctacttt ggcttgagca atattcctta ataactactt attttgataa cagcccatct
     1021 gcttttattg gttcaatatt agcgcggctg actgggctga cgttgtttgt ctacgccata
     1081 cgttatgcac tagccaaggg aaggataact ggtgatgtgg agattgagac aagagaagag
     1141 acataaacta caactatttt acgaaatact ttgttctatt gaagaagaca tgattaataa
     1201 taaagtcacc agaccaactc atatacaaca tacgtcgagg ctatcatacg ataaacttat
     1261 gacccacttc atcgagctag aacaaaaacg catgatacga cgtgataaca ccgctggatt
     1321 gatatcgatg actaacaaag gcaagaaatt cattgagcag tacaaggaat tgctactcct
     1381 aattgagagt gtcggtctat agtagagcta tgagactagt aggatatgtc tatggtagaa
     1441 ttattatcct actaaacgat aggacctttt tgcaaagggg gacattctgt attttatggc
     1501 ttggacactt gtagcactcc ttgaagagtc atactgtgga gtttaagcgc tgttgtatca
     1561 tcatatagaa cgcctgccca aaatcctcga aagctttctg tgtaatttgt atgtctccat
     1621 gtagaccatt attaattacc atccattgca tattgataat cctgtaactg tcttgaaggg
     1681 aagcaatctt attcctatcc ctttgtggat aactctgatt gcgtctatgg tataccggcc
     1741 ttgaattcaa gtgataataa tcttctgaaa atatgttgac gcagcatcaa gaaaagcaac
     1801 ctggttattg agatatttta cttggtcacg catatatata aaaaacctat acacttctgt
     1861 atgatctaaa ttgtaaaaag ttcaatagaa gaaatcaatg caattttgac acatccgata
     1921 atacacgtaa ccataaataa gtatctaatt taaaaggata cataagtaaa atatatgatg
     1981 gccgataaat ctcctacttg gttacgattt ttacaaataa gcttgggtgc aatctccata
     2041 atattatcag tcgtagttct gacttttcct agcattgcaa tatacacaat tatcataatt
     2101 ctttccgtgg ttttactgat gaccggattt gaaagaattg ctatcgggac agtgctgttc
     2161 tcctcaagta taagtagatc atcacgttgg actaatatcg gacttggcac attggttaca
     2221 gcacttggca ttgtagttat gtcatttcca gtacatactg cagc
//
LOCUS       DASQSJ010000167         5768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_49417, whole genome shotgun sequence.
ACCESSION   DASQSJ010000167 DASQSJ010000000
VERSION     DASQSJ010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5768
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49417"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VE223_03305"
     CDS             <1..317
                     /locus_tag="VE223_03305"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HZC20649.1"
                     /translation="PGPSYKMRPAKLLREFLHDPIKTLQSIAYKYGDISYFKLGRQHV
                     YLINNPDYIEKVLVYDHRNFTKGKKLQLAKALLGEGLVTSEGDLHTIWFYHYDESICN
                     AS"
     gene            253..597
                     /locus_tag="VE223_03310"
     CDS             253..597
                     /locus_tag="VE223_03310"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HZC20650.1"
                     /translation="MKAIFIPSGSTIMMSQYVMHHDPRFYHEPERFDPERWRSEAKST
                     TPRFSYFPFGGGIRGCIGESFAWMEGILVIATIVRQWKMRLVSGHRVDLDPAITLRPR
                     YGMQMKLERRNV"
     gene            917..1102
                     /locus_tag="VE223_03315"
     CDS             917..1102
                     /locus_tag="VE223_03315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20651.1"
                     /translation="MESVKLQLELRPEAITIMSSPWEGVLASKTFEGHECYIKLLDFI
                     RQAYPDEKSISATISIK"
     gene            1167..1319
                     /locus_tag="VE223_03320"
     CDS             1167..1319
                     /locus_tag="VE223_03320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20652.1"
                     /translation="MNAFDKHKKGFTGWCEDCNEVFDMPWSANMHRDQKGHRIKVTEF
                     WITGRK"
     gene            complement(1377..1613)
                     /locus_tag="VE223_03325"
     CDS             complement(1377..1613)
                     /locus_tag="VE223_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20653.1"
                     /translation="MYILTKTKYVSDLNSEINSKLQQFAHISGGATILPGDSGLLIRM
                     LGYTASDIRIAMYEIITIIRKMVLNVSFSGIRKG"
     gene            complement(1653..2312)
                     /locus_tag="VE223_03330"
     CDS             complement(1653..2312)
                     /locus_tag="VE223_03330"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HZC20654.1"
                     /translation="MYESDLDFYIPNDIPPEISDYGSELKQLEVGKAGKIGALVLRLE
                     RNENEGKTVVKEQYSKVPLYTQRALYLEESLPSMAYMYIISPSGGILQGDRYRMDITL
                     KNKAYAHLTTQGATRIYRMEKNYATQMVNVDVDDGCYFEFVPDQIIPYRDSRFYQKVD
                     LKIHENATMVYSEIIVPGRVASRESFEYDICYLKSLGRNQNNKLRFIDIAILEPKKNN
                     L"
     gene            complement(2333..2986)
                     /gene="ureG"
                     /locus_tag="VE223_03335"
     CDS             complement(2333..2986)
                     /gene="ureG"
                     /locus_tag="VE223_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HZC20655.1"
                     /translation="MNSRRIPRVGIGGPVGSGKTMLIEQVVPILSSKGYRAGIISNDV
                     VSREDADRMRKNLAADRGLIPEDLVIGLATGGCPHTAVREDPSMNISVVEEMESKYND
                     LDLIIIESGGDNITTTFSPALADYFIYIIDVSGGDKYPRKRGLGIESCDLLVINKIDL
                     APHVGADLSIMERDAKTVRGNKPYVFVNSRTGQGVKEVTDHLIRDVLFESAPRLSNR"
     gene            complement(3004..3711)
                     /locus_tag="VE223_03340"
     CDS             complement(3004..3711)
                     /locus_tag="VE223_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018050707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HZC20656.1"
                     /translation="MSIDKISAEEISIMQLCDSFFPTGMYTMSSGLEALFYSKKKLRD
                     ANELRDLIRVYIEYQIGPADCTALGNSYGYAQSSDLQKLLEVDQILFSMKLVRETREA
                     MTRSGTQLLRCVSSFITDNEILNKYHEATKTRDASGVYPVALAVVSSTLNVPRTKAGL
                     MMLYSLSVSLVGAALRLGMVQHLEGQRIIHELKPSMLKTVKNNIDRPLTSMWQFVPDI
                     DIIQIAHERMASKMFIT"
     gene            complement(3701..4216)
                     /locus_tag="VE223_03345"
     CDS             complement(3701..4216)
                     /locus_tag="VE223_03345"
                     /inference="COORDINATES: protein motif:HMM:NF014829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20657.1"
                     /translation="MITIDRIIGNIGLDHNLRGKYEELCREELCERVRITRLESRRVR
                     MRKTSDKGTDVALTLPNGSQLKHGDILLFEPHKMIVIELEPENVAMIEIKNNIHQDDI
                     IEVPARVGHTIGNLHRPIKLEGNKIYFPIQADTELDMFRKLFGHLNEHLEIKKTKMVF
                     EPEEGTQIHEH"
     gene            complement(4213..4605)
                     /locus_tag="VE223_03350"
     CDS             complement(4213..4605)
                     /locus_tag="VE223_03350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20658.1"
                     /translation="MKLLIRHCVEESNIDQNFTVIDPSKIRHAVFKGGRIESLSGLID
                     PASHLNLDYPDHKVTMCAIIEKFEIGAKVRIADNGIVFAKVDSAAYDHYGNVDYTERL
                     SNMIQAVKREHEIRMMKKRGIGEKVKTN"
     gene            complement(4608..>5768)
                     /locus_tag="VE223_03355"
     CDS             complement(4608..>5768)
                     /locus_tag="VE223_03355"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HZC20659.1"
                     /translation="CQILVREAKKISLNDIALEQIVKTSLSSKMDGQKLSPLVILALR
                     SVGKNALYNESFDFDKSIMVIRRTNMDDRVVNGIILERKRMDPEMPLEIKDARVMIAK
                     LDLKPVKESWLKENSKYEEILHMENDRVTKSKEIVDAILATGANTILIASPEVDEFVE
                     NFFVSRKVFAVRISTEEIEYLSRYTGATPIRMIDDLKKPDILGRADRIYEEESNGVIY
                     LENGSGRNIVTMIVSGTTKETSLERWRAAIDGVNAAEAALNNGVVAGGGAAELHLIEK
                     VKSLRLKGLEQVGLEVVTAALESIMRQILTNAGFNGLEKVMAAKASSDDFGIDIDTGE
                     TVDMWKKGVLDPLLVKTMALEAAGEIAKSVLRIDRNLAAEDLSLQAVSETKR"
BASE COUNT         1635 a         1252 c          980 g         1901 t
ORIGIN      
        1 ctccaggccc atcgtataaa atgaggcctg ccaaattatt gcgtgaattt ttgcatgatc
       61 cgataaaaac attgcagagc attgcctaca agtacggtga tatttcttat tttaaacttg
      121 gacgtcaaca tgtatatcta attaataacc ctgattatat tgaaaaggtg cttgtatatg
      181 accatcgcaa ttttactaag ggcaagaaac ttcaacttgc caaagctctt ttaggagaag
      241 gacttgtaac aagtgaaggc gatcttcata ccatctggtt ctaccattat gatgagtcaa
      301 tatgtaatgc atcatgaccc acgattctat catgagccgg agcggtttga tcccgagcga
      361 tggagatcgg aagcaaaatc tacaactcct agatttagct atttcccatt tggcggagga
      421 attcgaggtt gtataggaga atcatttgca tggatggagg gtatacttgt tatagcaacc
      481 attgtccgac aatggaaaat gcgtctggtc tccggtcatc gtgtagacct tgacccagcc
      541 atcactctac gtccaaggta cggtatgcag atgaaattag aacgaagaaa cgtatagata
      601 ttaaaatcga ataaatttta ttttatatga agattttatg ctgcaggagc aaggcaagaa
      661 aaatggatgc tggcatgcaa cgaatattac ataattagcg attgaagcaa cgaatgctag
      721 tgcatatatc taataatagg agtaataaaa agcaattact tatcaatagt aggcataact
      781 aactatatac taaaatgttt actctatttc gaccataact cgtccaagat ctgacaggag
      841 attacaacaa tggttatatt atcatcatta tcattatcac tatacgcata aattcttgta
      901 cgtgagttat gcaactatgg aatcagtgaa gctccaatta gagttaagac ccgaggcaat
      961 tacaataatg tcaagtccct gggaaggcgt gctagcttct aaaacttttg aaggtcatga
     1021 atgttatata aagctccttg attttattag gcaagcctat ccagatgaga agtccatttc
     1081 tgcaaccatt agtatcaaat aattttgcaa aatatgctgg agatgccttc aagcatatat
     1141 attgaattat aatagtagat cagtgcatga atgcgtttga taaacacaaa aaaggcttca
     1201 ctggctggtg tgaggattgt aacgaggtat ttgatatgcc gtggagtgcc aatatgcata
     1261 gagatcagaa agggcacaga ataaaggtta ccgagttttg gattacaggt agaaaataaa
     1321 ataaaaatat aaaataaaca aatatgatta aataggtatt tagttttaaa tccactttag
     1381 ccttttctta tcccactaaa ggatacattg aggaccatct tccttatgat agtgataatc
     1441 tcatacatcg caattcgaat atccgaggcg gtgtatccaa gcattcttat taacaggcca
     1501 gaatcaccgg gcagaatcgt tgctcctcca gatatatgag caaattgttg cagtttagaa
     1561 tttatttcgc tatttaagtc tgatacatac tttgtctttg tgagtatata catgtttcct
     1621 acgacatcaa aatttccgag tatacctaga agctataagt tatttttctt aggttccagt
     1681 atagcaatgt ctatgaatct taacttgttg ttttgattcc ttccaagaga cttcaagtag
     1741 catatatcat actcaaatga ttctctgctt gcaactctcc ctggaacgat gatctctgaa
     1801 tacaccatgg ttgcattctc atgaatcttc aaatcaactt tctgataaaa acgtgaatct
     1861 cgatagggaa ttatttgatc tgggacaaat tcaaagtaac agccatcatc aacatcaaca
     1921 tttaccattt gtgttgcata atttttttcc attctgtaaa tcctcgttgc gccttgtgtt
     1981 gtcaaatgcg catatgcttt attttttaaa gtaatatcca tcctataccg atccccctgc
     2041 agtattccac ctgagggaga tattatatac atataagcca tagaaggcaa tgattcttcc
     2101 agatataatg ccctttgagt ataaagggga acctttgaat attgctcttt aacaacagtc
     2161 tttccttcat tttcgtttct ctctagcctt aatacgagag caccgatctt tcctgctttt
     2221 cctacctcaa gttgctttag ctcagacccg taatctgata tctcgggagg aatatcattt
     2281 ggaatataaa agtctagatc gctctcatac atgctaaaat ctatctatct acctatctat
     2341 ttgagagcct tggagcagac tcaaaaagaa cgtctcttat gagatggtct gttacctcct
     2401 ttactccttg acctgttctg gaattcacaa agacatatgg tttgttccct cttacagttt
     2461 tggcatctct ttccattatg ctcagatctg cgccaacatg tggagcaaga tcaattttat
     2521 ttatcaccaa aagatcacaa ctttctatac ctaagcctct ctttcttgga tacttgtcac
     2581 cacccgagac atctataatg tatataaaat aatctgccaa tgcagggctg aaagtagtgg
     2641 tgatattatc acctccactc tcaattataa ttaagtcaag atcattgtac tttgattcca
     2701 tctcttctac tacagatata ttcatcgatg ggtcctcacg tacagccgta tgaggacacc
     2761 ctcctgttgc cagcccgatt accaagtctt ctggtatcag gcctctatcc gccgccaagt
     2821 tttttctcat cctgtctgca tcttccctag acacgacatc atttgaaatt atacctgctc
     2881 tgtatccctt tgaggataag attgggacga cctgctctat tagcatggtc ttacctgaac
     2941 caactggccc acctatccct actctaggga ttcgtctgga attcatagca aatacaaccc
     3001 acattaagta ataaacattt ttgaggccat cctttcatgt gcaatttgga taatatcaat
     3061 gtcaggcaca aattgccaca tgcttgttag tggtctatca atattgttct tgacggtctt
     3121 tagcatactg ggctttaatt cgtggataat tctttgaccc tccaggtgtt gtaccatgcc
     3181 taatcttaat gcagctccta caagacttac tgatagcgag taaagcatca taagaccggc
     3241 ctttgttctt ggaacattta aagtgctgct aacaacagcc aatgccacag gatatacacc
     3301 agaggcatct ctggtctttg ttgcttcatg atatttattc agtatttcat tgtcggttat
     3361 aaaagagctt acgcatcgca gaagttgtgt tccagatctt gtcattgctt cccttgtttc
     3421 ccgaacgagt ttcattgaaa ataggatctg atccacttcg agcagttttt gtaaatccga
     3481 gctttgtgca tatccatagg agttgccaag agcagtgcaa tctgctggtc ctatctggta
     3541 ttcgatatat actctaataa gatcgcgcaa ctcattagca tcccgaagct tttttttgct
     3601 gtaaaataac gcttcaagac cgcttgacat tgtatacata ccagtaggaa agaaggaatc
     3661 gcaaagctgc ataatactta tctcttctgc acttatttta tcaatgctca tgtatctgtg
     3721 tgccttcttc aggttcaaag accatctttg tctttttgat ttctaaatgc tcatttagat
     3781 ggccaaaaag cttcctgaac atgtccaatt cagtatctgc ctgaattgga aagtagatct
     3841 tgtttccttc tagctttatg ggccgatgca gatttcctat agtgtgacct actctggcag
     3901 gtacttcaat aatatcatct tgatgaatat tattcttgat ttcaatcatt gctacatttt
     3961 ctggttctag ctctataact atcattttat gcggttcaaa caagagtatg tcaccatgct
     4021 taagctgtga accatttgga agtgtcaatg caacatccgt ccctttgtca gaagtcttcc
     4081 tcatccttac tcgtcgcgac tccaatctgg taattcttac tctttcacaa agttcttccc
     4141 tgcaaagctc ctcgtacttt cccctaagat tatgatctag tcctatattt ccaattatcc
     4201 tatctattgt gatcaattcg tctttacctt ttctcctatt cctcttttct tcatcatccg
     4261 tatttcatgt tcccttttta cggcctgaat catattggac aatctttctg tatagtcgac
     4321 atttccataa tggtcataag cagcactgtc aaccttagca aaaacaatac cattatctgc
     4381 aattcttact tttgccccta tctcaaattt ttctataata gcgcacatag taaccttatg
     4441 gtcaggataa tctaaattaa ggtgcgatgc aggatcaatc aagcctgaca gtgattcaat
     4501 tctaccgcct ttgaatactg catgtcttat ttttgaagga tcgattacgg tgaagttttg
     4561 atctatgttg gattcttcaa cgcagtgtcg tattagcaat ttcatagtca cctctttgtt
     4621 tctgacactg cctgcagact caaatcctct gctgccaagt tcctgtctat tctcagaaca
     4681 gatttagcta tttcccccgc agcttctaga gccattgtct taaccaacag gggatcaagt
     4741 acaccttttt tccacatatc tacggtctca ccagtatcaa tatcgatacc aaaatcatca
     4801 gaagaggcct ttgcagccat aaccttttca agtccattaa agccggcgtt tgtaagaatc
     4861 tggcgcataa tgctctcaag agccgcggta acaacttcaa gacccacctg ctctaggccc
     4921 tttagtctaa ggctttttac tttttctatg aggtgcagct ctgctgctcc tccacctgct
     4981 actacgccat tattcaatgc agcttctgct gcatttacac catcaatagc agctcgccac
     5041 cgctcaagtg atgtctcttt agttgtccca gatacaatca ttgtaacaat atttcttccc
     5101 gaaccattct ccaagtaaat taccccgtta ctctcctcct cataaatgcg atctgctcta
     5161 cccaagatgt caggtttttt tagatcgtct atcattctta taggagtggc gccagtataa
     5221 cgtgacaagt actctatctc ttcagtcgat atgcgaacag caaatacttt gcgggatacg
     5281 aaaaaatttt ccacaaattc atctacttct ggagacgcga ttagaatagt gttcgcacct
     5341 gttgctagaa tcgcatctac tatttctttt gacttggtca ccctgtcatt ttccatgtga
     5401 agtatttctt catacttgct gttctccttt aaccaagatt cttttacagg tttgagatct
     5461 agtttggcaa tcattaccct tgcgtctttt atctccaaag gcatttctgg atccattctt
     5521 tttctttcta ggataatccc gttaactact cgatcgtcca tgttagtcct tcgaataacc
     5581 attattgact tgtcaaaatc aaaagattca ttatacaatg cattctttcc cacagatctt
     5641 agtgccaaga taactagcgg agatagcttt tgtccatcca tcttcgatga taaagatgtc
     5701 tttactattt gttctagcgc gatatcattt aaagagatct tttttgcttc tctaactaat
     5761 atttgaca
//
LOCUS       DASQSJ010000168         2027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_219528, whole genome shotgun sequence.
ACCESSION   DASQSJ010000168 DASQSJ010000000
VERSION     DASQSJ010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219528"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1359
                     /gene="cysS"
                     /locus_tag="VE223_03360"
     CDS             <1..1359
                     /gene="cysS"
                     /locus_tag="VE223_03360"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HZC20660.1"
                     /translation="SNSNHIRIYLCGLTVYDNSHIGHGRTIILFDVLHRYLLYKGYKV
                     EFIQNFTDVDDKIISRAKVEGLRAKEIAAKYILNYFRDFDCLNVLRADKYPMATRNIN
                     EMINLIEGLFKKGYAYLSPNGVYFRVKSFPDYGKLSKRSTKELESGYRIEIDASKEDP
                     LDFALWKFYSDPPLWNSPWGKGRPGWHIECSAMALKYLGSTIEIHGGGNDLIFPHHEN
                     EIAQSEAFTGKQFAKLWVHVGMVTINSEKMSKSLGNIVTIQDAIRQWGVNTLRIYCIA
                     VQYSKPLDYTEKLLSESRHRWRQIETCAYELRFASSTKDIGLPKLIEKLCEESMKEFE
                     SAMNANMNTALALAAFMKFVTEINRYAAADELTKPISKSALVTFSNFMDILGLKVNEA
                     TEMEKKEIEELIAIRSKLRSEKKFQSSDSIRKRLIEQYSVELMDHKDRTIWKKVENPS
                     IK"
     gene            1728..>2027
                     /locus_tag="VE223_03365"
     CDS             1728..>2027
                     /locus_tag="VE223_03365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20661.1"
                     /translation="MKRKQKDKIIISSGIGVISLIIALAVYLQLENAKIQAYTESYGR
                     LVADSRLLTQSYQSEIGKWKSKQYDNATMVSITDKYLPKFQSLVDRAGQLQPPEKY"
BASE COUNT          714 a          324 c          397 g          592 t
ORIGIN      
        1 agtaatagca atcatattcg aatttatctc tgtggtctga ccgtttatga taattcacac
       61 ataggccatg gtagaactat tattctcttt gatgttttgc atagatacct actttataaa
      121 ggatacaaag tagaattcat ccagaacttc acagatgttg atgacaagat aatcagtaga
      181 gcaaaagtgg agggcttaag agctaaggag atagctgcaa aatatattct taattatttt
      241 agagattttg attgtcttaa tgttctgaga gccgataaat atcctatggc aactaggaat
      301 ataaatgaga tgattaattt aattgaggga ttattcaaaa agggttatgc atatctctcg
      361 cctaacggtg tttattttcg tgtaaagtca tttcctgatt atggcaagct gtcgaaaaga
      421 tccactaagg aactggaatc aggatataga atagaaattg acgcatctaa ggaggatcca
      481 cttgacttcg cactctggaa attttattcg gacccaccac tttggaatag tccttggggt
      541 aaaggcaggc ctggatggca cattgaatgt tctgccatgg ctctaaagta tcttggtagt
      601 acaatagaga tacacggtgg aggaaatgat ttgatcttcc cacatcatga aaatgaaata
      661 gcacagtctg aagctttcac tggcaagcaa tttgccaaac tatgggtaca cgtaggaatg
      721 gttaccatca attcagaaaa aatgtcaaaa tcgcttggaa acattgtaac catacaggat
      781 gcaattcgcc agtggggagt caatacctta cgaatctatt gcatagctgt acagtattca
      841 aagccacttg attacacaga aaaattactc agcgaatcaa gacacaggtg gcgtcagata
      901 gaaacatgtg catatgaatt gcgatttgct agcagcacta aagatatagg attacctaag
      961 cttatagaaa aattgtgtga ggagtctatg aaggaatttg aatcggcaat gaatgccaat
     1021 atgaatacag cactagctct agcagcattt atgaaatttg ttactgaaat aaaccgttat
     1081 gctgctgcag atgaactcac aaaaccaata tcaaaaagcg cccttgttac ctttagtaac
     1141 ttcatggata tattaggact taaagtgaat gaggccactg agatggagaa aaaagaaatt
     1201 gaagagctaa tagctatccg cagcaagctg aggtcagaaa aaaaatttca gagctctgat
     1261 tctataagaa aaagattgat tgaacagtat tctgtcgagt taatggatca caaagataga
     1321 actatttgga agaaagttga aaacccctct ataaagtgaa aagataggtt tgaatacaga
     1381 caactgtaat aagaatgaat aaagatatct gtacgataga ggatctttct ttgattagtg
     1441 tttttgactc acagcttttc tgtatgtgtg tgattgttaa acctttttga aaaagttaga
     1501 gccaacgtga cagtttagaa tgattatata gatgtatatg tatatatatg caatggcctg
     1561 acctcgtcaa ataatcgata tttgactaga tatttggtaa caaaattcct ttcattgttc
     1621 atctttttat taaattattg gtagctaata atgagatttt tcagggatac caactatatt
     1681 gcaacattta ttttgtcatt atcataataa ttaacccata taagccattg aagcggaagc
     1741 aaaaggataa aattatcatt tctagtggaa taggagtaat ttctctgata atcgctcttg
     1801 cggtatatct gcaactagaa aatgccaaaa tacaggccta tacagaatcc tatggaagac
     1861 tcgtagcaga ttcaaggtta ttaacccaaa gctatcaaag tgaaataggc aagtggaaat
     1921 caaagcaata cgataatgcc accatggttt ccatcactga taaatacttg ccaaaatttc
     1981 aatcactagt tgatagagca gggcagttgc aaccaccaga aaaatat
//
LOCUS       DASQSJ010000169         3281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_219665, whole genome shotgun sequence.
ACCESSION   DASQSJ010000169 DASQSJ010000000
VERSION     DASQSJ010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219665"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..1717)
                     /locus_tag="VE223_03370"
     CDS             complement(353..1717)
                     /locus_tag="VE223_03370"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HZC20662.1"
                     /translation="MSTSSNNRKYTFLTLMAITIVLVGYYFVHYVYPQLSIIGGGGAP
                     MVVNNPNLKVETVFKGLRSPTSMAFLAPNDILVLEKDQGTVQRIVNGKILAQPVLQVN
                     VATEGERGMLGIAITKHSTAEKRAATAATTNTNTSSSTFVFLYYTEKSNNSSEAPLGN
                     RVYRYELVNDKLINPKLILSLPATPGPFHDGGKVVIGPDNNVYAVIGDLLYHRTQSQN
                     IASGGPPDLTSGIIRATQDGKPPSNSPLGNTYPLNLYYAYGIRNSFGIDFDPITKKLW
                     DTENGPNYGDEINLVEPGFNSGWAQVQGIWTPEGETGNENAGLINLRPPNLVDFGGKG
                     KYRSPEFIWFQTVAPTALKFFDSAKLGKQYQNDMFVGDYDNGHLYDFKLNQNRTGLVL
                     TGTLSNKIANTPQDTQAVLFATGFDGGITDLQVGPDDGYLYVLTLAGSIYRIVPSSSS
                     SNSR"
     gene            complement(2200..2943)
                     /locus_tag="VE223_03375"
     CDS             complement(2200..2943)
                     /locus_tag="VE223_03375"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HZC20663.1"
                     /translation="MSFTQQPSLEQIRARITKTLKDGIQLDMSTQESKKFLKRHVNSK
                     TNLVIMFVDINNSTQMSLALTEKKFALILQTFAQEVSLAVLGYGGYVFKYEGDAVIAL
                     FPAEYDQTKACINALYCSRAILEIISEVINPVFRANELPEITIRIGLAYGYALVVLYG
                     KSLEKSHIDIVGSSISLASKVASIAHPNQILVGEFIYDILHSSANNEHFLRNVKFQEV
                     NLDPRRWKYLSHSDPQSLYHVYEFLENLP"
BASE COUNT          968 a          622 c          575 g         1116 t
ORIGIN      
        1 tgttgactag catcataaag acaagtgtaa tatcgctaat aattcctcgc tatgttatag
       61 tgtatctgtg taatacttca aacactggat gtaaaaagaa gagttcatga aaggtagcta
      121 tccacaacgc gtagcatttg atcctgcacg caatggccta aagagtatat ttcacagcat
      181 ccttgggcac ttgcagtaag agaaatggat agaaagatat gtacatagct actacatgtg
      241 agtaggatga ccgacacaac tttaaccgca tcatctattc attttgaact tcttgttgtt
      301 gtttttggtt atggttcttc tttgtatatg caatgttggt aggatctcaa agctatcgag
      361 aattagaaga tgaggatgat ggaactatcc tatatattga acctgcaagt gtaagaacgt
      421 acaaataacc atcatcaggt ccaacttgca aatctgtaat tccgccatca aatccggtag
      481 caaataatac tgcttgagta tcctgtggag tattagcgat cttgttagat aatgtgccag
      541 taagaactaa tcctgttcta ttttggttta gtttaaagtc atatagatgt ccattatcgt
      601 aatctcctac gaacatatca ttttgatatt gtttacctag ttttgcagaa tcaaaaaact
      661 tgagtgctgt aggagctact gtctgaaacc agatgaattc aggtgatctg tattttcctt
      721 tccctccaaa gtccactaaa ttgggaggac gaagattgat tagtcctgca ttctcgttcc
      781 ctgtttctcc ttctggagtc catataccct gtacttgtgc ccatccactg ttaaagccag
      841 gttctacaag atttatttca tcaccataat tgggaccgtt ttctgtatcc catagttttt
      901 tggttatagg atcaaaatcg ataccaaagc tatttcttat accataagca tagtaaagat
      961 ttagaggata tgtatttcct agaggactat ttgatggagg cttcccatct tgtgttgctc
     1021 tgattatgcc gctggtcagg tcgggtggtc ctccagaagc tatattttga gattgggttc
     1081 tatgatacag aagatcgcca ataaccgcat acacattgtt atccggccct atcactactt
     1141 ttccaccatc atgaaatgga ccaggggttg ctgggagact tagaatgagt ttaggattta
     1201 ttaatttgtc atttactaat tcatatctat agacacggtt tcctaaaggt gcttcactac
     1261 tattgttgct tttttcagtg tagtaaagaa atacaaatgt agaagaacta gtattagtgt
     1321 tggttgtagc cgcagtagca gctctctttt ctgctgttga atgttttgta atagcaatcc
     1381 ctaacattcc cctttctccc tctgtagcaa catttacttg caatactggt tgtgcaagaa
     1441 ttttaccatt tacaatcctt tgaactgttc cctggtcttt ttctaatact aaaatatcat
     1501 ttggggctaa aaatgccatg ctagtaggag atctcaatcc tttgaatact gtctctacct
     1561 taagattagg attgttgaca accattggtg ctccccctcc tcctatgatg gagagctgag
     1621 gatagacata atgaacaaaa taatatccaa caagaactat agtaatagcc atcaatgtca
     1681 aaaacgtgta ttttcgatta ttactactgg ttgacatgtc ttgtactcct tcctccttct
     1741 tttatgtttt acagtttgtt ttatgaccga tctaataata ttccatatga aggtattttg
     1801 ctgataggtt agttgcaaat aacaattatc gactgatgta ttttatttta tttcagagtc
     1861 tgtaactata gcatctacct ataccctcac caagaataac ttgcatcttc acagctggct
     1921 aacacttatg ctcttcagat gctattacta caacctcaaa caggtcatag tctgaggtaa
     1981 ggtaagagaa gatatatcgg gattctagta gtcttgcctt gattgttgaa tatctctaag
     2041 actttccttt ccctatcagt gtttattgtc aattgacaaa gtagtatgtt actataataa
     2101 agaactcacc tacctatgtc ttttctctga tacctcgtga tatcagtcat tgttgtgctg
     2161 atacctctga tttcacctgt tactcaaaat atatgcctgt catgggaggt tttctaaaaa
     2221 ctcatacaca tgatacaaac tttgaggatc tgaatgagac agatatttcc accttcttgg
     2281 gtccaagttc acctcctgga acttgacatt tctcaaaaag tgttcattgt ttgctgatga
     2341 atgaagaata tcgtaaataa attcacctac caatatctga ttaggatgtg ctatggacgc
     2401 aacctttgaa gctaaactta tactggaacc tactatgtct atgtgcgact tttccaaact
     2461 ctttccgtaa agtactacta aagcatagcc ataagccaat ccaattctta tcgtgatttc
     2521 cggtaactca tttgccctaa aaactggatt aataacttcg cttatgattt ccagtattgc
     2581 tcttgagcaa tatagcgcat ttatgcatgc ttttgtttga tcgtactctg cgggaaataa
     2641 tgctatgaca gcatcacctt catacttgaa gacatatcca ccataaccta acacagcaag
     2701 acttacttct tgtgcaaagg tctgcaatat taaggcaaat tttttttctg tcaaagctag
     2761 gctcatttgt gtggagttat tgatgtccac aaacatgatc acaagatttg ttttgctatt
     2821 tacgtgtctt ttgagaaatt tttttgattc ttgggttgac atatcaagct ggatgccatc
     2881 ttttagggtt ttagttatcc tagcacgtat ctgctccaat gaaggctgct gtgtaaaact
     2941 cataaattgt cctccttgtt aggagtcaaa cagcttctag tcctaatgat aatatggtta
     3001 attctaatgt gctattgact ctcactttcg cttttatcat atataattgc aacatgatct
     3061 ctaattaata gtgtcttcat catagtataa aactactgca tagcaaaata aaattgataa
     3121 gctatatagg caaattatta ctctcaatat aggcaagtat tgataaaaaa agtattatct
     3181 ggagatgaaa ttaagcagat cctgtactca gtaatagaat atgaaatagg taggaaaaag
     3241 attcagacag gcatcacttc tgacattgaa ttatcacgaa a
//
LOCUS       DASQSJ010000170         3225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_21046, whole genome shotgun sequence.
ACCESSION   DASQSJ010000170 DASQSJ010000000
VERSION     DASQSJ010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21046"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(412..807)
                     /locus_tag="VE223_03380"
     CDS             complement(412..807)
                     /locus_tag="VE223_03380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20664.1"
                     /translation="MSIHAVWSNRFIISAIVQGAIITGLTISIVSIQILFSSKINIIQ
                     FLSLSFEGPAKWFFLGYIFYMILVVAIAVTATFYHHLETDMRKNIRGFKSVLAWIHLV
                     GMNVGGAATTLTMIFAGLIDSGILSVITS"
     gene            1132..2184
                     /locus_tag="VE223_03385"
     CDS             1132..2184
                     /locus_tag="VE223_03385"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZC20665.1"
                     /translation="MQIGIDSFAAWDNASVSTSPSERLQRLVEQIEYADKIGLDVFGV
                     GEHHRMEFLDSAPAIILAAAASRTKRIRLNSAVTVLSAADPVRVFQEFATLDLLSQGR
                     AEMVVGRGSFVEAFPLFGLHLEDYDLLFAEKLDLLLKIRDNEYVYWSGKYRPRLNGQG
                     VYPRPLQNPLPIWIGVGGTPQSFVRAGLLGLPLMVAIIGGETHRFRPLIDLYRKAGRQ
                     AGYTADQLKVGVHSLGYVAHSTQEAVDDFYPGYARTMTDIGKERGWTKMTRASFDAQR
                     SPEGALLVGDPEEVAEKIIRHSKALGGISRITFMMNPASLPHEKLMQATKLIGTRVAP
                     ALREVGEIGENYVKVS"
     gene            2181..2543
                     /locus_tag="VE223_03390"
     CDS             2181..2543
                     /locus_tag="VE223_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZC20666.1"
                     /translation="MKQPKRIEEQTQEGCEIANIWEVLGRRWSLLILKNLCNKDAIRF
                     NELKRSLSGISSTVLSDRLLELEREGLISKKIYPEIPPKVEYSITPQAKELETIIKEL
                     GKWANRWKSPQQLQKTKL"
     gene            2854..>3225
                     /locus_tag="VE223_03395"
     CDS             2854..>3225
                     /locus_tag="VE223_03395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20667.1"
                     /translation="MMVIDIGFSDMLSIAQTIGIVSTLLLTLYYYRRQIQKISTDIET
                     QVLNDLDEKVHRLNESMVEHPELSKVVTNLPSISLDAQYSFDVLNVWSHAYDMRERKV
                     LNDNEWFGWVHWMRNAFKEGTI"
BASE COUNT         1073 a          547 c          640 g          965 t
ORIGIN      
        1 tgagaaaaat agagtcaata ccattgttcc tactattcca attgtttgtg ctatactcag
       61 catgtcagaa aatcctatta ttccttcaac cattaggcaa atggaataat tctttgtaat
      121 aagcattatc tacagaataa aaagaagata cataatcaaa tcttctctta agaaaacttc
      181 attagtcgtc gttgttgctg ttttttccaa tttctgcttc ttgttcttct ttttgctgat
      241 gccttacaat tttagattat ctgatttttg taaatatgct gtaatatagg ttacaccacc
      301 tgatataact cctatgctaa gtaagcctgc aaatgcagag ataggtggaa caaattgcac
      361 cattactccg acatttggtt gtaattgaga aacagaagaa gaactaccaa ctcagcttgt
      421 aatgactgaa agtatcccag aatctattaa cccagcaaat atcatagtta gtgttgtggc
      481 agcgcctcct acattcattc caacaagatg aatccatgca agtacagatt tgaatccacg
      541 aatatttttt ctcatatcgg tctcaaggtg gtggtaaaaa gtcgctgtga cggctattgc
      601 cactaccaat atcatataaa aaatataccc gagaaagaac catttagccg gaccttcaaa
      661 tgacaaagat agaaactgga taatattgat tttagaagaa aatagtattt gaattgaaac
      721 aattgatata gtgagtcctg taattattgc accctgaact attgcagata ttataaacct
      781 gttactccag actgcatgga tagacatatg atgacgacga tcttggtata acttacaaca
      841 tgcaaataat agtttgtata aaatactgat aaccgaataa taaaaaagag agaatggtaa
      901 atcgtatttt agccaaggct gaggagtatt gaaagtttgc aatgataact atctatactc
      961 attggtagtt ctttctcagg agatgtccta tatagtaatc tattcctcta atcaagacta
     1021 gcaatttatt tatatatagt aattttctcc ttactaagta cggtagttga tatctactaa
     1081 gttgtaaatc actactgtag ttaaataaca tgcttaccta atgaatctta tatgcaaata
     1141 ggaattgata gctttgcagc ttgggataac gctagcgttt cgaccagtcc atctgagcgt
     1201 ttgcaaagat tagttgaaca aattgaatat gccgataaaa tcgggttgga tgtgtttggt
     1261 gttggcgaac atcatcgcat ggaattcctc gattcagctc ctgctatcat tctagctgct
     1321 gcagcttcga gaacaaaacg catacgtctt aacagtgctg taacagtatt aagtgcagcc
     1381 gaccctgtga gagtgtttca agaatttgca accttggatc ttttatcaca aggtagggcg
     1441 gagatggttg ttggtcgcgg ctcatttgtc gaagcatttc ctctctttgg attacatttg
     1501 gaagattatg acttactttt tgcagagaag ctagatttgc tgctaaagat tcgtgataat
     1561 gaatatgtat attggtccgg caaatatcgt cctagactga atggccaggg agtctaccct
     1621 agacctttgc agaatccttt gccaatatgg ataggcgttg gcggtactcc acaatcattt
     1681 gtgcgtgctg gtttgctcgg acttccgttg atggttgcga tcataggcgg cgaaacgcac
     1741 aggttcagac cacttataga tctttacagg aaggccggaa ggcaagctgg ctatacagct
     1801 gatcaattaa aagtaggagt acattcgcta ggatacgtag cacatagtac tcaagaggct
     1861 gtagatgatt tctatccagg ttatgcacgt accatgactg acattggtaa ggagcgcgga
     1921 tggacgaaga tgacacgtgc gagttttgat gcacagagga gtcctgaagg agcattgctt
     1981 gtaggggatc cagaagaagt agccgagaag ataattaggc acagtaaagc gctaggcggc
     2041 atctctagaa ttacgtttat gatgaaccct gcctcattac ctcatgaaaa actcatgcaa
     2101 gctactaaat taataggtac gcgcgtcgcg cctgcacttc gtgaagtggg tgaaatcggt
     2161 gagaactatg tgaaggtatc atgaagcaac ctaaaagaat agaagaacaa actcaagaag
     2221 gatgtgagat agccaatatt tgggaagttc ttggaagacg atggtcatta ttaattctaa
     2281 agaatctttg taataaagat gctattcgct tcaatgaatt gaaaaggtct ctatcaggaa
     2341 taagtagtac tgttttatca gatagactat tagagctcga acgtgaaggt cttatctcca
     2401 aaaaaattta tcccgaaata cctccaaaag tagaatatag tattacgcca caagcaaagg
     2461 agttagaaac tataataaag gaattgggaa aatgggcaaa tcgttggaag tcaccacaac
     2521 aattacaaaa gactaaatta taattataat aataataata ataatacgcc atcatcgtca
     2581 tgccataacg ttgtaaatca cttgatgaaa tttagtataa gaatgagatt gaggagaagc
     2641 ataagtagaa tacgatatag ctgcggctcc aatactattg taactactac agaatgatcg
     2701 atacaacttt aaccagatat tcgtttggat agcatataaa ctattttgtt gataaataag
     2761 atatctatgg taatcatcta tactatagta aatcgaatat agcgtggcat aattgcttta
     2821 ataatattat tataaagaac tgtgcttttt tttgtgatgg tcatagatat aggattttct
     2881 gacatgctta gtatagcgca gacaatcggt attgtatcca cattactgct aacgttatat
     2941 tactacagga gacaaataca aaaaatatca acagatattg aaactcaagt tctcaatgat
     3001 ttggatgaaa aggtccatag attaaatgag tcaatggtcg aacatccaga gctatcaaaa
     3061 gttgtaacta atcttccatc aatatctttg gatgctcaat attcttttga tgtacttaac
     3121 gtatggtcac atgcttatga tatgcgagaa agaaaagtac ttaacgacaa tgaatggttt
     3181 ggctgggtgc attggatgag aaacgccttt aaagaaggta caata
//
LOCUS       DASQSJ010000171         2006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_527213, whole genome shotgun sequence.
ACCESSION   DASQSJ010000171 DASQSJ010000000
VERSION     DASQSJ010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527213"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..424)
                     /locus_tag="VE223_03400"
     CDS             complement(<1..424)
                     /locus_tag="VE223_03400"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HZC20668.1"
                     /translation="MIFSEKEQELEQNKDTKYGEYYAFILVRDGEKTIHDTLGSLIWQ
                     TVRPTKIIVVNDGSGDGTEQIINSYKEEYPNIIEIINTYSKKRDYKRLPYLWNLSVEH
                     AEKSGYANGCEYHMISGGDMKYSPNYAETILAFMDQNKD"
     gene            complement(421..1209)
                     /locus_tag="VE223_03405"
     CDS             complement(421..1209)
                     /locus_tag="VE223_03405"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZC20669.1"
                     /translation="MAKQISQMIVNDSHVHLGYTPLLVSPVLERNLIQFKQKYNINKM
                     FVFPFETDVEETNKRVMAFAEKNRDRGIYAIYWIQKKCIEKDLETLRSNLGSAFIGVK
                     FHGAFELLPITASVYRQVLEFLDSQEAILIVHTGRYKDADRSSNTSYLHAMDAAKQYR
                     KIKLVMAHMGGTDTTIVKRALKDAADLENIFFDTSGITTPHVLEYAVRMIDERRIIFG
                     SDFPWCSFRAMLANVEDAEIDEKTKQSILLDNFDSLISKVIYTK"
     gene            complement(1193..1786)
                     /locus_tag="VE223_03410"
     CDS             complement(1193..1786)
                     /locus_tag="VE223_03410"
                     /inference="COORDINATES: protein motif:HMM:NF025953.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HZC20670.1"
                     /translation="MTLQSSFIDKSVKIGNNVKIGHFVSILENVSIGDNCKLEDGARI
                     CEGCSIDEGAVIGPNAVLRPYTKIGKHTIFGTSSVSDGDSEIGSYVTIQVLVLVAKGM
                     SIGDNCFIGPKTTITNTKEITHGRHGMKPDVKFTLLKTVIENDVNVGAACRILPGIRI
                     GRFSVIDMDTLVTKDIPAYSRVRGGKDKVGRIIGKTN"
BASE COUNT          539 a          413 c          326 g          728 t
ORIGIN      
        1 catctttatt ttgatccatg aatgcaagta tagtctctgc atagttagga gagtatttca
       61 tatctccacc agagatcatg tgatactcgc acccattagc gtatccagat ttttctgcat
      121 gttcgaccga gagattccaa agataaggta atctcttata atctcttttc ttgctatatg
      181 tattgatgat ttcgatgatg ttcggatact cttctttgta tgagttaatt atttgttcag
      241 ttccatctcc agaaccatcg tttacaacta taattttggt tggtcttact gtttgccaaa
      301 tcaatgatcc taatgtgtca tggatcgtct tttcaccatc tctaactagt atgaaggcat
      361 aatattcgcc atactttgta tctttatttt gttctagttc ttgttccttt tcactgaata
      421 tcattttgta tagatcactt tgctaatgag agaatcgaaa ttatctaaca aaattgattg
      481 ctttgttttt tcatctattt ctgcgtcctc gacatttgct aacattgctc taaaagaaca
      541 ccaaggaaaa tcgcttccga aaattattct cctctcatcg atcatcctta ccgcgtattc
      601 taggacatgt ggggttgtta ttcctgatgt atcaaagaag atattttcga ggtctgctgc
      661 atctttcaat gctcgcttta ctattgtcgt atctgtacct cccatgtggg ccataaccaa
      721 tttgatcttt ctatattgtt ttgctgcatc cattgcgtgg agataagagg tattggaaga
      781 cctatcagca tccttgtatc tgcccgtgtg gactatcaag atagcttctt ggctgtcaag
      841 gaattctagt acttgtctat atacagaagc agttattggc agaagctcaa aagcgccatg
      901 gaatttgacg ccgataaatg cactacccaa gttggatctt aatgtttcaa gatccttttc
      961 aatgcatttc ttctggatcc aataaatagc gtagatacct ctatctcgat ttttctcagc
     1021 aaatgccatt actctcttat tggtttcttc tacgtctgtt tcaaatggaa acacaaacat
     1081 cttattaatg ttgtattttt gcttgaactg gattaaattt ctttcaagta caggacttac
     1141 taataatggg gtataaccta gatgaacatg agaatcattt actatcattt gactaatttg
     1201 ttttgccaat tattctcccg accttgtctt tgccacctct tacacgagaa taagcaggaa
     1261 tatcttttgt tactaaggta tccatatcaa tgactgaaaa tcttccgatc cgtataccag
     1321 gtaatatcct gcaagcggct cccacattta cgtcattttc aattactgtc tttaggagtg
     1381 tgaattttac atctggtttc attccatgtc tgccatgagt tatttctttt gtatttgtga
     1441 tagttgtctt cgggcctatg aagcaattat cacctattga catgcctttt gcaaccaata
     1501 caagaacctg aattgtaaca taactgccta tttctgaatc accatcagaa acagaagaag
     1561 ttccgaatat cgtatgttta ccgatttttg tatatggcct taaaactgca tttggcccta
     1621 tgaccgcacc ctcatcaata gaacaacctt cacagatcct ggctccgtcc tctagtttgc
     1681 aattatctcc gatacttaca ttttcaagta tggagacaaa atgccctatt tttacgttgt
     1741 tccctatctt tacactttta tcaatgaaag aggattgtaa tgtcataatt catctcctat
     1801 aatcatgact catgcataac tcttctgctg agctggtttg acctatttat agttagctta
     1861 cacttgaact catctggaaa gtaatttgat atgttgctct agattccctc actcgcttat
     1921 ctatagctta gatcatctct agttcatgct agtgagattc gaagagctaa cagatgatca
     1981 atggaagctt gttagtacca tcaatt
//
LOCUS       DASQSJ010000172         2594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_458941, whole genome shotgun sequence.
ACCESSION   DASQSJ010000172 DASQSJ010000000
VERSION     DASQSJ010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_458941"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2026
                     /locus_tag="VE223_03415"
     CDS             <1..2026
                     /locus_tag="VE223_03415"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HZC20671.1"
                     /translation="GSLYAVSFASFLSSFLKMTSVIDNNYALLGIIPFDKLIAVASVA
                     TFAYINIKGTSETGKTGDIVTILQLGIIFTLIGAGFWSIHNHPNWKMNFSDFMPMGVA
                     GIIAAMGLTFIAFEGYEVIVQTGEEVKHPKKNIPRAIFISLTAVVVLYCLIAFVSIGA
                     IFPTGIPSWKFIGNHGELGIMKAAEFFLPYGSFIILGGGMISTLAALNATTFSSARVA
                     FAMGRHYNLPYQLSSIHPKNKTPHNAILISGITMAVMAYALPLAQIAIAAGVIFLLLF
                     TQVNIAVITIRRIYGDKLKYGFKTPLFPVIPIVGIFLKLGLAIYLLIIDPLSWFITII
                     WVAIGFAVYRLYTFRREIDHYAPIITSEGDMIRKDYRILIPYTPENPDRLIKYAIRAA
                     KENEGEVNILRVITVPQQTPLSAGIAYSEMARKSFRSLEEMLEKENIPNHYLVRIYHD
                     SIEAILATIEEQHIDLVITDFETFRSSKKLQTLVTRDVLAIRTTGNDFPLFESADQST
                     VIPRPSRTIEKKNMVILYDGGDHSDVVLKATSWLEHSGNFKVHVLSMKKKEHNREKEY
                     GNDAAGQIESLKREQFLSQIGVEFNELYLSKETEDNSEMLSKLCFSGLSSSQPDLVIL
                     GASIGKFSLFNNSDLQSLLEQLDCPVIVARSFTIPGMHYVKSWLMRMIRK"
BASE COUNT          838 a          453 c          511 g          792 t
ORIGIN      
        1 tggtagtctt tatgctgtaa gctttgcatc atttcttagc agctttttaa agatgacaag
       61 tgttattgat aataactatg cactattggg aattattccg ttcgataaat taatagcggt
      121 agcatctgta gcaacttttg cttatattaa catcaaggga acttctgaaa caggtaagac
      181 gggggacatt gtcacaatac tccagctggg tattatcttt actctaatag gagcgggatt
      241 ttggagtata cacaatcatc ctaactggaa aatgaatttt tcagatttta tgccaatggg
      301 agtagccggg attatagcag cgatgggatt gacatttatt gcatttgaag gatatgaagt
      361 aatcgtacaa actggggagg aggtgaagca cccaaagaaa aatattccaa gagccatttt
      421 catctcgttg actgcagtgg ttgttttata ttgtcttatt gcttttgttt caataggggc
      481 aatatttcca acaggaatac cgtcgtggaa attcatcggc aaccatggcg aacttggcat
      541 aatgaaggct gctgaattct tcctgccata cggatctttc atcatactgg gcggaggtat
      601 gatctctact ttagcagcct taaatgcaac taccttttct tcagccagag tagcgtttgc
      661 aatgggtaga cattataatc taccgtatca actaagctcg atacatccta agaataaaac
      721 tcctcataat gccatcttga tatcaggtat cactatggcg gtaatggctt atgcgcttcc
      781 tctagcacaa atagctattg cagcgggagt tatttttctg cttttattta cgcaggtaaa
      841 tattgcagtg attactattc gtaggatata tggtgacaag ctaaaatatg gattcaagac
      901 accgctgttt ccagttattc caatagttgg aatatttctc aagctaggcc tagctattta
      961 cctattgatt atagatcctc tgagctggtt tataactatc atatgggtgg caattggctt
     1021 tgctgtctac cgtctttata ctttcagaag ggaaatcgat cattatgccc caataataac
     1081 aagcgagggc gatatgatta gaaaggatta tagaatttta attccttata cgcctgaaaa
     1141 tcctgataga ttgataaaat atgctataag agcagccaag gagaatgaag gcgaagtcaa
     1201 tatattaaga gtaataacgg ttccacagca aacaccactt tcagcaggaa ttgcatatag
     1261 tgaaatggct aggaagtcat ttaggtcatt agaagaaatg ctggaaaaag agaatattcc
     1321 aaatcattat ctcgttagga tataccatga ttcgatcgaa gctatattgg caacaattga
     1381 agagcaacat attgatctag taataactga ttttgaaact ttccgaagta gcaagaaact
     1441 tcaaacgttg gtgactcgtg acgtgctagc tattagaaca actggcaatg actttcctct
     1501 atttgaatca gcagatcaga gtacagttat ccctcgtcca agtagaacaa tagaaaagaa
     1561 aaacatggta atcctgtatg acggaggaga tcattctgac gtcgtactaa aggcaaccag
     1621 ctggttagaa cattccggga atttcaaggt acatgtattg tcaatgaaga aaaaagagca
     1681 taatcgcgaa aaggagtatg gaaatgatgc tgctggacaa atagaatccc ttaagcgcga
     1741 gcaattcctt tctcaaattg gggttgagtt taatgaatta tatctctcaa aagagactga
     1801 ggacaatagt gaaatgttat ccaaattatg tttctcggga cttagctcat ctcagccaga
     1861 tcttgtcatt ttgggagcaa gcataggaaa attcagctta tttaataatt ctgatctaca
     1921 gtccttattg gagcaattgg attgtcctgt aatagtggca agatcattta ctattcccgg
     1981 tatgcactat gtcaagtcat ggcttatgag aatgattaga aaataaaagg aacaataaag
     2041 gcatagatac aacggaatct gattattttc catgtcaaaa aggtaactgt atattagaac
     2101 acgttaaaaa ttggttcgat ctttatgtag atttacataa tggaatgatt atatttgcta
     2161 aatgaacaca gtagtaaaaa attcgagaag tcatatattt gagcctctta gtccaacacg
     2221 gattctgtaa cttatccatc atcatgacgt cctatctgca ctgagtatat cttcttgctc
     2281 ctgtttgcta tcatatatat tctaccgcgg ttaataccgg acaaaaaatt catacatgaa
     2341 tcaataaaga ctataaaagt acgctcgtcc tagaataata cttgtattct tgcgatcttg
     2401 tgttgcaagt cgggtattcc cgacaaagca agtttgacaa aattctcaca acaaatgaat
     2461 tcgctaggat agctatctct ggagaccccg acatgctgat atattcacaa gttgtattgt
     2521 tgcagtatac catttacaaa atctattata ggacatttaa atctgcagat tattcataac
     2581 gatcaagtgc acat
//
LOCUS       DASQSJ010000173         4015 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_339963, whole genome shotgun sequence.
ACCESSION   DASQSJ010000173 DASQSJ010000000
VERSION     DASQSJ010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4015
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_339963"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            172..813
                     /locus_tag="VE223_03420"
     CDS             172..813
                     /locus_tag="VE223_03420"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HZC20672.1"
                     /translation="MVTNNIPKWKISGGWFDVCKCSIPCPCEFAQTPTYGDCDGVLVW
                     HIQKGQYGETSLDGLNVLGLGSFTGNIWAGNTKVTAALFFDEKANQQQREALQMIFGG
                     KAGGFMAEFAKLIGDLRGLDFAPIKFEVADDLASWSAEIPGKVVAKAEALTGPMTPPG
                     KRVITLNPPGSEVGPGAVATWGTAVTNEADAMGFKWKWNGRSSKYIPFEWNGP"
     gene            complement(891..1043)
                     /locus_tag="VE223_03425"
     CDS             complement(891..1043)
                     /locus_tag="VE223_03425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20673.1"
                     /translation="MGLVQIYLVAGEVVLTIGSTSVKPYSTNYIIEQSINYVSSKTLV
                     DATARS"
     gene            1133..1270
                     /locus_tag="VE223_03430"
     CDS             1133..1270
                     /locus_tag="VE223_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20674.1"
                     /translation="MVVCTGPEGDVAASKNLTALEGTVVVLVTLFMFVILISLKYFDK
                     N"
     gene            complement(1275..1643)
                     /locus_tag="VE223_03435"
     CDS             complement(1275..1643)
                     /locus_tag="VE223_03435"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HZC20675.1"
                     /translation="MDYDKLCKDILNLDPKVRYAGVCDETGTTKHGGQREGVKNLLTS
                     EETKKSNMQALARWGLRNALVPKIGKGKYSMAEYEKLKRITFPLEESELLLVTTEVDA
                     NHKKIINNILDLLRNPGKNM"
     gene            complement(1962..2096)
                     /locus_tag="VE223_03440"
     CDS             complement(1962..2096)
                     /locus_tag="VE223_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20676.1"
                     /translation="MLLKSMAFFIRVFVYDLDIITVAENETSLLPLPLLIGYDNNIHH
                     "
     gene            complement(2309..2539)
                     /locus_tag="VE223_03445"
     CDS             complement(2309..2539)
                     /locus_tag="VE223_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20677.1"
                     /translation="MLSDYKTDREEKVLELYNNEGKTTRGIAKDVRMSRNINIILKKH
                     VVNHGIAIVGNKKSSNEKATMLTSYSRVQELY"
     gene            2937..>4015
                     /locus_tag="VE223_03450"
     CDS             2937..>4015
                     /locus_tag="VE223_03450"
                     /inference="COORDINATES: protein motif:HMM:NF013713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20678.1"
                     /translation="MSISVAFFGLGIGALVIHLRKNKIKKENIPSKILQSIIAFAVSL
                     PIFLFLIGHVIPPSTSFLYLFFLTSSIPFFFAGMSMALVYLEMPREVTKLYFVDLAGA
                     AAATLILDSLLQGLGAESLILLIGILVSGPSTLASLALYRHRPIDYEFPIDVIERKSI
                     VYGIIFISASTVILVVNLSLNTLAIPPGENKGLHSYLADPSNNKHLSAQWNSFSRIDV
                     IGYNNYARSRSIGSILIDADALTPILKWNGSMSDIQWIKKYMDYLPYEISNANNNALV
                     IGSGGGEDILVALAGGTKNVTAVELNPLIVSAAKRFGGSSAGNLYDRKDVHLFIDDGR
                     RFISSTNSKFDKIVIKLVDSWAAQLA"
BASE COUNT         1153 a          762 c          767 g         1333 t
ORIGIN      
        1 gtgttactgt tatttgaagg aagccacatc aagaagatag tgtatcccta gtcctatctt
       61 cttcttttac atcatcctag agtggttgcg gtcttggtgt gatgatgttt actgcaattt
      121 ctcctatagt ttaatgttaa atatttccct tagtattagt agtatgtgca tatggtcact
      181 aataacattc caaagtggaa aatttctgga ggttggtttg acgtttgtaa gtgcagcata
      241 ccatgtccat gcgagttcgc acagactcca acatatggcg actgtgatgg tgtactcgtg
      301 tggcacatcc agaaaggaca atacggcgaa acgtcgcttg atggactgaa tgtattagga
      361 cttgggtctt ttactggcaa tatttgggct ggtaatacaa aggtaactgc agcactcttt
      421 ttcgatgaaa aggctaatca acagcagcgc gaggctctac agatgatttt tggcgggaag
      481 gcaggaggat tcatggctga atttgcaaag ctcataggag atctccgcgg cctagatttt
      541 gctccaatca aatttgaagt agcagatgac cttgcttctt ggagtgctga aataccagga
      601 aaggtggttg ccaaagctga agctttaaca ggacctatga ctccacctgg caaaagagta
      661 ataaccctta acccgcctgg tagcgaagta ggcccaggag cagttgcaac atggggtact
      721 gctgtaacaa acgaagctga tgcaatgggc ttcaaatgga aatggaatgg tagatcgagc
      781 aaatatattc catttgaatg gaatggtcca tagattagca ttggccaaag cagcgctgtc
      841 ataatcacaa atctcatcat cgtgtatctt ttattactag tcctctgccc ttacgatctt
      901 gcagtagcat ccacaagcgt tttacttgag acatagttta tggactgctc tatgatgtag
      961 ttggttgaat atggtttgac tgatgtgcta ccaatagtga gaacgacctc tcctgcaact
     1021 agatagattt gtaccaaacc catccactgg gtacggtcac ttgcgaactt gaaatctaaa
     1081 tatcaaaggc tgctgcaaat agccacggac cttttggcgg ttcggtcaga gtatggtagt
     1141 ttgcactggc ccagaaggag acgtcgcagc ttctaaaaat cttaccgcac ttgaaggaac
     1201 ggtcgtggtg cttgttacat tatttatgtt cgttattcta atcagtttaa aatattttga
     1261 taaaaattaa tctctcacat attcttacca ggatttcgaa gcagatctaa gatattattt
     1321 ataatctttt tatggttggc atctacctct gtcgttacca aaagtaattc agactcttct
     1381 aatggaaaag ttattcgctt aagtttttca tattctgcca tagagtattt gcctttaccg
     1441 atcttaggaa caagtgcgtt acgtaatccc catcttgcta atgcttgcat attcgacttt
     1501 tttgtttctt cagatgtaag caaattcttt acaccttcac gttgtccacc atgctttgtt
     1561 gtacctgtct cgtcacatac tccggcatat cgaactttcg gatctaaatt taggatatct
     1621 ttgcatagtt tgtcataatc catgtttaga taacaagtag tatagcagat taattctaat
     1681 aagtattatc ctcctataca aagtaatatt atcttctcgg gtttgccata ctttgaggta
     1741 tatttcatat gactagacga actaacaaat tgatagcaga aatatcaact gcaatagaag
     1801 gaccatcatc attttataac actataattt attatcatca tcgttggaaa gaaaaatcac
     1861 tttagcaatt gggggtttta ctaccttctc ttcatgtctt tactgccttg tacgttaaag
     1921 caatagattc taactatggt gccttagtat cgtgatccaa ttcaatggtg aatattatta
     1981 tcatagccaa ttagcagagg aagaggaaga agacttgtct cattctctgc tactgtaata
     2041 atatcaaggt cataaacaaa gactcggatg aaaaaggcca tacttttgag tagcattaga
     2101 gaagtgtact cttcgccctc tttatcgtct tcctactcct tctgacattc gtttaacatt
     2161 tggccaaata gaatcgcatt ttcttttcgg gtgagaaatt tccgatcact taatgtgtgg
     2221 agaaatagca ataactacaa atgcaccttt tttagtgatt agacgagtca gtacatctac
     2281 acgatgtatt ttctacatcg gtttgcaatc aatagagttc ttgtacccga gaatagcttg
     2341 taagcatggt agctttttca tttgaagatt ttttgttgcc tactattgca attccatgat
     2401 ttactacgtg cttttttaaa atgatgttaa tgtttcgaga catccttaca tcctttgcaa
     2461 tacctcgagt tgtcttgcct tcgttgttgt atagctctaa aactttctct tctctatcag
     2521 ttttatagtc acttaacaat gcattatgtt actataataa agaactcagc ctatatcttt
     2581 tgtctgatac cgcctgatat cagcattgtt atcctgatac ctctgatttc atctgttacc
     2641 attgcatatt ttgcagagct tgtacagaga taaagcagag gttataatgg ctaggccatg
     2701 aactctgaaa gggcactttg cttaatggta ttgcaatggt cctaaataga ataggttaca
     2761 ttaatctggg aaacatctat atcctacagg tcatgtgtta atttcaattg cgctttccac
     2821 caccgatgct aacttttctt cttattgcac tttttgtctt gtcattgagt gtgttattat
     2881 ttgagatcac tcttactaga atgttttcga tcattttatg gtacaactat gcttttatgt
     2941 ctatttctgt agcatttttt gggctcggaa ttggagcact tgtaattcac cttagaaaga
     3001 ataagataaa aaaagaaaat ataccatcaa aaatacttca atccattatt gcgtttgcgg
     3061 tttctctacc aatattctta ttcttaatag ggcatgtcat cccgcctagt acttcttttc
     3121 tttatctatt ctttcttacc tcctcaattc ctttcttttt tgcaggaatg tcgatggctt
     3181 tggtatatct cgaaatgcca agagaagtaa cgaaactgta cttcgttgac ttagcaggag
     3241 cagcagcagc tacacttatt ctggattctc tgcttcaagg attgggtgca gaatcgctga
     3301 tacttttgat tggcatatta gtttcagggc cttcaaccct cgctagttta gcactttatc
     3361 gccacaggcc aatagattat gaatttccaa ttgatgtaat tgaaaggaaa tcaatagtat
     3421 atggaatcat cttcatttct gcatccacag taatattagt agtgaatctt agcttaaata
     3481 cattagcaat acctcctgga gaaaacaaag gtctacattc ttacctcgca gatccttcta
     3541 acaataaaca cttatctgct caatggaact ctttttctag aatcgacgtc atagggtata
     3601 ataattatgc tcgatccaga tctataggct caatacttat tgatgctgac gcccttacgc
     3661 caatattgaa atggaatggt tctatgtcag atattcaatg gataaaaaaa tacatggatt
     3721 atcttccata tgaaatatcg aatgcaaaca ataacgcatt ggtaattggt agcggtggag
     3781 gagaagacat cttagttgcg ctggcaggag gtacgaagaa tgtcactgca gtagaattga
     3841 atccattaat agtatcggca gcaaaacggt ttggtggaag ttcagcagga aatctgtatg
     3901 accgaaaaga tgtccactta ttcatagatg atggaaggcg atttatcagt tctactaatt
     3961 ctaaatttga taagatagtc ataaagcttg tagattcttg ggctgctcaa ctggc
//
LOCUS       DASQSJ010000174         2020 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_249039, whole genome shotgun sequence.
ACCESSION   DASQSJ010000174 DASQSJ010000000
VERSION     DASQSJ010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_249039"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1423)
                     /gene="proS"
                     /locus_tag="VE223_03455"
     CDS             complement(<1..1423)
                     /gene="proS"
                     /locus_tag="VE223_03455"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HZC20679.1"
                     /translation="MSSLKQSGINVRKDASFSDWYIQVVLKTELADYAPVKGLIVLRP
                     YGYSIWETIRSILDKRFKETDHQNGFMPLLIPESLLSREEEHFEGFTPEVFWVTKTGN
                     NELSEKLALRPTSETLAYPIFSRWISSYRDLPMKINFWNSALRAEIKSTKPFVRTSEF
                     LWQEGHTVHATEKEAEQEVMLILEIYRELIEDHLSIPLLRGFKSDKEKFVGAKYTMTL
                     EGLMADGKALQMGTSHHLGQNFSKPFEIKYLGRDNQQHFAWQTSWGVSWRLIGALIMV
                     HGDDKGLVLPPRIAPIQVVVVPIFRDKDAKWIISKANEIAYDMKKSGIRVYVDHREEY
                     TAGWKFNEWEIKGIPLRINVGMRDIENDQAELVRRDTSEKSFVKRAILTESAISILEQ
                     IQSNLFLRAKRQLEDNITEVSNYDTLKSVLDKKGGFVSAGWCGDQSCEGIIKQETGAD
                     IRLIPFEGHDVSASKVCIYCSKPS"
     gene            complement(1483..1770)
                     /locus_tag="VE223_03460"
     CDS             complement(1483..1770)
                     /locus_tag="VE223_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20680.1"
                     /translation="MSEMSDVKYLVPVKQVEKTIKVSDQAKAELQSVGLMDEKGRLKL
                     KGVSPKMIKRMKVEAVDCPVLNTQIGFIQCYVCKNFHSRVTGQVYCKGEPL"
BASE COUNT          570 a          437 c          324 g          689 t
ORIGIN      
        1 ttgaaggttt gctacaataa atacagactt tggacgcaga aacatcgtga ccttcaaatg
       61 gaattagtct gatatctgct cctgtttcct gttttattat accttcgcaa ctttgatccc
      121 cacaccaccc cgctgagaca aatccacctt tcttatcaag aactgatttt agagtatcat
      181 agtttgagac ttcagttata ttgtcttcca gttgtctctt agctctaagg aacaaattac
      241 tttgaatttg ttccaaaatt gaaattgcag attcagtcaa aatagcgcgt tttacaaagg
      301 atttctctga tgtatccctt ctaactaatt ctgcttgatc attttcaata tctctcattc
      361 caacattaat tctaagaggt atacccttta tctcccattc attgaatttc catcctgccg
      421 tgtattcttc tcgatggtca acatatactc tgatgcctga ttttttcatg tcatatgcaa
      481 tttcatttgc tttagatata atccatttag catccttatc tctgaaaatc ggtacgacta
      541 caacttgaat aggggcaatt ctgggcggaa ggacaagccc tttatcgtcg ccatgaacca
      601 ttattaatgc tccaatcaac ctccaagaga caccccaaga ggtttgccat gcaaaatgtt
      661 gctgattgtc ccttcctaga tattttattt caaaaggctt tgaaaagttt tgtcctaaat
      721 gatgcgaggt gcccatctgt aaagccttcc catctgccat taagccttcc aaggtcatag
      781 tatatttcgc gccaacaaat ttctctttgt cgctcttaaa tcctcttaat agtggaatgg
      841 atagatgatc ttctattaac tcacgataaa tctccaagat caacataact tcttgttccg
      901 cttctttttc tgtagcgtga accgtatgcc cttcttgcca caggaattca gacgttctaa
      961 caaatggctt agttgatttt atctctgccc gcagagccga gttccagaaa ttgattttca
     1021 ttgggaggtc tcggtaactg ctgatccatc tggaaaatat tggatatgca agtgtttcag
     1081 atgtaggacg taaagcaagc ttctctgaga gttcgttatt gcctgtcttc gtaacccaaa
     1141 aaacttcagg agtaaacccc tcaaagtgtt cttcttcacg cgaaagtaaa ctctcaggga
     1201 tcaacaaagg cataaagcca ttttgatgat ccgtttcttt gaacctttta tccagaatag
     1261 atctaatggt ttcccatata ctatagccat agggtcgaag aactatcaaa cctttgacag
     1321 gggcatagtc tgcaagctct gtttttaaaa ccacctggat ataccaatcg ctaaaactcg
     1381 catcctttct tacgtttatt ccactttgtt ttaaagaact caatattatt gacacggaga
     1441 attattggct ttatcaagtt ttagttttaa tgattctata tgttatagag gttcgccttt
     1501 acaatatact tgaccagtaa ctctactatg aaagttcttg catacgtagc attgtatgaa
     1561 tcctatctgt gtattgagta ctggacagtc aaccgcttct actttcatgc gctttatcat
     1621 ttttgggcta actcctttta gctttaatct acctttttca tccattaagc caacactttg
     1681 taactcagct tttgcctgat cagacacctt gattgttttt tccacttgtt ttactggtac
     1741 taagtacttt acgtctgaca tctcactcat gtatagtaac aagcataata agtatatgac
     1801 cgttcctaag atgcacaatt ttgagcacac acttacatgc catacatagc aattttaatt
     1861 tcccatattt cgcgtacagt tccatctaga tgtatgaaaa tatcgcacat tagtaaccat
     1921 atcctgaata cagtaaaaat tttagtctaa aggagatgag ttgttggaaa cctaataatt
     1981 ctcttcttat aacagcctgg acatgtaaag acaagtggtg
//
LOCUS       DASQSJ010000175         2531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_101526, whole genome shotgun sequence.
ACCESSION   DASQSJ010000175 DASQSJ010000000
VERSION     DASQSJ010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2531
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101526"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..752)
                     /locus_tag="VE223_03465"
     CDS             complement(<1..752)
                     /locus_tag="VE223_03465"
                     /inference="COORDINATES: protein motif:HMM:NF015012.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-dopachrome tautomerase-related protein"
                     /protein_id="HZC20681.1"
                     /translation="MPTGVTVSHKGRIFVNFPRWGDDVPFTVSEIRDGQPIAYPDKVI
                     NQADPNDQAAALVSVQSVVVDPVDRLWILDTGSPMFQPTKYGGPKLVCIDLSSDKVIK
                     KILIPQDVALPSTYLNDVRFDLRRGSREGLAFITDSSQNGPNGIIVVDLESGKSWRRL
                     HDHPSTKAEQLQTFLPIVEGRPFLEHQSDGSVKQGASMGSDGIAISSDGARLYYCPLG
                     SRKLYSVDTDALANQSLDEREVGSSVTNEGDRG"
     gene            complement(1923..>2531)
                     /locus_tag="VE223_03470"
     CDS             complement(1923..>2531)
                     /locus_tag="VE223_03470"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20682.1"
                     /translation="PKDSRLKRNHTLIQDDLRGKNNCLSRQSIAKFIKNLTHIYIPTI
                     SSILIYHLQKDQESTNDINVKEEEAQNSATTNKINKVLIVDDEPDVTLSLKTGLEDNG
                     FIVESFNDPVSALSNFRAGSYDLVLLDIKMPRINGFELYEKIKQIDSKVKACFITANE
                     VYYESLREIFPTMENCDCYVKPIKINDLVRRVKAQIEGIGQV"
BASE COUNT          695 a          525 c          481 g          830 t
ORIGIN      
        1 cccctatcgc cttcgttagt cacgctggaa ccgacctctc gttcatcaag cgattggttg
       61 gcgagagcat ctgtatctac actgtagagc ttgcggctgc caagcggaca ataatacaga
      121 cgggctccat cagagctgat agcgatgccg tctgagccca tactagcgcc ctgcttcact
      181 gagccgtcgg attgatgctc caaaaacggt cgtccttcaa cgatcggtag aaatgtttgc
      241 aattgctctg ccttcgtaga aggatggtca tgaagccggc gccagctctt acctgactcc
      301 aagtctacca caatgatccc attaggtccg ttttgtgaag aatcagtaat aaacgccagt
      361 ccctctctgc ttccacgtcg caaatcaaag cgtacgtcat tgaggtatgt gctcggtaga
      421 gccacatcct gtggaattag tatctttttg atgaccttat ctgaactcag atcgatacag
      481 accagcttcg gtccgccgta cttggttggt tggaacattg ggctgccagt atcgagaatc
      541 cagaggcggt cgactggatc aactacgacc gactgtacgg acacaagtgc cgcggcctga
      601 tcgttgggat cggcttgatt tattacctta tcagggtagg ctatcggctg accatctcgg
      661 atttcagaga ctgtaaatgg aacgtcgtcg ccccaccttg gaaagtttac aaagatacgc
      721 cctttatgcg acaccgtcac tcctgtcggc atcgcgccgc taaagtaagt gactggctcc
      781 aatgcgccaa gcggctcgtc tgctgctaac tcctccgcag aaaagctgct cgtcgtatct
      841 tttcgattac tattactggt tgacgtacgt atttctcccc atcgctcgcc ctagaaaatg
      901 gtgactatag tattgagatt tctactatag ctgaatacaa tcatgagaag cttcattatg
      961 ttgactttgg atatatgttc tattgtgttc attaactttg ttccaaaaac tccaaacact
     1021 gatggatatg catttgttcc taagacctca aataaccttt tcatttcgtt aagtaaacat
     1081 gtcaaatatt cgatatatcc ctttatggtt tgacgcctgg cctttaggct tcatttgagt
     1141 tcttttgttg ctattgatta ccctttcttc aatccgtagc actccggttt tgcatgagtt
     1201 tttcttatct gtagatctac caccaataaa tctaagataa agaaaatcag tattagctat
     1261 cgtttgtgtc ttaggttttg caagctgata gaaagttaat cgaatgctct aatcttgtcg
     1321 cactttgctg ttgtattggc tattgactac aaaactctta tcctttgcat aacccattct
     1381 agttagcatt cacgtttaat ccgatattgt agtgaatctc tcactattac caaatttttg
     1441 tatatttgcc atttactttg atgatattta atagacatag taattcttgt acaaataact
     1501 gcatgtgaac tattgcattt gttttaaata aggaaatcat aatctttttc ttttttgtag
     1561 atgatgatat tcgtatgttt aaagatcccg tatgcaatat gatggttgac gaaaagaaag
     1621 cacagcatat ctctgaatta aatagccaaa gagtgtattt gtgttcagca cactgcaaaa
     1681 gccaatttga taagaatcca agtaaatatg gctattagcg cacaatcata atgatacagc
     1741 taaaattaat ctaggagaga tctctagcta aaagagtaac aatgatttgt tactgacggt
     1801 atatacaatg aaccgaaggc tgtaaacata atcaggtggt agtattatat tctgcacgaa
     1861 tagtagccag agatatttta tctcatatat ataagctcaa taattcattt cgatctgaga
     1921 aatcaaacct gtcctatccc ttcgatctgt gccttcacac gtcttactag atcatttatc
     1981 ttaattggtt taacataaca atcacaattt tccatggttg gaaatatttc tcttagtgac
     2041 tcataataaa cttcatttgc tgtaataaag catgctttaa ctttgctatc tatctgcttt
     2101 attttttcat atagctcaaa gccattaatg cgtggcatct taatatctaa aagcacaagg
     2161 tcgtaggaac cggctctaaa attagataat gctgagacag gatcgttgaa ggactctact
     2221 ataaacccat tatcttctag tcctgtcttt aaagagagag taacgtcagg ttcatcatct
     2281 acaatgagta ctttgtttat cttatttgtt gttgcagagt tttgtgcttc ctcttccttg
     2341 acattgatat catttgtact ttcttgatcc ttttgcaaat gatatatcaa gatagaactt
     2401 atagtaggta tatagatatg tgttagattc ttaatgaact tggcaattga ttgtcttgag
     2461 aggcaattat tcttgcctct gaggtcatct tgtatgagcg tatgattacg cttcaatctg
     2521 gaatctttag g
//
LOCUS       DASQSJ010000176         3172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_459489, whole genome shotgun sequence.
ACCESSION   DASQSJ010000176 DASQSJ010000000
VERSION     DASQSJ010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459489"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            498..1106
                     /locus_tag="VE223_03475"
     CDS             498..1106
                     /locus_tag="VE223_03475"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HZC20683.1"
                     /translation="MKYALAYLRVSTEEQTVLNQKMALQTWAHEHSYLILDFFEDSAV
                     SGKIPAVKRRGFQDMLDILKAAAVDAILVYELSRVGRTFWDTLDSIKAIEEYAPLISC
                     SPRETFLQTTEPSIRKLMIGILTWVAEREREMLVQRTRDGMLRARAAGKGIGRPQRKV
                     DKNVLISLLAENQPRCKIARTLGVSKATLYKWLRETSIKSQI"
     gene            complement(1090..2436)
                     /gene="bioA"
                     /locus_tag="VE223_03480"
     CDS             complement(1090..2436)
                     /gene="bioA"
                     /locus_tag="VE223_03480"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: protein motif:HMM:TIGR00508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HZC20684.1"
                     /translation="MRIHDADKEFVWHPYTQMRDWNSSDNKVIVRGKGFYLIDTEGNK
                     YLDGNASMWCNVWGHSTNKVIDTMVRQLRTIPHSTLFGLSNAPSAKFAEKFVKVAKGM
                     QKIFYSDNGSTAVEVAMKMALHYWINKGNREKKRFISLEHGYHGDTAGAMSLGYIAKY
                     FRAYKPLLTRVHKAPSPYVADTLSKTEKGIVEDCIEQTERILKEYSSECSAFVMESGA
                     QIAGGVIIYPSDYQMKISELCKKYDVLLILDEIATGFGRLGNMVEYLAQGSRPDIVCF
                     GKALTAGYFPLAITATTNKIFNAFLGCYSENKQFYHGHTFTGNAIGCAAALANLELYK
                     KTNLIPKIRRNSEYLAKRLNKFKELSIVKNIRHKGLLAGLDLSWKGKPIKMKHKGIIN
                     YYIMQESLKEGVFIRPLGNTMLIIPPLAINRYELEKLLDVQFSILKKIQVNIRSGF"
     gene            2478..>3172
                     /gene="bioD"
                     /locus_tag="VE223_03485"
     CDS             2478..>3172
                     /gene="bioD"
                     /locus_tag="VE223_03485"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HZC20685.1"
                     /translation="MKGLFITATDTGVGKTIIGAALASTIRRSGIDVGVMKPFASADK
                     IFSRKHKSEDVALLAKAAQVTDPDEQINPFFYPVPTAPFVASKLNFKNKVNISYALKL
                     YHELSAKHDFMIVEGIGGVMVPLTKKKYIANFAKSLGLSTIIVSSPKLGTINHTLLTI
                     KVCKFFGLNPIGIIINGIEEKNDSLVKDKVIETIEELSDVRILGVIPFLKTLKLSKMR
                     LAIERNLDINEIL"
BASE COUNT          994 a          580 c          580 g         1018 t
ORIGIN      
        1 ttgtatctcc aattttatat aaatatcccc ctagatgaag gtagtgctaa aataagcccg
       61 atgtttcaaa actagagttt agaaagaacg gacaaacaat aggcttacaa tcaactatta
      121 acaatcacta aaaaaagacg cccggtacca gcattttatg ccccagaaac gctagttgtt
      181 catagataga tattattatt tttaggagca atgttttctt gatatgatca actataaaaa
      241 tggtcaaaag agtaccataa atctgtctac tattgtctac tatttttgtc ctttcttagc
      301 caaagacgaa tttcgtttat tacacatgtt tacataggtg tataaaaaag gacccattag
      361 tagactgact attaaataga accttttttt taccgatgat atgctaacgt tcaactacgt
      421 tatgtaccct tttttgacac attgttatat ctttttgaca agatgttaat taagcgaaac
      481 catattattt attcagagtg aaatatgcat tagcatactt acgagtaagc acggaagagc
      541 agacggttct gaatcaaaaa atggcccttc aaacatgggc tcatgagcat agttatctta
      601 tattggattt tttcgaagat tcggcagtca gtggtaagat tccagctgtt aaaagaaggg
      661 gtttccaaga tatgttggat attcttaaag cggcagctgt tgatgcaata ttagtttatg
      721 aactatcaag agttggtaga actttttggg ataccttgga ttctataaaa gctattgaag
      781 aatatgcacc tcttatttcg tgttctccaa gagaaacctt tctacaaacg acagagccca
      841 gtataagaaa actgatgatt ggaatactta catgggttgc ggaaagagag cgagaaatgc
      901 tagtgcaacg tactagagat ggaatgttaa gggcgagggc cgcgggaaaa ggaatcggaa
      961 gaccgcaaag aaaggtcgat aaaaacgtcc taatcagttt acttgcagaa aaccaaccgc
     1021 gttgcaagat agcaagaaca cttggcgtat cgaaagcgac gttatataaa tggcttaggg
     1081 aaacatcaat taaaagccag atctaatgtt tacttgaatt ttctttaata ttgaaaattg
     1141 aacgtccaat agcttttcta attcatatct attaattgcc aatgggggaa ttattagcat
     1201 ggtatttcct agaggtctta tgaagacacc ttctttcaat gattcttgca tgatataata
     1261 gttaataatc cctttgtgtt tcattttgat aggcttgccc ttccaagaga gatctaggcc
     1321 tgctaaaagt cccttatgac gaatattctt aacgattgat agttctttaa acttgtttaa
     1381 acgctttgcc aaatattcac tgtttcttct tatctttgga attaaatttg ttttcttgta
     1441 taattcaagg tttgctaacg ccgcggcaca tccgatagcg ttacctgtga atgtgtgtcc
     1501 gtgatagaat tgtttatttt cggaatagca gccaagaaac gcgttaaata ttttatttgt
     1561 tgtagctgtt attgcaagcg gaaaatatcc tgcagtaagt gcctttccaa aacaaacaat
     1621 atctggtctc gacccctgtg ctaggtattc caccatattg cccaatctcc caaatcctgt
     1681 ggcaatttcg tcaagtatca gtaaaacatc atatttttta caaagctcag agatcttcat
     1741 ttgataatct gatggatata tgattacacc tccagcaatt tgtgcgccgc tttccatcac
     1801 aaatgcggaa cattcagaac tgtattcttt aagaatcctt tctgtttgct ctatacaatc
     1861 ttctactata cccttctcgg tctttgataa tgtgtctgcg acataaggac taggggcctt
     1921 atgtacccga gtcagcagtg gtttgtatgc acgaaaatat ttagcaatgt aaccaagaga
     1981 cattgcgcct gcggtgtcac catggtatcc atgttcgagt gaaatgaatc tctttttttc
     2041 acggtttcct ttattgatcc agtaatgtag cgccattttc attgctactt caactgcagt
     2101 agagccgttg tctgaataga agatcttttg catccctttc gctaccttga caaatttttc
     2161 tgcaaatttt gcagaagggg cgttgcttaa gccaaaaaga gtcgaatgcg gaatagtcct
     2221 gagttgtctc accattgtgt ctatcacctt gtttgtacta tgtccccata cattgcacca
     2281 catgcttgca tttccgtcaa gatatttgtt accttcagta tctatgaggt aaaacccttt
     2341 tcctctgaca atcactttgt tatcgcttga gttccaatct ctcatctgtg tatatggatg
     2401 ccacacgaat tctttgtcag catcatgaat tctcaacgac aattaaactt aagaattatc
     2461 gtactaataa cattttcatg aaaggtctat tcataacagc aacagataca ggtgtaggta
     2521 aaaccattat tggcgcagct ctagcctcaa caataagaag aagtggaata gacgtgggag
     2581 ttatgaagcc gttcgcatct gctgataaga tcttctctag aaaacataaa tcagaagatg
     2641 ttgcattatt agcaaaggcc gctcaagtta ctgatcctga tgaacaaata aatcctttct
     2701 tttatccagt tcctaccgct ccctttgttg cttcaaaatt gaatttcaaa aacaaggtaa
     2761 atatatctta tgcattaaaa ctttatcatg aactgagtgc aaaacacgat tttatgattg
     2821 tagagggaat tggcggtgtt atggtacctt tgactaaaaa aaaatacata gccaattttg
     2881 ctaaatcact tgggctctcg acgatcatag tttcaagtcc aaaattggga accattaacc
     2941 atactttact cacaataaaa gtttgcaaat tctttggatt gaatccaatc gggattatta
     3001 ttaacggaat tgaagaaaaa aatgattctt tagttaaaga taaggtcatt gagacaattg
     3061 aggaattaag tgatgtcagg atcctaggtg ttataccatt tcttaagact ctaaagctga
     3121 gcaaaatgag acttgcaatt gaacggaatt tagacattaa tgaaatattg tt
//
LOCUS       DASQSJ010000177         4141 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_459614, whole genome shotgun sequence.
ACCESSION   DASQSJ010000177 DASQSJ010000000
VERSION     DASQSJ010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459614"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            121..2877
                     /locus_tag="VE223_03490"
     CDS             121..2877
                     /locus_tag="VE223_03490"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZC20686.1"
                     /translation="MNDGEAADTTCDSTIKKFRREGFTSLTTIQEKALPVVTRKINCL
                     LVAPTGSGKTEAAVLPVFTILSSDKGNHTGKIRALYITPLRALNNDVFRRIIKYAESE
                     KLRIEIRHGDTTATAKKKIVENPPDILITTPESLAVVLTGKKMLDALKDLEWIIVDEV
                     HELVPNERGAHLSIGLERLEAVSLQQVTRIGLSATLGNLDEAAKFISGTTRKYAVIVD
                     NSARKYDIDVKFVKGSINNVAHFVIEYIKSNKIEGSVLLFANTRDEAEYIGTILKNQN
                     DIKVDVHHGSLSKDIREETEGRLREGFVDIVVCTSSLELGLDIGSIELVIHYGSPRQV
                     SKLMQRIGRSRHMHGNSAKGLIVTNNPDDEIEALAIVQRMKRQSIEEQLMHNGALDVV
                     AHHLVGLALQKRGLIRLEDAFDLITRAYLFSRISFYDIEGCLDILDASRIIKYDRKDR
                     SYKLRLKAYKYYFENLSMIPHVLKFEVVDSISRRRIGMLDQQFVGDYGEKGNVFVLKG
                     SQWRIISVDDARMQVNVEPMQGVAINIPYWVGEMIPVDYKTAEQVGVIRNQAAKKTVK
                     LFTSIIDDTINSLKVVPDSKNIVVESSIARNIVVIHSTFGSKVNNTLASLLSTILSSN
                     LGYIVETRSDSYRIMLTSNARIRKGHVESSFNDTYDFEAVIVTSFAGTHHINWKVWMV
                     AKRFGMVSREAVYDKKAARLIYDRYAKTPISKESIRELLHDKYDISQTQKILMSLKDG
                     NIKLHWFDIDEFSELAKPILEHSTKFSAMPLSIEKGVIELVKERLEKTKHRLICIRCG
                     KWERTMETKEMPETISCSRCGSKLITTTFLSDDDLTKIIVKRLTGSKLSRDENHKFDR
                     AWKVASLINNFGRKALIVLAGYGIGADTAARILRNYVDDDEIYRNIYEAERQYVMTRR
                     FWND"
     gene            3125..3922
                     /locus_tag="VE223_03495"
     CDS             3125..3922
                     /locus_tag="VE223_03495"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZC20687.1"
                     /translation="MEKDISIKDDVSKNEQVTPEIDGDTNTTIKVTEKDIVSASKTGQ
                     VLIGREDCGDDDKYLSDGKSLHINDGKILSLLHQETGMNYYSFTSLMRKLNLHQQSLA
                     RALNRLQDVGLIDKSNKGYALTKTGILMLSKSSIVKHMDKTRKGKEYVPLFQTFIDIK
                     IRAKEIVHSLIGKWFKSLRWGGLIENETECVLQWISDDNSFQINLRVMSGYVTIETNA
                     TSDKEKIEAMAGSCRIFEQIIRILQNRFMDTVFYPINLIYDVARQNN"
BASE COUNT         1472 a          631 c          836 g         1202 t
ORIGIN      
        1 actcgtttat atgggtggca gtaggacttt ttatcgctgg cctcttcaca ataatggttt
       61 acggaagatc aagttctaaa gaaaaacaat atcctaggca acaaggaacg tcttctgaca
      121 ttgaatgatg gagaggcagc tgatactact tgtgattcaa ctattaagaa attcagaaga
      181 gagggcttta cttctttaac gacaattcaa gagaaagcat tgccagttgt tacgaggaaa
      241 attaactgct tgcttgtcgc tccaactggt tctggtaaaa ctgaggcagc agttttgcct
      301 gtcttcacaa tattatcttc tgataaagga aaccatacag gtaagatccg agcgctctat
      361 attactcctc tgagagcatt gaataatgat gtatttaggc gaattatcaa atatgctgaa
      421 tctgaaaagc taagaataga aattcgacat ggtgatacaa ccgctacagc taaaaagaaa
      481 attgtagaaa atccgcctga cattttgatc actactcctg aatctctcgc agtagtactg
      541 acaggcaaga aaatgcttga cgctctaaag gatctggaat ggatcatagt tgatgaagtc
      601 catgaacttg tcccaaatga gcgtggtgca catctatcaa tcggccttga gagattagag
      661 gcagtaagtt tgcagcaggt tacaagaatc ggtctctctg caaccttggg taatttagac
      721 gaggctgcca aattcatctc tggaactacc agaaaatatg cggtgattgt agacaactct
      781 gcaagaaaat acgatattga tgttaaattt gtaaagggtt caattaataa cgtagctcac
      841 tttgtgatag aatatataaa atcaaataaa atagagggat cagtattgct atttgcaaat
      901 acacgagacg aagctgaata tataggcacc atattgaaaa atcaaaatga tatcaaagta
      961 gatgtacatc atggatcttt atctaaggac atacgggaag agacagaggg aagattaaga
     1021 gaaggttttg tggatatagt agtttgtact tcatcactgg aattgggttt agacatcggc
     1081 tcaatagaac tagtgatcca ctatggctca ccaagacaag tttcgaagtt aatgcaaagg
     1141 attggacgga gcagacacat gcatggaaat tccgcaaaag gtctgattgt aacaaacaat
     1201 ccagatgatg aaatagaagc actagcaatt gtccaaagaa tgaaaagaca atcaattgaa
     1261 gaacagttaa tgcataacgg ggccctggat gttgtagctc atcatctagt tgggttggcc
     1321 ttacaaaaga gaggtctaat tagacttgaa gatgcctttg atcttataac aagggcatat
     1381 ctgttctcaa gaattagttt ttatgatatt gaaggatgcc ttgatattct agatgctagc
     1441 cgtataatta agtatgacag aaaagataga tcatataaac taaggctgaa ggcgtataaa
     1501 tattattttg agaatttgtc tatgattcca catgttttaa agtttgaagt tgtagattcc
     1561 ataagtagac gtagaattgg aatgttagac cagcaatttg taggtgatta tggagagaaa
     1621 ggaaatgtct ttgtattgaa gggttcacag tggagaatta tctcagttga tgatgccagg
     1681 atgcaagtaa atgttgaacc catgcaaggc gtggcaataa atattcctta ctgggttggg
     1741 gagatgattc cagtagatta taaaactgcc gagcaagttg gcgttatacg taaccaggct
     1801 gccaagaaaa cagtaaaact tttcacttct atcatcgatg atactattaa ttccttaaag
     1861 gtggttccgg attcaaaaaa tattgtagta gaaagttcga ttgcaagaaa catagtagtg
     1921 attcactcca cgtttggttc aaaagtaaat aataccttag cgtctttgct atcaacaata
     1981 ctgtcatcca atctaggtta catagtggaa acaagatctg attcttatag aattatgtta
     2041 acatcaaacg caagaatacg gaaaggtcat gttgaatcca gttttaacga cacttatgac
     2101 ttcgaagcag ttattgtcac ttcattcgcc ggaacccatc atattaactg gaaagtttgg
     2161 atggtcgcaa aaagatttgg tatggttagc agagaagcag tatatgataa gaaagcagca
     2221 cgtttaattt atgatagata cgcaaagacc ccgatcagca aagaatccat cagggaactg
     2281 ctacatgata aatatgatat ttcacaaaca caaaaaatct taatgagttt aaaagatgga
     2341 aatataaaac ttcattggtt tgatatagat gaattctcgg agttagctaa accgattctt
     2401 gaacattcta caaaattctc tgcaatgcca ctaagcatag aaaaaggtgt cattgaactt
     2461 gtgaaggaaa gattagaaaa aacaaagcat agattaatct gtattcgatg tggaaaatgg
     2521 gaacgaacta tggaaacaaa agaaatgcca gaaactattt cctgctccag atgtggatct
     2581 aaattaatca caactacctt cttgtccgat gatgatttaa ctaaaattat tgtgaaaaga
     2641 ctcacgggaa gcaaattatc tagggatgaa aaccataaat ttgatcgcgc atggaaagta
     2701 gcgtcgctta ttaataattt cggcagaaag gcattaattg tgttagctgg ttatggaata
     2761 ggtgcagata ccgcagcgcg tattctacgt aattatgttg atgatgatga gatatatcga
     2821 aatatatacg aggctgaaag acagtatgta atgacccgta gattctggaa cgattgatat
     2881 tttgaattgt attataattc actggtggat cattaactaa tggattaaag gttatattta
     2941 ctgttgttat cttaataaag tgtcaaaaga atcgactatc acttgatttc gatcttgtat
     3001 ttggatgtgt aacttttaat attatcaaat gagtattgag cctattgata gttgtttatg
     3061 cctcactaac ttaccacact gttactttac aatttatatc ttgcaaatta taagaatggt
     3121 ataattggag aaagatatat cgataaaaga cgatgtgtcc aaaaatgaac aagttactcc
     3181 agaaatagat ggagatacta acactactat taaagtaaca gaaaaagata tagtatctgc
     3241 cagcaagact gggcaggtat taattggaag agaagattgt ggtgatgatg acaagtattt
     3301 atctgatggt aaaagcttac acataaatga tggcaaaatc ctctccttat tacaccagga
     3361 aactggaatg aattattatt ccttcacaag cctaatgcgt aagttgaacc ttcatcaaca
     3421 aagccttgca agggccttaa ataggttaca agatgtagga ttaattgata aatctaacaa
     3481 gggttatgca ctaaccaaaa ccggaatatt gatgctatca aaaagtagta tagtaaaaca
     3541 catggataaa actagaaaag gaaaagaata cgttccgcta tttcagacat ttattgatat
     3601 taaaataaga gccaaagaga tagtgcatag tttaatagga aagtggttca aaagtcttcg
     3661 ctggggtggc ttaatcgaaa atgaaacgga atgtgtgctt caatggataa gtgatgataa
     3721 ttcatttcag atcaacttaa gagtgatgtc aggatatgtt acgatagaga ccaatgctac
     3781 ttcagataag gaaaagatcg aggcaatggc tggctcctgt agaatatttg agcagatcat
     3841 tagaatattg caaaacagat tcatggatac ggttttctat cctataaatc ttatctatga
     3901 tgtggctaga caaaacaatt agaaccatct aatagaatag atgtatatat atttaatagt
     3961 agatttactt ttagataaat acatataata aaagattgtc agccttctgg tcaccaagtc
     4021 acaacctttg caatatcatg atttactgag tcaattattt aatcatatgt acttagaacc
     4081 tttgatggag gctacactat ttaacactat ttctagaaat tagaatatca tagtatgaac
     4141 g
//
LOCUS       DASQSJ010000178         2566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_101711, whole genome shotgun sequence.
ACCESSION   DASQSJ010000178 DASQSJ010000000
VERSION     DASQSJ010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101711"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..128)
                     /locus_tag="VE223_03500"
     CDS             complement(<1..128)
                     /locus_tag="VE223_03500"
                     /inference="COORDINATES: protein motif:HMM:NF028523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20688.1"
                     /translation="MQYKMPSHESASQNFMAVILHSLPSESALTKIEYEGPRIALYS"
     gene            326..724
                     /locus_tag="VE223_03505"
     CDS             326..724
                     /locus_tag="VE223_03505"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HZC20689.1"
                     /translation="MENKDSHASGQRGGFGDSGSTDVGYRSDRGYGGRGRGGFGGPRP
                     FRPAPVKVGEEFDVKIESMSKRGDAGVAKVEGLVIFVAGTKVGDSVRIRITKVGRGYA
                     TAEIASQSESASTGATIEQNKLDESTTDEQ"
     gene            822..1886
                     /locus_tag="VE223_03510"
     CDS             822..1886
                     /locus_tag="VE223_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-1-phosphate dehydrogenase"
                     /protein_id="HZC20690.1"
                     /translation="MSSPPTHLMELPREILIGDGVISKLGSFITDLDESASKIAIITG
                     NKVKTRAGAACKSSLFEYSLQDSWYIADDASMNSVNKLQTRIRNSIPDFIIGLGGGRS
                     VDVAKMTAFKLNKPLVSVPTSASHDGISSPFVSIRGIDKPHSVKVNTPIGVLADTHLL
                     SQAPLRLLASGCGDLVAKLTAVKDWELARDETNEYFGSYAANLAYMSAKIILDDSQKL
                     LQKNGFGIRTVVEALISAGVAACIAGSSRPCSGAEHLFSHALEYIAGQNCGLHGERVG
                     LGTIMMAKLHGLNWERIVKTLENVGAPTNAEQIKLNEDQIVKSLLTAQSLRPDRYTIL
                     SKLKLDKQSALELAKSVYVL"
     gene            complement(2317..>2566)
                     /locus_tag="VE223_03515"
     CDS             complement(2317..>2566)
                     /locus_tag="VE223_03515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20691.1"
                     /translation="EKIKFKLEESTLEIEMSEETFLSEGLQVIKRAIANDIFKFVPLL
                     NNVKFIESYKQSTPPLQSQQQSKSEEKPVNSTIENKSA"
BASE COUNT          845 a          385 c          555 g          781 t
ORIGIN      
        1 gagtaaagag caattcttgg gccctcatac tcaattttgg taagcgcaga ttcactggga
       61 agactatgca gtattactgc cataaaattt tggcttgcag attcatgtga tggcatttta
      121 tattgcatat attttcaaac attgaatgag ttattaatta acacaaaacg aatcatatgg
      181 tgataataca ttcctcaatg agtgattcca tttaaagaat gtttcgcttt aaagccaaga
      241 tgaactaaca aacaaaacat agacaattag taataaacat taaagttgaa atactaagca
      301 caattatact acttactgat atagtttgga aaataaagat tcgcatgcta gtggtcaaag
      361 aggaggattt ggtgatagtg gaagcactga cgttggttac cgtagtgata gaggatatgg
      421 aggaagaggg cgcggaggtt ttggtggccc aaggccattc agacccgcgc cagtcaaagt
      481 aggagaagaa ttcgatgtaa aaatcgaatc tatgagcaaa agaggcgacg ccggtgtagc
      541 aaaggttgag ggtttggtga tctttgtagc aggtacaaaa gttggagata gtgttagaat
      601 aagaattaca aaggttggta gaggatatgc tactgctgaa attgcaagtc aatcggaaag
      661 cgcaagcact ggggcaacaa tagagcagaa taaattagat gaatcaacaa ccgatgagca
      721 ataaggttag atcaatgaat ataaaatgga actcaaatag ttaatttata ttattttatc
      781 aggactgcat gaataaataa tcccagtcat acagttttgt aatgagttca ccgcctactc
      841 atttaatgga attgccaagg gagatactga taggggatgg agtaatctcc aagcttggct
      901 cctttattac agatctagat gagagtgcct caaagattgc aattataaca ggtaataagg
      961 taaaaacaag agcaggtgca gcctgcaagt catcgctttt tgaatattct ttacaggatt
     1021 catggtacat tgcagatgat gcgtccatga attcagtaaa taagctacaa accaggatta
     1081 ggaactctat tccagatttt attattggcc ttggtggggg gcgctctgtt gatgtagcca
     1141 aaatgactgc atttaagtta aataaaccat tagtaagtgt acctacttct gcctctcacg
     1201 atggaatatc tagtccattt gtttcaataa gaggcatcga taagccacat tcagtcaaag
     1261 taaatacccc aataggagta ttagctgata ctcacttgct ttctcaggcg ccgttgagat
     1321 tgttggctag cggctgtggg gacctagttg ctaaattaac tgcagttaaa gattgggaac
     1381 ttgcgaggga cgaaactaac gaatacttcg gaagttatgc tgctaatctt gcatatatga
     1441 gtgcaaaaat cattttggat gattcgcaaa aattacttca aaaaaacgga tttggaatta
     1501 gaacagtcgt tgaggcatta atcagtgcag gggttgcagc ctgtattgca ggaagtagca
     1561 gaccgtgttc tggggcagaa catctcttta gtcatgcact agaatatatt gcaggtcaga
     1621 attgtggact gcatggcgaa cgtgtcggtc tgggtactat tatgatggcc aaactgcatg
     1681 gtcttaattg ggagagaata gttaaaacgt tggaaaatgt gggtgctccg acaaatgcag
     1741 agcaaatcaa attaaatgaa gatcaaatag tcaaatcgtt actaactgct caatccctta
     1801 gacctgatag atatacaatt cttagtaaat taaaactaga taaacaatcc gcattggaac
     1861 tagctaaatc tgtatacgtt ctttaagaag cattgaagaa tagtaaggta aaaattcttt
     1921 atacaagatt tttacgttaa ttcgctattc gtgttaggtt tattattcaa aggttaattg
     1981 aaagcaattt ttgggtttga tcgtaatgag tagaacaaaa agcaactcct ctttatgtag
     2041 ctcgaatata taattacggt taagaacggg tgttttgata attgaactgg taacaattca
     2101 acttgaacct aagtggtttg ccaagttttc atagtagtca tagtcagaat tacattatat
     2161 gatgatatat agatggccat ggtttttgga gatgcaattg gatcgtatac tagacaatac
     2221 atgtatcact agctgcaata aaaacttcaa ggttgtggac attattagag gagatacttc
     2281 agtgatgatc gactcaagaa aaagaaaaat ttttaattat gcagacttat tttcaatagt
     2341 agagtttact ggtttttctt cagattttga ttgttgttgt gattgtagtg gtggtgttga
     2401 ttgcttgtaa ctttcaatga atttaacatt attcaggagc ggtacaaatt tgaagatatc
     2461 atttgctatt gcgcgcttga taacttgcag tccttcagat agaaaagttt cttctgacat
     2521 ttcaatttct aaagttgatt cttcaagttt gaattttatt ttttct
//
LOCUS       DASQSJ010000179         3820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_21999, whole genome shotgun sequence.
ACCESSION   DASQSJ010000179 DASQSJ010000000
VERSION     DASQSJ010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21999"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VE223_03520"
     CDS             complement(<1..413)
                     /locus_tag="VE223_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20692.1"
                     /translation="MRIQRTANIILRQRVVTAAAVMQVIAFTIFSFSSSGQQKQMINT
                     EATTGGVGGQVNVLYAGSLLSVMETKIGPAFSNLGYDYRGEGHGSIQNANMIIDGQRF
                     PDVFISVGANPVNMLINNKPSLAKWYLGFASDEMV"
     gene            844..1020
                     /locus_tag="VE223_03525"
     CDS             844..1020
                     /locus_tag="VE223_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20693.1"
                     /translation="MSKYCFYHAQAFDNLTEHYKRWVEAYGTISWRDFLNKLLQMNET
                     GIWVKDVIVVELKG"
     gene            complement(1070..2740)
                     /gene="thsB"
                     /locus_tag="VE223_03530"
     CDS             complement(1070..2740)
                     /gene="thsB"
                     /locus_tag="VE223_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HZC20694.1"
                     /translation="MSIQQGSAGGVPVLILKEGASQTKGRDAQKNNITAAKLIAEIVK
                     SSLGPRGMDKMLVDTLGDVTITNDGATILKEIDVQHPAAKMMVEISKATDNEVGDGTS
                     SVVILAGALIEKAEELIAKDVHPTIIVDGYRKSATKALEVLNNIAQKINSSEKEQLTK
                     IAKTSMQTKLVSKESDDLAQIVVNAILQVTEKNESGNKVDIDDIKVDKKAGGSLHDTK
                     LIKGIVLDKEVVHGGMPKRVEKAKIALINSALEIEKTEFDAKININSPEQMNMFLEEE
                     NKMLKSMVDKIITAGANVVVCQKGIDDIAQHYLAKANILTVRRVKESDMTKLARATAA
                     RVINNLEDLTSKDLGSADLVEERKVETDKWVFIEGAKHPKSVTILIRGGSQRVVDEAE
                     RSIHDALMVTKDVIEKPAIVAGGGAPEAHVAGKLSEWASTLSGREQLAAQKFAEALEV
                     IPLTLAENAGMDPIDSMTELRAKQSKGTKWTGVDARNNRIADMSKIEIVEPLSVKEQI
                     IKSATEVASMLLRIDDVIASGKSAGGPPGGMPPGGMGGMGGMGGMGDM"
     gene            3279..>3820
                     /locus_tag="VE223_03535"
     CDS             3279..>3820
                     /locus_tag="VE223_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/PEP mutase family protein"
                     /protein_id="HZC20695.1"
                     /translation="MVIQNTKRKISLRTQIEDKKKIIVLPGVFDALSAKIAQLVGFDA
                     IFQTGYGSAAALLGMPDFGFLNEGETRGNAHRIIRAVNIPVIVDVDTGYGNPLNVWHL
                     VHELQSLGAAGIFLEDQIWPKRCGHMIGKDVISKDDYILKLKAALEARKSKDFIIVAR
                     TDARAPLGLDEAIERGKAYQ"
BASE COUNT         1114 a          761 c          694 g         1251 t
ORIGIN      
        1 ataaccattt catcagaagc aaaaccaaga taccattttg ctaaagaagg tttattgtta
       61 ataagcatgt ttactggatt tgcacccaca cttatgaaaa cgtctggaaa tctttgtcca
      121 tctattatca tattagcatt ctgaattgaa ccgtgtcctt cacctctgta gtcatatccc
      181 aaattgctaa aagcaggacc tatcttagtc tccatgaccg acagtagcga accagcatac
      241 agaacgttta cctgtccccc cactcctcct gttgttgctt cagtattgat catttgtttt
      301 tgctgtccag aagatgaaaa ggagaagatt gtaaaggcta taacttgcat tacagcagcg
      361 gcagtcacaa ccctttgacg taaaatgata ttcgctgttc tctgaattct caagatacaa
      421 cttatgatag aagaatcaac actgatattt aatggtgatt acttttatcc ctaaaatctg
      481 gcaaacctat actttatatg actaaattct cctcgcccct aatgtaaaat acctccgaca
      541 aaggattggt ggctaaataa taaagaagaa cgaggaaaag aaagaaaaga agtcatcatc
      601 gtattctaat atgtcccaat ggcagcatct gctgctgtta aatagaatcg gatagagaat
      661 gtcgttacaa ctacccgatg atgggcagca gagaaaaatt agtatgggat attaatcttc
      721 agatgaagga tatcagtatg gtgattgttt ggtcatctct acagttatcg aaaaattttt
      781 ctttgttata ctttgacaaa ttttatggag aaaaaatgct ttgcttgtgc acggaaagtc
      841 tctatgagta aatactgttt ctaccatgcc caagcttttg ataatcttac agaacattac
      901 aagagatggg ttgaagcata tgggaccatt tcgtggaggg atttcttgaa caaattgtta
      961 cagatgaatg aaacaggaat ttgggttaaa gatgtaatag ttgtggaatt aaaagggtaa
     1021 gaaagagaga ggaatatgga gaaacaaatg gaggtcagtt ccctagatct cacatatcgc
     1081 ccattccgcc cattccgccc attccaccca ttccacccgg tggcatgcct cctggtggac
     1141 caccagctga ttttccagat gctattacat catcaattct aagaagcatt gatgcgacct
     1201 ctgttgctga tttgataatc tgttctttta cagagagtgg ctctacaatt tctatttttg
     1261 acatatctgc aattctgtta tttcttgcat caactccagt ccatttggta cccttgctct
     1321 gctttgcgcg taactctgtc atgctatcaa ttggatccat gcctgcattt tctgccaatg
     1381 taagtggaat tacttctaaa gcttcagcaa atttttgtgc agcaagctgt tccctgcctg
     1441 aaagtgtact tgcccattca cttaatttac ctgccacatg tgcttcagga gcaccaccac
     1501 cagcaacaat cgcgggtttt tcaatgacat cttttgtaac catcaacgca tcatgaatag
     1561 aacgttcggc ttcatccaca accctttgtg agccacctct gatcagtatt gttactgatt
     1621 ttgggtgttt ggctccttca atgaataccc atttgtctgt ctctaccttg cgttcttcaa
     1681 ctagatcggc agaaccaaga tctttacttg taaggtcttc aagattattt atcactcgtg
     1741 cggctgttgc tcttgctaac ttggtcatgt cgctttcctt tactctgcga actgtcaaaa
     1801 tgttagcctt tgccagataa tgttgtgcaa tgtcatcgat gcccttttga cagacaacta
     1861 cattggcacc tgcggtgata atcttatcga ccatactctt tagcatcttg ttctcctctt
     1921 ctaggaacat gttcatttgt tctggagagt taatatttat cttggcatca aactctgtct
     1981 tttcgatctc aagtgcagaa tttattagtg cgatctttgc tttttctact ctttttggca
     2041 ttccaccatg aacaacttcc ttgtcaagta caatcccctt gatcaatttg gtgtcatgca
     2101 gtgaaccacc tgccttctta tccactttga tatcatcgat atccacttta ttaccagatt
     2161 catttttttc tgttacctgt aatattgcat taactacaat ttgcgctaga tcatcagatt
     2221 cttttgagac aagttttgtt tgcatagatg tctttgcaat cttagtcaat tgttcttttt
     2281 cacttgagtt aattttctga gcaatgttgt taagaacttc aagagctttg gtggcactct
     2341 tcctataacc atcaactatg attgtcggat ggacatcctt tgcaattagt tcttctgctt
     2401 tttcaatcag agcacctgcc aatattacta cagatgatgt gccatcacct acttcattat
     2461 ctgttgcctt actaatctct accatcatct tggctgccgg atgttgaacg tcaatttctt
     2521 tcaaaattgt tgcgccatca ttcgtaatcg taacatcacc aagggtatct accaacatct
     2581 tgtccattcc tctaggacca agagagcttt ttactatttc agctatcagt tttgcagcgg
     2641 taatattatt tttctgggca tcgcgacctt ttgtctgact agcaccttct ttcaatatta
     2701 atactggcac tccgccagct gagccttgtt gaattgacat ctttcattca ttcacctaaa
     2761 atttataaaa taagtggaat attttgggat attttaaact tactacgaag tatgaatata
     2821 taccctgaat atatatcccg tatctgctac taacatttca ctataattct ttttgatgta
     2881 tataatcgca tgtgttagaa gtaatatact actataaact aggccttcat gatcagttaa
     2941 tttaactatt atggtagcaa gaaagatgca atttttcatg tcaatttcga ttttcagata
     3001 tagatgaata ttttaagcaa gttctaacaa cacagtgtgt cacgatcttt gtacactgaa
     3061 aattaacatc aagcattatg gcacgtcttt aatttgccaa atgatctatc cgcgctttta
     3121 caatcatatt gtaccattga acgcatactc tgggacagga aagttgaagg ttcattgata
     3181 gaattcaaaa attataatga gatatattaa taatgtataa taaattgaag ccaagatctg
     3241 gcaagcattt aatatttcat tagtttggag cactagtagt ggtaatacaa aatacaaaac
     3301 gcaagatttc gttaaggaca caaattgaag ataaaaaaaa gatcatcgtg ttaccggggg
     3361 tatttgatgc attaagcgcc aaaatagcac aactggtagg attcgatgca atatttcaaa
     3421 caggttatgg ttctgccgcg gcattattgg ggatgcctga ttttggattt ctaaatgaag
     3481 gggaaactag aggtaatgct cacagaatca tacgtgcggt aaacattcca gtaatcgttg
     3541 acgtggatac tggttatggc aatccattga atgtatggca tcttgttcat gagttgcaaa
     3601 gtctgggtgc agctggaatt tttcttgagg atcaaatatg gccaaaaaga tgtggtcata
     3661 tgataggaaa ggatgttata tcaaaggacg attatatttt gaaactaaaa gcagcattag
     3721 aagcccgtaa gagtaaggac tttatcattg tagctagaac agacgcacgg gcaccacttg
     3781 gattggatga ggccatcgaa cgtggaaaag cgtaccaaaa
//
LOCUS       DASQSJ010000180         2464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_140408, whole genome shotgun sequence.
ACCESSION   DASQSJ010000180 DASQSJ010000000
VERSION     DASQSJ010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_140408"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..419
                     /locus_tag="VE223_03540"
     CDS             <1..419
                     /locus_tag="VE223_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20696.1"
                     /translation="TVISTIGFFVVLIFHSTGDMVSVGLTILAAGLSLSISGAFNVIL
                     LSVPMQTTGIALGMTLLLDLVGMSVGPALSGVLQEAYKGTALKVQGLFPTNQAYNLIF
                     ITAALVSLASVILAFYVSRTRLGTSTITSEQHEQRI"
     gene            complement(553..975)
                     /locus_tag="VE223_03545"
     CDS             complement(553..975)
                     /locus_tag="VE223_03545"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZC20697.1"
                     /translation="MPTIVHFEIPADDVERAKKFYTDLFGWKIEKMPNTSTDNNSKLT
                     SAATGQPIEYWIITTTDDKGNKASIGGGMMKRQMPEHHITNYISVNSIAEYTSKVEEL
                     GGKVFASKHTVPGMGYFALCSDTENNVFAIWESYESAK"
     gene            complement(1015..1431)
                     /locus_tag="VE223_03550"
     CDS             complement(1015..1431)
                     /locus_tag="VE223_03550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20698.1"
                     /translation="MNRSNEMETKQQIGNQVQLFLWQPPKKNHDAMVRFPKQVNDHFR
                     EQGMQPQELFQLNDNSNCKTSVDMVFTDIYNAVSANQYEDEIWPELYSYKDQNHQEKV
                     GATMQTDKSGGQLLRQFMDLIRPGSCIEGQFGLVRV"
     gene            complement(1780..2232)
                     /locus_tag="VE223_03555"
     CDS             complement(1780..2232)
                     /locus_tag="VE223_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HZC20699.1"
                     /translation="MHIFRYSYIVKSPIERVWYFYTDVKHLKIITPKQIDLNITNATS
                     PNIVQGQEIWCNGKIIAKRRTTWHSKITFLKPYEYVDEMLDGPFKKWRHVHKFRNVDE
                     KQTEVIDEIEFELPYGVLGKLFEGYAYKQLQHTFEYRKIATIKALENI"
BASE COUNT          703 a          466 c          443 g          852 t
ORIGIN      
        1 gcactgtaat tagtacaatt ggattctttg ttgtgttaat ttttcattcc accggagaca
       61 tggtatcagt tggacttacg atactcgcag caggtctatc tctttcaatt tctggcgcat
      121 ttaatgtaat actactttca gtaccaatgc agacgacagg gatcgcacta ggaatgacgt
      181 tgcttctcga cctagttgga atgtccgtag ggccagctct ctcaggagtg cttcaggagg
      241 catataaagg gacagcatta aaagttcaag gccttttccc gacaaaccaa gcctacaacc
      301 tcatatttat aaccgcagcg ctagtatcat tagcatctgt tattctggca ttttatgtat
      361 ctaggacaag acttggaaca tcaacaataa ctagtgaaca gcacgaacag agaatataga
      421 tgatcaagtc atctatatgg agcactagga agatcagtat aagcaaacta aaatgattga
      481 taggaggtcg acactattta ttttgatttt atttattttc atttgtattg agatgtgagg
      541 ctttgggggt agttactttg cactttcata agactcccat atagcgaaaa cgttgttttc
      601 tgtatcactg caaagcgcga agtagcccat tcctggcacg gtatgtttag aagcaaacac
      661 tttacctcct agctcctcaa ctttagatgt gtattcagct atcgaattta cactgatata
      721 attagttata tgatgctctg gcatttgtct tttcatcatt ccaccgccta tggatgcttt
      781 gtttccttta tcatctgtag ttgttatgat ccagtattct attggttgac ctgttgctgc
      841 agacgttagc ttgctattat tatccgtact agtattaggc attttttcta ttttccatcc
      901 aaatagatcg gtatagaact tctttgctct ttcaacatca tctgcaggga tttcaaaatg
      961 aactattgtt ggcatgttct aattactcac ttgttgctat tcctcataca atatttatac
     1021 tctcacaaga ccaaactgcc cctctatgca tgagcccggt ctaataagat ccataaactg
     1081 tcttaaaagt tgacctccgc ttttatcagt ttgcatcgtt gcaccgactt tctcttggtg
     1141 attttgatct ttgtatgaat atagttccgg ccaaatctcg tcctcgtatt ggttggctga
     1201 aacagcgttg tatatatcgg taaagaccat atccactgag gtcttgcagt tactattatc
     1261 gttgagttgg aaaagctcct ggggctgcat gccttgctct ctaaaatggt cattaacctg
     1321 ctttggaaat cgcaccatag catcatgatt ctttttgggc ggttgccaca aaaagagttg
     1381 gacctgattt ccaatctgtt gctttgtttc catctcgttt gatctattca tagggagcag
     1441 tattcaaaat tagttaataa acatgtaagg gatcaaaagt atacttacat ggaatgcatc
     1501 acagacaaat acaattcttt gcatcactaa ataatatgaa ttgagattta aagcattact
     1561 gtagaagaat agcttaaaag aatacatcat cgagacgcat tcgatctttt gataacttta
     1621 tgtcgcattg tcacatatta taacggtcct gaaattcaaa gtgatggtgc aacactatca
     1681 gcttcaaatg gcagtatctg tggcgaagta ttctatcttg cattagccga atagcgtttt
     1741 gtgtgagaat acctgatcca tgggtctgga aagtgtaact tagatattct ctaaggcttt
     1801 aattgtagct atttttctat attcaaaggt atgctgtaat tgtttgtatg cataaccttc
     1861 aaataacttt cctaatacgc catatggtaa ttcaaattca atttcatcta ttacctctgt
     1921 ttgtttttca tctacgttac gaaacttgtg cacgtgtctc catttcttga atgggccatc
     1981 tagcatctca tctacatatt catatggttt gagaaatgta attttagagt gccaggtagt
     2041 tcttcttttt gcaattattt taccattaca ccatatctcc tgtccttgaa caatgttggg
     2101 acttgtagca ttagtgatgt taagatctat ctgcttaggt gttattattt tcaaatgctt
     2161 tacatccgta taaaaatacc aaaccctttc tatagggctt ttaacaatat atgaatatct
     2221 gaatatatgc aaatactcac ttatcttttg aataagcact atatagtgct atcatgcatg
     2281 gcttactagt tctcttgatt atatagttgg gtgaatacaa tttatgggaa attgttttca
     2341 agaagggaat aacaaaagaa cacgaatcaa gtggatcctg cttttcaaag tttcctaaac
     2401 acagaatagt tggagcaaat cttgaaacct gtttgagagt aataacgatt agtctaatca
     2461 attc
//
LOCUS       DASQSJ010000181         3940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_368380, whole genome shotgun sequence.
ACCESSION   DASQSJ010000181 DASQSJ010000000
VERSION     DASQSJ010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368380"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            258..599
                     /locus_tag="VE223_03560"
     CDS             258..599
                     /locus_tag="VE223_03560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20700.1"
                     /translation="MMRDGNEHNFLIESLKELEVIYTMVKLLAECSKCGSPVTDSLET
                     EIEQHGKVKTGSYANGRWMCHSCIENEEGKNKNGKLVDESSSAHIDKCETIGVANESD
                     VSPNTPRADGT"
     gene            complement(1042..1515)
                     /locus_tag="VE223_03565"
     CDS             complement(1042..1515)
                     /locus_tag="VE223_03565"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HZC20701.1"
                     /translation="MKLIQAIPGMPNTVTETEVNNFLENRLNMQIATIDEEGYPMIQP
                     TWFLYDNKESKIYTATQKMAKKVQNIRRNPDKIYFSIDDENHPYKGVKGRAVATISED
                     IQKNLPIVKKINIKYLGTLEHPLAKMIIENTKNGTEVVIEITPRFFSAWDFGKAM"
     gene            1872..2348
                     /locus_tag="VE223_03570"
     CDS             1872..2348
                     /locus_tag="VE223_03570"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20702.1"
                     /translation="MPFSSNQYNNNNIHTHLPDSHYILIVDDEPDILSVVRRILEEYG
                     FKMCCFTKPYAALEHYKMLPNNHDLVISDLQMPNINGLEFIRKVKEINSNVKAILMTS
                     SFQTSDLGLLLLPNSNPSSSSSFLNLKIDEFIPKPFSIQKLVELIRKHISLKGKQE"
     gene            2977..3561
                     /locus_tag="VE223_03575"
     CDS             2977..3561
                     /locus_tag="VE223_03575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20703.1"
                     /translation="MNHTTKTNTTVLLAIIIIALTTLVTGSILYPIVGKKQQAYASSL
                     TSSFKDNTNKDLLVRQQHLNQENVCYRGQICKNSNVAPQTLGNDNSVTGFADQSNTNN
                     TPAVPSTMSLVGPQGPKGDKGDTGPPGPQGERGPQGVQGSAGPPRTLAVTERQGNPAT
                     IPPGQLGVSIASCNPGEIVIGGRVNVDLGVGGWR"
     gene            3530..3694
                     /locus_tag="VE223_03580"
     CDS             3530..3694
                     /locus_tag="VE223_03580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20704.1"
                     /translation="MLILVLAVGGNAYPYVVSGGSNAAANWWSIDEFNPSTAGSTTIT
                     ATAECASLVP"
BASE COUNT         1306 a          715 c          714 g         1205 t
ORIGIN      
        1 gaagaatatt tgaactatcg acaaaaaatt ttagtggctg tgaccgcagc cgcaaccgcc
       61 catactatta ctattttcat gctcacgatg agtatgactt tgttctgaac atgagggaca
      121 tgtattaata ccagattcag acataaacat cgtaccacaa gacgtacatt ttattttttg
      181 aactccttgc atatggttgc aattatatag atatcctaat taaagctttg caattatttg
      241 aaataaataa cgtgtgattg atgagggatg gaaatgaaca taattttcta attgaatctt
      301 taaaagaact agaggttatc tatactatgg tcaaattatt agcagaatgt tccaaatgtg
      361 gttcacctgt tactgattca ttggaaactg aaattgaaca acacggaaaa gtaaagacag
      421 gcagttatgc caatggaaga tggatgtgtc atagctgcat agaaaacgaa gagggaaaaa
      481 ataagaatgg caaactagta gatgagtcct cttctgctca tattgataaa tgcgaaacca
      541 taggagttgc aaatgagtct gatgtgtcac caaatactcc tagagcagat ggaacgtgat
      601 ataataatat aggtacacta tggtgccgcg ggttttgcag atctaatact gcaatcgtca
      661 actatcgaac agctatcgaa aaaggcatac atttacacta tttgattgat ggggcacagc
      721 attttattac tcttgtatta taattactat cccaaggacc acccatttgc tttccaggta
      781 ctgatacttg gcatctagaa actgtgaaat caatgccgac aaacacttta tgcaaataca
      841 tgattgtagt gggaaaaaga agaaaagaga tgaatttaac cagtagtgat agcagcaaaa
      901 aagataatag agaagttgtg gaatgtgaag agaattcaag tatttgcact tgatccttga
      961 taacagtaga tgacaaacga attattcttc ttctgcgttc acgaagtctt gtgtcgaatt
     1021 gtcgctttca attttggact actacatagc cttgccaaaa tcccatgctg agaagaatct
     1081 tggtgtaatt tcaattacaa cctcagtccc atttttggta ttctctatta tcatcttggc
     1141 aagaggatgt tcaagagtac ctaggtactt tatgtttatc ttttttacta ttggcaaatt
     1201 cttctgtata tcttcagata ttgttgctac tgctcttcct ttaactcctt tatatggatg
     1261 attctcatca tcaatagaaa agtaaatctt gtcaggattt cttcgaatat tctgaacctt
     1321 ctttgccatt ttttgtgttg ccgtatatat cttagattct ttgttatcat agagaaacca
     1381 ggttggctgg atcataggat atccttcttc gtcaatggta gctatctgca tgttgagtct
     1441 gttttcaaga aagttgttaa cttctgtctc tgtgactgta ttaggcatac ctggaatagc
     1501 ctgtatgagt ttcaatgtac gtcaaatatc atcttttgat ataaacatta aggccataaa
     1561 ttggtccgta atgtattatc taagttcgct tatattgtta ttgttattgt gataatgaca
     1621 tagagaaact gagaacaaag taagaaacac atttggtatt tgatatttcc atatttgaag
     1681 aaaaaaacta agtaacgaaa acagccgaac ccacagcaca tctgtctaat atattggacc
     1741 atacagtaaa gatatttcaa ccaaaggcca taagttgatt agatattcat taatcacata
     1801 gcgattgcta gtataatctt aatataatca tatgtacagt tagaagatca caaggacgat
     1861 gcaatacata tatgccattt tcttcaaacc agtacaacaa caataatatt cacactcacc
     1921 ttccagattc acactatata ttaatagttg atgatgaacc cgacatactc tcagtagtta
     1981 gacgtatcct tgaagaatac ggcttcaaaa tgtgttgctt tacaaagcca tacgccgcat
     2041 tagaacatta taagatgtta ccaaacaacc acgatctggt tatttcggat ttgcaaatgc
     2101 caaatattaa tggtcttgaa tttataagaa aagtaaaaga gataaactcc aatgtgaaag
     2161 caatattgat gacctctagc tttcaaacga gtgatttagg attactatta ttgccaaata
     2221 gcaatccctc gtcatcatct tcctttctaa atctaaagat agatgaattc ataccaaagc
     2281 cgttttccat tcaaaaattg gttgaactaa tcaggaaaca tattagtctc aagggaaagc
     2341 aagaatgaat ttgagtggtc ttgaatgctg cttgatgttg ctactgcttg caagtatgat
     2401 ttgttatctt cttaattact atatgcagca agatctacac tatagctttt actgctacca
     2461 ttgctaccaa gttgtctccc tgtttccaaa tgctaccatt ctatacttta cttaactatt
     2521 acaagcgata aaaagagatt gtaatggtta atgagtttat gtcataaaat ctaaaagggt
     2581 acctttcctt cggatcttta atgctactat catgtaagta tggtttgtca taacctcctc
     2641 ttattctcat actccttata tcatgtggct tctggcaagc ctaccatctt tctgaatgta
     2701 ttggcagttt ccggaccaaa accagcatag tgattattaa cagactgcac cgaccttaac
     2761 gtaccaacta tataaaatag atataataac gactaatagt tataagacgt ccatacagtg
     2821 gttgatacat atctttttta tcaaagattc aataagtagg ttctttgtta ctaactaaag
     2881 taatacttag ttgattgttt taacctgaag gaagataaag taatattgag catattacaa
     2941 atataatcat aaaaggtact gtaagatagt acgtatatga accacacaac aaagacaaac
     3001 acaacagtac tattagcaat aatcataata gcattaacaa cactggttac agggagcatc
     3061 ttgtatccca tagtaggaaa aaagcaacag gcatatgctt caagtctcac atcttccttc
     3121 aaagataata ctaacaaaga tttacttgta cggcagcaac atttgaatca agaaaacgtc
     3181 tgttatagag gccaaatctg taaaaactca aatgtagctc cacagactct aggaaatgat
     3241 aattcggtaa ctgggtttgc tgaccaaagt aatactaata acactccggc ggtgccatct
     3301 acaatgtccc tggttgggcc tcagggacct aaaggagaca aaggtgatac aggaccacca
     3361 ggaccacagg gagagagagg acctcaagga gtacaaggat cagcaggacc cccacgaaca
     3421 cttgcagtca ctgaaaggca aggaaatccg gcaaccatac cgcctggtca acttggagtc
     3481 tctattgcaa gttgtaatcc cggtgaaata gttataggtg gacgggtcaa tgttgatctt
     3541 ggtgttggcg gttggcggta atgcttatcc ctatgttgtt tctggtggca gcaacgcagc
     3601 tgctaactgg tggagtattg atgagtttaa cccaagtact gctggtagta ctaccataac
     3661 agcaactgca gaatgtgcaa gtttggttcc atagtaatcc aaggcttttg ctgtgaacct
     3721 aaaactttac aggattcttg ttgaaccaat ttttaactgt gaaaacgtag gcactctcta
     3781 aaaggaagaa tcactctcta catagtcgaa aactgacgca taatagctta gccagctaga
     3841 attattgtcc atatctgaag aacagaacgg tccttgtatt tccaatttaa gacgtctttc
     3901 tacagatgcg gcgttatgct taattcaaga atacaacgag
//
LOCUS       DASQSJ010000182         3046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_499749, whole genome shotgun sequence.
ACCESSION   DASQSJ010000182 DASQSJ010000000
VERSION     DASQSJ010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499749"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            226..1308
                     /locus_tag="VE223_03585"
     CDS             226..1308
                     /locus_tag="VE223_03585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20705.1"
                     /translation="MKSVVSKKLQLSNIKVNKITFEEACIAFEVTDVVEAAAIIVRMF
                     GIDKVAVAKCVSNRFTDVVTTVVKTGKQIMLPGEKFFIRVEKSSKAKISYIGKDIEIA
                     SSGDLVAELSTIAAKPAKNEYEASKIILSYIGKHSAYVCVQTGTALGGMLPGSQKDKV
                     MCGIHNLLSCLSCMMAIKCGFIPDFLIMYTNEDDLKENSKLFGRIMSKMSIRKYEIRL
                     VHIDLPVKCNDNLKLMLQEGVYARILTLLPGKRGLVMPLNAAIHPLWFVESTMRKIVS
                     TGKMLWMPLMLLTDSMCYDAKNVGLEDKITSINNLVTKKMMFKKNEYERYERTIDMLS
                     KAAVKNMKTISLKVGPNYLHDIIDSI"
     gene            complement(1261..2433)
                     /locus_tag="VE223_03590"
     CDS             complement(1261..2433)
                     /locus_tag="VE223_03590"
                     /inference="COORDINATES: protein motif:HMM:NF024918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide disphospho-sugar-binding
                     domain-containing protein"
                     /protein_id="HZC20706.1"
                     /translation="MAKAYLTPYGVGLGHASRLVMVADRLQKMGMVIRFSSFGEAATY
                     ISMQGYKCIAVPPVEFAWNMEGEFSIKYSIANTLRWFTNFSRQINKETRSMAEYKPDI
                     IVSDSRLSSLITAKFFGIPSVVILNQVKLLLSPRLREFRIARLFEKMTGEILGVMWTT
                     ADKILVPDLPPPYTIASHNIWDTSSVIAKLEYVGFTAPKIDVSEERINKVANSLGLNR
                     SRPVVFVHISGPIETRKPIIRIILEACKSLRPEIQYIISEGRPKGNLEPKKLSGSGWY
                     YEWCPVRNEIFAMSNLLVLRGGHVALSQAIQFGKPIITIPIENHGEQLGNSEKIVKIG
                     AGLMLKPKELKANHITDAVHQILDNPTYQKNSTELMRLTEKLDGINNIVKIIRSYL"
     gene            complement(2621..>3046)
                     /locus_tag="VE223_03595"
     CDS             complement(2621..>3046)
                     /locus_tag="VE223_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00296 family protein"
                     /protein_id="HZC20707.1"
                     /translation="CIGFPIPEKKLYQSVIEAAINAATQDPRFSSVGRDELANIIFEV
                     SILSSPEKIKVQNTIDYKNHIKIGRDGLILKWKYGSGLLLPQVAMELNWDIDEYLTNI
                     CYKANAPPDTWLMPESQLYKFEAMVYKEAEPNGKIFKVI"
BASE COUNT          958 a          517 c          557 g         1014 t
ORIGIN      
        1 ggatagaaat atggatattt ccttggacac aatcagatat attctaggtt tcaaccattc
       61 tatgaattat atcgtttata ttatcagtat tgttatccag tcgaatcctt aatgattact
      121 ttatgaataa cgccaactat aattaataga aatttggata agtatcattt gaagaacgta
      181 ttactagtct tcccatcgtc tctccaggta aaccggaaaa ccaaaatgaa atctgttgtt
      241 agtaaaaagc ttcaattaag caacatcaaa gtcaataaaa tcacatttga agaagcatgt
      301 attgcatttg aagtcacaga tgttgtagaa gcagcagcaa ttatagtacg aatgtttggt
      361 atagataaag ttgccgtcgc aaaatgcgtc tcaaatagat ttactgatgt tgtaactaca
      421 gttgttaaga ctggtaagca gataatgtta ccaggggaga aattttttat tagagtcgag
      481 aaaagtagca aggcgaaaat aagttatatt ggaaaagaca tagagattgc ttcgtcaggt
      541 gatctagtag cagagctatc tactatagca gcaaagccag caaaaaatga gtatgaagct
      601 agcaaaataa ttttatcata tataggtaaa cattcagcat atgtgtgtgt tcagacaggt
      661 acagctcttg ggggcatgtt gcccggatct caaaaagaca aagtaatgtg tggcatacat
      721 aatctcctat cctgtctatc ttgtatgatg gctataaaat gtggatttat accagatttt
      781 ttgatcatgt atacgaatga agatgatttg aaagaaaatt caaagttgtt tggtcgtata
      841 atgtctaaaa tgagcattag gaaatatgaa attcggctcg tccatatcga tcttcctgtt
      901 aaatgtaatg ataatctgaa gctcatgcta caggaaggcg tttatgctag aatcttgacc
      961 cttttgcctg gtaagagggg attagttatg ccattaaatg cagcaattca tcctctatgg
     1021 ttcgtagaat ccaccatgag gaaaattgta tctacaggga aaatgctttg gatgccattg
     1081 atgttattaa ctgatagcat gtgttatgat gctaagaatg taggtttaga agataaaata
     1141 acgtcaatta ataacttggt tactaagaag atgatgttta aaaaaaacga atatgaacga
     1201 tatgaaagaa caattgatat gttatcaaaa gctgcagtta agaatatgaa aactatttca
     1261 ttaaaggtag gaccgaatta tcttcacgat attattgatt ccatctaatt tttcagtcaa
     1321 tcgcattagt tcagttgaat ttttttggta tgttggattg tcaagtattt gatgaactgc
     1381 atcagtgata tgatttgcct ttagttcttt tggctttaac ataagacctg caccaatctt
     1441 aacaatcttt tcagaattgc ctaattgttc gccatggttt tctataggta tcgtaataat
     1501 aggctttcca aattgaatag cctgtgataa agctacatgc cctccacgta atactagtaa
     1561 attgctcatc gcaaatattt cgtttcgtac gggacaccat tcgtagtacc agcctgagcc
     1621 tgaaagtttt ttaggttcaa gatttccttt cggtctgcct tcagaaatta tatactgaat
     1681 ttctggacgg agtgatttac atgcctcaag tataattctg atgattggct ttcgcgtttc
     1741 tattggaccg ctaatatgga caaatacgac tggtctagat ctatttaagc caaggctatt
     1801 tgccacttta ttgatccgtt cctcgctcac atctattttt ggcgcagtga aaccaacata
     1861 ttctaatttt gcaatcaccg aactagtgtc ccaaatgtta tgacttgcta ttgtatatgg
     1921 tggaggaaga tcgggcacta aaattttgtc tgctgttgtc cacatgacac caagaatttc
     1981 acctgtcatc ttttcaaaaa gtctagcgat cctaaactct cgaagtcgtg gagaaagtaa
     2041 tagctttact tgattcagga ttaccacaga cggtatccca aaaaatttag ctgtaataag
     2101 tgaagataac cttgaatccg aaactatgat atctggttta tattctgcca tgctacgggt
     2161 ctctttattg atctgccttg aaaaatttgt aaaccatctg agggtgtttg caatactgta
     2221 ttttattgag aattctcctt ccatattcca tgcaaattca acaggtggaa ctgctatgca
     2281 tttatatcct tgcatggaaa tataagttgc agcttctcca aatgaagaaa acctaattac
     2341 catacccatc ttttgaagcc tatctgctac catgactagt cgacttgcat gtccaagacc
     2401 gactccataa ggtgttaaat aggcttttgc caaattatga tgttgttgca ggtttgatta
     2461 tatattgcta aggtgtcatt aggtatcata taattaattt tattctgagt agatgcccaa
     2521 atctatccat gggagaagat atgcttttac tcatcaagca cttcaagaaa cagttacaat
     2581 caatatgtgt atctgtatac tatcataata actaagaatc tcagattact ttaaatattt
     2641 tcccattggg ttctgcttcc ttgtaaacca tcgcctcaaa tttatatagc tgtgattctg
     2701 gcataagcca tgtgtcaggt ggagcatttg ctttatagca aatgttagta agatattcat
     2761 ctatatccca atttaattcc atcgcaactt gagggagtag tagtcctgat ccatacttcc
     2821 attttaggat caagccatct ctgccaatct tgatatgatt tttatagtcg attgtgtttt
     2881 gtactttaat cttctctggt gatgaaagaa tgctgacttc aaaaattata tttgcaagtt
     2941 catctctacc tactgacgaa aatctaggat cctgtgtagc tgcatttata gcagcttcga
     3001 ttaccgattg atacaatttt ttttcaggaa taggaaaacc tatgca
//
LOCUS       DASQSJ010000183         5041 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_527770, whole genome shotgun sequence.
ACCESSION   DASQSJ010000183 DASQSJ010000000
VERSION     DASQSJ010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527770"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..681
                     /locus_tag="VE223_03600"
     CDS             310..681
                     /locus_tag="VE223_03600"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HZC20708.1"
                     /translation="MTREKITLPFEVAYSEKPSEKSKNMKRLAFIVKPENLDDIILSL
                     KEMGLEATIYDVKRAGKDKERVTSGRGSGTSDLGYTTRKIVATVVSSDHVNEIVDRIK
                     KTLEGDKAVVMISAVDDLVML"
     gene            complement(1385..2020)
                     /locus_tag="VE223_03605"
     CDS             complement(1385..2020)
                     /locus_tag="VE223_03605"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HZC20709.1"
                     /translation="MSTIRLSFFITITTVLLSLIGNIALSTFQQQKALAQSTVKSTDM
                     SSNANTTTANKFLVYTNPNQGIRIDYPANWKLDEHPYADKFVAYLTSTLKNSSDVSPA
                     TFTVSVETLKKNISLDNYTNANLAKAKQSLPRFQLVESNATTLAGIPAHKIVYTFLSP
                     DPAIQIPFTSMNIWTIKQGKAYNISYTQARSQFAKYLEVTEHMINSFTIIK"
     gene            complement(2192..3097)
                     /locus_tag="VE223_03610"
     CDS             complement(2192..3097)
                     /locus_tag="VE223_03610"
                     /inference="COORDINATES: protein motif:HMM:NF012612.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HZC20710.1"
                     /translation="MVFNGSIPGPVIAIDQGDTLQLTLKNEGKLVHSLDFHAGFGAAE
                     ANSGAVAPGQSKTWTLHGTYGGAFFYHCSADALNGIWEHIASGMYGGIIVHPTNEQPA
                     KEFYVVFGENYNNADQGLFKGTNGKTGSFDIAKFVNNEPDLILTNGMAHKYVPAIGQV
                     VKIVLNKNAEVFKVKPGELTRWFIVNAGPNQFLGFHIIGGIISVRDGSVVNRYGTQDL
                     NDETWTIPPGSASVIESTFPLPGLYVGLTHAIQNALKGGAFAILAANNSTANDQPLHT
                     CVPPKGSPTAAELPNGKCVAATGTA"
     gene            3087..3326
                     /locus_tag="VE223_03615"
     CDS             3087..3326
                     /locus_tag="VE223_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20711.1"
                     /translation="MKTIALYLIPPGCRALSGATCTTFSLAINRAFFVLPAEACACAL
                     ERDVPYIRGLKIIPATRTPTTRPAITAVFIVAIVI"
     gene            complement(3809..>5041)
                     /locus_tag="VE223_03620"
     CDS             complement(3809..>5041)
                     /locus_tag="VE223_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HZC20712.1"
                     /translation="KTIKAYNLTFKKIVVVIAILVVGTGAAFTISSINDQSSLTIDKL
                     LSLLFGNNLPRRDITLGNEAYHVGQLGTPIPFTTRDLTLPELFTKVEKSVVQISSRSD
                     SSIRSAARLGSGFVFDRNRHIITNYHVALGSKNIDVTFMDGDTYHASIVGSDPFTDLA
                     VLYVQDVPKDTLFPLALGNSGALEVGEQIAAIGNPFGLSGSMTAGIISGLGRLLPSTA
                     GLGSRFSIPSIIQIDAPINPGNSGGPLLDMRGEVVGINSAIFSSTGEFSGIGFAIPSN
                     TINKVVPFLITKGSYSHPWIGLSGTNMTPEIANAIGLKESRGFLVVDTVSGSPAEKGG
                     IHGGDREVTINGMQIALGGDVIEKIDDKVVRKIDDILAYIESMKSVGETVTLSVLRDG
                     KIQKVNLSLAARPDFQGP"
BASE COUNT         1540 a          984 c          950 g         1567 t
ORIGIN      
        1 gatgtaggtt gtgaaataga aaattcgtta atctcaaata acataatgca tggtttacca
       61 aaaccctcct gcaacggagt aattcctctg caactttgag tatttataaa aaggattaaa
      121 aacagatact tacgtaagta atcggtatga tggtcgagat aatgaatgca tcacctaatg
      181 tttgtttccc cacagaaaat acaaaatgct ttattggcaa agtcatattc ttttgatcgt
      241 ttttgttgct ccctgttttc tcattatgat aataatcctt ttctaggaca atttgattta
      301 taatattcta tgacacgaga aaaaataacg ttaccatttg aagttgccta ctcggaaaag
      361 ccaagcgaga agtcaaaaaa tatgaagaga ctcgcgttca ttgtcaagcc agaaaaccta
      421 gatgatatca tcttatcact taaagaaatg ggcctggaag cgacgatcta tgatgtaaaa
      481 agggcaggaa aagataagga aagagtaact tcaggtaggg gaagtggtac gtctgatctt
      541 ggatatacta caagaaaaat tgtggctacg gtagtgagct ctgatcacgt caatgagatt
      601 gtagatagaa taaaaaaaac tctcgaagga gataaggctg ttgtcatgat ttcagcagta
      661 gatgatcttg taatgctcta aaagatacca tctgcataac gcgggtggct agtacctaag
      721 accaagacta ccagtgtgga ggctattctt gattaggctt caacaaacta tatttaatac
      781 attggcaata ttgtctagct aatctgtgtc tacccataca ataatcgtaa ccacctagag
      841 aagaagataa gcaagtaata ttcgtacgat tttgtaacaa ctgtagtaag acaagattag
      901 agagcacata ccctaaggca gctaatcata aacaatggaa ttgcgtttta ttaataattc
      961 cagtacatag tcaaggagtt tggatagatg cgtcatcaga gtggacctga agtattatcg
     1021 cggctttact tgttattcag gcgtataagc tcaatgttca tgctgctaaa cccttcctac
     1081 aggctcgacc tcgtataata catcgcccca atcatccttg acaacaataa tctttactca
     1141 acaaaaacct aatgaaaata gcataaatgg gcgaccttaa gagcaattta ataatgatac
     1201 tttgaaaatg caaatgtcca atcgatgact aaagccgatc tagctggaat agtccatgtt
     1261 tagtcattca aatcctgggt accgtatcga ttaccgaacg aacaaacatg cgcatctatt
     1321 attcgacgaa taatgtggaa cgacattaaa ctcatttcaa cctgcgttga taatgttatc
     1381 gctcttattt tattattgta aatgaattta tcatatgttc tgtgacctct aaatatttgg
     1441 cgaattgtga tctagcttga gtatacgaaa tattgtaggc cttgccctgc tttatagtcc
     1501 atatgttcat tgatgtaaat ggaatttgta tagcaggatc tggacttaga aaagtataca
     1561 ctattttatg cgctgggatc cctgctaaag tagttgcatt tgattcaaca agctgaaaac
     1621 gtggtaatga ttgctttgct ttggctaaat ttgcattagt gtagttgtct aaagatatat
     1681 ttttcttcag agtttcgact gatacagtaa atgttgctgg agagacatca gaactatttt
     1741 ttaatgtaga ggtaagatag gctacgaatt tatcagcata aggatgctca tccaatttcc
     1801 aattcgcagg atagtctatc cttattcctt gattaggatt cgtatataca agaaacttat
     1861 ttgctgttgt tgtattggca ttggaagaca tatcagtact cttcactgta ctttgtgcca
     1921 gtgctttttg ttgttgaaaa gtggacaatg caatgttacc aattaatgat aacaatactg
     1981 ttgttattgt tataaagaaa gatagacgaa ttgtggacat tggtgtaaat aaagaattta
     2041 ctgtctatat ttagatattg tccatagatg agcattgaaa tatgctcaat taataaacat
     2101 caatacatat attgctttta acagctcaac taaataacga atagcgagaa ctcaaaagaa
     2161 aaaaggagta ggttttgatg tgtttctgta gctaagctgt acccgtagca gctacgcact
     2221 tgccattagg caattctgct gcagttggac tcccttttgg tggtacgcac gtatgcaatg
     2281 gctggtcgtt tgcagttgaa ttattagcag ctaatatcgc aaacgctcca cccttcaagg
     2341 cattctggat agcatgggtt agaccaacat atagacctgg tagcgggaat gtcgattcaa
     2401 ttaccgaagc tgatccaggg ggaatagtcc atgtttcgtc attcaaatct tgagtgccat
     2461 atctatttac cactgaacca tcgcgcacag aaattattcc cccaataatg tggaacccta
     2521 ggaactgatt gggacctgca ttgacaataa accatcttgt caattctccg ggtttgactt
     2581 tgaagacttc agcattcttg ttgagcacaa ttttgacaac ttgtccaatt gcaggcacat
     2641 acttgtgtgc cataccattg gtcaagatca aatcaggctc gttgtttacg aattttgcta
     2701 tatcaaatga accagttttt ccattagtac ctttgaataa tccttggtcc gcattgttat
     2761 aattttcacc aaaaaccacg tagaactctt ttgctggttg ctcatttgta ggatgtacta
     2821 taataccgcc atacatacca ctggcaatat gttcccatat accgttaagg gcgtcggcgc
     2881 tgcaatggta aaagaaagca cctccatagg taccgtgtag agtccatgtc ttagattgac
     2941 caggtgctac tgccccagaa ttcgcctcag cagcaccaaa acccgcatga aagtccagac
     3001 tatgcactaa tttaccctcg tttttcaatg tgagttgtaa agtatctccc tgatcgattg
     3061 caatgaccgg acctggaata gatccattga aaaccatcgc gttgtacttg ataccacccg
     3121 gatgcagagc attatccgga gctacctgta ctactttttc acttgcaatt aacagagctt
     3181 tttttgtttt gcctgcagag gcttgtgcct gcgccttaga aagggatgtt ccttacataa
     3241 gaggactaaa aataattcct gcaacaagga cgcctactac taggccagca ataacggccg
     3301 ttttcattgt tgcgatagtt atataagtat catataaatg attcttgata aagaataata
     3361 taaaacattg agtacttgag cattcgttaa taatgacgat ctatttagta tttagtgata
     3421 ttctagtatg agtgataatc tattttgtgt agttttagct tctttaatgt agcgaaatga
     3481 ttaaagcact tctcacattt ccatttattt tcttttgctt ggtcatattc tgtataggtt
     3541 cctgagccac tctgatacat ccctgtttta ttattatagc tgatacgact ctttgccatc
     3601 ttgtacttca gtctcaaatt ctccttcaaa gactacgaac aatgaataga taatagcata
     3661 aaaataaact agttaacaat ctattttttc tttggcaaac agttttcaca aaacatatct
     3721 atcagaataa gatgatggca atttttttgt tattttgtta gatatacata gatataggtt
     3781 acttgtgcgg ttaataaata aacacgaatc aaggcccctg gaaatctggt cttgcagcta
     3841 agcttaaatt gactttttga attttaccgt cccttaggac agatagagtc acggtctccc
     3901 caacggattt cattgattca atatacgcaa gaatatcatc aattttcctc acgaccttgt
     3961 catctatttt ctcaattaca tctccaccca gtgctatctg cattccatta atcgtaacct
     4021 ctctatcgcc tccatgtatc ccccctttct ctgcgggact tcctgaaact gtgtctacga
     4081 caaggaaccc tcgagattct tttagcccta tagcatttgc aatttctggt gtcatgttgg
     4141 tgcctgaaag gccaatccac ggatgactgt aggatccttt tgttatcaag aaaggtacaa
     4201 ctttgtttat ggtattggat ggaattgcaa acccaatacc tgagaactcg cctgtcgatg
     4261 aaaaaatagc tgaatttatt ccaactactt ctcctctcat atctagtaat ggcccgccag
     4321 aattgcccgg attaattggc gcgtctatct gtattatgct gggtatagag aaccgagaac
     4381 ccaagcctgc ggtggaggga aggagtcttc caaggccgct aataatccca gccgtcattg
     4441 aacctgataa accaaatgga ttgccgattg ctgctatttg ttcacccact tctaaggccc
     4501 ctgaattgcc caaggctaat gggaaaagcg tatcttttgg aacatcctgt acatataaca
     4561 ccgcaaggtc ggtaaaagga tcagagccaa ctatactagc atgatatgta tccccgtcca
     4621 taaatgtaac atcaatattt ttgcttccca aagcaacatg ataatttgta atgatatgcc
     4681 tattacgatc aaatacgaat ccagatccta atctagcagc agatcgaatg gaggaatcac
     4741 tcctgcttga tatttgaact acggatttct cgacctttgt gaataattcg gggagggtca
     4801 gatctcttgt cgtgaaaggt atgggcgtac ccaactgacc cacgtgatat gcctcgttac
     4861 ccaaagtaat atctcgtcta ggcaggttat tgccaaaaag taaagacaac aatttgtcta
     4921 ttgtcaacga actttggtca ttgatggagg aaatagtgaa tgctgctcct gttccaacaa
     4981 caagtattgc tatcacaact acaatctttt tgaacgtcaa attgtatgcc tttattgtct
     5041 t
//
LOCUS       DASQSJ010000184         7178 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_221197, whole genome shotgun sequence.
ACCESSION   DASQSJ010000184 DASQSJ010000000
VERSION     DASQSJ010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7178
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221197"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1080
                     /locus_tag="VE223_03625"
     CDS             <1..1080
                     /locus_tag="VE223_03625"
                     /inference="COORDINATES: protein motif:HMM:NF014878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20713.1"
                     /translation="VFRESRKYKGGIVITASHNPLEWNGLKFIINGRGLFENELDFML
                     RGKHVSKPNKFGKSFDIVSNYVDEVLDLISKQDKNNGVFGIDLGGGAACGYSNQLFEK
                     LGKKIYSINDIYGMSSRGPDPTIDDLMQLRNLVISNHLDLGFAFDLDGDRLVVVNEKG
                     EKLGADATLLICIASSINLGMKKFVASIDTSLSVEKYVVENGGKLYYSKVGEANVVNK
                     MIEVDADAGGEGSSAGFIMPKFNMCRDGLLSSAIISSDIKVIEKCLGFSSQYNQVRSK
                     IYIDSAIQPKLIDKLRDILAVESSHVLNIDGLKAIVDDDSWILLRPSNTENALRISVE
                     SKTSRVQSLYMETMKRVQKVYDQIK"
     gene            1064..2050
                     /gene="thiL"
                     /locus_tag="VE223_03630"
     CDS             1064..2050
                     /gene="thiL"
                     /locus_tag="VE223_03630"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HZC20714.1"
                     /translation="MTKLNETEIIDLFISKLRIKEERDDIATFALKEPKRRASNTHRL
                     LVLKCDMLVESTDVPIGMRPRHIARKSIVACISDLSAKGIRPPYICVVSIGIPTKYSK
                     SDIIDLVNGFKKASKEFGVKIIGGDTNKSNELIIDCNLVGVAADDIHIPKRNGAKPGD
                     FIICSGNFGYTASGLKILMNDSKAKGQFEKKAILSVIDPSPKQIFGIRLAKYFSASID
                     SSDGLAISLYELAKQSKVNFFIDHIPIASGIQEFAKKNDLDAKSLIFYGGEEYEIVAT
                     ISRSNLERAKSFAKKSKLKLHVIGRVQKGCGKVFTINNGKKYSLLESHGYLH"
     gene            2298..2705
                     /locus_tag="VE223_03635"
     CDS             2298..2705
                     /locus_tag="VE223_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HZC20715.1"
                     /translation="MSESNDVTQYRWGVAHIFSSYNNTLVHVTDISGAETISFSSGGR
                     HVTADRYESSPYAAMKSAVSAADAAKTKGINALHIRVRAVGGVGSRIPGPGAQAAIRA
                     LARAGFRIGRIDDVTPVPHDTTRKPGGRRGRRV"
     gene            2845..3732
                     /gene="cyoE"
                     /locus_tag="VE223_03640"
     CDS             2845..3732
                     /gene="cyoE"
                     /locus_tag="VE223_03640"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HZC20716.1"
                     /translation="MRVQDYVEVSKPRIVVVLIITAVTSLLAGSRFDSTPGDAWDVTA
                     WQLGFLTLTGAMASMGSSALNHYYDRDIDKIMDRTSERPIPAGRISPRNALVYGTTLC
                     ILSLAIAWFTLNPVATGMIALGIFFYVIIYTAWLKRINASNIVIGGFAGSAASMAGWA
                     TATGSINLLGFLIGWLVFMWTPPHFWCLAIRAREEYASVSVPMLPVLVGNKRTASYIF
                     LNTAILLPYSLTLYFFGLGIVYTTVATIAGALMLLYHYKLTKTPTAEFAWKAYKVTAP
                     YLVVIFIAIAVDAFFYYRF"
     gene            complement(4185..4409)
                     /locus_tag="VE223_03645"
     CDS             complement(4185..4409)
                     /locus_tag="VE223_03645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20717.1"
                     /translation="MKYPLRNLVYEKVKQAGNITDSDLVNALNKDAISLNEADLNKIL
                     LDLEIYGLIRVSWVTKDKRRIETAVNSRSL"
     gene            complement(4457..6655)
                     /locus_tag="VE223_03650"
     CDS             complement(4457..6655)
                     /locus_tag="VE223_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HZC20718.1"
                     /translation="MKKSNGSSNESSLPKVQLRVAEAKHRDIGKGRTRIDPVYLRILG
                     IEAGEVIELIGKRKTAATAWPSDEEEKETDIIRMDGQTRKNAGVGLNDLLIVRKIDAK
                     TARTAVLMPLVNSTINVDKEFCEFVKNRLRGFPVNEGDEISVVILGNPINFRIERVSP
                     RSIVKIELSTKLHILSEIVVDKKPRVTYEEIGGLKEQIKRLREIVELPLRHPEVISRL
                     GIEPHSGILMFGSPGCGKTLIAKALAAESEANFYIINGPEIVNKYYGETEARLRDIFK
                     EARDSAPSIIFIDEIDAIAPKREEAFGDVEKRVVAQLLSLMDGMSERGNVIVLGATNR
                     PESIDPALRRPGRFDREIEIGVPNAEGRLEILQIHTRGMPLGEDIDLQQLASELHGYT
                     GADIKALCREAAMKALRRYLPEIDLEGEKISPDTLGMIEITNKDFKEGMKEIIPTAMR
                     EFYVEVAHVRWNNVGGLYDAKQTLYDNLITAIKEPESFSKMGIEPPRGALLFGPPGCG
                     KTLIATSLATESNANIIIVRGPEILSKWVGESEKAIREIFRKAKSSSPCVVVIDELDS
                     LARPRGDDDISGNERVLSQILTEMDDSGSSDVIVIGVTNRPDLIDVSLLRPGRLDLIL
                     YIGPPENKARLEIMQILTSSMPLAEDVNLYDISQSTKGFSGADLVALCREAAVNAMRR
                     KADIVCKGDFAKSLHMVKPSITKDVEDWYESIKKNVTYALPKPIDKVFYG"
     gene            complement(6708..6992)
                     /locus_tag="VE223_03655"
     CDS             complement(6708..6992)
                     /locus_tag="VE223_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 1-beta"
                     /protein_id="HZC20719.1"
                     /translation="MASRVVVRIRILPAEADSDLDNIIDGLKNKIPKDMQLKAHAKEP
                     IAFGLQAIIADFLINDEEGQIDTLEDSIKTTEGVGEIEIINISRQFVKTT"
     gene            complement(6995..7174)
                     /locus_tag="VE223_03660"
     CDS             complement(6995..7174)
                     /locus_tag="VE223_03660"
                     /inference="COORDINATES: protein motif:HMM:NF011481.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HZC20720.1"
                     /translation="MSKPLQLPICTSCSRPIMPNDECVKYYCPNCGYVLIWRCQSCRE
                     FARSYKCIGCGFEGP"
BASE COUNT         2179 a         1387 c         1336 g         2276 t
ORIGIN      
        1 gtatttcgtg aatcaagaaa atacaaaggc ggtattgtga tcacggcgtc acacaatcct
       61 ttggaatgga atggattaaa gtttataatt aatggtcggg ggcttttcga aaatgaattg
      121 gattttatgc tcaggggaaa acacgtatcc aaaccaaaca aatttggcaa atcatttgat
      181 attgtatcga attacgtaga tgaagtctta gatttgatct caaaacaaga taaaaataat
      241 ggcgtatttg gaatagacct tggaggagga gctgcgtgtg gctattctaa ccaattattt
      301 gaaaaactag gcaagaaaat ctactccatc aatgatatat atggtatgtc ttccaggggt
      361 ccagatccca ctatagatga tttgatgcaa ttgcgaaact tagttatatc aaatcatctc
      421 gacttgggat ttgcatttga tttagatgga gacaggcttg tagtagtaaa cgaaaaagga
      481 gaaaagttag gtgccgatgc aacacttctc atatgtattg ctagctctat caatttagga
      541 atgaaaaaat tcgtagcgag catagacact agtttatccg tagagaaata tgtggtcgaa
      601 aacgggggaa agctctatta ttcgaaagta ggcgaagcaa atgttgtcaa caagatgata
      661 gaggtagatg ctgacgcagg gggcgaggga agcagtgcag ggtttattat gccaaaattc
      721 aatatgtgta gagatggtct tttatcaagc gcaattatat cttcagatat taaagtaatt
      781 gagaaatgtc taggcttctc ctctcaatac aatcaggtta gatctaaaat atatatagat
      841 tccgcaattc aacccaaact catcgataaa ctaagagata tattagcagt agaatcgtct
      901 cacgttttga acatagacgg cttgaaagca atagtcgatg atgattcatg gattcttcta
      961 cgaccttcaa acactgaaaa tgctcttaga atatctgttg aatcaaaaac atcaagggtg
     1021 caatcattgt atatggagac tatgaaaagg gttcaaaagg tatatgacca aattaaatga
     1081 aacggaaatt attgatcttt ttatctccaa acttcgaata aaggaagaaa gggatgatat
     1141 agcaacattt gctttaaaag agccaaagag gcgggcctca aacactcatc gactccttgt
     1201 tcttaaatgt gacatgcttg ttgaaagcac ggacgtacca atcggaatgc gaccgcggca
     1261 cattgcaaga aaaagtatag ttgcatgcat aagtgatctc tctgcaaaag gtatcaggcc
     1321 gccgtacatc tgtgtcgttt caatcggaat tccaacgaag tattctaaaa gtgatatcat
     1381 agatctcgta aacggtttta aaaaggcatc taaagaattc ggagtgaaaa ttataggagg
     1441 tgacactaac aaatctaatg aattgataat tgattgtaat ctagttggag ttgcagctga
     1501 tgatatacac atcccaaaaa gaaatggtgc aaaaccagga gattttataa tctgttcagg
     1561 gaattttggc tataccgcct cgggtttgaa gatcctaatg aatgactcga aggctaaagg
     1621 acaatttgaa aagaaagcta ttttatctgt aatcgatcct agcccaaaac agatatttgg
     1681 aatacgtctt gctaaatatt tctctgcttc tatagattcg agcgatggtc ttgcaatctc
     1741 tctatatgaa ttagcaaaac agagcaaagt caactttttc atagatcata taccaatagc
     1801 aagcggtatc caagaattcg ctaaaaaaaa tgatttagat gctaagtctt tgatttttta
     1861 tgggggagaa gaatatgaaa tagtcgcaac catttcaaga tcgaatttgg agagggcaaa
     1921 atcatttgcc aagaaatcaa aattgaaatt gcatgttatt ggtagagtac aaaaggggtg
     1981 cggcaaggtt tttactataa ataatgggaa aaagtattca cttcttgaaa gccatggtta
     2041 tttacattga caagctcgac ataaatctaa aataagaata atggttatat tcattatgta
     2101 tatagctgaa gatagcgtat tttcaaattt ggtttgagat gttattaata cgtattattt
     2161 aaatgaacta tgaatacgtg cctatttaac acagctgttg tataatcgtc tccttcgatt
     2221 tcttaaatgc aagttaatat ctaatgaaaa gaaacaagaa acattatata aatcatattt
     2281 caacgttata cctatttatg tcagaaagca atgacgttac tcaatatagg tggggagttg
     2341 cccatatctt tagtagctat aataatacgc ttgtgcacgt tacagacatt agcggcgcgg
     2401 agaccatttc ctttagttct ggcggaagac atgtaacagc agacaggtat gaatcatctc
     2461 catatgccgc gatgaaatct gcagtttcag ctgcagatgc agcaaaaact aaaggaatta
     2521 atgctctcca catacgcgta cgggctgttg gaggtgttgg ttcgagaatt cctggaccag
     2581 gcgctcaggc ggctattagg gctttggcaa gagccggttt cagaatcggc cgaattgatg
     2641 atgtcactcc ggttccacac gatactacca gaaagccggg cggaagaagg ggaagaagag
     2701 tctaattcgg ataacaacaa ttaatgattt tggagttgag tgttaaattt tgaatcgata
     2761 tttggttagt cacaggtttc actgacatag cgaataaatt aaatgcaact ttattaagac
     2821 tactaatcag gtatctatat aactgtgaga gtacaggatt atgtagaagt ttcaaaaccg
     2881 aggatagttg tagttcttat aatcacagct gttacttcat tacttgctgg aagtagattc
     2941 gatagtactc ctggagatgc atgggatgtt actgcatggc aactgggttt tcttacacta
     3001 actggtgcta tggcatctat gggttctagc gctctcaatc actattatga cagggatatt
     3061 gacaaaataa tggataggac ttcagaaaga cccattcctg caggaagaat atctccaaga
     3121 aatgcgctag tctatggaac taccctttgt attctttcac ttgcaattgc atggtttact
     3181 ttgaatcccg tagctactgg aatgattgct ttgggtattt ttttttatgt tataatatac
     3241 actgcttggc ttaaacgtat caatgcttcg aatattgtta ttggaggttt tgcagggagc
     3301 gctgcatcaa tggcaggatg ggctactgct acaggatcaa tcaatttact tggcttccta
     3361 ataggatggc ttgtctttat gtggacacca cctcatttct ggtgtttagc aataagagca
     3421 agggaagagt acgcgagcgt tagtgttccc atgctacctg ttttggttgg aaataagaga
     3481 acagcaagtt acatttttct gaatactgct attttactcc cgtattctct aactctttac
     3541 ttcttcggat tgggcatagt gtatacgaca gttgcaacca tcgctggagc tctaatgttg
     3601 ttatatcatt ataaattaac aaaaaccccc acagcagaat ttgcttggaa agcatacaaa
     3661 gtgactgcac cctacttagt agtaatattt atcgcaatag cagtagatgc ttttttttat
     3721 tatagattct aaagtattac aacagattgg aacagatttt atgatgccta ttctctctta
     3781 tcaccctcac tgacagcatt tacagaatga agaaagcttg aaaaaagata tctcgtgtga
     3841 cccaatataa agagctaaat gaaaatgatc aaaagacgct tttatcagga attgctccta
     3901 agggcaacta aatatgatca tattctttca gtgatagaat caaggaactt tgtatattta
     3961 tttctcttac gtgggttagt aaaccacagt agctatgcgt atcctggaag aattcctatc
     4021 ttctacgaaa actatgagtt aattgcttat ggaatttagt atcattagtg acattttcta
     4081 ttccatttac caaccgaaca atttcatctc tcgtcattta gcagaaaatt atggcagacg
     4141 atttttatta tattcttata caaaaatcat aatatgtcat gtctttataa agaccttgag
     4201 tttaccgcag tttcaatcct tcgtttatct tttgtaaccc atgagactct aatcaagcca
     4261 tatatttcca gatcgagtaa aatcttgttt aagtccgcct cattcaaaga tatggcatct
     4321 ttattcaatg catttaccaa atccgaatct gttatgttac ctgcttgctt tactttctca
     4381 taaacaaggt tgcgtaaagg gtacttcatt gtatatacta ataactacat ggtgataacg
     4441 ttatatcaac tctttttcat ccataaaata ctttgtctat aggtttcggc aacgcatatg
     4501 taacattctt ctttatggat tcgtaccagt cttctacatc cttagttatc gatggtttta
     4561 ccatatgcaa tgatttagcg aagtcgcctt tacaaacaat atccgcttta cgtcgcatag
     4621 cattaactgc tgcttctctg catagtgcaa caagatccgc accactaaat cctttcgtgg
     4681 attgcgagat atcatataaa tttacgtctt ctgcaagtgg catggaagat gtcaatattt
     4741 gcataatttc tagtcgcgct ttattttccg gcggaccaat atacagtatc aagtctagcc
     4801 ttccaggacg aagcaaggac acatctatga ggtcaggtct attggtaaca ccgattacta
     4861 ttacatcaga gctgcctgaa tcatccatct cggttagaat ctgcgaaagt actctttcat
     4921 tgccagagat atcatcatca cctctaggcc tagcaagaga atcaagctcg tcaataacaa
     4981 ctacacaagg tgaggaagat tttgcctttc ggaatatttc acgtattgcc ttctcagatt
     5041 ctccaaccca cttggataat atctcagggc cacgcacaat tattatatta gcattactct
     5101 cagttgccaa agacgttgcg attaacgtct ttccgcagcc aggaggacca aacaatagtg
     5161 ctcctcttgg tggttctatt cccattttgc tgaaactttc tggttccttt atggcagtga
     5221 taaggttgtc atacagtgtt tgtttcgcat catataatcc accaacatta ttccacctaa
     5281 catgtgcaac ttcaacataa aattctctca tcgcagtggg gattatttct ttcatccctt
     5341 ctttgaaatc tttgttcgtg atctcaatca ttcctaaagt atcaggagaa atcttctctc
     5401 cctctaaatc aatctctggc aaatatcgtc ttagggcttt catagcggct tctctacata
     5461 aggctttgat gtcagcacca gtatatccat ggagttcaga cgctagttgt tggagatcaa
     5521 tatcttctcc aagaggcatc cctctggtat gaatttgaag aatctccaac cttccctctg
     5581 catttgggac acctatttct atctctcgat caaatcttcc aggacgcctc agagcgggat
     5641 caatactttc aggcctattt gtagctccaa gcactatcac attccctcgc tctgacatgc
     5701 catccattag agaaagtaac tgtgcaacaa cccttttttc gacatcgcca aaagcctctt
     5761 ctctcttagg tgctatagcg tcaatttcat caataaatat gatgcttgga gcagagtccc
     5821 ttgcctcttt gaatatatct cgcagtcttg cttctgtttc accataatat ttatttacaa
     5881 tttccggacc atttataatg tagaagtttg cttctgattc tgccgcgagt gccttagcaa
     5941 ttagcgtttt cccgcagcca ggtgaaccga acataagtat gccgctatga ggttcaatac
     6001 caagtctaga gattacctca ggatgccgta agggtaattc aacaatttct cttaagcgtt
     6061 taatttgctc tttgagtcca ccaatctcct catatgttac tcgaggtttt ttatcaacaa
     6121 caatttccga caatatgtgt aactttgttg agagttcaat ttttacaatc gaacggggcg
     6181 atactctttc gattcggaaa tttatcggat tacccaaaat tactacagat atttcgtcac
     6241 cttcgtttac tggaaaaccc ctgagtctat tttttacaaa ttcacagaat tctttatcaa
     6301 cattaatagt gctattcacc aaaggcatca aaactgcagt tctagcagtt tttgcatcaa
     6361 tctttcttac aatcaagaga tcatttagac ccacacccgc attcttcctt gtctgaccat
     6421 ccattcgaat aatgtctgtc tctttttctt cttcatcaga gggccaagca gtcgctgcag
     6481 tcttgcgttt gccaatcaat tcaataactt cacctgcctc aatccctaat atccgcaagt
     6541 aaacaggatc aattcgtgtt ctacctttgc ctatgtctct atgttttgct tcggccaccc
     6601 ttagttgaac ttttggtaat gatgattcat tactggatcc gttagacttt ttcaagtctt
     6661 acctcctaga gattcgcagt tgattttggc atcctgctgt gcaattttta tgtcgttttt
     6721 acaaattgtc tgcttatgtt aattatttct atttcaccaa ctccttctgt cgtttttatt
     6781 gaatcttcaa gtgtgtcaat ttgaccctct tcatcattta ttagaaaatc agcaataatt
     6841 gcctgtaagc caaaagcaat aggctcttta gcatgggcct taagttgcat atcttttgga
     6901 attttatttt ttaaaccatc tattatatta tccaaatcag aatctgcttc ggccggcaga
     6961 attctaatcc ttacaacaac gcgtgaagcc atttctaggg accctcaaac ccacatccta
     7021 tacatttata acttctagca aattctctgc agctttgaca tcgccaaatc agaacatagc
     7081 cgcagttagg gcaatagtat ttgacgcatt catcattagg cattataggt ctgctacatg
     7141 atgtgcaaat aggcagttgc aacggttttg acatatat
//
LOCUS       DASQSJ010000185         2464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_341327, whole genome shotgun sequence.
ACCESSION   DASQSJ010000185 DASQSJ010000000
VERSION     DASQSJ010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341327"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(256..1443)
                     /locus_tag="VE223_03665"
     CDS             complement(256..1443)
                     /locus_tag="VE223_03665"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HZC20721.1"
                     /translation="MVTAKEVLILGGGFGGLASANLLRKNLAQEECQITVIDKNQHFM
                     MGLVNLWMLSGSRRLGDSQVALSKLEDKGIRFLNDEIICIDLSENMITTKTNHNKLRY
                     DYLIVALGADLAAKRINGFEGNANCFNVYDAYQVQSLRERILALKSGRIVICIADIPY
                     KCPPAPYEASLLINDILIKNGTRQYIDLDIYTPTPISLPAAGAKVSQDVIKLLNDNHI
                     KFHPLHKLKTVLDNRTIGFENGIKTSYDLLVLVPLHQVPQVIKNSGLLVDAEQRWINV
                     DRFTLRTKYKNVFAIGDVTEIRVDNAITVPKAGIFAEGEAKAVSQQIINEIKYYDGNK
                     EHVKFDGKGFCFMEVGDKKAGYIDVDLYNEAGPTTRLDPPSYEFYQKKLDFERSRLYE
                     WLM"
     gene            1823..2041
                     /locus_tag="VE223_03670"
     CDS             1823..2041
                     /locus_tag="VE223_03670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20722.1"
                     /translation="MSSETELTDTAYDILKVMGKDADFLYDTIETYIKDAQKANKSDL
                     VEIWQTIRNDRKRHMHLLKGALEKEIHG"
     gene            2195..>2464
                     /locus_tag="VE223_03675"
     CDS             2195..>2464
                     /locus_tag="VE223_03675"
                     /inference="COORDINATES: protein motif:HMM:NF017936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZC20723.1"
                     /translation="MVLKKEAAEYWINKLKLHKHPEGGYFVETYKSEKFVNLHEYDGP
                     RHACTAIYYLLVGDEFSSFHRIKSDELWHFYAGSSLTLHVIGTDGK"
BASE COUNT          784 a          449 c          415 g          816 t
ORIGIN      
        1 cagaagcata ctatgagaag tttagaagtc aacactttcc tgacctaggt aagattaact
       61 atattcaaaa gccaattgga aatcaagaat tggtacaaat agtaaatacg atattagcaa
      121 attcgataac tattgactaa gagcctacac caatactagg ctgttgctgt tattatcagt
      181 aagcctagtg atgagcgtga tatctcattg atgataacag gcgaaatcag ggtagtaaaa
      241 aacactatat ctagattaca tcaaccattc atacaatctg cttctttcaa aatcaagttt
      301 cttttgatag aactcgtacg agggtggatc aagtctagta gtaggaccag cttcgttata
      361 caagtcaaca tcgatatatc ctgctttttt atctcctact tccataaaac aaaatccttt
      421 tccatcgaac ttaacgtgtt ctttattacc atcataatat ttgatttcgt taatgatttg
      481 ctggcttact gcctttgctt cgccctctgc aaatattccc gctttaggga cggttatggc
      541 gttgtcaact ctaatctcag ttacatcacc tattgcaaaa acattcttgt attttgttct
      601 aagagtaaat ctgtcaacat taatccagcg ctgttctgcg tctactagta gtccggaatt
      661 cttgatgact tgaggaactt gatgaagagg aactaataca agcaaatcat agcttgtctt
      721 aatgccattt tcaaacccta ttgttctgtt atccaaaact gtttttagtt tatgcaatgg
      781 atggaacttg atatggttgt cattaagtaa cttgataacg tcttggctta ctttggctcc
      841 agctgcaggt aatgaaattg gtgttggtgt atagatgtcc aaatcaatgt actgtcttgt
      901 tccatttttg atcaagatat cattgatcaa tagcgacgcc tcataaggtg cgggtgggca
      961 tttatatgga atatcagcta tgcagattac tatacgccca ctttttagag ccagtattct
     1021 ttctcgtaga ctttggactt gataagcatc atatacgtta aaacaatttg cattaccttc
     1081 aaacccatta attcgttttg ctgcaaggtc tgcacctaat gccactatca aataatcgta
     1141 tcgtagttta ttgtggttgg ttttagtggt aatcatattt tcggaaagat caatacatat
     1201 tatttcatcg ttcaaaaatc taattccttt gtcttctagc ttactcaacg caacttggga
     1261 gtcacctaat cttctgcttc cactcagcat ccatagattt acaagtccca tcataaagtg
     1321 ctggtttttg tcgatgactg taatttgaca ttcttcttgt gcaaggtttt ttcgtaataa
     1381 gttagctgac gccaaccctc caaaaccccc tcccaagatt aagacttcct ttgctgtcac
     1441 catagagtaa agaaagattt ttgcttttta agcatttcaa taataggaat taattatcct
     1501 ttttggcatg ctaactgtag ttaaccttcc aaatcctgct cctataatta ggctagagta
     1561 agtaaatata atccttctat tagccacaaa agtagaacct aaccatggac agatcataaa
     1621 taatgttcta aggttgtttc agcatctttg gatactcaga tacgagaaat tactatgcaa
     1681 cattgaggac aatactactg ctattttgct gctgtagtct attgtatact actggcctat
     1741 aatttgctgg attctttctc aaaatatact aatcatcaaa atttatattt ttttatatta
     1801 gtatatcttt tattaatcta acatgtcatc agaaacggaa ttaacagata cagcatacga
     1861 tattctaaaa gtaatgggta aagacgctga ttttctgtat gatacaatcg aaacgtacat
     1921 caaagatgca cagaaagcca ataaatcaga tttagtagaa atatggcaaa caatcagaaa
     1981 tgatagaaaa agacatatgc atctccttaa aggagcatta gaaaaagaaa ttcacggata
     2041 gattttcaat ccgaatgaat tgtaccatta gatcgcagca acttcaatgg tgaaagatat
     2101 aatgatgcaa aattacattg tattataaat gccacttgag ctattgtgtg aattttttag
     2161 caaatctcta ttaacattag tcctgtagaa ttccttggtc ttgaaaaaag aggcagcgga
     2221 atactggatt aacaaactta aacttcataa acatccagag ggaggatatt ttgtcgaaac
     2281 ctataagtct gaaaaatttg taaatctgca tgaatacgat ggacctcgtc atgcttgcac
     2341 tgctatctat tatttactag taggagacga gttttcatct tttcacagaa tcaaatcaga
     2401 tgaattgtgg catttttatg ctggcagcag tttgactctg catgtgatag gaacagatgg
     2461 aaaa
//
LOCUS       DASQSJ010000186         2011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_181374, whole genome shotgun sequence.
ACCESSION   DASQSJ010000186 DASQSJ010000000
VERSION     DASQSJ010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181374"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..755
                     /locus_tag="VE223_03680"
     CDS             60..755
                     /locus_tag="VE223_03680"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HZC20724.1"
                     /translation="MSSSIRIGTSGYTYPWNEGRNAPFKWYTSQGFNSVEINASFYRF
                     PTESWLKIWRTAPEDFTFSIKVHRSITHFTKLKKDRSFELWERFRRSFEPLEDKIDFW
                     LFQMPPSYIYKQENLGATKDFFGGINLGNKAVVEFRDPSWWKIIKQIAHIGVVFCSVD
                     APGLPDNLAAINNATYLRLHGSDKWYDYVYSQKELDKILLRVKKLKVDKKAIYLNNDH
                     GMLKNGRYLLKRV"
     gene            complement(878..1054)
                     /locus_tag="VE223_03685"
     CDS             complement(878..1054)
                     /locus_tag="VE223_03685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20725.1"
                     /translation="MASSDWWIKPHVFKTWGSFITTADSRGGYYSQLSDGASDEIVEY
                     GLTIITTLLQHQKS"
     gene            1514..1828
                     /locus_tag="VE223_03690"
     CDS             1514..1828
                     /locus_tag="VE223_03690"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HZC20726.1"
                     /translation="MALYGIYGSHSPESCPLNNVEIRRLVIKMAEQLGNVLAKHKTKM
                     LQQYHSGLEHTFLWIVDAQDAHSVQALMVETGWIRFNTLKIVPLTDYQNVVETCKNAE
                     EQ"
BASE COUNT          638 a          372 c          414 g          587 t
ORIGIN      
        1 cttgacagcg ataggtgtaa aaggtcaact ccaatagtaa atcataacag taaagtgcat
       61 tgtcatcatc gatacgaata ggaacttcag gatacaccta tccttggaat gagggtagga
      121 atgctccgtt taaatggtat acgagtcagg gttttaactc ggttgaaatc aatgccagtt
      181 tctaccgttt tcctaccgag agctggttga agatttggcg gactgctcca gaagatttta
      241 ccttttcgat caaagttcat cggtcaatca cacatttcac caaattgaag aaggatagat
      301 ccttcgaact atgggaaagg ttcaggagat ccttcgaacc actcgaagac aagattgatt
      361 tctggctgtt ccagatgccg ccaagctaca tttataaaca agagaatctt ggagcaacaa
      421 aagatttctt tggagggatt aaccttggaa ataaggctgt tgtggaattc agggatcctt
      481 cgtggtggaa gatcataaag caaatagcac atataggcgt ggttttctgc tccgttgatg
      541 cgcctggcct tcctgacaac ttggcagcca tcaacaatgc aacatatctc aggcttcatg
      601 gctcagacaa atggtatgat tatgtatact cacagaagga gcttgataaa atattattga
      661 gagtcaaaaa gttgaaggtt gataagaaag caatatatct aaataacgat catggtatgc
      721 tcaaaaatgg acgatatcta ttaaagcgtg tgtagcagaa ctgaagaccc acttttcaaa
      781 gcctcagatc tacgaaccgg caagaagctg ctcgaatgat aatttagatc aatcccgcaa
      841 ttatctccga tttgattacg cattatctat gcttggatca acttttttgg tgttgtaata
      901 atgttgtaat aatcgttagt ccatactcta caatttcgtc agatgcacca tcagagagct
      961 gtgaatagta tcctcctcga ctgtctgcag ttgtaataaa cgaaccccaa gtcttgaata
     1021 catgcggttt tatccaccag tcggaagagg ccaagctata aaggagagct atgtgacata
     1081 cttatgactc aatgattttg atggctcaat atgatgctcc atgatccacg ttattttctg
     1141 atcctggaat attttatcca gatcgctgga caaaggaggt aactttcggc ttcctctgag
     1201 gagccgttgc ataattgatt gagtcatttg catgaatgca aagtatgtta catctagcca
     1261 atctagccac aatatctggt ctttggtgtt gacctaagat agatgctgca tcaagattaa
     1321 gattagtctc aataaggtgg tcgattgaat ctgcagactt tggcaaatgc gatagcagca
     1381 acatggttac caattttagt atcaatagta atctcattat tcttctttca atatgaaaaa
     1441 agaaaaaatt taacctatct ggttgggaat attagtacca attgttatta atcatcatat
     1501 atatacacta cgtatggcat tatatggtat atacggaagc cactcaccag aaagttgtcc
     1561 actaaacaat gtggagatta gaagacttgt cataaaaatg gccgaacagc tcgggaatgt
     1621 tctggctaaa cacaaaacaa agatgctgca gcaataccat tcgggattag aacatacttt
     1681 tctatggatc gtcgacgcac aagacgctca ttcggtgcag gcgcttatgg tcgaaactgg
     1741 atggataagg ttcaatactt taaagatagt tccgttgaca gattatcaaa atgttgttga
     1801 aacatgtaaa aatgcagagg aacagtaact cacaaagcca agaagttgtc acaacgagtc
     1861 taatcatctt cgacaacctt attcaactca aaatatgaaa atatggaaaa acagtgggtg
     1921 tcgtttagat atctagttag tgttggttgt tgcattaatt taaatttgaa cgggcctgta
     1981 aatggtcctt ctgttttcct ctaactagtt t
//
LOCUS       DASQSJ010000187         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_460748, whole genome shotgun sequence.
ACCESSION   DASQSJ010000187 DASQSJ010000000
VERSION     DASQSJ010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460748"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..673)
                     /locus_tag="VE223_03695"
     CDS             complement(83..673)
                     /locus_tag="VE223_03695"
                     /inference="COORDINATES: protein motif:HMM:NF015057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20727.1"
                     /translation="MRKEWNEIKREKLQIFVCEQYHIIKNDRRSFAFMISKSSDDVAA
                     ELFTDCLSAETRALDSLTLLAQELGIRGGSSDRIESYEPLAGCQAYTNYLTRLAVYGS
                     DAEILAAMLVDLPVWGSNCSKISSFLKKNHGFTNSSCIFLDQFATPIPEDFIKKSNIL
                     MIGHKVPQKVNAMQRAARLILEYELLFWNTIYIRSI"
     gene            complement(649..855)
                     /locus_tag="VE223_03700"
     CDS             complement(649..855)
                     /locus_tag="VE223_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20728.1"
                     /translation="MGNTSYCLSNHQDISEGDSIRIYVTLHDGKNQNNNNSFIEKLKS
                     SYSKTIDAILNHPYLEALEKNGMK"
     gene            989..2269
                     /locus_tag="VE223_03705"
     CDS             989..2269
                     /locus_tag="VE223_03705"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HZC20729.1"
                     /translation="MQYVQSQKVDDSWSFKDLSRLQTSYITHDYHRYPAKFIPQLAGR
                     IIKENSRVGDLVCDPFMGSGTTLVEAIVNERHAYGTDINPVSVLITKAKTTPIEPVSL
                     KQQASSLLGKIKSGIENRHGQMLLVTDDFDIKIPDNTRLDYWFPEKQKKDLATILSII
                     NTIEDQRMRIFSLCAFSNILKGCSNWMMKSVKPTQDKEKIIADAYRSFVFQIRKIVAK
                     NEEFWNMVAGKEIHCIVDNTDARKMKISDDSAAVIVTSPPYVTSYEYADLHQLTAIWL
                     GYANNLSEFRSKFIGSIQKDIKSIKLYSKTGKETVDKLSPIDKREANGVEQYFFEMQQ
                     CFEEMHRVLKHGGKAAIVIGDTDLKKVKIQNANVFAETMENIGFKIYNIIKRPIPSKI
                     LPLTRDEKTGRFAATTTSNRLAYPTEYILIMEKP"
BASE COUNT          797 a          395 c          436 g          699 t
ORIGIN      
        1 aagcatagta aagtagccaa acaatgtaat tttgacacat cggaaaatgc atgacagcgt
       61 aataggtaat atccaatatc gactatatgg agcggatgta aattgtattc caaaataaca
      121 attcatattc gagaattagc ctggctgctc tttgcattgc atttactttt tgaggaacct
      181 tatgccctat catcagaata ttggattttt tgataaaatc ttcaggtatt ggagtcgcaa
      241 attgatctaa gaatatgcag gaactatttg taaagccgtg gttcttttta agaaaggagc
      301 ttattttact gcagttagat ccccaaacag gaaggtcaac aagcatggct gcaaggatct
      361 ccgcatctga accgtagact gcaagccttg taagatagtt agtataagcc tgacatcctg
      421 ccaatggttc gtatgattct attctatcgc tactaccacc tcgaatacct aattcttgtg
      481 ccagcaaggt tagactatcc agagcccttg tttcagcaga aaggcaatca gtaaatagtt
      541 cggcggctac atcatctgac gactttgaga tcataaaggc aaagcttctt ctgtcgttct
      601 tgattatgtg atattgctca catacgaaga tttgcagttt ttctcgtttt atttcattcc
      661 attcttttct aatgcttcta agtaaggatg attaagaatg gcatcaatgg ttttagagta
      721 actacttttt aacttctcaa taaaactatt attattgttt tgattcttgc catcatgcag
      781 cgtcacatat atccttatgg aatctccttc acttatatct tgatggtttg atagacaata
      841 ggaggtattt cccatggcta catttgcaga tgaattaaag ctatcagtta cggaaacatg
      901 aaaaaaatta taatactaag aaattataaa atttaaacaa tgccatcaaa ctaatattac
      961 tataaagcag ttatagaaat ttaaactaat gcaatatgtg cagtctcaga aagtggatga
     1021 ttcctggtca tttaaagatt tgagtcggct tcagacttct tatattactc atgattacca
     1081 taggtatcct gccaaattta ttccacaatt agcaggaaga atcatcaaag agaatagcag
     1141 agtaggagat ctggtttgcg acccatttat gggctctggg accacactgg ttgaagcgat
     1201 cgtcaatgaa aggcatgctt atgggactga tatcaatcca gtatcagtat tgataactaa
     1261 ggctaaaact actcctattg aacctgtgtc tctaaagcag caagcctcat ccttgttagg
     1321 caaaataaaa tcagggattg aaaatagaca tggacagatg cttcttgtaa cagatgattt
     1381 tgatatcaaa atacctgata atacgcgact ggactactgg tttccagaga aacagaagaa
     1441 agatttagca actatactat caataattaa tacaatagag gatcaaagga tgcgcatatt
     1501 ttcactttgt gcattttcta atattttgaa aggatgttca aattggatga tgaaatcagt
     1561 gaaacctaca caggacaaag aaaagataat tgctgatgca taccgaagct ttgtctttca
     1621 gatcagaaag atagtggcaa aaaacgagga attttggaat atggttgctg gaaaagagat
     1681 ccactgtatt gttgacaata ccgatgcacg aaaaatgaaa ataagtgacg attctgctgc
     1741 tgtgattgtt acaagtccac cctatgttac ttcatatgaa tatgctgatc ttcatcaact
     1801 tactgcgata tggttaggat atgccaataa tttatctgaa tttagaagca aattcatcgg
     1861 ttcaatacag aaagatatca aatctattaa attatacagc aaaacaggaa aagaaacagt
     1921 tgataaactt agcccaatag acaaaagaga agcaaatgga gttgagcaat atttctttga
     1981 gatgcagcaa tgctttgaag agatgcatag ggttttgaaa catggcggta aagctgctat
     2041 agttattggc gatactgacc ttaaaaaagt caaaattcaa aatgcaaatg tctttgctga
     2101 gactatggag aatataggct tcaagatcta caatattatt aaaagaccaa ttccaagtaa
     2161 gattcttcca ttgaccagag atgagaaaac gggtcggttt gcggccacaa ctacatctaa
     2221 cagattagca tatcctaccg aatacattct cataatggag aagccttgag gtgagcttcg
     2281 cttctaaaga tttagtgcta ttatatgaaa acaagaagaa aatattt
//
LOCUS       DASQSJ010000188         2772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_500632, whole genome shotgun sequence.
ACCESSION   DASQSJ010000188 DASQSJ010000000
VERSION     DASQSJ010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500632"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..1667)
                     /locus_tag="VE223_03710"
     CDS             complement(78..1667)
                     /locus_tag="VE223_03710"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC20730.1"
                     /translation="MGTSDRSTSYWILIIILSSVAIVVEYTETMLFPAIPSIVEDFET
                     TYNYSSWILSGFLITAAVMCPIAGKLSDIFGKKNVFLAIMAIFAGSVVLGSFTNSISF
                     LIATRFIQGIGLSTFTVALSIMEFEMPKEKYALAFGSMTATYFGGSTIGLTLGGVITE
                     YFGWHMTFISLIPIVVILFVLILKFLKIKGDLLQQQQQQQQQHTYRQFLKRAKSSLSH
                     TSNAITKNSVHEQKEYYTDERHPIHEVLDIKGAIALGASISSFLASLTYITNSGEFSS
                     LALFGGLLTVSAISILIFIIQEKRSVSPLIKGSLILNKIALPAIFMLTIYGMTLFILY
                     QTIPVLVTAPSPAGFGGSSVTASFVLLPFTIIFLVMSPVVSVIVSKFGNIRPLIVGSL
                     MCVVGFFGLLFFHSTELDVSTNLSLVAVGLALIDTIAFSIIMISTPKQFGGISIGMVQ
                     VLLFGGMSIGPVVAAINLQNHQIIVATNTSESDSFPSSLSYYHVFLTAALASIVFVVA
                     AAVLKKTLPSNLSNPQIRSFK"
     gene            2054..>2772
                     /locus_tag="VE223_03715"
     CDS             2054..>2772
                     /locus_tag="VE223_03715"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC20731.1"
                     /translation="MKFPPGDKKRPPLPFPSVPSDNNNIKKDSEHQEKITPFAWKVLF
                     ILSAIAALVMYAETMISIAIPEIIKEFSISYNTSSWILTIYLIVGGIMTPISGKLSDT
                     YGRKTILLFIVAAYVTGVTIGGFSSNIYIILAARVFQGIGMSFFPIAYSIIKDIFPSG
                     KMAIGQGIVTSMFASGSVLGIILGGPIIQYYGWKMTYFSLIPIAIALLFVVGRLTTGI
                     EKQQKGQKQEPGIITHKSELPV"
BASE COUNT          959 a          480 c          501 g          832 t
ORIGIN      
        1 taatcttata cttttctaca accgctccag tactgcagcc acagcaataa ctaatatcgc
       61 tattgtcgca attccgtcta tttaaaactg cgaatttgtg gatttgatag atttgatgga
      121 agtgtcttct tgagaaccgc agcagctacc acaaatacta tggatgccaa agcagctgta
      181 aggaatacat ggtagtatga taaggaagag ggaaaagaat cagattctga agtgttagtt
      241 gccacaatta tctgatggtt ctggagatta attgcagcaa caacaggtcc tattgacatt
      301 ccaccaaaaa gtagaacctg aaccataccg attgatatcc caccaaattg ttttggcgtt
      361 gagatcatta tgatactaaa tgcaatagtg tctatcaagg cgagcccaac tgctacaaga
      421 gacaagtttg tagatacatc taattctgtc gagtgaaaaa ataggagtcc aaagaaacca
      481 acaacgcaca ttaatgaccc tacgataagt ggtcgtatat ttccaaattt ggatactatt
      541 acactgacga cgggcgacat aactaggaat ataattgtaa aaggaagtaa tacaaatgaa
      601 gcagttacag agcttccacc aaaacctgcc ggtgatggag ccgttactaa aactgggatt
      661 gtctgatata gtataaacaa agtcatccca tatattgtca acatgaaaat tgctggtagg
      721 gcgattttgt ttagtattaa actaccttta attagtggcg atacggatct cttctcttgt
      781 atgataaata ttaatataga aatagctgat acagttaaca accctccgaa taatgccaag
      841 ctagaaaatt cacctgaatt agtaatgtat gtaagagaag caagaaatga gcttattgat
      901 gcacctaaag ctatagctcc ttttatatct agaacctcat ggattggatg cctttcatcg
      961 gtatagtact ctttctgctc atgtacgcta ttttttgtaa tggcattact tgtatgacta
     1021 agagatgact tcgccctttt tagaaactgt ctatatgtat gttgttgttg ttgttgttgt
     1081 tgttgttgca gtagatctcc ctttattttt aggaatttta aaataagtac aaataatatt
     1141 actacaattg ggatcaaaga aataaatgtc atgtgccaac caaaatactc ggttataact
     1201 ccacctagtg ttaaaccaat tgttgagcca ccaaagtatg tagctgtcat actcccaaaa
     1261 gccagagcat acttttcttt tggcatttca aattccataa tcgataaggc tacagtaaaa
     1321 gtcgataaac caattccttg aatgaatcga gtggcaataa gaaaggatat gctattcgta
     1381 aagctaccca agaccacact ccctgcaaaa atggccatta tggcaagaaa aacattcttt
     1441 ttaccaaata tatccgagag ttttccggct atagggcaca taactgcagc cgtaatcaaa
     1501 aacccagata gaatccaaga agaatagtta taggtagttt caaagtcttc tacaatgctt
     1561 ggaatagcgg gaaataacat ggtttctgta tattctacta caattgcaac tgagcttaaa
     1621 attataatta aaatccaata acttgtggat cgatctgatg ttcccatttt ctctagatgt
     1681 acgtttacaa tcatcaggat ttaatatgaa tttcgagtaa gtagtaggta ttgttacatc
     1741 tctttcgatc aatatggtta tgacgattat gacaatggta aaaataatag tgatggtgag
     1801 tatcgagatt aatggctaag gaccttgtta aatctaacat atatcataac agcctaacat
     1861 tcttagaaga ttaaggattt tgaactacac ttgacaaatc taacgatgag tatgagagaa
     1921 gaacaggtag agcagaacaa taagaaagat aactacacag tatgaacaat gtaattttaa
     1981 agctaggtac gatagaaaat aaataacacc tcctattata catagacaac caaaatttac
     2041 aagttgaaca tttatgaagt ttccacctgg tgacaaaaag aggccaccat tgccttttcc
     2101 ttcagtacca agtgacaata acaatattaa gaaggatagt gaacaccaag aaaaaatcac
     2161 tccatttgca tggaaagtac ttttcatcct aagtgcaata gcggctcttg ttatgtatgc
     2221 cgaaacaatg atttctatag ccattccaga aattatcaaa gaatttagta tttcttataa
     2281 tacatcttca tggatactga cgatatatct tattgtaggg gggataatga cacctataag
     2341 cggtaagtta tctgatacat atggaagaaa aacaatcttg ctgtttattg ttgcagccta
     2401 tgttacagga gttacaatag gagggttttc tagcaatatc tacattatac ttgccgctag
     2461 agtatttcaa ggaattggca tgtctttctt tcctatagca tacagcataa taaaagatat
     2521 cttcccatct ggcaaaatgg caataggcca aggaatagtt acctctatgt ttgcatctgg
     2581 ttctgtgtta ggcattatac ttggaggacc tataatccag tattatggat ggaaaatgac
     2641 atatttttcg ttaataccta ttgcaatagc attgttattt gtagttggaa gattaacaac
     2701 tggtattgaa aaacaacaaa aaggacaaaa gcaagaacct gggattatta ctcataaatc
     2761 agagctacct gt
//
LOCUS       DASQSJ010000189         2103 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_460789, whole genome shotgun sequence.
ACCESSION   DASQSJ010000189 DASQSJ010000000
VERSION     DASQSJ010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460789"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            395..1435
                     /locus_tag="VE223_03720"
     CDS             395..1435
                     /locus_tag="VE223_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent dehydrogenase"
                     /protein_id="HZC20732.1"
                     /translation="MMKAVSVKGKGLISVNEVAAPKLMGDGDVLIKMHACGVCGSDLE
                     KVYGQYGMSSAKLGHEPSGEIINVGKSVKNLDPGDRVFIHHHVACYSCHFCRHGDYTM
                     CDMYQKSNIIPCGLSEQILVPEWNVSRGGLIKLPGNITFDEASLIEPLACCIRSLNKC
                     NFQKGDDIAVIGAGPAGMMHVMLAKTFGAGKIIVLDVNDFRMDFAKRKYGVNETFNPT
                     EKDVPHKIKSLTGTRGVDVSIVATGNERALIQSVEITRKAGKIMLFGVPSKGTEVPID
                     LNKIYSSEQSLIPCYASSEIETNQALKLITERQIDVKSLITHRFGINSADEAIRCAHE
                     AKDVMKVIVTSE"
     gene            complement(1710..1937)
                     /locus_tag="VE223_03725"
     CDS             complement(1710..1937)
                     /locus_tag="VE223_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HZC20733.1"
                     /translation="MNCTLGSEENIISEIAKLVGVEEVRGTYGVHDIFVKVKSDNTEA
                     MNHTITNKIRKIPGITSTVTLVVIEEQGGRG"
BASE COUNT          655 a          387 c          410 g          651 t
ORIGIN      
        1 ccctgccaaa actacacact agtttgacct agagcagcag cagacaaacg cagttgcagt
       61 agtatcctag agagaagtta tacaaaactt ttcaccttta gcccaaggca ttattgttaa
      121 cctgcaatga cacaatttat aaagatttgc cccgagaaag ccaaaattta tcgaaacgca
      181 gcgatgaaca ggattataca tattattgtc atcatcacat ttatcatata tctttaggtg
      241 tatactttgc ataattaaaa tatatatcaa aaaacattca acagttctgt ttgaatatgg
      301 tagactcgct caattaccat gatgcacttt ttaacgcaga taccgcagct catattgacc
      361 aaacatattt gttatactcg aattcaattc attgatgatg aaagctgtct ctgtaaaagg
      421 caaaggtttg atttcggtta atgaagtagc agctccaaaa ttaatgggag atggagacgt
      481 tcttattaaa atgcacgcat gtggagtatg tggttctgat ctcgagaaag tatacggtca
      541 atatggaatg tcttctgcca aacttgggca tgaaccttca ggagagataa taaatgtagg
      601 gaaatctgtg aagaaccttg atccgggtga tcgtgttttc attcatcacc acgttgcatg
      661 ttattcgtgc cacttttgta gacatggaga ttatactatg tgtgatatgt accaaaaaag
      721 taacataatt ccatgtggcc tgtcagaaca aatcctggtg cctgagtgga atgtttctcg
      781 tggaggactt ataaaattac ctggcaatat aacgtttgac gaagcttcac tcatagaacc
      841 attagcctgt tgtataagat cattaaacaa gtgcaatttc cagaaaggcg acgatattgc
      901 agtaatagga gcaggtccag ccgggatgat gcatgtaatg cttgcaaaaa catttggagc
      961 tgggaaaatc attgtactcg atgtaaatga ctttagaatg gattttgcaa aaagaaaata
     1021 cggagtcaat gaaacattta atcctacaga aaaagatgtg ccgcataaaa taaaaagtct
     1081 cacagggacc agaggtgttg acgtatcaat tgttgccacg ggaaatgaaa gggcattaat
     1141 ccaatctgtg gagataacaa gaaaggcagg caagatcatg ctttttggag ttccatcgaa
     1201 aggtactgaa gttcccattg atcttaacaa gatatactca agtgaacaat ctcttatccc
     1261 atgctatgct tcctcagaga tagaaacaaa ccaggcgttg aaattgatta ctgagaggca
     1321 aattgatgta aaatcattga taactcatcg ttttggcatt aatagtgccg atgaagcaat
     1381 aaggtgtgca catgaagcaa aagatgtaat gaaagtgatt gttacatcgg aatgaaactt
     1441 gcattgtcat acaaacccaa ggtttagcgt taggtgtcct ctgttagatt gtgataatgc
     1501 gagcaacgtc accatcttct tttgcaattt aatctcccgc tgtgctattg aaagtttggt
     1561 tgcgttgaat tctccttagc tgtgcctttt ctagcaagca attaatctga ccttgactaa
     1621 tggatgttga attggatcat tggtaaatat tataccattg atccaactaa gatagatgtt
     1681 gttattacac aatggcaaaa gagacttgcc tagcctctcc caccttgctc ctcaataact
     1741 accaaagtca ctgttgaggt tattcctggt atctttctta ttttgttagt tatggtatga
     1801 ttcattgcct ctgtattatc tgattttact ttgacaaata tatcatgtac cccatatgtt
     1861 cctcttactt cctctacacc gactagtttt gcaatttcac ttatgatgtt ttcttctgag
     1921 cccagggtac agttcactaa aatatatgcg gtaggcattt cttacaactg caattattta
     1981 atattttagt gttttctatc cgcttccctt agcggttttt gtatctatat tccagcgagt
     2041 ggcgcttcgc caccggaagg tggagaaaat ccaattgatg ctttgaaatt acccgaattt
     2101 tta
//
LOCUS       DASQSJ010000190         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_368771, whole genome shotgun sequence.
ACCESSION   DASQSJ010000190 DASQSJ010000000
VERSION     DASQSJ010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368771"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            421..549
                     /locus_tag="VE223_03730"
     CDS             421..549
                     /locus_tag="VE223_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20734.1"
                     /translation="MYGKDGIKPITDIIEAPVVDESVKQYGLNAIKRIRIFTPFNP"
     gene            1148..1276
                     /locus_tag="VE223_03735"
     CDS             1148..1276
                     /locus_tag="VE223_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20735.1"
                     /translation="MQKRKNKNQGSEAKAKTEEDHAKGIPSSETLNKAKIKTRDAL"
     gene            1494..>2125
                     /locus_tag="VE223_03740"
     CDS             1494..>2125
                     /locus_tag="VE223_03740"
                     /inference="COORDINATES: protein motif:HMM:NF013922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20736.1"
                     /translation="MTNNCSVLLLELGLAAFDENNRLIVSKKFDNPIHSYRLLKSGEN
                     SLELKDLAERIRSYDYISVNDANMAFLLQQSGLNSHLMPQEEQNNIQNSKPAYIVQSN
                     LAMNEIEAMQALRNFAIEFSSVRVKEASEKLDLHIIQSVNALDELDKIINVIGARMRE
                     WYGLHFPELDNLIQSLTAYAEIVTKAGLRENITRQIIENAGMHDRKADII"
BASE COUNT          741 a          375 c          367 g          642 t
ORIGIN      
        1 tttaatgaat ccacaattaa gattttatag taaaagaaag tcatctgatg ctcctccatt
       61 tccctataat ataaaactga tgtgaattga aaatatctga gacatatata cacgatcatt
      121 catccctccc ctgttactag cgttctaatc ctctcttgtc attatattat tatattatat
      181 ggtttgccaa aatgtcattg agaaggagga tgataacaat gtcgatatgg atctacatca
      241 tacatgagta gttggtcctt tttataatga ttttaccatt tggtataata atctcccttt
      301 agtgaatggt atagatgagg aaaattatct gacaaagagc aagaaataga cagacttaaa
      361 gatgtaggca agaagtcgta tgatgagaat actgtaaaaa gcgccattga taaacttgct
      421 atgtacggaa aggatggaat aaaacctata actgatatca tcgaggcacc tgtcgtagat
      481 gaatcggtga aacaatatgg tctaaatgcg atcaagagaa taaggatatt tactcctttc
      541 aatccttaga aattacagca tttctagaga tcattaaaat tgaatatctg aactttaggg
      601 ttctttgaaa cgtcttgtca tattggcaaa ctttttatca tcataaggaa aggtgttttt
      661 caatgtatct gcaaattttt caataatctt catcaatgtt tccatcatcc tcacacaaaa
      721 gtaaatcaaa ccgctctgga atttggtttt gtagaaatat agtccatgag aataatgcca
      781 tgtcattcat catctgttgt gatccaaata gtcttcggga accagctcaa gaagcttggc
      841 attatcatta ccattaccgc tacctaccta tcacttctaa agaggctata cttggcaggt
      901 tctataactt tcgtcagtag tatatcaata ccatgatgcg cctgttccta tcaaccagca
      961 agaattgtct tttatcatgt cactagcaat aagttataat ttaactagat actattgacg
     1021 ctgtccaact tcttttatcg tttttaaaat ccttattcat aataagcgat atggataaca
     1081 gtttagaacc ttttaagtaa ggcctattaa atcaagatgt caatatgatc ttaactaatg
     1141 actgatattg caaaaaagaa agaataaaaa tcaaggttca gaagcaaaag ccaaaactga
     1201 agaagatcat gctaaaggga taccaagctc agaaaccctc aacaaggcca agataaaaac
     1261 aagagatgcc ctataggtta gtgtcctaag aagatagaga caattatatc ttctcttttc
     1321 ttaataatgc aaggctcagg caagtttctg tcactatgcg aagaacatta tccttattgg
     1381 ttcgaaatca aatcctcaac ggaagtgaac aatactacta caagtctttt tgttgattga
     1441 ttgatgagaa tgctatcttt tttaatggcc ttatacaagg aatgaattgg atcatgacta
     1501 ataattgttc tgttttactc ctggaattgg gacttgcagc ctttgatgaa aataatcgtt
     1561 taattgtttc aaagaaattt gataatccaa tacattccta tcgattgcta aaaagcggcg
     1621 aaaattctct cgaactcaag gatcttgctg aaaggatacg ctcttatgat tacatatcgg
     1681 taaacgatgc aaatatggca ttccttctac agcagtctgg cttgaatagc catttgatgc
     1741 cacaagaaga gcaaaacaac attcagaact caaaacctgc atatattgtg caatctaatc
     1801 tagcaatgaa cgaaattgag gccatgcagg cactgagaaa ttttgccatc gaattttcct
     1861 cagtaagggt aaaagaagct tccgaaaaac tagatcttca cataatacaa tcagttaatg
     1921 ctttggatga gcttgacaaa ataatcaacg ttataggagc cagaatgcgc gaatggtatg
     1981 gtttacactt tccagagctt gacaatttga tccaaagcct cacagcgtac gcagaaattg
     2041 tgacaaaggc tggtttaaga gaaaatatca ccagacagat aatagaaaat gccggtatgc
     2101 acgatagaaa agcggacatc ataat
//
LOCUS       DASQSJ010000191         3668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_102863, whole genome shotgun sequence.
ACCESSION   DASQSJ010000191 DASQSJ010000000
VERSION     DASQSJ010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3668
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102863"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1482)
                     /locus_tag="VE223_03745"
     CDS             complement(<1..1482)
                     /locus_tag="VE223_03745"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HZC20737.1"
                     /translation="MTKINKISSILIANRGEIALRVIRACKELGIKSISIYSDEDTRS
                     VHVKRSDEAYYIGKAPALESYLNMNKIIEVANTVGADAIHPGYGFLSENEGFAEMCER
                     NGIIFIGPTSEAMEITGDKMKCKAVMKKARVPTVPGSDGVIDDVEKAADIAHNAGYPV
                     LLKSAYGGGGRGIRFANDEKQLKQEFEMASAESKAAFGKAALFVEKYLQRIRHIEFQL
                     IRDAYKNSRHLFERECSVQRRHQKLIEMSPSPVIDQKTREKVGEIAVRAAAAVDYLNA
                     GTAEFLRDQEGNFYFIEINSRLQVEHPVTELVTGGIDLVKLQISIAQGEEISFSQQDL
                     KMHGCAIECRINAEDPFYDFTPSVGPVPNCNIPYGPGIRVDTYLYPGCNVSAYYDSLV
                     AKLIAWGRDFEEARIRTKNALDEFTIEGVNTTIPLYKTIMDEQNFINGDISTDYLERF
                     NILDKMRENAKEESQRVSSAAIAAILLQSEFIKKGMTGSSMTSK"
     gene            complement(1519..3060)
                     /locus_tag="VE223_03750"
     CDS             complement(1519..3060)
                     /locus_tag="VE223_03750"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HZC20738.1"
                     /translation="MIEDKITRLYNMKRLAEGGGGNDKIEAQHSKGKLTARERIDLLL
                     DQNTFLEIDKYVTHRSDDPGTKKYYGDGLVTGFGTVNGRQVFIYAYDFTILGGSLGEM
                     AAKKIVKIMDHAMKAGAPLIGILDSGGARIQEGVMSLDGYGDIFFRNTMASGVIPQIT
                     ASIGPCAGGAVYSPAMTDFVLMVENIGQMFVTGPEVVKEVLSQEVSFEELGGARTHAT
                     KSGVAHFIAKNEYDCMDKIKKLLSYLPQNNAEEPLLLESNDDPNRIDGNLVNILPENP
                     YQQYDMKEIIKSVVDSAEFLEVHELFAENIIVGFARMAGRAVGIVANQPLYLAGALDI
                     NSSNKAARFIRFCDAFNIPIITLVDTPGYLPGTDQEHNGIIRHGSKLLSAYCESTVPK
                     ITCIIGKAYGGAYIAMGSKNLRADINYAWPTAEIAVLGPEAAITIIHRRDLKQSPDAL
                     AVKKKLAKEYRDKFANPYIAAEKGTIDLVIDPMETRPMIIRALDALATKREARPWKKH
                     ENMNL"
     gene            complement(3144..3356)
                     /locus_tag="VE223_03755"
     CDS             complement(3144..3356)
                     /locus_tag="VE223_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20739.1"
                     /translation="MSSEYEQNVAKLLIEKNEKLQELKKNATSNKEAIERLETELQTL
                     ESLFDNYNLGLLYFRRARGGRMGLRE"
BASE COUNT          934 a          826 c          649 g         1259 t
ORIGIN      
        1 tttggatgtc atactgcttc cggtcatgcc tttcttaata aattcagatt gcagaaggat
       61 tgcagcaata gctgcagatg acactcgttg tgattcttct tttgcattct ctctcatctt
      121 atccaatatg ttaaaccttt ccagataatc tgtggaaatg tctccgttga taaaattttg
      181 ctcgtccatt attgtcttgt acaaaggaat tgtcgtgtta actccttcaa tcgtaaattc
      241 atcgagagca ttcttagtcc ttatccgtgc ttcttcaaaa tccctacccc atgcaattag
      301 ctttgcaact aaagaatcat aatatgctga cacattgcag cctggatata ggtatgtgtc
      361 gactctaatt cctgggccat atggaatgtt gcagtttggg actgggccga ctgacggtgt
      421 aaagtcatag aagggatctt cggcattaat tctgcactca atagcgcagc catgcatctt
      481 taggtcctgt tgactgaatg agatctcttc accctgagca atagatatct gcaattttac
      541 aagatcgatg ccaccagtca ctaattctgt aactggatgc tctacttgta acctagagtt
      601 gatctcgata aaataaaagt taccttcttg gtcgcgtaaa aactctgcag ttcctgcgtt
      661 aagataatca accgcggctg ccgctctaac tgctatttcg cccacttttt cccttgtttt
      721 ttgatcaatg accggcgatg gtgacatctc aataagcttt tgatgccttc tctgcactga
      781 gcattcacgt tcaaacaaat gtcttgaatt cttatatgca tctctgatca gttgaaattc
      841 gatatgtctg atcctttgaa gatatttttc aacaaaaagt gcagcttttc caaatgcagc
      901 ctttgattcg gcagatgcca tttcgaattc ttgttttagc tgtttttcat cattggcaaa
      961 tctgattcct ctgcctccgc cgccgtatgc agacttcaag agaacagggt atccagcatt
     1021 gtgagcgatg tcagcagcct tctcgacatc gtcaatgacg ccatcgctac caggaacagt
     1081 cggaactctt gccttcttca ttactgcctt gcatttcatt ttgtctccag tgatttccat
     1141 cgcctcgctt gtgggtccaa taaagataat accattcctt tcgcacatct ctgcaaaacc
     1201 ttcattttca gaaagaaaac catagcctgg atgaatcgca tctgccccta ccgtatttgc
     1261 gacttctata attttgttca tattgagata actttctagt gctggagcct tgccaatgta
     1321 ataggcttca tcggatctct tcacatgaac agatctggtg tcctcatctg aatatattga
     1381 aattgatttt atgcctagtt ctttgcatgc gcgtatgact ctgagagcta tttcacccct
     1441 attggcaatt aaaatactgg atatcttgtt gatttttgtc atcaagtctc acttttatat
     1501 tctatgttac catctgtgct ataagttcat attttcgtgt ttcttccagg gtctagcttc
     1561 cctcttagtt gccaaagcat caagagcacg tattatcata ggcctagttt ccatagggtc
     1621 aattaccaaa tcaatagtgc ctttttctgc tgctatatat ggattagcaa atttgtcacg
     1681 atattccttt gctagttttt tcttcactgc taaagcatct ggtgattgtt ttaaatctct
     1741 tctgtgaata attgtaattg ctgcttctgg tccaagtacc gctatttctg ctgtaggcca
     1801 ggcataatta atgtcagctc tcaggttctt gcttcccatg gcgatatacg caccaccata
     1861 tgctttacca ataatgcaag taatctttgg aactgttgat tcgcaatatg cagacaaaag
     1921 tttactacca tgccttataa ttccattatg ttcctgatca gttcctggaa gatatcctgg
     1981 tgtatctaca agagtaatga tcggaatatt aaatgcatcg caaaatctga tgaaacgcgc
     2041 ggctttgttt gaggaattta tatctaaagc accagccaga tatagaggtt gatttgctac
     2101 gatgcctact gctctaccag ccatccttgc aaagcctaca attatatttt ctgcaaacaa
     2161 ttcatgaacc tccaaaaatt cggcactatc cactactgat tttattatct ccttcatgtc
     2221 gtattgttgg tatgggtttt cgggaagaat gtttacaaga ttcccgtcaa ttctgtttgg
     2281 atcatcattg ctttctagga gcagaggctc ttctgcatta ttttgtggaa gataagacag
     2341 taatttcttg attttgtcca tacaatcata ttcattttta gctatgaagt gggccacgcc
     2401 tgatttagtt gcatgagttc tggcaccacc gagttcttca aaggatacct cttggcttag
     2461 aacctccttc accacctcag gaccggtgac gaacatttgg cctatatttt ctaccatcag
     2521 gacaaagtct gtcatcgccg gggaatatac cgctcccccc gcacaggggc caatacttgc
     2581 tgtaatttgt ggtattactc cggaggccat cgtatttctg aagaatatgt caccataacc
     2641 gtcaaggctc attacgcctt cttgtattct tgcgccccct gagtcaagaa taccaataag
     2701 tggcgccccg gctttcatgg cgtgatccat aattttaaca attttctttg ctgccatttc
     2761 acctaatgag ccaccaagga tcgtaaaatc atatgcataa atgaaaactt ggcggccatt
     2821 gactgttcca aatcccgtta cgagaccatc cccataatat ttcttcgtgc caggatcatc
     2881 gcttctgtgg gttacatact tgtcgatttc caggaaagta ttctgatcca aaagaagatc
     2941 tattctttct ctagctgtaa gcttgccttt agaatgctgt gcttcgattt tatcattccc
     3001 gccaccacct tcagccaatc tcttcatatt gtagaggcgc gtaatcttat cttcaatcat
     3061 ggctttgcat tttattcaat gtcaacttat ataaattgat tacaacggct ttctccatct
     3121 tctctagtgc ttagatgatt acattactct cttaatccca tccgtcctcc acgtgctcta
     3181 cgaaagtaga gaagtccaag gttgtaatta tcaaataatg attccaatgt ctgcaattca
     3241 gtctcaagcc tctcgattgc ttctttgttg gatgttgcat ttttctttaa ctcctgtagt
     3301 ttctcattct tttctatcaa caacttggcc acattctgtt catattcact tgacatttca
     3361 agaagaagat aatgattatt attcagattt taacttttgg tattattgat ttgccctaac
     3421 caagaatttt ttcattgact ttgcaggtgt catcatattg aagctcctgt attcagcata
     3481 tccctaatgc gcaggcttag gtatttttac tgtgaaacag aaattaaagg atctgactct
     3541 ttgaatgcta catctgcatt tgtgctcggc aagaaattag tttttgattg acccaaatta
     3601 tttctgccct gtccatcatc aggcttattt attttgcgat gtagaaaaaa tttggtgtat
     3661 ctttgcac
//
LOCUS       DASQSJ010000192         2242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_221721, whole genome shotgun sequence.
ACCESSION   DASQSJ010000192 DASQSJ010000000
VERSION     DASQSJ010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221721"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VE223_03760"
     CDS             <1..240
                     /locus_tag="VE223_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20740.1"
                     /translation="IFQEMPNVKLVVLYSPDGKVSIRRKAGTEIKCDWIAYKLNGGGH
                     SYAAAGVIKSNGGAVLTAQRVVLEFQKILKDMQTM"
     gene            complement(465..725)
                     /locus_tag="VE223_03765"
     CDS             complement(465..725)
                     /locus_tag="VE223_03765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20741.1"
                     /translation="MSQNIEGTENMPNREQQQQASQWAQMIGQIMEKLTGANMSTTIT
                     FDDLEIDVPKAQGPGGRDLGGAKWKINGKIVWATEGHKAGGV"
     gene            complement(962..1429)
                     /locus_tag="VE223_03770"
     CDS             complement(962..1429)
                     /locus_tag="VE223_03770"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HZC20742.1"
                     /translation="MNDKDVPTENEKKFSKILVAVDGSQASMDAADQAIEMARKYNSE
                     LIALHVILSDTTIFGTNPPQHIDEIKQQAQQYLDKIKQKLPNQHDDNKIQMRTELISS
                     ATAVAGIVGFAEKENVDLIVIGTRGRSGFKRLLLGSVASGVVNYAHCPVMVVK"
     gene            1630..1764
                     /locus_tag="VE223_03775"
     CDS             1630..1764
                     /locus_tag="VE223_03775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20743.1"
                     /translation="MPKFLDVHPLKGVDEETLRKAQKMPKDEFGITHDNMLYNREEDR
                     "
BASE COUNT          729 a          429 c          378 g          706 t
ORIGIN      
        1 atatttcaag aaatgcccaa tgtgaaactt gtggtgttat attctcctga tggaaaggta
       61 agtattagaa ggaaagctgg aacagagata aaatgcgatt ggattgccta caagctgaat
      121 ggtggaggtc atagttatgc cgcagctgga gttataaaga gtaatggagg agcagtatta
      181 acagcacaaa gagtagtact agaattccaa aagatcctaa aagatatgca aactatgtaa
      241 ttaaaagtct caaaaacgtg cacgattaat agtggttcgt ctcgtagccc cgacagataa
      301 gaccataggc cagaatgtgg ctcgcaatag aaaggcatac actatcgctc taatattgat
      361 gtttaacaat tggaagcaca caacagaaca atataataca aaagaatgtc gaaaattaga
      421 aataatttca ataatcaaag aaaatagtcg atgatcttct atttctatac tccgcctgct
      481 ttatgtccct cagtcgccca tactattttt ccattgattt tccacttggc accacccaaa
      541 tctctgcccc ctgggccttg tgcctttgga acatcaattt caagatcgtc aaaggtaatt
      601 gtagtagaca tattcgcacc tgtcagtttt tccataatct gccctatcat ttgggcccac
      661 tggcttgctt gctgttgttg ttctcgattt ggcatattct cagttccttc aatattttga
      721 ctcatattgt tgtaatacct aggacaactt tgaatttata gggtgcatta tatatttcgg
      781 ttcaatctcg ttatccataa gtgtaatgga ataacctttt tatcatttct tcttctcaaa
      841 gccggaaccc tcaatctcag gtgacaacta tgtagtcatc acaaggatat tgctttgatc
      901 caattagtaa ttagctatca tgataggctt tatgtcaaaa tagtatgttt aatgtaagaa
      961 ttcattttac taccattaca ggacaatgag cataatttac aacaccggat gcaacacttc
     1021 caagaagcaa tctcttaaac cctgatcttc ctctcgttcc tattacaatt aaatcaacat
     1081 tttccttttc cgcgaaaccc acaatcccag ctactgcggt agcagacgat attaattctg
     1141 ttctcatttg aattttatta tcgtcgtgct gattaggcag cttttgtttt attttatcaa
     1201 ggtactgttg ggcctgctgt tttatttcat ctatatgttg tggtggattt gtaccgaata
     1261 tagttgtatc tgacagaata acatgcaatg caattagctc tgaattgtat ttcctagcca
     1321 tttctatagc ttgatctgct gcatccattg atgcttgcga accatctact gcaacaagta
     1381 ttttagagaa cttcttttca ttctccgtag gcacatcttt atcattcata tgtatcttga
     1441 ctactggctg aagatggcaa gataaataaa cattacacaa aattgcttcc taaaattagc
     1501 gctttagaga aatcacatgt catattctca aggttgtcat gaatactgca gaagaagaac
     1561 aaccaagatt ttgtcagcta aattggaaaa gcatacatgt ttatataata aactcatggt
     1621 gctaatgcta tgccaaagtt ccttgatgtt catcctctga aaggtgttga tgaagaaact
     1681 ttaagaaaag cacaaaaaat gcctaaagat gaatttggaa ttacgcatga taatatgctt
     1741 tataatagag aagaagatag atgatattgt atcctagatg ctccaagtaa agaagcagtt
     1801 gaaaagcatc atcagaaagc tggtatcacc tgcgaatgga ttacagaagt aaaaacaaca
     1861 gcttaggaaa gatactaaac acttaagtat gctcaacgat gacaacaaca acagcttacc
     1921 aacgttcact atggtctacc ctaatgaagg tttttagcct aatacggcaa acaccgcatg
     1981 tgtgcttgca ttagaccaaa aagatgatgc atcagaaaac aatatagaca ttcttgcttt
     2041 taaaaacaat acttcaccta cattattgta gatccttaca ttaacaacat tgaatcacaa
     2101 gacatgatac tatgttggca ttagccccgg tagagataaa agctaacata actccatatc
     2161 tcaacttata ctgcttgatc ttcgatcttt ttaattattt ttaaaaccca ctctattgta
     2221 ttgattctta ttatatcgtt ac
//
LOCUS       DASQSJ010000193         4004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_409775, whole genome shotgun sequence.
ACCESSION   DASQSJ010000193 DASQSJ010000000
VERSION     DASQSJ010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409775"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VE223_03780"
     CDS             <1..454
                     /locus_tag="VE223_03780"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HZC20744.1"
                     /translation="DSSVLREELLKSGAQVVECSIYTYSHELKEEAAKVLKTMGFNYK
                     YPHQAKVVEFIEEITKGLIDAITFTSPPAVFEFFKIAEQYHLKEPLQQSLNQDIIVVA
                     VGPSTEKALADNRVKVDVMPKVYKMGPMIKALSDYVIQTKANKARIQS"
     gene            584..1300
                     /locus_tag="VE223_03785"
     CDS             584..1300
                     /locus_tag="VE223_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HZC20745.1"
                     /translation="MKYINLEEPHVTKPIVIAAMQDMGNVGNIVIDFINKSLNSDCFR
                     YVCPPFPNYVIDKGGYIEFQPERWEYRYGSDIIEFGGGTGQPQTNEELYELCQDVIDV
                     AKKHSAQLIYTVGAFHTTRTILQQPRTFVTTTSPELMEQVKRLGVEATPKSSFITGFN
                     GLILGFAKLNNIRGIGLYCEINDPNIPQYRAAKSILQLLERLTFMKFGQLHELDIMAD
                     AVDKEIDKMRAAGDSYFDNT"
     gene            complement(1525..2949)
                     /locus_tag="VE223_03790"
     CDS             complement(1525..2949)
                     /locus_tag="VE223_03790"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HZC20746.1"
                     /translation="MRRTIHVLAGQGPQEGSLYDHPYLSQIFLAGTLGVIGYPASFHP
                     SIGSVKSIEVLYLVPRVITGTLAIVDTFLLYNISRRCYGRNVAFIASVLFAIMPLTWL
                     IRRVWLEPIQLPFILASILFATYARSSTNDRINENKNSKKNLAVLFSGVFLGLAIFTK
                     IPAVAMVPLLGYVIYTSRRSLKSLGLYFIPIVLIPLIWPAYAIYNGQFDLWLNGVLWQ
                     MHRGTHTFFDSFIYDFNIDPLFMALSVAGVAFALIKKDILLLLWIIPFLVFLYMIGFV
                     SYWHIIPLLPAFCIAIARLIEFLSNITSRKKTYQNATMQILITTVGIFGIINTILLIT
                     PINLNSAYFEAAAFIVKYLHDDTVNKPVGGNSNDITIISNPFYSWIPQSIFHLDYNYI
                     DYYNGDISIKTRKVLLIVDPALLYILKNHEAAEQIQKNFNLYTANRIATFEGSMQNHK
                     VSIYLYESKYNAKKIKLASSINLS"
     gene            complement(3618..>4004)
                     /locus_tag="VE223_03795"
     CDS             complement(3618..>4004)
                     /locus_tag="VE223_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20747.1"
                     /translation="RDYTNIVAFYSPLGNLSDMIPQQLLLSRTHYSQNISLNDYSKLV
                     NDTLKQPGIQIVESKAITLTGGATAHRVVFIPPAGNAPFKPEIMLVWTAKGDNIYTLS
                     YNGDAAKYHIFLPTIEKMIDSFEITK"
BASE COUNT         1339 a          703 c          730 g         1232 t
ORIGIN      
        1 agattcatca gtattgagag aggagcttct taaatctgga gctcaagtcg tcgagtgttc
       61 aatatacaca tattcccacg agcttaaaga ggaggcagcc aaggtcctaa agacaatggg
      121 ctttaactat aaatacccac atcaagcaaa ggttgtagaa ttcattgaag aaattaccaa
      181 aggattgatt gatgcaataa catttactag ccctcctgca gtattcgaat tctttaagat
      241 tgcagaacaa tatcatctaa aggaaccgct gcaacaatca ctaaatcaag acataatcgt
      301 cgttgcggta ggaccctcta cagagaaagc cttggcagat aacagggtca aagtagatgt
      361 tatgcctaaa gtctacaaga tgggaccaat gataaaggcc ttaagcgatt acgttattca
      421 aaccaaagcc aacaaagcaa ggatacaaag ttgaagtcaa atttcgcaat ttatgttttc
      481 gtacaacatt agcttacagc agtggcgata ttgggtggct attaagaaac atttcaaatt
      541 aagggcagga gcctttttta tacttaatgt atattcatat cctatgaagt acatcaacct
      601 cgaagagcct cacgttacaa agccaatagt catcgctgca atgcaagaca tgggtaatgt
      661 gggaaatatt gttattgatt ttataaataa gagtttaaat tcggattgct ttcgttatgt
      721 ctgtcctcct tttcccaatt atgttataga taaaggaggt tatattgaat ttcagccaga
      781 aagatgggaa tataggtatg gaagcgatat aattgaattt ggaggaggta caggtcaacc
      841 tcaaaccaat gaagaacttt atgaactgtg ccaggatgtc attgatgtcg ctaaaaaaca
      901 ttcagctcaa ttgatctaca cagtaggtgc atttcatact acacgcacaa tacttcagca
      961 accaagaacc ttcgtcacga ctacttctcc agaattaatg gaacaagtaa agagacttgg
     1021 cgtagaagca acccccaagt catcctttat cacaggcttc aacggcctga ttttgggttt
     1081 tgcaaaatta aataatataa gaggcatagg actctattgc gaaattaacg atccgaatat
     1141 acctcaatat agagcagcca agagtatctt gcagttatta gagagattga ccttcatgaa
     1201 atttggacaa ttacatgagc tagatataat ggctgatgct gtagataaag aaatagacaa
     1261 aatgagggca gcaggcgatt cttactttga caacacataa tgttggatta tgacgatcca
     1321 atattattac agttaaatta agcagtacat tctgctctga tctgatatcc atcctaaaga
     1381 ttcagattcc ggacttcttc tttatagtgt gttaatggct ttggatagcc atacaccata
     1441 taaagcgaag attatttaca atcttcataa tagatgtaac ttcgatacct cgttcataaa
     1501 ttgtcagggc gaaagttatc tgttttaaga caaattaatg cttgatgcaa gtttaatttt
     1561 tttggcattg tattttgatt catagaggta aattgatact ttgtgatttt gcatacttcc
     1621 ttcgaaagtg gcaattctgt ttgcggtgta caaattaaag ttcttttgga tttgttctgc
     1681 ggcttcatga tttttcaata tatatagcag tgcaggatct actatcaaaa gaaccttgcg
     1741 ggttttgatg gatatatcgc cattataata atctatataa ttataatcca aatggaatat
     1801 agattgcggt atccacgaat agaagggatt tgagataatg gttatatcat tactgtttcc
     1861 accaacaggt ttgttaacag tgtcatcatg taggtacttt acaataaaag ctgctgcttc
     1921 aaagtaagca gaattaagat ttattggagt tatgagaaga attgtattta ttatcccaaa
     1981 aattcctaca gttgtaatta gaatttgcat cgtcgcattc tgataagtct tttttctgct
     2041 ggttatattt gacagaaatt ctatcaacct agcgattgca atacaaaatg cagggagtaa
     2101 aggaattatg tgccagtaag aaacaaatcc tatcatgtat aaaaatacga ggaaaggaat
     2161 gatccataat aagagaagaa tatctttttt tatcaatgca aaggcgacac cagcaacact
     2221 caaagccata aataatgggt cgatattaaa atcatagata aaggaatcaa agaaagtatg
     2281 agtgcctcta tgcatctgcc acaagacgcc gtttaaccaa aggtcaaatt ggccattata
     2341 gattgcatag gcaggccaaa taagaggtat caatactata ggtatgaaat acaatccaag
     2401 agatttcaaa cttcttctac ttgtgtagat aacgtatcca agtagcggaa ccatggcaac
     2461 tgccggaatc tttgtaaata ttgctaaacc taagaaaaca cctgagaaca aaactgctaa
     2521 attttttttg ctatttttat tttcatttat tctgtcattt gtcgagcttc ttgcatacgt
     2581 tgcgaataat atagaagcca aaataaaagg caattgtata ggttctaacc aaactcttct
     2641 aataagccaa gttagtggca ttattgcaaa tagaacagaa gcgataaacg ctacgtttct
     2701 accatagcaa cgtctcgata tattatacaa tagaaaggta tcgactattg caagggttcc
     2761 tgtaatcact cttggaacaa gataaagcac ttcaattgat tttacactcc caatggatgg
     2821 gtgaaatgag gctggatatc caattactcc taacgtacct gctaaaaata tttgtgaaag
     2881 ataagggtga tcgtaaagag atccttcctg aggcccttga cctgctaata catgaatagt
     2941 cctccgcata tatatgccct catcattaga cgggccggga ggaaatccta caggattata
     3001 caaatgtgta aatgcggcca atacgcctat aaaggagagt aagataaaat gtcgtcgaga
     3061 gtaaaaattc caactcttca agataatttg agtccacgag ttatccgtaa tgagatgcaa
     3121 tccttcttaa atattgctaa tacctctccc aaaaggagca tggtttgcca tcagtaaaat
     3181 attcaagtca atcatgaatt ttggatatta gcttcagcct atgaacaaaa aatcaaatta
     3241 tgcgtaacag accaccacca cggcgtactg ttcagcattg tgacatatcc aaccaaggta
     3301 cattttggct tcaactgtgt tcattttcca aagtaatgct cctccaatcc ttgctgattt
     3361 tctaggctgc caaaaccggc gaaatcctct gagcctactt cataaatgtt cgacattaaa
     3421 gaaaatactt ataatatctt tgagggaaag gtctcaagag aatcggtatt gttacattgt
     3481 cgaaataatt aataagtacg ggttgcactt ttatttatct tctaaatcat atatttattc
     3541 ctattagatc gatatttatt aaattccttt tcagtaattc attttgtaat ctagtcatga
     3601 tctctcgttc tcatctatta ctttgttatt tcaaaggaat ctatcatctt ttctatagtt
     3661 ggcaagaaaa tatgatattt tgctgcatcg ccattataag aaagagtata tatattatca
     3721 cccttcgctg tccatactaa cattatttct ggtttaaatg gtgcattgcc agcaggaggt
     3781 ataaatacaa ctctatgtgc tgtcgcacct ccagtaagtg taatggcttt ggactctaca
     3841 atctgtattc ctggttgttt tagtgtatca ttaactagct tactataatc atttagtgat
     3901 atattttgag aataatgagt tcttgacagt aagagctgct gggggatcat atctgaaaga
     3961 tttcctaacg gtgagtagaa tgcaacaata ttagtataat ctct
//
LOCUS       DASQSJ010000194         5852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_222124, whole genome shotgun sequence.
ACCESSION   DASQSJ010000194 DASQSJ010000000
VERSION     DASQSJ010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5852
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222124"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(167..871)
                     /locus_tag="VE223_03800"
     CDS             complement(167..871)
                     /locus_tag="VE223_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20748.1"
                     /translation="MLTDEKSIVVTVSLIMVLSVAITLFLPTAYAMMQSKVTSRNIVS
                     ASNSSIPLIQQTGKGKNSYDNSNDITAGNILHRGIISSEPGQPQQLKVQRTIILPHRQ
                     DGKDYTGILTFTATRPVEVLFGHRLYIDNKTLSILDLKKFGNLFLVNPIHPNAGYVLS
                     APTVIKPNYNGSSPPYYSSSLPFVASSVVLRTLGGIPFITVYEVNAHLGQPQEINNVI
                     TAKNSNSNSNTTNATK"
     gene            1597..2919
                     /locus_tag="VE223_03805"
     CDS             1597..2919
                     /locus_tag="VE223_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HZC20749.1"
                     /translation="MFISQILPITSSTPPPLSFSPSFSTDFLVQDFAVIMIVAAIMLV
                     ITHKLKQPMVIGYIVAGMIIGPYTPPFRLIHNVNSLNSFAELGIIMLLFVIGTEFPIA
                     KLRSIGRISVIVALPESIGTLLIVFFVSHSLLGFSFFDSLFLALAMSITSTVVTIRIL
                     EELDLIKDKSTVLILGISIIEDIIAITALGIFQSIATNGGQVSIPHVSISIGIVVVFI
                     GSILAVGSRYVPAILDKVARTDDYALILIVILGLAFGLSFAAKELGLSVATGAFLAGV
                     LVAESKSANVARVITIPLRDMFAAIFFISIGALIDLSHIPLLIIPAILLVLTSFASKF
                     LIISAILVRAGRYGGGGITALRTGLGMASARGELSLVVAKAGQDIGAITSSIFPILGL
                     VTIVTTFMTPYIIKFGSRIGISSSLKSQSSASPSPEKIKRKFRFGFRL"
     gene            complement(2955..3347)
                     /locus_tag="VE223_03810"
     CDS             complement(2955..3347)
                     /locus_tag="VE223_03810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20750.1"
                     /translation="MEDNNNSEHSSGDESNTNIKYKHENKFNKCQTLDEGTFAFMHWL
                     NSEDKQSLSSTDNPIILLKFVNDDHTILYDTRLCKEIDVEISKGVPFCRYCNEDDCAH
                     VGFAVCIEQLCGHRRTRKEETAEDILQV"
     gene            3582..4853
                     /locus_tag="VE223_03815"
     CDS             3582..4853
                     /locus_tag="VE223_03815"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HZC20751.1"
                     /translation="MQKSNIFSRAGVNITFLVILFTSLITVQTQVMAQTSTTSSPVIT
                     AGTPSHTSFHSPINIIFRQVQNSVVRITSKIPISINNLSNPQTQNSTTLGSGFIYDKV
                     EYCGSEQQRPFCVITGHVITNNHVVGDAKIVDVTFSDGNKYTARVIGADIYSDIAVLQ
                     IMQNITQPILKPLVIGNSSKLEVGDEVVTISNPFGLDNTLTTGIISAMGRVLSPLAES
                     GGFSLPNIIQTDVPLASGSSGGPLLNMQGQVVGMDTAGISAILGGGIAFAIPSNTLER
                     IVPALIKNGTYIHPYLGLKGGTITSDLAQNITGIPAANFKGIYVDTITKNGPADKAGV
                     HGSTIDQYSKKHVGDIIVAIDGHPVVRIDDLISYIDQHKSVGDNITLTVYRNGHTLDL
                     KATLTARPSLIPFLPIKSAPTQPPIPPPPHP"
     gene            complement(4952..>5852)
                     /locus_tag="VE223_03820"
     CDS             complement(4952..>5852)
                     /locus_tag="VE223_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HZC20752.1"
                     /translation="NYRAMKSEKSVGRALLRLEKEGIISRDEVFICTKNGYITNDGDY
                     PGIDVMEYMQKMFISTDIIKAHDISSGYNVLNPNYTERCIEKSLMNMHIETIDLVYIH
                     NSFESWHEDVSREEFMQMLARVFEVYEKYRSNTKIRYYGMATWTCFRVSQDNKEYLSL
                     EQVVKLAENIGGRQHGFRFIQLPYNLAYSEALLLKNQIVGSERNLTILEAANRLNIKV
                     FTSIPLFQSRLLRAQIPDYMGLTDQVAKLVQVIRSSPSIIAPLIGHKKPEHVEQNLMV
                     ANIPPLSDIEFKKAVEVLLKGNS"
BASE COUNT         1804 a         1095 c          991 g         1962 t
ORIGIN      
        1 gtattattat attgtccttg gatttaagtc atgttgactt aaatttttct tctattgcca
       61 tgttaattat gaatgcttat ttatatggtt gtattaagtt gagatgactt ttcagcttgg
      121 gagagtgcct tgatgctcaa atactgtggc ggatagttgt aattgctcat tttgtagcat
      181 tggttgtatt tgaattcgaa tttgaattct tggcggttat aacattgttg atttcctggg
      241 gttgacctaa atgagcattt acttcataaa ctgtaataaa tggtattcca cctaatgttc
      301 taagtacaac tgagcttgct acgaatggaa gggaggagga ataatatggc ggcgaagatc
      361 cattataatt tggcttaatg acagttggtg ctgataatac atatccagca tttgggtgta
      421 taggatttac aaggaagaga tttccaaatt ttttcaaatc tagaattgat agggtcttgt
      481 tatcaatata aagtctgtga ccaaataata cttccacagg cctggttgct gtaaatgtca
      541 aaataccagt ataatctttt ccatcttgcc tgtgtggtaa aattattgtt ctttgaactt
      601 tcagttgttg aggctgtcca ggttcagaag aaattattcc tcgatgtagt atattcccag
      661 cagtaatatc attactattg tcgtagctat tcttaccttt accagtttgt tgaattaagg
      721 gtatggaaga attgcttgca ctaacaatat tcctactagt aactttagat tgcatcatgg
      781 catatgctgt tggaagaaac agcgttattg ctactgataa caccataatc aaactaactg
      841 ttacaactat tgatttttca tctgtaagca tttttcatca ttatataaaa ttagtctata
      901 taaggtgtat tattattgta acttgctgct agctggcgac gaaagtggat attttaagtg
      961 tctttatatt taataactgt catcccccgt acgtataatg atatattgct gcagtcattc
     1021 ttcaattttg tcttgaatat gctttctagc acctgatagc agctataatt ctaagcaatc
     1081 agtattatat agaatcttca aatggtctat tacaagtata tagattataa gcaatctcaa
     1141 taagctgttg ataaacgaga aaagatcaac tattatttgc aagagtatat tgtaaccacg
     1201 aattaaggca tacaagttac aatagatttt attctttctc tttcaaaaac catagacaat
     1261 atacacttta ctcatttaag cacaaagaga tagaaaggta tgctcatttc ataagtttaa
     1321 gtaagaaaga agggaagcca tgtacttttg aaatgaatga aacaagaagc aacatctcca
     1381 aggacatcaa tagcaacaac agatatgatc agttgtgtgt gtcagactta atttaataca
     1441 gaacagtatt gtttaggttc acagttggaa atctaaacta aacctacgac agtaaaacat
     1501 cctactattt cacaaattct taattattat caaatgttac actatggcat gatgatgatg
     1561 atgacaatgt tgtggcaatt atatactcca ttattcttgt ttattagtca gattctcccc
     1621 attacttcat ctacaccacc accactttct ttttctccta gtttctcaac tgatttccta
     1681 gtccaagatt ttgcagtaat aatgatagtt gctgctataa tgctggttat cactcataaa
     1741 ttgaaacaac ctatggttat cggctacata gttgcaggca tgataattgg cccctatacg
     1801 ccaccattta gattaataca taatgttaat tcattgaaca gctttgcaga actaggaatt
     1861 ataatgctac tttttgtcat tggcacagaa ttccctattg ccaagcttag atcaataggt
     1921 agaatttctg tcattgtggc attacctgag tcaataggaa ctttattgat cgtatttttt
     1981 gtctcacatt cactattagg cttttcattt tttgattcac tattcttggc attagccatg
     2041 tctattacaa gtacagttgt aactatcaga atacttgaag agcttgattt gattaaggat
     2101 aaatcaaccg ttctgatatt agggatatct attatagaag atattatagc tattactgct
     2161 cttggcatct ttcaatcaat agccactaat ggaggtcaag tgtcgattcc acatgtttct
     2221 atctctatag gcatagttgt tgtatttatc ggaagtatat tagctgtggg ttcaaggtat
     2281 gtgccagcaa tactggataa agttgccaga acagatgatt atgcgctaat tctaattgtg
     2341 atccttggat tggcatttgg tttatcattt gcagccaaag aattgggtct atctgttgct
     2401 actggtgcat ttttagcagg agtattagtt gctgaatcaa agagtgctaa tgtagccaga
     2461 gttattacta tcccgctaag agatatgttt gctgcaatat tttttatatc aataggggca
     2521 ttaattgact tgtcccatat tcctttgctt attattcctg caatattact tgttttaaca
     2581 tcctttgcat caaagttcct gataattagt gcaatattgg ttagagctgg acgatatggt
     2641 ggcggcggta ttacagcatt aaggacagga ttgggaatgg catcagcaag aggagaacta
     2701 tctttagtcg ttgctaaagc tggtcaagac ataggcgcca taacttcctc aatctttcca
     2761 atattgggac ttgtaacaat agtaacaacc ttcatgacgc catacataat caaatttgga
     2821 agcaggatag gaatttcgtc atcattaaaa tcccaatcct ctgcctctcc ctctcctgaa
     2881 aaaatcaaga gaaagtttag atttggtttt cggctatagt agtaatactg cattaaagtt
     2941 caaatttatg ttgcctaaac ttgtaaaata tcctctgctg tttcttcttt cctagttcgg
     3001 cgatgaccac acaactgctc tatgcataca gcaaatccta catgagcaca gtcatcttcg
     3061 ttgcaatacc tacaaaacgg aacgcctttg cttatttcaa catctatttc tttacaaagt
     3121 cttgtatcgt atagtatagt atgatcatca ttcacaaatt tcaacaaaat tatggggtta
     3181 tccgtagagg acaatgattg tttgtcttcc gagttcagcc aatgcataaa tgcaaatgtg
     3241 ccttcgtcta gggtctggca tttgttgaac ttgttctcat gcttgtattt tatattagta
     3301 ttcgattcat caccgcttga gtgttcgctg ttgttattgt cttccataag gattggcgct
     3361 ttgaattcta ctgaagttat agaaaaataa caatattaat gttattaata caccttaaat
     3421 cataaccaca tataaacaca tcattagagt ctaatctatc tgttactaaa accactactg
     3481 catctcatct gtaacaatgt gcattcgata gcttcgtatt tagcactcta ataataataa
     3541 taactcctat aagagaacca atctatacat atatcaccac aatgcaaaaa tcaaacatat
     3601 tttctagagc tggagtaaat atcacttttt tggtgatatt atttacatca ttaataactg
     3661 ttcaaactca agttatggcg cagacgagta ctacctcttc tcctgtcatt actgctggga
     3721 caccatcaca tacttctttc cactccccta ttaatattat attcagacag gtgcagaact
     3781 ctgttgtacg gataacaagc aagatcccaa tatccattaa caatctatca aacccccaaa
     3841 cacaaaattc tactacatta ggttcaggat ttatctatga caaggtagaa tattgtggct
     3901 cagagcagca gagaccattc tgtgtcataa caggacatgt aattactaac aatcatgtag
     3961 taggtgatgc caaaatagta gatgtaacat tttcagatgg aaataaatat acagcaagag
     4021 tgataggagc tgacatctac agcgatattg cagtactaca aattatgcaa aacattactc
     4081 aacctattct caagccactt gtaattggaa attcttccaa actagaggta ggagatgaag
     4141 tagtcaccat aagtaatccg tttggactag acaataccct gactacaggt atcataagtg
     4201 caatgggacg agtgttatca ccactagctg aatcaggtgg gttttcttta ccaaacatta
     4261 ttcagaccga cgtaccactt gcttctggaa gctctggcgg acctttacta aatatgcaag
     4321 gtcaggttgt tggaatggat acagctggaa tttcagctat cttgggcggt ggcatagcat
     4381 ttgcaattcc ttctaacaca ctagaacgga ttgtcccagc actaattaaa aatggcacct
     4441 acatacatcc ttatcttgga cttaaaggtg gcactataac ttcggatcta gcacagaaca
     4501 tcacaggtat accggcagca aatttcaaag gcatatacgt agatacaatt acaaaaaatg
     4561 gccctgctga taaagcagga gtacatggaa gcactataga ccaatactca aagaaacatg
     4621 ttggggatat aatagtagct attgatggac atcctgtagt gaggatagat gatttgatct
     4681 catatataga ccagcataaa tctgttggtg acaatataac tttgacagta tatagaaatg
     4741 gtcatactct agacctaaaa gcaaccctta ctgccaggcc atctctaatt ccatttctcc
     4801 ctatcaaatc ggctcctaca caaccaccga taccgccacc accacatcct taacatcctt
     4861 atttgaatag cacatggcac gccaaatgca aatgtagagc cacttattgt ttaacctttt
     4921 actctaccat gcctcctcat gtcagattaa actatgaatt tcctttcaat aaaacctcta
     4981 ctgccttttt aaactctatg tcgctaagtg gtggaatgtt tgcaaccatg aggttttgtt
     5041 caacatgttc tggtttctta tgtcctataa gtggggcaat gattgaagga ctcgaacgta
     5101 ttacctgaac caattttgct acctgatcgg ttaatcccat gtaatctgga atttgagctc
     5161 taagtaatct actttgaaac aatgggatgc tagtgaatac ttttatattc aatctattgg
     5221 cagcttctag tatagtcaaa tttctttctg aacctacaat ttgattttta agtaataagg
     5281 cttcgctata agctaaatta tacggtagtt gaataaatct aaatccgtgc tgtcttccac
     5341 ctatattttc agcgagttta actacctgct ctaaagataa atattcttta ttatcctgtg
     5401 atactctaaa acaagtccat gttgccatcc cataatagcg gattttggta tttgatctgt
     5461 atttttcgta tacttcaaag accctggcaa gcatttgcat aaattcctct ctgctaacat
     5521 cctcgtgcca actttcaaat gaattatgaa tatacactag atctatagtc tctatatgca
     5581 tattcattaa tgacttttca atacaccttt cagtgtagtt aggattgaga acattatagc
     5641 cagaacttat gtcatgcgcc ttaattatgt cagttgaaat gaacattttt tgcatatatt
     5701 ccattacatc gatgcctgga taatcgccat cgtttgtaat gtatccgttc ttggtgcaaa
     5761 taaacacttc atcccttgat ataataccct ccttttccaa acgtaacaat gctcggccta
     5821 cacttttctc tgacttcata gcacggtaat ta
//
LOCUS       DASQSJ010000195         3968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_461443, whole genome shotgun sequence.
ACCESSION   DASQSJ010000195 DASQSJ010000000
VERSION     DASQSJ010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461443"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            254..1012
                     /locus_tag="VE223_03825"
     CDS             254..1012
                     /locus_tag="VE223_03825"
                     /inference="COORDINATES: protein motif:HMM:NF015018.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HZC20753.1"
                     /translation="MDAVYITGTAGSGKSLLASRLLQWYKDTKSFPIILNLDPGAVNL
                     PYKPDVDVRDYIDMQTLMERYDLGPNGSLVMASDLIATRLDEIQNEVDSLNPDYVIID
                     TPGQIELFAFRASGPYFISNFQSDNRVTLFIFDGVLVSSPLNYVSVSLLASSIKLRLK
                     SSQVNVITKSDLINEKLKYILRWSSSNVALESALSDEKDAESSLLSKDLLRAISKGGF
                     TQSPVAISSVTMNGMVNLAATLSRILNLGEEAKD"
     gene            1021..1971
                     /locus_tag="VE223_03830"
     CDS             1021..1971
                     /locus_tag="VE223_03830"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006566 - threonine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HZC20754.1"
                     /translation="MPTSCTAVAPSSTANLGPGYDVFGLGLSALEDTVRITKASGRSR
                     RITIRLSGEKSISIPSNTESNSAGLVIKKMSEDFDLRYDLDVRIVKRVPAGFGMGSSA
                     ASAAAAAVAFDRLFNLKVRKSKLIEYAAEGEIASAGTKHYDNVSGAILGGFVIVRTIP
                     ELEFIKIIPPEDLVLVIAVPTVKVSCRKTEVARSVLPKEVPLNNVVRNVSNASTIVAG
                     FILKDTKMIARGVDDVIVEPARKHLIPGFDAVKSKALKSGALAVTISGAGPSMISFLN
                     TRKNGKLVAHSMAAGFKESKIKSRTFVCHPSNGARVVSVK"
     gene            complement(2004..2852)
                     /locus_tag="VE223_03835"
     CDS             complement(2004..2852)
                     /locus_tag="VE223_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HZC20755.1"
                     /translation="MKYIQLEPRGDIAIIKINRPEALNAVNTDVIAELSRTIDIVGAD
                     DGTKAIIITGVGERSFCAGADIAYMVNIDPIKAERYASSAQAVLNKIERLEKPVIAAV
                     NGFALGGGCELALACDIRIASGNAKIGQPEVTIGIPPGWGGTQRLARIVGPAKAKELI
                     FTGKMITAEEAAQIGLVNKVVNLESEDQSQSQTSDEISNKKEKANEEARSLNKKLIEE
                     CISLANQIAKNSFIAVKVSKMLINKSMDIDIDSGLRLEIYGWAMCFAHEDRQKMMSAF
                     LSKSKK"
     gene            complement(3583..3753)
                     /locus_tag="VE223_03840"
     CDS             complement(3583..3753)
                     /locus_tag="VE223_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20756.1"
                     /translation="MTTSIQGDTMADGMFMFTTMTGTMAALTALLFVARWRRGRSKSK
                     TEISNNEMPSSS"
BASE COUNT         1235 a          693 c          743 g         1297 t
ORIGIN      
        1 aggatctgta gatgaccaca gaggagttga ccttcgcaac ggtatggccg gagcttagga
       61 gactacactt ctttttcatt ataatttttc ttatacgggt tactactaat taagcgaatt
      121 aaaaaagatc ttcgtataca atgcaagtag gatttctgtt ataatacatg tgcaatatga
      181 ataaaacatt tatgaatttt ttactaaaaa gtaaatatac aaacaggtga atagattcat
      241 gttgcagcta tagatggatg ctgtatatat tactggtact gcaggctctg gtaaatcact
      301 ccttgcgtct agattactcc aatggtataa agatactaaa tcatttccaa ttattctcaa
      361 cttagatccg ggagctgtaa atttaccata taagccagat gtagatgttc gggattatat
      421 tgacatgcaa actctgatgg agagatacga tcttggacca aatggctcat tagtgatggc
      481 aagtgatctg attgcaacaa gactagatga gatccagaat gaagtggata gtttgaatcc
      541 agattatgtc ataatagata ctccaggaca gatcgagtta tttgctttca gagcaagtgg
      601 tccatatttt atatcgaatt ttcagtcaga caatagggta accttgttta tatttgatgg
      661 tgtcttagta tcatcaccac tcaactatgt gtctgtgtct ctcttagcat catcaattaa
      721 acttagattg aagtcatccc aagtcaacgt cattactaaa agtgatctga ttaacgagaa
      781 attaaaatac atcttaagat ggtctagttc taatgttgca ttggagtctg ctctaagtga
      841 tgaaaaagat gctgaatctt ctcttttgag taaggattta ctaagggcta taagtaaagg
      901 tggttttaca cagagcccgg tcgctatttc tagtgtaact atgaatggca tggttaatct
      961 agcggccaca ttgtctagaa tccttaacct aggagaggaa gccaaagatt gaaaataaac
     1021 atgccaacat catgtaccgc tgtcgcacca tcatctactg ctaatttagg tcccggttat
     1081 gatgtatttg gccttggcct tagcgcatta gaagacacag tacggataac taaggcgtca
     1141 ggaagatcaa ggcgaataac tattagattg tctggagaaa aaagcatctc aataccatct
     1201 aacacagaat ccaattctgc tggtctcgta attaaaaaaa tgtcagaaga ttttgatcta
     1261 cgttatgatc ttgatgtccg cattgtaaaa agagtgcccg cgggatttgg gatgggtagc
     1321 agtgctgcat cagcagcagc agcagcagtc gcctttgata gactatttaa tcttaaagtc
     1381 cggaaatcaa aactgattga atatgcggct gagggtgaga ttgcgagtgc agggacaaaa
     1441 cactatgata atgtctcggg agcaatactt ggaggctttg ttattgttag aactattcca
     1501 gagcttgaat ttattaaaat aattcctcct gaagatctgg ttcttgtcat cgcagttcca
     1561 acagtaaaag tgtcatgcag aaagacagaa gttgcaagaa gtgtattacc caaagaggtt
     1621 cccttgaata atgtcgttcg taacgtatct aacgccagca caattgttgc agggtttatt
     1681 ttaaaagaca caaaaatgat tgcaaggggt gtggatgacg taattgtgga gcctgcaagg
     1741 aagcatttga tacctggctt tgatgctgta aaaagcaaag ccttgaaatc tggagctctt
     1801 gcagtaacaa tcagtggagc aggaccatct atgatttctt ttttgaatac taggaaaaat
     1861 ggaaagctag ttgctcattc aatggccgcg ggtttcaaag aatcaaaaat aaaaagtaga
     1921 acctttgtgt gccatccaag caacggagct agggtagtat ctgtaaagta gaagtaagat
     1981 atattgtgtt actactatta cttttatttt ttgcttttgc ttaagaaggc agacatcatt
     2041 ttctgtctgt cttcgtgggc aaaacacatt gcccatccat aaatttctag tctgagtcca
     2101 gaatcaatat ctatatccat tgatttattt atcaacattt tgctgacttt aaccgctata
     2161 aagctattct ttgcaatttg gttcgcaaga gaaatgcatt cttctattag ttttttgtta
     2221 agacttctag cttcttcatt agctttttct tttttattag atatctcgtc agacgtttgt
     2281 gattgtgact ggtcttcgga ttctaaatta actaccttat taacaagtcc aatttgtgct
     2341 gcctcttctg ctgttatcat tttccccgta aagataagtt cctttgcctt tgccggccca
     2401 acaattctag ctaatcgttg tgtacctccc catccaggtg ggatgcctat tgtaacttca
     2461 ggctggccaa ttttggcatt gccagaggct attcggatat cacaggccaa agccagttca
     2521 caaccaccgc ctaatgcaaa accattcact gcagcaatga ctggtttttc caacctctcg
     2581 atcttgttta aaacagcctg agcagaagac gcatatcttt cagcctttat tggatctata
     2641 ttaaccatat atgctatgtc tgcgcccgca caaaaagatc tttctccgac acccgtgata
     2701 attatagctt tagtcccatc atcggctcca acaatatcaa tagtacgaga taattcagcg
     2761 ataacatctg tgttgacagc attcagtgct tcaggtctgt ttatcttgat gattgcaata
     2821 tcacctcgtg gttcaagctg tatgtatttc atagtagaca tagagaaaat gcaactacgt
     2881 cttgcaatta aatcttatcc atagaactcg gctcgtttta tttctatagt aattgtaatg
     2941 gcgatactaa tctaggtaca gcccatttga tatcatctta tactatatat taacatcgaa
     3001 tccataacca aataagaaat ttgggacgta tttatcgtcc actgtcaaat gaccattcaa
     3061 gcatttgagc atgatgacaa atagttttgt ctgggcataa attgggtgat agggatgtcg
     3121 atgtagtaat gttttgggtt agttcttaaa atttaattac taatgaaatg atctaaatga
     3181 tgattaccta ttactatgaa aaagagggag ttgattatac aggcttctta tattatcata
     3241 aaattagttt cgaaaacaat tagatattgg tatgatattt ttcatttaaa taaaaatcat
     3301 gatgatcttt aaatctgtca tatctattca aacatacata cttaatcaat ttaataccgc
     3361 agtataaatt tattttctaa aattatatgc tgatttgaca agacatacat ctacaagata
     3421 tgctgatcat gttgaaaaga caattataaa gtttatagca ggattttcgt catatactgg
     3481 actcaagttt gtataaaaat ccattgattg catacatata atatattata tatctcctat
     3541 atgatctatt ctttttaaga aattaatatt cataggtgaa cttcaggaag atgatggcat
     3601 ctcattgttg ctaatttcag ttttagactt tgatctacct ctacgccatc ttgctacaaa
     3661 caataatgct gttaatgctg ccatggtacc tgtcatagta gtgaacatga acattccatc
     3721 agccatggta tctccctgta tactagttgt caatattaaa catatcgcta atagaaaata
     3781 attgtcactc tgacttagag tattaatttg aataggtttt ggttagataa ttcgtttatt
     3841 tgaatgattt aaaagtactg ctacacatgc tgcagagatg ttcctagaat agtttatacg
     3901 atttgaaccc atgggtatta cttgtatata ttcatggatg taattaatgc ttagtgtagt
     3961 agcagaga
//
LOCUS       DASQSJ010000196         3833 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_222691, whole genome shotgun sequence.
ACCESSION   DASQSJ010000196 DASQSJ010000000
VERSION     DASQSJ010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3833
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222691"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(301..1038)
                     /locus_tag="VE223_03845"
     CDS             complement(301..1038)
                     /locus_tag="VE223_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HZC20757.1"
                     /translation="MKTFIFIFITIFSGAIAGALLGLINQSIVEPFIDKAIGIETQRQ
                     VNAGKIIDTIQQSQYRTWQKEGEIVAAIIMGVSLASLFGVVFAYTRSSLPSSDNEKKA
                     VILAGLMFVVLFLVPALKYPANPPAVGNPATIYYRESLFIGFIAVSGFSTLGLALLYR
                     KLGSNQSKMRRISIPLIYVAIIVGAYVIFPPNPDKITIPMDLIVSFRIASIFTIGVFW
                     GLVGIIFGAFWDKFKPHETSKEIASTV"
     gene            complement(1074..1307)
                     /locus_tag="VE223_03850"
     CDS             complement(1074..1307)
                     /locus_tag="VE223_03850"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB-domain containing protein"
                     /protein_id="HZC20758.1"
                     /translation="MSVIIKQVTKETSTVPKIAVGILLGILAFGMFVVGYDQGQLAQA
                     LFVPMGIHLNHNQLMMIHEFNHDLRHAAGFPCH"
     gene            1590..2114
                     /locus_tag="VE223_03855"
     CDS             1590..2114
                     /locus_tag="VE223_03855"
                     /inference="COORDINATES: protein motif:HMM:NF025897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HZC20759.1"
                     /translation="MSRSLLCKELSLCEGVVRTLLKHLKMQDLIESTKNGTTMTEKGM
                     TMLSGLVSSMPVQISIPKYSVTLGKFNHVVLLKQFGFAIKSGIEQRDAAIKMGATGTT
                     TLLFKDDKFVMVCTNYDSLADEPRIAKFLVEKLRPEDGDVIIIGSTTENQRIAELAAK
                     NAALLTIMDHEEHV"
     gene            complement(2086..2268)
                     /locus_tag="VE223_03860"
     CDS             complement(2086..2268)
                     /locus_tag="VE223_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20760.1"
                     /translation="MMVDILGKELERMVTSTYVTSVSVNLPERGSNEFNKVYPAAAAA
                     RPIEDIIFKHVLHDPL"
     gene            2897..>3833
                     /locus_tag="VE223_03865"
     CDS             2897..>3833
                     /locus_tag="VE223_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HZC20761.1"
                     /translation="MVNLFCLTAEQIVKGIKNRDFSAEEYISQILERIEKIDRQINAF
                     TIVDDNGALKKARSIDKKIRDGEDEKNIGSLAGVAVGVKDNICTSGLKTTCASKMLED
                     YVSPYDATVIKKLKDSDAIIVGKLNLDEFAMGSTTEFSRFGATRNPWNVNYVAGGSSG
                     GSAASVAALECAVSLGSDTGGSVRCPASFCSVVGMKPTYGRVSRFGLISYANSLEQIG
                     PIGKTVSDTMMVMNSIDGMDDNDQTTINNKAQKYTPRSKRNIRVGLVKELVEGTEPEI
                     SRCIYSAMDLFSRSDCKCEETSMKSIEFALASYYTI"
BASE COUNT         1262 a          659 c          723 g         1189 t
ORIGIN      
        1 aaaggaatct tttaagaaaa attgattcag agttgagacg aagaagaagg agaaataaag
       61 atcaccttac aagttcccaa aaatgttctt agtgtttaag cactttgctg ttgttgttgt
      121 tgctgactac gaggtacaag gttgaagaaa gaaatcaact tgcataaaac agctagtact
      181 atatacttat gacgttggtt ctcgtttctc atcagcacat gacaagtagt taatggtcct
      241 gctaatgatc cgctataagg tagaccatta tcgtggagtt gatatctgta ttggcaggaa
      301 ctaaactgtt gatgcaatct ctttacttgt ttcatgcggc ttgaatttgt cccagaatgc
      361 tccaaatatt atacccacta gtccccaaaa tacacctata gtaaatatac ttgcgattct
      421 aaaactcaca atcaaatcca ttggtattgt aattttatcg ggatttggtg gaaagataac
      481 atatgcacca actattatgg caacatagat cagtgggatt gatatccttc tcatttttga
      541 ttgattgctt cctagttttc tataaagtaa agcaagccct aaagtactga aacctgaaac
      601 agctatgaac ccgatgaata aactttccct atagtatatt gtagctggat ttcccacagc
      661 cggcggattt gctggatact ttagtgcagg aaccaagaac aatacaacga acatcaaacc
      721 tgccaaaatg actgctttct tttcattgtc tgaacttggc aaagaactcc tagtatacgc
      781 aaaaactact ccaaataatg acgctagtga tacacccatt ataatagctg ctactatttc
      841 tccctccttc tgccaagtgc gatattgtga ttgttggatg gtatcaataa ttttaccagc
      901 attgacctgc ctctgtgtct caattcctat ggctttatca ataaacggtt caacaatact
      961 ctgattaatt aaaccaagaa gagcacctgc aattgcacca gaaaaaatag ttataaaaat
     1021 aaaaatgaat gttttcaatt ttctattata tcatttctct ttaggctata gtattaatga
     1081 catgggaatc ctgccgcgtg tcttaaatca tgattgaatt catgtatcat cattaattga
     1141 ttgtggttta gatgaattcc cattgggaca aacaaggcct gtgccaactg tccttggtca
     1201 tatcccacta caaacattcc aaatgctaaa attccaagta atatccctac tgctatcttt
     1261 ggtactgtgc tggtttcttt tgtaacctgt ttaataatga cggacattgt ctcttttcct
     1321 atctggtatt atataaactg caggttggtt tatccaacaa ggacaagcca gcttaacgcc
     1381 caaatgaact agcaatacct caccacatag aattaaatga caaatgtcag atgatgatta
     1441 gttacatgca gggataaaat aaaggtgtgg tgcatatgtc tgttaaagca ttagcaaaaa
     1501 ttgcaagcag atatgctcca agcagatctc tttcttttaa tctagttcac ctttttaagg
     1561 cattgcaact tatagaataa aaaggacatg tgagcagatc tttattatgt aaggaattgt
     1621 cactttgcga aggtgttgtc aggacattgc taaaacatct gaaaatgcaa gatctgatag
     1681 agtccacaaa gaatggaaca acaatgacag aaaagggaat gacgatgctt tcaggactag
     1741 tttcctcaat gcctgtacaa ataagcatac caaagtactc tgttacccta ggaaaattca
     1801 atcatgtggt tctgctcaag caatttggat ttgctatcaa atcaggaatt gaacagaggg
     1861 atgctgctat aaaaatggga gcaacaggga ctacgacttt gttatttaaa gatgataaat
     1921 ttgtaatggt ctgtacaaat tacgattcgc tggcagatga accacgcatt gccaaatttt
     1981 tagttgaaaa attaagacct gaagatggag acgttattat aataggaagt actactgaaa
     2041 atcaaagaat tgcagaactt gctgcaaaga atgctgcact tttgactata atggatcatg
     2101 aagaacatgt ttgaaaataa tgtcttcaat tggtcttgct gctgcggctg ctggatatac
     2161 tttattgaac tcattgctcc ctctttctgg aagattaact gaaaccgacg ttacatatgt
     2221 gctggttacc attctttcca attctttccc aagtatgtct accatcatct gttttccaca
     2281 atccatcacc aaatgtattc ttttaagttg ttaaattgtc tggagttatt agaatttgat
     2341 tactaaagac aatagcttta ttctcctttt actgctgcga ccattgtctt attcactagc
     2401 tgatctaaca aactgttaaa gaatgttttt gctatctcca aatgtattcc tgatattcat
     2461 tgtagtagtt atttttagga gacgtcttac ggtcaaaaac attgttatta taatatgata
     2521 aatttgtcaa tgtaacttaa gcaacgtttg tggattccaa tctccatatc ttagaatctt
     2581 taaacaccat aaaccaccat ttgggaagaa ccttgaatta ttacgctata aatgacgtac
     2641 gatattcctg atcaaaagat gtttagtagt aaaaaggcaa agaaaggatt aggcaaagga
     2701 aaaaaatgaa aatgataata gtagaaaatt gatgtaagta aaggttttat cacccaaaaa
     2761 ggcgatctag atatcgatga ttctattact attgcggttg attttagggc ttgaccaact
     2821 cactcgtgca atctactatt actttgactt gatacctatg gtgactgaaa actatactgt
     2881 ttagggggaa tttaagttgg taaacctatt ctgtcttact gcagagcaga ttgttaaagg
     2941 tatcaaaaat agagattttt ctgctgaaga atatatttcc cagatccttg aaagaataga
     3001 aaaaattgat cgtcagatta acgcatttac tattgtagat gacaatggtg cattaaaaaa
     3061 ggcacgttca atagataaaa aaatccgtga tggagaagat gaaaaaaaca taggatcact
     3121 tgcaggtgtc gcagtaggcg tcaaggataa catatgcaca agcggtttga aaactacttg
     3181 tgcttcaaaa atgcttgaag attatgtttc gccatatgat gcaacagtga taaagaaatt
     3241 gaaggatagc gatgcgatca tagttggaaa attaaatctt gatgaattcg caatgggttc
     3301 taccacagaa tttagcagat tcggagcaac tcgcaatcca tggaatgtta attatgttgc
     3361 aggaggttca tctggtggta gtgctgcaag cgttgcagca ttggaatgtg ctgtatcgct
     3421 aggctctgat actggaggat cagttagatg tcctgctagt ttttgctcag tagtaggcat
     3481 gaaaccaacg tatggtcgcg ttagtcgatt cggacttata tcatatgcca atagtctaga
     3541 gcagatcgga ccaattggta agacagtttc tgatactatg atggttatga actcaataga
     3601 tggtatggat gataatgatc agactaccat aaataacaaa gcacaaaaat atacaccccg
     3661 aagtaaaaga aatattcgtg ttggactagt gaaggaatta gttgaaggaa ctgaaccaga
     3721 gatttcaaga tgcatttatt ctgctatgga tttattttcg agatctgatt gtaaatgtga
     3781 agaaacgtca atgaagtcga ttgaatttgc gcttgcttct tactatacaa tag
//
LOCUS       DASQSJ010000197         3844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_182595, whole genome shotgun sequence.
ACCESSION   DASQSJ010000197 DASQSJ010000000
VERSION     DASQSJ010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182595"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1175)
                     /locus_tag="VE223_03870"
     CDS             complement(<1..1175)
                     /locus_tag="VE223_03870"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HZC20762.1"
                     /translation="MTSKQISPVNLTHNIVFAILAVSLALVLFTGSFLTISSIVFSSA
                     IAYSGTSTAATPTTSSIDKEVIISPQVKNFILSQIVNKSKASIVIGFVNPNGTHIFSF
                     GNISKANNIPVNENTLFDIGSITKTFTTLLLADMVKQGIVNLNDPIEKYLPANVKVPQ
                     YDGVKITLEDLASHTSGLPEWPSNIWLNNNVGVFNLNYNEAMLYQGLSNTVLTREPGS
                     QFQYSSFGIGLLAHILSVKAGVPYEQLVKHRILDVLGMNDTKITLSPNEIKNRFSIGH
                     QDGKEITTPPIPEIVAGAGAFRSTAADLLKYTSANLGFLHTKLDDAIQLYHLIIHPII
                     PANPMNYSEYVALDWRVITNLGTEILSHEGAINGWNALVAFIPTKQIGVALLCSCDS"
     gene            complement(1733..2173)
                     /locus_tag="VE223_03875"
     CDS             complement(1733..2173)
                     /locus_tag="VE223_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20763.1"
                     /translation="MSAKKEDRLLAYIAAVATIAGGVLHLMMIGPFLKPANFPMQLLL
                     YTDTLFIVAGLAQIFWALPMIKGWGLRWYYVGILGTAALTISLIFTRLPNEITSTALV
                     DTNPMALLTEISQFLYIGATTIIVRRTYLRQKGKMRSIRLNRDN"
     gene            complement(2175..2411)
                     /locus_tag="VE223_03880"
     CDS             complement(2175..2411)
                     /locus_tag="VE223_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20764.1"
                     /translation="MPLRKIKVIAIMATSGLLLSTGALTALYSQNAFAQVFNTGSANV
                     EICEAGRTLCGTSIYNSNGGFVLGGSVLSGAGGG"
     gene            2882..>3844
                     /locus_tag="VE223_03885"
     CDS             2882..>3844
                     /locus_tag="VE223_03885"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZC20765.1"
                     /translation="MYRTKSMRLSFGLLLLIGILALSFLSSNIFNQQNQALAQQYIQT
                     IKQRNLVIDLGNGVKTNAQLTYPAVGNGKYPAVLLIAGSGAEDMNETAGFIRIDKKTG
                     EKIYPPTPLFQIAQYLSERGFAVLRYDKRGIGTNHTILDSNIWGNLTVNDLVQDTNKA
                     LAVLVNQPEVDANKITVLGHSEGTAISPIVAIDNPSKVKNTVLMGALAQNMSEILYFQ
                     TVTLPISYAQKVLDKNHNGLLSVQEASKDVTFQRLIGGNISLVLTQNLPNGTKVLNPK
                     YNPNKDTFVNINTELKPALIEQAKSFFSPSKKAVATASGSNKCMN"
BASE COUNT         1250 a          686 c          714 g         1194 t
ORIGIN      
        1 tttgaatcac aactacacaa caatgcaaca cctatttgtt tggtagggat aaatgcaact
       61 agagcattcc atccattgat tgctccctca tgagatagta tttctgttcc caaattagta
      121 attactcgcc aatctaaagc gacatattcg ctataattca tagggtttgc aggtatgatc
      181 ggatgtatta tcaaatgata aagttgtatg gcgtcatcta atttagtatg taagaaacct
      241 aaattagcgg atgtatattt taacaaatct gcggcagttg aacggaatgc tccagctcct
      301 gctactattt caggtattgg tggtgtagta atttctttac catcctggtg gcctatggaa
      361 aatctatttt taatttcatt tggtgaaagg gttattttgg tgtcgttcat tccaagtaca
      421 tctagaattc tatgtttaac taattgctca taagggacac cggcttttac cgatagtatg
      481 tgtgctagta atccaattcc gaaacttgaa tattgaaatt gtgaacctgg ttctctagta
      541 aggacagtat ttgataatcc ctggtataac atagcttcat tataatttag attgaaaact
      601 ccgacattat tattgagcca tatgtttgaa ggccattcag gaaggccaga tgtgtgggac
      661 gccaagtctt caagtgttat tttgacacca tcgtattgtg gtacttttac attagcagga
      721 agatattttt caatcgggtc gtttaggttg acaattcctt gctttaccat atcagccaaa
      781 agcaatgtag taaatgtctt tgtgatagag cctatatcaa ataatgtatt ttcgttaact
      841 ggtatgttat tagcttttga aatatttcca aagctaaata tgtgtgtgcc attaggattc
      901 acaaatccta tgacaataga tgcttttgac ttgttgacta tttgactgag aatgaaattc
      961 ttaacttgag gtgatattat tacctcttta tctatagaac tggtagtagg ggtggcagca
     1021 gtactagtac cagaataggc aatagcactc gaaaacacta tagaagaaat agtcagaaat
     1081 gatcccgtga ataaaactaa tgctagagaa acagccagaa tggcaaaaac aatgttatgt
     1141 gtgaggttga caggagaaat ttgtttagat gtcatttggt gtatatgatg atagggcata
     1201 atgttataag gaaatcatat aacaaatatg taaaatgctt acataatcaa aaagtagcaa
     1261 catatacatg cttttggaaa atagttgata attatgacgt attatataaa gaagcttttt
     1321 aatggtctct ttagtcatct agcactcttc ttggatatag aggtcttcaa tctgttacaa
     1381 tggggcccat gttctttcac ggtaactgaa tcagttccca cgggatttaa tattccttgg
     1441 tagtgcatac aaaacgtctc ctccaaattc ggcaactggt accataggtc aaatctcatt
     1501 ctaattatac tcatttgtca catatggaga aaagccgtcg gaaatagcaa tagaattagg
     1561 tcttattgaa aagcaagttg tgcttgtttt tgtattgtta tgaccaacaa gaactcaaaa
     1621 ctatcgggac agaaagccaa gaagtttata taatttggtt aataaggtca catctttcat
     1681 ttatggcttg ctatattgct actatgctga atttgtcatg tccttatctc ttttaattat
     1741 ctcgattcaa acgtattgat cgcatttttc ctttttgccg gagataagtt cttctaacaa
     1801 ttatggtcgt agctcctata tatagaaatt gcgatatctc agttaagaga gccattggat
     1861 ttgtgtcaac tagtgccgta ctagttattt catttgggag tcttgtaaat attaatgata
     1921 tagttaacgc tgctgttccc aatattccaa cgtaatacca gcgtaagccc cagcccttta
     1981 tcattggtaa tgcccaaaat atctgggcaa gtcctgccac tatgaatagc gtgtcagtat
     2041 acagaagcag ttgcattgga aaattagccg gttttaaaaa cggtcctatc atcattagat
     2101 gtaagacccc tcctgcaata gtcgcaactg cagctatata agctagaaga cgatcttctt
     2161 ttttagcaga cactttatcc tcctccagct ccgctcaata cactacctcc taagacaaat
     2221 ccgccattgg agttatagat acttgttcca cataatgttc tgccagcttc gcagatttcg
     2281 acatttgcgc taccagtatt gaagacttgt gcaaatgcgt tctgtgagta cagcgcagtt
     2341 agtgcacctg tagataagag taatcctgag gttgccatta ttgcgatcac ctttattttg
     2401 cgcagtggca tgacattctt aaatcttgtg attcggacaa ggccaaattc ggaataaagc
     2461 taaaacgggg tactggtcct tgctaactta accgtttcca tgcgtccgtg attggttaag
     2521 tgagtctcta ttcgataacc gctgaggcaa ggctaatttg caaccttcgt accatatgcc
     2581 ctgaagcaat gtgaactatg atgaaacacc taaaaaagaa aatccgttta ttacataatg
     2641 gatctattat tgataaagac gagagacatc gactagaagt catcctaaaa acaaggatgt
     2701 ggaatctata ttgtattaga catcaaggta agttacatta tccaacccta gagacttttg
     2761 agaatcgtct gaatagatat cctaccagta ttttatgata ctatgtctaa aacgccttca
     2821 taacgtctct atattatcca tgaaaattca aatacaagta tcatattagt agaacggcaa
     2881 gttgtataga actaaaagta tgaggttgtc atttggatta ttattattaa taggcatact
     2941 cgcattatca tttttatcta gtaatatttt caaccaacaa aaccaagcac tagctcaaca
     3001 atacatccag acaataaaac aaagaaatct agtcatagac ttgggtaatg gagtaaagac
     3061 taatgctcag cttacttatc ctgctgttgg aaatggaaaa tatccagctg ttttgctcat
     3121 agccggatct ggtgcagaag atatgaatga aactgcaggt tttattcgta ttgataagaa
     3181 gacaggagaa aagatatacc caccaactcc acttttccaa atagctcaat atctatctga
     3241 gagaggattt gcagtattac ggtatgataa gagaggaata ggtacaaatc atacgattct
     3301 agatagcaac atatggggaa atttgacagt taatgatcta gtacaggata caaacaaagc
     3361 tttagcagta ttggttaacc agcctgaagt tgatgctaat aaaataacag tactaggcca
     3421 tagcgaaggt acagcaatat cccctatagt tgcaattgat aacccaagta aagttaagaa
     3481 tactgtactt atgggcgcat tagcacagaa catgagtgaa atactgtact ttcaaacagt
     3541 aaccttgcct atttcatatg ctcaaaaagt attagataaa aatcataatg gattgctctc
     3601 agtgcaggaa gcatctaagg atgtaacatt tcagcgtctg attggcggta acataagcct
     3661 agttcttaca cagaatctgc caaatggcac taaagtgcta aatccaaaat acaatccaaa
     3721 taaagatact tttgtaaaca tcaatacgga gctcaaacca gctttaatag aacaggcaaa
     3781 atcatttttc tcaccatcaa aaaaagcagt agcaacagca tcaggatcga acaagtgtat
     3841 gaac
//
LOCUS       DASQSJ010000198         2072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_222770, whole genome shotgun sequence.
ACCESSION   DASQSJ010000198 DASQSJ010000000
VERSION     DASQSJ010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2072
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222770"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            701..>2072
                     /locus_tag="VE223_03890"
     CDS             701..>2072
                     /locus_tag="VE223_03890"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HZC20766.1"
                     /translation="MFPKIVDVSTSLSDVKDDSIIAISGFNMATTPEYLILELYKRYK
                     EQGHPRNIFIISDALPAVPGRALDQIAERLYKEPNQQFLKGALMPFLGFSPWFQKLVT
                     DNRIECYGWPIGVTAYWFREIGSGRPGLLSKIGVDTFLDPRQDSAALNELARRNASCH
                     VSVIDIDGEDYLLYQAPKPNYAMIRASVSDENGNLSLQDEGMKGTVLSITQSAKAGGP
                     NQGMVIAQVRWITKLGTINPRDVDVPGPLVNYIVVSPKEYHWQCGSIEYDPRLSYKII
                     PPARENLLVDGGIPEISVGVHKKVIARRILLELIGLFKTKQSPVLVNLGIGIPALISL
                     IAAEENVTDFIITVLESGPWGGLALPGNDFGLAISPFALSTIPDVFSNFEGGIIDAAS
                     LGFLQVDKRGNVNPSILPDRIFGPGRFPVIAGGVPRIYFAGSFMGGKSDIKVADNKIR
                     ILRDGTI"
BASE COUNT          655 a          387 c          407 g          623 t
ORIGIN      
        1 agttggtttc taagtgacga ctttaaaaaa ctaagggaag gttttatccc tctagactac
       61 agcaaaacta ttactacctc gccatccaat gatactcatt gatgatgacc ttacagaaga
      121 tgagagtata aaggaagaga ctaatgatat ctcatcaaga ttattaccag cgcctctata
      181 tcgcataggt ccaatgcact gaaacactat atctttttta tcaaatggtt tatagttact
      241 cctaatacaa caagtttttc taatccaata gagcaaaagc agcagcatta tctacagaac
      301 caaaaagaca gcacagagtt tgacaacgat aaagatatta ttgtttgcta ttggacacag
      361 cattgcaatg aatactattt ttcttgttag ggccgatttc caaagcagca gatgaaatac
      421 atcatcattt ggaatgtatt actctggttc taaaatgcga taagttatct tgtagcacat
      481 gccttcctta ctaaatcacg ctcagtcact atgtctatag gttttttatc attattcttg
      541 ttatcggcta ctactaccaa tgaccctgtg gatttcgtaa atggttacca aactatggct
      601 tcttttcaat tttattcaat ttgtcaagcg actcacatat tgacttcttt acatctagta
      661 acgatactta tatgaatgat aaaaagactc ttatcactaa atgtttccta aaatcgttga
      721 tgtatctact tctctttctg atgtaaaaga tgatagcatc atcgccattt ctggctttaa
      781 catggctaca actcctgaat atttaatcct tgaattatac aaacgctata aagaacaagg
      841 acatccaagg aatatattca taatctcaga tgctctacct gctgtgcctg gaagagcatt
      901 agaccaaatt gctgaaagat tgtacaagga gccaaaccaa caatttctca aaggtgcttt
      961 gatgcctttc ttgggatttt ctccatggtt tcaaaagcta gtgacagata acagaataga
     1021 gtgttatgga tggcccatag gtgttactgc gtattggttt agagaaatag gctctggaag
     1081 accgggcctt ttatcaaaaa taggggtgga tacttttctt gatccaagac aagatagcgc
     1141 tgcattaaat gaacttgcaa ggagaaatgc ttcatgccat gtcagcgtta tcgacattga
     1201 cggagaagat taccttctat atcaagctcc taaaccaaat tatgctatga ttagagcctc
     1261 tgtatctgat gagaatggta acctatcatt acaagatgag ggtatgaagg gtactgttct
     1321 tagcatcacc caatctgcta aagctggagg accaaaccaa ggaatggtaa tagcacaagt
     1381 aagatggatc acaaagttgg gtacaataaa tccaagggat gtagacgtgc caggcccact
     1441 agtaaattat attgtcgttt ctccaaaaga gtaccactgg cagtgtggga gtatagaata
     1501 cgatccaagg ctatcttata aaataatccc gccggctaga gagaatctgc ttgtagacgg
     1561 tggcataccc gaaatatcgg taggagtaca taaaaaagta atagcaagac ggattctatt
     1621 ggagttgatt ggattattta aaacaaagca atcacctgtt ttggtcaatc taggaatagg
     1681 tatccctgct ttgatttctt taatagcagc tgaggagaac gtaactgatt tcataataac
     1741 ggtacttgaa tccgggcctt ggggaggcct tgctcttccg ggaaatgact ttggattggc
     1801 aataagccct tttgcactct ctactatacc tgatgtattt tctaattttg agggaggaat
     1861 aattgacgcc gcgtcacttg gatttcttca agtcgacaaa agagggaatg tcaatccctc
     1921 tatattacct gataggattt tcggaccagg tcgctttcct gttatagccg gaggggtgcc
     1981 tcgtatatat tttgcaggct ctttcatggg aggaaaaagt gacattaaag tagcagataa
     2041 caaaattaga attttacgtg atggtacaat ac
//
LOCUS       DASQSJ010000199         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_182653, whole genome shotgun sequence.
ACCESSION   DASQSJ010000199 DASQSJ010000000
VERSION     DASQSJ010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182653"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            429..1358
                     /locus_tag="VE223_03895"
     CDS             429..1358
                     /locus_tag="VE223_03895"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HZC20767.1"
                     /translation="MINITTKTSTNLWPALPLTEWKDTYDTLHRWTQIVGKIRLALTT
                     LVNHWWNSTLYVTPHGLTTSTMYYNGSLLQIDFDFISHLLIIVTSDNPTAKTISLRPC
                     SVAEFYQEIMAALRSLGIIVSIWTTPVEIPDRTPFEQDTKHKSYDPEYVQRFWQILAQ
                     TSRVLSVFRSRFIGKVSPVHFFWGAFDLAITRFSGRRAPTHPGVPYCPPFVMHEAYSH
                     EVSSCGFWPGGEPVNEPVFYAYSYPEPLGFSKYHIQPKGAFYHTEMREFILPYNLVRS
                     ANSPDEVLLAFLQSTYEAAATCAKWDRNALERQ"
     gene            1534..1665
                     /locus_tag="VE223_03900"
     CDS             1534..1665
                     /locus_tag="VE223_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20768.1"
                     /translation="MMEKGLKQQNFDNIQSYIEDTGEVNWLIQDALNICNGTLQIQN"
BASE COUNT          848 a          465 c          478 g          773 t
ORIGIN      
        1 cacttttact catggacaaa cactaaatta atctgattat cagaaataac ctttccttac
       61 caaagaggat gtgtattgtt cattgtaaaa tggtcattaa tcccatctac atctgagcgc
      121 aacaaagctc gatattataa aaatacgaca tttcgggact atccaaatac attgagaagt
      181 ttttattgca aatgtaaacg acgattcctg aaagaccatt acagcgaaag gtcaggtatt
      241 ttttcgctga gattattgtt gtggatttgt aactagtttt ggtataaaat cttagatgcc
      301 agtattcaaa ttacgatggt aatacgatca taaaatctta gatatcagga tctattctat
      361 atatacccat aggtattcga aatgtgcaaa catctaacgc cacataagag gcgaggggta
      421 aaaaatcaat gattaacatt acgacaaaaa catcaacaaa tctatggcca gcattaccgt
      481 tgacagaatg gaaagatacc tatgataccc ttcatagatg gactcaaatt gtaggaaaaa
      541 taagacttgc actcacgaca ttggtaaacc actggtggaa ttctactctg tatgttactc
      601 cacatggact cacaacatcg actatgtatt ataatggtag cctcttacaa atagactttg
      661 attttatttc acatcttctt atcattgtaa cttctgacaa tcctactgcg aagacaatat
      721 ctctccgacc atgttcagta gctgaatttt atcaagaaat tatggcagca ttaagatcgc
      781 ttggaataat tgtaagtatt tggaccacgc cagtagagat accagacagg acaccatttg
      841 agcaggacac gaaacataaa tcttatgatc ctgaatatgt acagcgattc tggcaaattc
      901 ttgctcagac tagccgagta ctttcagtgt tccgctcccg tttcattggc aaagtaagcc
      961 ctgtgcattt tttctgggga gcttttgatc ttgccattac tcgcttttca ggacgcagag
     1021 cgcctacaca tccaggagta ccttattgtc ctccctttgt gatgcatgaa gcttattcac
     1081 atgaagtgag tagttgcggt ttttggcctg gtggcgagcc tgtcaatgaa cctgtattct
     1141 acgcttattc ctatcctgag ccactgggtt tcagcaagta tcatatccaa ccaaaggggg
     1201 cattttacca taccgaaatg agagaattca tattaccata taatctagtg cgcagcgcaa
     1261 actcgccgga tgaggttttg ttagcatttc tgcaaagcac atacgaagct gcagcaactt
     1321 gtgcaaaatg ggatcgaaat gcattggagc gtcagtaaat aaaggtgaat atactttagg
     1381 tgacaacttg acccctttag ctgctactca cttatgcttc ttctccccag tctcatgttg
     1441 catttttggt actaaccatg tggcaaattc aacggataca tgtctagtct tttgttttct
     1501 gctgctgttt ttagaggata gctagttgtt gaattgatgg aaaagggatt gaagcagcaa
     1561 aattttgaca atatccaaag ttatattgaa gatacaggag aagttaattg gttgatacaa
     1621 gatgctctaa acatctgtaa tggaactctt caaatccaga attgaagata gcgatacata
     1681 caaagctata gcattaatga ggcatggatt tggagtccat cattttggaa aagagagtat
     1741 atagcaaaag aacgaaagaa tagtagaatc gctggagtat agatatagag aatcgcattc
     1801 ttgtgtataa tacgaagccg gcttgataca aacggaaacg cacaaagtaa ctaactagga
     1861 acatggagac ccgtcataag aagatcaaat tttatgtggt atctgttatg gcgtgctacc
     1921 tattttgata agagtagaat atcagtatac gatttgatga tgttgggtga gttgatgacc
     1981 atatgataac catattgcaa cagagactgg atgacctgca acaaaaaggt gcatcaccgc
     2041 tttgtactct atcagaccta tcactaataa caataacatc agcttgctag tatagtcaat
     2101 tattattatg catctacagc aaagtttttg tacctttcga attcttttta tacatagcat
     2161 ttactaaata tctttaattg tcatttttta cgtggacaca aaattatcaa aaatgtcaaa
     2221 acagaacttt tacaaaaata ataaattgac ccctctaaat ttggggtcct ctgaacaaag
     2281 tatatctaga tatacatcaa aatgtaaatc tataattaat acgaagattt tttagcacaa
     2341 gtcgccatct tctacaaacc cctattttga attcgtccaa aattgcgtga taacaaatgg
     2401 gtacagggga taatagatga caacgataag gtaatacatg aaaacaaaga ggacatacat
     2461 gaaaacgtgt ggttaacaag gtgtacaagc tggtaacagg ctatttttgt tttaaatgcg
     2521 gcttttataa tatagtttga catgacaata gattttgatt caaa
//
LOCUS       DASQSJ010000200         3677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_369329, whole genome shotgun sequence.
ACCESSION   DASQSJ010000200 DASQSJ010000000
VERSION     DASQSJ010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369329"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..280
                     /locus_tag="VE223_03905"
     CDS             <1..280
                     /locus_tag="VE223_03905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20769.1"
                     /translation="LPIDTKERILSKLYYLRKDATQLYYRGKLNKTDYEDFLKKLEEE
                     GKKISTTSTSRSTNNESITSPTKSIQKSRCDHRCNKLLVLTLLSALVY"
     gene            complement(290..598)
                     /locus_tag="VE223_03910"
     CDS             complement(290..598)
                     /locus_tag="VE223_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20770.1"
                     /translation="MCLNEFCNNDDDKRRRPGQRGGEDSNQPPADFPSTTLVQMLTVL
                     QRMESTLNDILSVLMVTRFEAKTRLPKSQKKTTEAAASDDEPIRRLRRLRDDAAGREL
                     "
     gene            complement(585..851)
                     /locus_tag="VE223_03915"
     CDS             complement(585..851)
                     /locus_tag="VE223_03915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20771.1"
                     /translation="MSNSDENNGHNNGNGEQSQQQLVQPQPIEQQTAVVYPISIKLEQ
                     DPKGRVKCSVHCHSNDEDTIREQVVRLFVKTQDDLKGKGINVLE"
     gene            complement(848..1051)
                     /locus_tag="VE223_03920"
     CDS             complement(848..1051)
                     /locus_tag="VE223_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20772.1"
                     /translation="MAITFDDSHVTNSGKKIPLEAKTHEPHSCEENPYNNGIKQLTET
                     EMVTITVTMVIQSQKYQDQQHLL"
     gene            complement(1292..1414)
                     /locus_tag="VE223_03925"
     CDS             complement(1292..1414)
                     /locus_tag="VE223_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20773.1"
                     /translation="MSYGHEQIYLSVQFANAADSKGEPSLVYDLDIITAAEDDK"
     gene            complement(1751..2785)
                     /locus_tag="VE223_03930"
     CDS             complement(1751..2785)
                     /locus_tag="VE223_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HZC20774.1"
                     /translation="MVWYVTSDQALLQCRGSKTRKEHHNNKRFSTKNVRSLENKNSPP
                     STHTQILCSICERNDKLVTDPESGEVICSNCGMVLSDKIEEISRPEGNAFSADNKHRI
                     GAPTSLARYDMGLTSVIGKTNRDASGQKMDESMRSTMQRLRTWDSRAYIHSSNDRSLI
                     QAFNELNIMKDKLALSDAIVEKSAYIYRKSQARGLVRGRTTSGIMAAAIYAVCREMET
                     PRTLKDIAAAGNIRRKVLAKAYRKLIVELDFKVPNIDPIKCIVKVANKANLSEKIKRQ
                     AMSIMNDVTNNEISAGKDPMAIAATVLYVSCIKNGENIKQNNISNAAGITGVTLRNRF
                     KDLKSQLELN"
BASE COUNT         1053 a          740 c          615 g         1269 t
ORIGIN      
        1 attaccaata gatacaaaag aacgtatttt atcaaaatta tattatctta gaaaagatgc
       61 aacccaattg tattacaggg gaaaattgaa taaaacagat tatgaggatt ttcttaagaa
      121 gttagaagaa gaaggtaaaa aaataagtac cactagtact tccagaagta ctaataacga
      181 gtctataact tcacctacaa aatcaattca aaaatctcgt tgtgatcacc gctgcaataa
      241 attgctggtg ctaactcttc tttctgctct tgtttattga tcatatctat taaagttccc
      301 tccctgctgc atcatcacgc agtctacgca gtctgcgtat cggttcatca tctgaggccg
      361 ccgcttctgt tgttttcttt tgtgactttg gcaatcttgt ctttgcctcg aatctggtga
      421 ccatcaaaac agataaaata tcgtttagcg ttgattccat ccgctgaagt acggttaaca
      481 tctgtaccaa agtagtgcta gggaaatcag cgggtggttg attactatcc tctcctcccc
      541 gctgccctgg ccttcgtctc ttgtcatcat cgttattaca gaattcattc aagcacattg
      601 atacccttcc ccttcaaatc gtcttgcgtc ttgacgaata atctaacgac ttgctctctt
      661 atcgtatcct catcattgct atggcaatgg acagaacatt taacgcggcc ttttgggtct
      721 tgctctagct ttattgatat tgggtaaact accgctgttt gttgctctat tggttgtggt
      781 tgtactagct gttgttgtga ttgttcaccg tttccattat tatgaccatt gttctcatca
      841 ctgttactca tagtaaatgc tgctggtctt ggtatttctg gctttgtatc accattgtta
      901 ccgttatcgt taccatttcc gtttccgtta actgttttat tccgttattg tacggattct
      961 cttcgcatga gtgcggttca tgagtttttg cctcaagtgg aatctttttc cccgaattcg
     1021 ttacgtggct gtcatcaaaa gtgattgcca ctttgtgaca gtactgacag cacagataga
     1081 taaatcaaga caaatgagac gggagagaag cagccagggc tttactaata aaagcaatat
     1141 tgcaatggga tttccagtcg ataagaaatg attatagtgt aaagatacta aaatatggtg
     1201 ccttttttcc ttatgcatac gaagtgaagt agcctagtat tcttctttct gtctaactgg
     1261 attatccata tttgacaact tttgaatcaa cttatttatc atcctctgct gctgtaataa
     1321 tatcaaggtc ataaacaagg gaaggctctc cttttgaatc tgcagcatta gcgaattgta
     1381 cagaaagata tatctgctca tgtccataac tcacaatacg atgcaggctt tatagctcca
     1441 tgcaatgata agaaaactag gttattagga tttgcataga cgccccaatt tgggtttccc
     1501 tcattctctg ttttagctct ctaaaatacg ttaaaacgta ccatgctcag tacaaccatt
     1561 gtttatccga ttgaatggct tgctacgcgc gaagatattc attgttgtag tacttggtat
     1621 tctgctacca acaacaatgg atctcttgac attctttaat aaccacaaat gccatagata
     1681 tatggacaat ttgttttgaa cgaaactctt ttttcttcct ctcttcccct gaaacaagag
     1741 gtattatatt ttaattcaat tcgagctgac tttttaaatc tttaaaccta ttcctgagag
     1801 ttacccctgt tattcctgct gcatttgaaa tattgttttg ctttatattt tctccattct
     1861 taatgcatga tacataaagt actgtcgctg caatagccat cggatctttt ccagcagata
     1921 tctcattatt tgtaacatca ttcataatac tcattgcctg acgttttatc ttttcactta
     1981 gattagcctt gttcgctact ttcactatac attttattgg atcaatatta ggaactttaa
     2041 agtcaagttc aacgattagc tttctatatg cttttgcaag aacctttctt ctgatattac
     2101 cagctgcagc aatgtctttt agtgtacgtg gagtttccat ttctctacat acagcatata
     2161 ttgcagcagc cattattcca gaagtcgttc ttccccgtac taatcctcta gcctgagatt
     2221 ttctgtagat atacgcgctc ttttctacta ttgcatctga tagggcaagt ttatccttca
     2281 ttatattaag ttcattgaaa gcttggataa gactcctatc gttagaacta tgtatatatg
     2341 cccttgagtc ccatgtcctt aacctttgca ttgtagaacg cattgattcg tccatctttt
     2401 gtccgctagc atccctgtta gtcttaccaa taacagaagt aagtcccata tcatatctag
     2461 ctagggaagt tggagctcct attctgtgtt tattatcagc gctgaaagca ttcccttctg
     2521 gtcggcttat ctcctcaatt ttgtctgaca ataccattcc acagttgctg caaataactt
     2581 cacctgattc aggatccgtt actagtttgt catttctttc acatatagaa cacaaaattt
     2641 gcgtatgtgt ggaaggagga ctatttttat tttctaaact ccttacattc ttagtagaga
     2701 accgtttatt gttatgatgt tctttacgag tttttgaacc cctgcattga agaagagctt
     2761 ggtcagaagt tacataccag accattacgt gatttgcaag tcattgaaga taaaagctat
     2821 gttttatttg tactgcaaag tacactcgat tcaagttttt gtgtactatt tgataaattg
     2881 cgttgttatg cattaacttg agtttagcat tgtaaaagat tgatgtgcta actgggtttt
     2941 tatttttact ttctatatat gtctgctacc aattaaattt catcaaagaa aacatatcac
     3001 agccaaatac acgacggctg ttagtaacag acccagttac aaagagatga agtcatattc
     3061 cagcatacca gcactacaaa acctatcgtc cttatatctc catcattaca tacaggactt
     3121 gatttaaaaa atgagctatc ccgatttcaa ataataacca catatccaac agcagtagta
     3181 ggcttggcta ttacactatt gagcataata gtagaagaga aacaagatga tagtgcaact
     3241 aaagttatca acaatattct aagatagctg ttcaaagact cctgaaaatc cccactacaa
     3301 tataatttaa cttggttatg aacttaaagt tctcaggtgt cttgtcgaac caatttttaa
     3361 ctgtgaaaac gttaggtgtt ttataaaagg aagaatcaat ctctacataa ttaaagacgg
     3421 aagcataaaa ctttagctaa tcagaagaag aatccagatt ggaaggatag aatgatcctt
     3481 gccaagctga ataactccat ccagagcagc caatatagta ttgcaactaa gataccttct
     3541 attgtaatac tagtaggtac attgtgttgt tttatgttca attttatttg gcaatttaac
     3601 gtgtactcag cacatcgatc tcctttgatt atgttaccgt gataccagta gataccgcca
     3661 ttgctacctt gatttca
//
LOCUS       DASQSJ010000201         2918 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_501868, whole genome shotgun sequence.
ACCESSION   DASQSJ010000201 DASQSJ010000000
VERSION     DASQSJ010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501868"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1053)
                     /gene="metK"
                     /locus_tag="VE223_03935"
     CDS             complement(<1..1053)
                     /gene="metK"
                     /locus_tag="VE223_03935"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HZC20775.1"
                     /translation="MVRRFLFTSESVTEGHPDKMCDQISDSILDEFLRQDPESRIAVE
                     SMTTTGIVFVAGEVTSKGKVDVQKLVRDTIWEIGYDKPEYGFDFNSCSVLVSLHEQSP
                     DISIGVTSKSNKEQGAGDQGLMFGYATNETHELMPLPITMAHKLTMKLSEVRKKKELS
                     WVRPDGKSQVSVIYEDCKPKGIDTVVISTQHTPDISLSQLRDEIISNVIKPVCNDWIN
                     DKTKFLVNPTGRFVIGGPPGDTGLTGRKIIADTYGGMGRHGGGAFSGKDPSKVDRSAC
                     YMARYVAKNIVAAGLADKCEVQIAYAIGVAEPVSIMVDTFGTGKVVEETIEEKVGKSF
                     DMRPAGIIKMLDLKRPI"
     gene            complement(1103..1360)
                     /locus_tag="VE223_03940"
     CDS             complement(1103..1360)
                     /locus_tag="VE223_03940"
                     /inference="COORDINATES: protein motif:HMM:NF013582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0000398 - mRNA splicing, via spliceosome
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="U6 snRNA-associated Sm-like protein LSm6"
                     /protein_id="HZC20776.1"
                     /translation="MSSSTPSQQQPKRPLSTLQRSLNRKVAVRLKNEIEYRGRMNNVD
                     SYMNLILVDAEEFNGADVIANYGKVVIRGNNVLFIRLEKEF"
     gene            1631..2359
                     /locus_tag="VE223_03945"
     CDS             1631..2359
                     /locus_tag="VE223_03945"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20777.1"
                     /translation="MTAIIRTGSMSIDRLLGGGIRSGMVTDIFGQSGAGKSQLCFMLC
                     VNYAKCSRQEDAILFIDTVGTFRPERISEIAGTKKSNNVLNKIIFVRALSTADQINAI
                     KRIPDINARLTIIDTATSLFSDEFTGVTRHMALRKYLHRLSIAAINFDCAIVITNMIR
                     TVPIRTTIIDQGGGHDITITKTITNSFQHREFMETSVSIYTHMKLKLEVISLEKSLFR
                     ASLIQPPQKRHALFTITSKGIGDE"
     gene            complement(2482..2883)
                     /locus_tag="VE223_03950"
     CDS             complement(2482..2883)
                     /locus_tag="VE223_03950"
                     /inference="COORDINATES: protein motif:HMM:NF020341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HZC20778.1"
                     /translation="MVSSQSNNNNNNKEDVLKAIFQKQKELHQTIMTYSQPFDSQYSK
                     KFLFLSKEERLSMLCTAIIHEAVELQRLTNWKWWKKAVEFNEQQAKEELIDLWHFIVD
                     ASIELEMTPQDILYEYIKKNQINKDRQKNDY"
BASE COUNT          877 a          580 c          465 g          996 t
ORIGIN      
        1 gattggtctt tttaaatcaa gcattttaat aattcctgct ggcctcatat cgaagctttt
       61 tcctactttc tcttcaattg tttcctcgac taccttacct gtcccaaatg tgtccaccat
      121 tatagataca ggctctgcta cgccgatagc atatgcaatt tgtacttcgc atttgtctgc
      181 caatcctgct gcaacaatat tcttggctac atatctagcc atataacatg cagacctatc
      241 tacttttgac ggatcctttc cagaaaaagc gccgccgcca tgtcttccca tacctccata
      301 agtatctgcg ataatttttc tgccagttag accggtatca cctggtggtc caccaattac
      361 aaatctgcca gtaggattaa caaggaattt ggttttatca ttaatccagt cattacaaac
      421 tggttttatc acattactaa taatttcatc tcttagttga cttaaactta tatcgggcgt
      481 atgttgtgtg gagattacaa ctgtgtcaat tccttttggt ttacaatctt catatatgac
      541 agatacttgt gacttaccat ctggccgaac ccagctcaat tcttttttct ttctcacctc
      601 tgataatttc atagttagtt tgtgagccat cgtaattggc aatggcatta actcatgtgt
      661 ttcgtttgtt gcatatccaa acatgagacc ttggtctccc gctccctgct ctttgttact
      721 tttggaagta acacctattg aaatgtcagg actttgttca tgtaatgata ccaatacaga
      781 acagctgtta aaatcaaatc catattctgg tttatcatag cctatttccc aaatagtatc
      841 acggacaagt ttttgcacat ccacttttcc tttcgaagtg acttcacccg caacaaatac
      901 aatacctgta gttgtcatgg attctactgc aatacgtgat tcaggatctt gcctaaggaa
      961 ttcatctaag attgagtctg aaatctggtc acacattttg tccggatgac cttcggtaac
     1021 gctttccgag gtgaatagaa atcttctaac catttttcat ctaccattac caccacacgc
     1081 gtcaattaca ccttaattgt tattagaact ctttttctag ccttataaag agcacgttat
     1141 tacctctaat taccactttg ccataatttg ctataacatc tgctccatta aactcttcgg
     1201 catcgacaag aattaaattc atataagaat caacattatt cattctacca cggtattcaa
     1261 tttcattctt caatctcact gcaacctttc tatttagtga gcgctgtagc gtagacaaag
     1321 gtcgttttgg ttgttgctgt gatggcgttg aagatgacaa ttcaattaat cactttgcaa
     1381 ttcaaagcaa cgtggctaca ataaaaaggt tcctttgtca ttaatgatac tgttaactta
     1441 actgctttca catcctaaat tagtaaattc ttcaatattg aatttgatga cagatgcata
     1501 aatataaaaa gaattagtca tctgttatat gtaggaggat gctggtctaa ttcttatcat
     1561 ttcttgtatg tagtaaatgt aacggtctta acgacatatg aatttattca agtgtttatt
     1621 attatagcta ttgacagcaa ttatacgcac aggttccatg tcgattgatc gtcttcttgg
     1681 aggtggaatc cgcagcggca tggttaccga tattttcggt cagagtggag caggcaaatc
     1741 gcaattgtgt tttatgctgt gtgtcaatta tgctaaatgt tctagacaag aagatgcaat
     1801 attgtttatt gatacagtgg gaacttttag acccgaaaga atttccgaaa ttgcaggaac
     1861 taagaaaagt aataatgttc tcaataaaat catatttgtt agagctcttt caacagccga
     1921 ccagataaat gcaataaaga gaattcctga tatcaatgca cgactgacaa taattgatac
     1981 agcgacatca ttgttttctg atgaatttac aggtgtcaca agacacatgg cattgaggaa
     2041 ataccttcac agattgtcca ttgcggctat taattttgat tgtgctatag taataacaaa
     2101 catgattaga actgttccaa tcagaacaac aataatagat caaggtggag gacatgatat
     2161 tacaataaca aaaacaataa ctaattcatt tcaacatcgt gaattcatgg aaacttcagt
     2221 ttcaatttac acacatatga aactaaaact cgaagttatt agtttggaaa aatcactgtt
     2281 tagagcaagt ttgattcaac ctccacaaaa aaggcatgca ctatttacta taacttccaa
     2341 aggtattgga gatgaataat tacctatgca attacaccgc aaattcggat ctagatttat
     2401 agatcgagta aactcatgct ataattagaa taaactggtc gaatattaaa agaagaccac
     2461 aagacaaact aacaactgcg attagtagtc attcttttgt ctgtctttgt ttatttggtt
     2521 cttctttata tattcataca atatatcttg aggtgtcatt tcaagctcta ttgatgcatc
     2581 aactatgaaa tgccataggt caatgagttc ctcctttgct tgttgctcat taaactctac
     2641 tgccttcttc caccacttcc aatttgttaa tctttgcaat tctactgctt catggattat
     2701 agcagtacaa agcatagata gtctttcctc ctttgataga aaaagaaatt tctttgaata
     2761 ttgtgagtca aaaggttgcg aatacgtcat gatagtctga tgcaactctt tttgtttttg
     2821 aaaaatagct tttagtacat cttctttgtt attattgtta ttattagact gactagacac
     2881 catcgctcct cagccctgct gtgaatttac ccttatcc
//
LOCUS       DASQSJ010000202         2175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_104061, whole genome shotgun sequence.
ACCESSION   DASQSJ010000202 DASQSJ010000000
VERSION     DASQSJ010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104061"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(428..>2175)
                     /locus_tag="VE223_03955"
     CDS             complement(428..>2175)
                     /locus_tag="VE223_03955"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HZC20779.1"
                     /translation="DFFYGVNLSRALTQSFKNSNNGKRYYNLSIGRVQGPTLAFVVDK
                     ETEIRKHIPVPYWNIHAEFEKNDQLIEAQYCEQKVMSLSEATSIVKACTGQSGRITEI
                     KTQMISRKASAPFNLGDLQREAYRVFKFSPSFTLKIAEKLYLRALISYPRTSSQKIPP
                     SIDYKKIILGVSKISLFGPYDTTDDNKSSDADQSCYKNLAMSLLSQTHLSPIEGSKTD
                     PAHPAIYPTGEKPTSKLDIAELKIFDLIIKRFFAAFGKPSMTCLTSATIQVKNHYLFE
                     SHASKTIYEGWMFYYKPYINGIEVSHRDQLLPLLNYGDILKNISTTMQERFTRPPPRF
                     NQATLLEQMEKHNIGTKATRADIISTLFKRNYISNVTKSYQAENTKNEQQRQEVDAAG
                     GGIEATEIGFEIIESMRKHIPEIVSLDLTRSTELQLDGIESGRMKSAVVLENAIDKLK
                     QTVTSFKRNEIEIGQQITDALTVTRKRQQQKKDKKDKKKLVATLGLCPVCSNGQLNII
                     RSSRTKKRFVGCSNYKSGKCKVIAPLPQSGSIQSTGKKCTACQWPVMKITDINHTSQF
                     WTACVNSCCPSKNRK"
BASE COUNT          597 a          414 c          386 g          778 t
ORIGIN      
        1 aacaacacgg ctaagaaaag cattcccttg gctgctaggt cacaattttt caatattgaa
       61 ttaaatcttc cttccgatat tataaatggc ttgaggaata atcagtgtgt agattgctgt
      121 tatggcattc actagaagac caacagcttg agtgatatag aagattatta tgctccaaaa
      181 taatattaat aacaataata aaaatataga actggtcttg tgtcatcaat ctgtgtctta
      241 caatttgagt ataggtgtat actgaatgga tcaataaatg caatttgttg cacccaaata
      301 tttctcgtaa tgtaaaatgt attgcttagg tagagaatga tgcaataata cttttaacta
      361 aattcgtcta cattacattt ctgttattat aataactaga agattgtaga taagtaaact
      421 agtattatta ttttctattt tttgaggggc agcaactatt aacacaggct gtccaaaatt
      481 gactagtatg attaatatct gtgatcttca taaccggcca ttgacacgca gtacatttct
      541 taccagtgct ctgaattgat ccactttgtg gcagtggagc tattacttta catttgcctg
      601 acttgtaatt ggaacagccg acgaacctct tctttgtcct acttgatctt atgatattta
      661 attgtccatt gctgcaaaca ggacagagtc ctaatgttgc caccaatttc ttcttgtcct
      721 tcttgtcctt cttctgctgc tgtcgcttgc gagtaaccgt tagcgcatca gttatctgtt
      781 ggcctatctc aatctcattt ctcttaaaag aagtaacggt ttgttttaat ttatcaatcg
      841 cattttctaa taccactgcg cttttcatcc tacctgattc aattccgtct agctgtaatt
      901 ctgtagatct cgtaaggtct aaggatacta tttctggtat gtgctttcgc atggattcta
      961 ttatctcaaa tccaatctcg gtagcctcga ttcctcctcc tgctgcatct acttcttgcc
     1021 tttgttgttc attctttgtg ttctcagctt gataactttt ggtaacattg ctgatgtaat
     1081 ttctcttaaa aagtgtgctg ataatatctg ccctagtagc ctttgttccg atattgtgtt
     1141 tttccatttg ttctagtaat gtcgcttgat tgaacctggg tggtggtcta gtgaatcttt
     1201 cctgcattgt tgtactaatg ttctttaaaa tatcgccata gtttaaaagt ggtaataatt
     1261 gatccctgtg actcacttct attccgttaa tatatggttt ataataaaac atccagcctt
     1321 cgtagatagt tttacttgca tgcgattcaa acaggtagtg gttcttaacc tggatagttg
     1381 cacttgtcag acatgtcata gaaggtttac cgaatgcagc aaagaacctt ttgattataa
     1441 gatcaaatat cttgagttct gctatgtcaa gcttacttgt aggcttttct ccagtaggat
     1501 aaattgcagg atgcgccgga tcagttttac tgccttcaat tggcgaaaga tgagtctgag
     1561 atagcagact catagctaaa ttcttgtaac aactctgatc agcatcacta ctcttattat
     1621 catcagtggt atcatacggt ccaaataagc taatctttga tacacccaaa ataatcttct
     1681 tatagtctat ggaaggtgga atcttttggc ttgaagttct gggatacgaa ataagagctc
     1741 tgaggtacaa tttctcagca attttcagtg taaagctagg agagaacttg aatactctgt
     1801 atgcttctct ctgtagatct cccagattaa aaggagcaga agctttacgt gaaatcatct
     1861 gagtcttaat ttccgttatc ctgccacttt ggcctgtaca tgctttgact atcgatgtag
     1921 cttcagacaa gctcattact ttctgctcgc agtattgtgc ctcaattagc tgatcgtttt
     1981 tttcaaattc tgcatggata ttccaatacg ggactgggat atgttttctt atctctgtct
     2041 ccttgtccac tacaaaagca agagtcgggc cttgtactct gcctattgat agattgtaat
     2101 accttttgcc attattgcta ttcttaaaag attgtgtaag tgctctagag aggttaactc
     2161 cataaaaaaa atcaa
//
LOCUS       DASQSJ010000203         5289 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_24236, whole genome shotgun sequence.
ACCESSION   DASQSJ010000203 DASQSJ010000000
VERSION     DASQSJ010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5289
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24236"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..162)
                     /locus_tag="VE223_03960"
     CDS             complement(<1..162)
                     /locus_tag="VE223_03960"
                     /inference="COORDINATES: protein motif:HMM:NF020090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HZC20780.1"
                     /translation="MQSQIKTYCIIGDPVQHALSPAMQNAAFKSLGLNCTYIAFRVPK
                     GELQESVSSL"
     gene            complement(347..1228)
                     /locus_tag="VE223_03965"
     CDS             complement(347..1228)
                     /locus_tag="VE223_03965"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HZC20781.1"
                     /translation="MLVQQNLIDTIIAGDCKQVLSRIPSDSIQLTITSPPYGNAIDYD
                     MHVSGNQAYYRGKTKQETGDYVDEMVEVFNEMIYRATKDGGYCCIVIANEVVNGTLQP
                     LPHMLLSKLVKPFGNWNLHEEIIWHKVTGGTNRYGSFVINPYPKYYRANIMHEFILVL
                     RKGDVNSGRTQRQETLPARHEEWTKEIANSVWHIAPVPPGFIEHPCPFPEEIPYRLMK
                     LYSYEGDTVVDPFIGSGQTSKVAFHFRRHYIGIDIVEEYVRLARSRLVDEPLHIRSEA
                     LIANWKKIPSHYFCLRR"
     gene            complement(1333..2382)
                     /locus_tag="VE223_03970"
     CDS             complement(1333..2382)
                     /locus_tag="VE223_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HZC20782.1"
                     /translation="MSRELIIKPTVSEADLDDFLSSLKGVTFLNIDPKLVLGKSFKTI
                     FESQDADEVICRTIDELKKAQTSGKVSGYFRKVLNNQDIDAIIQAVESGTDFVVVEAF
                     DWKIIPLENIIAKLHRSRTKIYATAKDASEVRTMLGVLEVGVDGVVLSTNNVNEVNEC
                     RKYLETAIFPIQSARIVNIKDVGTGERVCVDTVSILKKGEGMLIGSRSNFMFLVHNES
                     VGSSFTSPRPFRVNAGAVYCYTITPDGNTKYLSEIESGTEILIVNKEGSSRRAAVGRS
                     KIETRPLRLIRASIGDETGTIILQNAETIQFITNDGRLIPITEVKVGDEVLACTKTSS
                     GRHFGLEVKEFILEK"
     gene            complement(2375..3166)
                     /locus_tag="VE223_03975"
     CDS             complement(2375..3166)
                     /locus_tag="VE223_03975"
                     /EC_number="2.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate
                     synthase"
                     /protein_id="HZC20783.1"
                     /translation="MVFGRDIRLNRILKKGRMLCIPMDHGISNGPISGLQDIHSVIYQ
                     NENSGLTCILVNKGIIKTLPRPTNIGLIVHLSGSTSIGPSPNRKMLIGSVEEALRLGA
                     DAVSVHINIGAKEEPEMLHKLGIISDKCDQWSIPLVAMMYPRGEKIKNQYDPEVVAHT
                     ARIGAEAGADIVKSVYTGDADSFKRVTKSCPVPIVIAGGPKADTDREIIEMCFGAMEA
                     GAKGVTFGRNIFQHRNPPAIIHALSSIILDGKSPKEVLAHLDKNE"
     gene            complement(3233..4015)
                     /locus_tag="VE223_03980"
     CDS             complement(3233..4015)
                     /locus_tag="VE223_03980"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF010587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HZC20784.1"
                     /translation="MELQDIARVITDFITKEVEKRESHGVVVGLSGGLDSSIAASLAV
                     RALGANCVFALILPDSPITPKTDIYDAQQLAKNLKIKYKTIEIGTIKRKLLAVMPKNK
                     LAQGNFSSRLRMCIIYYYAGIMHRLVFGTSDKSEIKLGYYTKNGDGAADIFPIADLYK
                     TEVRQLARYLRLPVSIIEKKSSPRLWRGQTAEDEIGLNYEQIDEILRKLDANTLKKPK
                     SKSNPSTKNIQMIMDLIDSNKHKLEPAPICKLYEHNHDKNLL"
     gene            complement(4378..4824)
                     /locus_tag="VE223_03985"
     CDS             complement(4378..4824)
                     /locus_tag="VE223_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HZC20785.1"
                     /translation="MRILSELIRDASISVPQLSKKVNVNASVLYSRIKRLAKRQVIKK
                     FTVIVNEGILGINVKATVGINRDPKLKEPIHSELLKITEVRSLSEVTGRFDMIISINA
                     RTLEELHNIVIERIGKIEGIQNTETFVEMQRTEKEPLYAVQTSLSR"
     gene            complement(5084..>5289)
                     /locus_tag="VE223_03990"
     CDS             complement(5084..>5289)
                     /locus_tag="VE223_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20786.1"
                     /translation="DNPQLLFVLFRTSLLNPSSKYIIIMIFVFVYLTTFDPGILTLHL
                     HQLTGYDVDNVAKKDLLLTYIIS"
BASE COUNT         1519 a         1060 c          907 g         1803 t
ORIGIN      
        1 gagtgaagaa accgattctt gtagttctcc ttttggaacc ctaaaggcta tgtaagtaca
       61 atttagacca agcgatttga acgctgcatt ttgcatagcc ggagacagag catgttgaac
      121 aggatctcct attatacaat atgtcttaat ttgactttgc atatgattta tacaacaata
      181 aacatctatg aacttttgat gatcccggat aatttgctac tacagatacg cagatcttaa
      241 ccaatatagc ctataatggg cactgataaa ttaatccttt tcaattgaca gaaactatta
      301 ttcgtacctt tgtcgtgtaa actgtagcac atatgatgat gtcagattac ctacgcaaac
      361 agaagtaatg agatggaatt tttttccagt ttgcaatcaa tgcttctgat ctaatgtgca
      421 ggggctcatc aacaagccgt gaccttgcta gtctgacgta ctcttcaact atgtctatac
      481 ctatgtagtg tcggcggaaa tgaaaagcta ctttcgaagt ttgtccactg ccaatgaaag
      541 ggtcaaccac agtatctcct tcataagaat aaagtttcat cagtctataa gggatctctt
      601 cgggaaatgg gcatgggtgt tcaataaaac ctggaggtac cggagcgatg tgccaaacag
      661 aattcgcaat ctcctttgtc cactcttcat gtcttgcagg aagagtttct tgacgttgag
      721 ttctaccact gttcacatct ccttttctta ataccaaaat gaattcatgc attatattgg
      781 ccctataata ttttggataa gggttaatga caaatgagcc atatctgttt gttccaccag
      841 taaccttatg ccaaataatt tcttcatgta aattccaatt gccaaatggc ttgacaagct
      901 tggataataa catatgagga agtggttgaa gtgttccatt gacaacctca ttagcaatga
      961 cgatacaaca atatccacca tcttttgttg ctcgataaat catctcatta aaaacctcca
     1021 ccatctcgtc aacgtagtcc ccagtttcct gttttgtttt tccgcggtaa taggcttgat
     1081 ttcctgaaac atgcatatca tagtcaatag catttccata gggaggcgag gtaattgtca
     1141 gctgaatcga atctgatggg atccttgata gtacctgttt gcaatcaccg gcgattatcg
     1201 tgtcaattag gttttgttga actagcattc aacgtttaat acgtgctgtc tccatattca
     1261 gaatacttta aaataataaa cttcgtgata aataaaaatc atttttgtat tacactgatt
     1321 tcgaacaata cattattttt ccaatatgaa ttctttgacc tctaacccga aatgtcgacc
     1381 agaagacgtc tttgtgcaag ctaacacctc gtctccaact ttgacttcgg ttatgggtat
     1441 caatctgcca tcgttcgtta tgaattgtat agtttctgca ttttgtaata ttattgtccc
     1501 tgtctcatca ccaattgaag ctcttatcaa tcttaatggt cgtgtctcaa ttttcgacct
     1561 cccaacggct gcgcgtctag aagatccctc tttatttact atgagtatct ctgtaccgga
     1621 ttcaatttct gagagatact tggtattccc gtcaggtgtt attgtataac aatagacggc
     1681 accagcgtta actctaaatg gtcttggaga ggtaaaggaa gatcctacag actcattatg
     1741 cacaagaaac ataaagttag atctgcttcc gatcaacatt ccttcacctt ttttaaggat
     1801 cgagacagta tctacgcaaa ccctttctcc tgttcccaca tcctttatgt taacaattct
     1861 ggcgctctga attggaaata ttgcagtttc cagatatttt ctgcattcat ttacttcgtt
     1921 gacattattt gttgacaata caacgccgtc aactccgact tctaaaactc caagcatagt
     1981 ccttacctcg cttgcatctt tggcggtcgc atatatcttg gttctagatc tgtggagttt
     2041 agcaataata ttttcgaggg gaataatttt ccaatcgaag gcttctacca cgacaaaatc
     2101 cgtacctgat tcaacggcct gtataattgc atctatatct tgattgttta acacttttct
     2161 aaaatatcct gaaactttgc ctgatgtttg agctttcttt aattcgtcaa ttgtccgaca
     2221 aatcacttca tcagcgtctt gagattcgaa aatagtttta aatgactttc ctaacactaa
     2281 tttaggatcg atattcaaaa atgtaacacc ttttagactt gaaagaaaat catccaaatc
     2341 agcttctgaa accgttggtt taattattag ctctctactc atttttgtca aggtgtgcta
     2401 agacctcttt tggacttttg ccgtctaaaa taatactgct taaagcatgt atgatagcag
     2461 gaggatttcg atgctggaaa atattcctgc caaaggtaac tcctttcgca cctgcttcca
     2521 ttgctccaaa acacatttcg atgatttctc tatcagtatc tgcctttggc ccgcctgcta
     2581 ttacaatggg tacaggacag ctcttggtaa ctcttttaaa ggaatcagcg tcgcctgtat
     2641 aaactgattt gacaatatca gctccagcct ctgctcctat tctagcagtg tgagcaacta
     2701 cttctggatc atattggttc ttgatttttt cacctctcgg atacatcatt gccaccaagg
     2761 gaatgctcca ttgatcacat ttgtcggaaa ttatgcccaa tttatgtaac atttcgggtt
     2821 cttcctttgc tccaatattg atatgaacag atactgcatc tgcacccaac cttaaagctt
     2881 cttcaacgct tcctattaac atcttcctgt tcggcgaggg gccaattgaa gtgctaccag
     2941 agagatgaac tattagacca atattagttg gtctgggcaa tgtcttaatg atgcctttat
     3001 tgactagaat acatgtaagc cctgagtttt cgttttgata aatgacagag tgtatatctt
     3061 gtagaccaga aatgggacca ttactaatgc catgatccat aggtatgcag agcatcctac
     3121 ctttctttaa tattctgtta agtcgaatgt ctctgccaaa aaccatgtct aagagagcat
     3181 cttgtaatcc tacttaaaag tgatatgctt tgataaactt aagtctattg ctctataata
     3241 aatttttatc atgattgtgt tcatacagtt tacaaatagg tgcaggttcg agtttgtgtt
     3301 tgttactgtc aataaggtcc attatcattt gaatattttt agtactggga tttgattttg
     3361 atttcggttt cttcaaagtg tttgcatcaa gcttccttag tatctcgtct atttgttcat
     3421 aattcaaacc aatttcatct tctgctgttt ggcccctcca taaacgggga ctactttttt
     3481 tttctataat cgaaacagga agtcgcaagt atcttgctag ctgtcttacc tctgttttat
     3541 acaggtcagc tatagggaaa atatccgcgg ccccgtcacc gtttttggta taatacccta
     3601 attttatttc gcttttgtcc gatgttccaa aaactaatct atgcattata ccagcataat
     3661 aataaattat acacattctt aatctcgaag aaaaattccc ctgtgcgagt ttgttctttg
     3721 gcatcactgc taataacttt ctttttatcg ttccaatctc aatagtcttg tattttattt
     3781 ttagattctt tgctaattgc tgtgcatcat atatatcagt cttgggagtg attggtgagt
     3841 ctggcaagat taatgcaaag acgcaattag ctccaagtgc ccttacagct aggctagccg
     3901 ctatagaaga atcaagaccc ccactgagac ccacaacaac accatgtgat tccctttttt
     3961 ctacttcctt ggttataaaa tctgttataa ctctggctat atcctgcagt tccattgagt
     4021 aagagtgtct atacaagcga atttatatta aatgtaatta attcatgtaa agcttagata
     4081 ggtatgagcc tattgagatc gtccggtgaa gctaataaac tccgcaatta acttaataac
     4141 gaaagcaatt cctccaacaa cacccattcc tagaagtact agacgcaaat gtgtcatata
     4201 atcgtccttg cttgtcttct tagcaagctt caatgtctgg aacatttcca agaccttatg
     4261 ctcaatgaaa gacaacttga tttaagagga tttattttga gggtaatttg aacttactga
     4321 tcataaaatg tttttatgct gtcaatatag ccttagagag tttgtcatac ggtcatttta
     4381 tcttgaaaga gatgtctgaa ctgcatataa tggttctttt tctgtcctct gcatctctac
     4441 aaacgtctca gtattttgga ttccttctat tttgccaata cgctcaatga ctatgttatg
     4501 taactcttca agtgtacgtg cattgataga tataatcatg tcaaatctgc cggtaacctc
     4561 tgataaagat ctgacctctg tgatttttaa aagttcagaa tgaattggtt cttttaattt
     4621 gggatctcta ttaataccta ctgttgcctt gacgttgatt ccgagaatac cttcattgac
     4681 tataactgta aattttttta taacttgccg ttttgcaaga cgttttatcc tactgtaaag
     4741 aacagatgca ttaacattta cttttttgct caactgaggc acggaaatac ttgcatctcg
     4801 tattagttca gataatatcc tcatatctaa ttcgtcaaat ctttgcaaat tatttctatt
     4861 taaaattagt agtctacgtt aataaatgta atttttgtat atttctcaaa caaaaaaggc
     4921 aatgacatgc attagttgat actgtcttga tatttccaat ccaatgtacc ctgagaatca
     4981 ggttctgcct ttctattttc ggaaatcgag aaatacggaa agagattctc tcgtgtgaac
     5041 gccagtggtt gccgtctgtt tcgaacgtag cgatggctag attctagctt attatatatg
     5101 taagtaaaag atctttttta gcaacattat caacatcgta acccgtcaat tgatgaagat
     5161 gcaatgtcaa tatccccgga tcgaacgtcg tcagatagac aaaaacgaaa atcataatta
     5221 ttatatattt tgaggaagga tttagaagag atgttcggaa gaggacgaat aaaagctggg
     5281 gattatctt
//
LOCUS       DASQSJ010000204         2769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_502020, whole genome shotgun sequence.
ACCESSION   DASQSJ010000204 DASQSJ010000000
VERSION     DASQSJ010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502020"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..454)
                     /locus_tag="VE223_03995"
     CDS             complement(<1..454)
                     /locus_tag="VE223_03995"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20787.1"
                     /translation="MVTDLKAFLVISIPSMLLFGIRHALDVDHITAIDNLVRMHNAKK
                     RARWVGTGFSTGHMISVLSEMLLIIYVIGSATSSKVHQLSFYGGVIGAIALATIGAVN
                     MYSMKRWGKTGSAILAGKIAGRTHILGPFGSALIIGLVFGLGFDTATQI"
     gene            877..1038
                     /locus_tag="VE223_04000"
     CDS             877..1038
                     /locus_tag="VE223_04000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20788.1"
                     /translation="MKKTNFLTNSEFPNTAESLMTHPSAANACPSTREFVMPWNNPAD
                     IDIVTKQMT"
     gene            complement(1435..>2769)
                     /locus_tag="VE223_04005"
     CDS             complement(1435..>2769)
                     /locus_tag="VE223_04005"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZC20789.1"
                     /translation="SSIPVAFLTLIRFLKNRNLFIEKDLRRIPNDPVIIFQITTRSAT
                     KTPVVKRGINSIIDSCLKIKYYDYMISVVSDDLEDINTLSYISDNCEIVVVDKKFVTY
                     AIKKARALQYAVEYRRKLGKNTSKYWIFHMDDESYATSQTILSLLKFIRESNAIASEG
                     PIFYPLKFESANFLTAIAESVRPFTCYDCVSQMTNPPPLHMHGSNLLVRSDIEDSIGW
                     NFGPTLAEDQFFGYKVYEKYGPKSLGWHGGILLEQPPLNIKDHFMQRRRWVLGSLQNI
                     SKFPLLHKFKMMFKLVTYFFGFVSGIVSIILYIYTQVPKLLMFNEIYQSVNPDVTLWI
                     DKLMNIFSSQSIVHTFANGSPIEVGVGSMLLFTSIMWLLSYQVGLFLNMQYSKIGWPK
                     KIFFHLQALVLCLVIGLIETFPAFWAMIEYCIKNKINKTKSIQIYDFYVINK"
BASE COUNT          889 a          535 c          451 g          894 t
ORIGIN      
        1 aaatctgagt tgcagtatca aatcccaaac caaataccaa acctatgata agagcagaac
       61 caaaaggtcc caatatgtga gtcctacctg ctatcttgcc agcaagaata gctgatcctg
      121 ttttgcccca ccttttcatt gaatacatat taacagctcc aattgttgct aaagcaatgg
      181 cccctattac accaccataa aatgaaagct ggtgtacctt actactcgtc gcgctaccta
      241 ttacatatat tatcaaaagc atttcagata atacagatat catatgacct gtactgaaac
      301 cagtacccac ccatcgagct cttttttttg cattatgcat cctaacaagg ttatcaattg
      361 cagtaatatg gtcaacatca agtgcatgac gtatcccaaa caagagcatt gaaggaattg
      421 atatgacaag aaacgccttt agatccgtta ccattttgag tgattactcc gaatattatt
      481 acataacatc atttgtatta ctaattttta gaaaggtaat aaataaagtt ttttaattcc
      541 agtggtgtag agtgaaaaag taagaattca ccatataaaa cgaactccta atcttcacat
      601 cgatgaattt gagctcagat tctcccagac atattcatcg taattacaat tctaccccac
      661 cttctaatgt tgtgtatatg taaccgtatt agtttgattt gagtcattaa agttttccac
      721 agtatatcta atgaacgctt caattagttc ccatgactct tttgtaaaag tacaaataac
      781 gaagttacta ttgtatcaga aaggtaacat gtgtatatga tcggacttta gttattttag
      841 cgattaattt atttatattc ttatctaatc tttagaatga agaagactaa ttttctaact
      901 aatagtgaat ttccaaacac cgcagaatcg cttatgaccc atccaagcgc tgctaatgct
      961 tgtccaagta caagagaatt tgtaatgcca tggaacaatc cagcagacat tgatattgta
     1021 acaaaacaaa tgacatagat aaattctgtt ttacttttct catggaattt ggcctaacct
     1081 caaagtatac agaatttgcg tatgtcactt catacgtatt atgtgtcctg atgacaatgg
     1141 agcgtgagtt ccacaaccta ttgctatcaa ttcaggcgca tcatttatac catctccaac
     1201 cattacggct ttcgtcggtc ttgtagcatt tcaatttcaa gcctttgttt caggcgatac
     1261 ctgggatgag accatcatta tgccaagttt attagcagtg gtgttggcag ttctgtcatt
     1321 gtctatgccc ataaccatga cgtccttctt tttcatattg tgtcggatct ccaattactt
     1381 gttttgcatt ttctctcaac gtataagata ctgctaacaa accaactaca tctattattt
     1441 attaatgaca taaaaatcat aaatttggat tgattttgtc ttattaattt tattcttaat
     1501 gcaatattca atcattgccc agaatgctgg aaatgtttca atcagtccta ttactagaca
     1561 taacacaaga gcctgcaaat gaaaaaatat cttttttggc cagccgatct tcgagtactg
     1621 catatttagg aacagcccta cctgatatga caacaaccac atgatagagg tgaacagtaa
     1681 cattgaaccg acaccaactt cgatagggct accgtttgcg aatgtatgca ctatcgattg
     1741 ggacgaaaaa atattcatta atttgtcaat ccacaaggtt acatcaggat taacactttg
     1801 gtaaatttca ttaaacatta gcagttttgg aacttgtgta taaatataaa gaattatcga
     1861 aacaatacct gatacaaaac caaaaaaata tgtcactaac ttaaacatca tcttgaattt
     1921 atgtagcaga ggaaatttgc ttatgttttg tagactccct agaacccatc tgcgcctttg
     1981 cataaaatga tctttaatat tcagtggagg ctgctcaagc agtatcccgc cgtgccagcc
     2041 taaggatttg gggccgtatt tctcgtaaac tttataaccg aaaaactggt cttcagcgag
     2101 agtaggtcca aaattccagc caatagagtc ttctatgtct gatctgacta acagattact
     2161 tccatgcatg tgtaagggag gagggtttgt catttgagac acacaatcat aacatgtgaa
     2221 tggccttact gactcagcaa ttgctgttaa aaaatttgct gattcaaact tcagagggta
     2281 aaagattgga ccttcagatg caattgcatt actttctcta ataaacttaa ggagagaaag
     2341 aatggtttgg cttgttgcat aactctcatc atccatatga aatatccaat attttgatgt
     2401 gttcttccca agcttacgac gatattctac agcatattgt aaagctcgtg ccttcttgat
     2461 tgcataagtc acaaattttt tatctactac aacgatctcg cagttatcac tgatataact
     2521 taatgtattg atatcctcca agtcgtcact aacgacggaa atcatataat catagtattt
     2581 tattttgagg caagaatcta ttattgagtt gattcctctt tttacaacag gtgtcttggt
     2641 tgcagaacga gtggttattt gaaatattat tactggatca ttaggaatac gtcgaagatc
     2701 cttttcaatg aaaaggtttc gattttttaa gaaccttatt aaggttaaaa aggctaccgg
     2761 gattgacga
//
LOCUS       DASQSJ010000205         4393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_502093, whole genome shotgun sequence.
ACCESSION   DASQSJ010000205 DASQSJ010000000
VERSION     DASQSJ010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4393
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502093"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..798
                     /locus_tag="VE223_04010"
     CDS             196..798
                     /locus_tag="VE223_04010"
                     /inference="COORDINATES: protein motif:HMM:NF014061.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EMC3/TMCO1 family protein"
                     /protein_id="HZC20790.1"
                     /translation="MAYIDPIIIQLPGLVPHYTKHPVFHDMFTAMIAAALIAIALNFA
                     MAMLRKKTTDIEKMNRIMKETSLWRKQYTDAVKKRDKVAIEELKKRQAYVNKMTMEMQ
                     QQQMRPMLIYMMPSLLLWILVFPSIFGGTTAVSPIHIPWIMCNAQNVITDTQLDNNGN
                     HKGPCTMPGEVYLFGWFLITNFAFSGIISKVTKTGTPSIM"
     gene            complement(936..1556)
                     /locus_tag="VE223_04015"
     CDS             complement(936..1556)
                     /locus_tag="VE223_04015"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HZC20791.1"
                     /translation="MENTIMKWTLNDFTKSGFGKLLKSFENSTDDLVKTTRAFGIAIK
                     AHTGQFREENKLEPYINHPLKVALILTEELHRHNLDLICAALLHDIIEKSGSNMPMSE
                     DQLRKEFGENVYNIVRIVTKPKIIDDEKEKLLKEYFQNITRSSQSVRYIKLADHLDNL
                     RSLKNSVHKDKILRYKEETQKYVVPIAQKTDENLVFKLSVALYELK"
     gene            complement(2001..2408)
                     /locus_tag="VE223_04020"
     CDS             complement(2001..2408)
                     /locus_tag="VE223_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20792.1"
                     /translation="MVSKTKTKSRKKGKQTKGSKKSKTTLKKRSGIKKAGVKRTSSTV
                     ARPKKVSPKRKKTTVPTSKIANPSEQEARILTEENMSSDQPSATGGTQIETEPGTSDI
                     IHNSGEEELTSRYTSDTGPEGQEEDVKDENSGM"
     gene            complement(2574..3251)
                     /locus_tag="VE223_04025"
     CDS             complement(2574..3251)
                     /locus_tag="VE223_04025"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HZC20793.1"
                     /translation="MDSKGYYALLGVSERASYQEIKRAYRGLARKYHPDRNSSSFAED
                     MIKKINASFEVLSDKEKRREYDTTGLNAIQFDKTDSNNNDNHNRTHDQVQRDSFDNGT
                     GNGSVHSDYNADYHNYYETKEIENEGITDRSNYRMQHATITDLDTPKGRFHIIVEPSL
                     CMAFGSCETLAPKVFVIEKNKRINPKARIESEVGANIESILAAAQTCPTKAIKIIDRY
                     TGEQIFP"
     gene            3385..>4393
                     /locus_tag="VE223_04030"
     CDS             3385..>4393
                     /locus_tag="VE223_04030"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HZC20794.1"
                     /translation="MQSLEIDDSWSFKDASPSQTSYITHDYHRYPAKFIPQLAERIIK
                     ENSTVGDLICDPFMGSGTTLVEAIVNKRRAYGTDINPVSVLISKAKTTPIDPVFLKQE
                     LSSLLEKTKVTIANGHGEQRMLCIHTNDNFYTTVPDNERLDYWFPEKQKRDLAPILSI
                     INAVEDQNVRIFLLCSFSNILKRCSRWMSKSTKPTIDRDKIIADAYKSFQNQIEKMAA
                     KNEKFWNMLVDGGEDTIIVDCVVDNTDARKLKINDDSVTLVITSPPYVTSYEYADLHQ
                     LTSIWLGYIDNLPEFRSKFIGSIQKDIKSINLYSKTGKETVGRLRSINKREAKGVEQY
                     FF"
BASE COUNT         1339 a          799 c          774 g         1481 t
ORIGIN      
        1 ttgtagaaca tttattattc cttacgagaa tggccatagt cgtcacaagt gaaaatggta
       61 acaataattg ctatctacat agtcaaaggc tattcagaag tatcttaatg tcttattgtt
      121 gtgtgaaact taagaaaaaa ttataagaca tatcttgaga tacgctggat attgttagga
      181 gatagattgt gaacaatggc ttacattgat ccaataataa tacagctgcc tggattggtc
      241 cctcactata ccaagcatcc cgtttttcat gatatgttta cggccatgat tgcggctgca
      301 ttaatcgcaa ttgcattaaa ctttgctatg gcaatgctac gtaagaagac gaccgacatt
      361 gaaaagatga acagaattat gaaagaaacc tctctgtgga gaaaacagta tactgacgca
      421 gtaaaaaaac gcgataaagt agccatagaa gaactcaaaa aaagacaagc ttatgtcaac
      481 aagatgacta tggaaatgca acagcagcag atgcgtccaa tgttaatcta tatgatgcct
      541 tctctactgc tctggatatt ggtgttccct agtatatttg gaggaacaac agctgtttca
      601 cccatacaca ttccatggat aatgtgtaac gctcaaaatg tgattacaga tacgcaacta
      661 gataataatg gcaaccacaa gggtccttgt acaatgccag gcgaagtgta tctttttgga
      721 tggtttctta tcactaattt tgcgttcagt ggaataatat ccaaagttac aaaaactggt
      781 acgcctagta taatgtaacc tagtctatct ggttcaacct gctctattgc atatgctgag
      841 aatttgtgcc tacctgaaga tcataagata tggataaaga attataatgg tggtatgaga
      901 tcgaaaataa aatgacagaa acaaatgttt tttccttatt taagttcgta caaggcaact
      961 gataatttaa atacaagatt ttcatctgtc ttttgcgcta tagggacaac atacttctga
     1021 gtttcttctt tgtatcttaa tattttatcc ttgtgaaccg aattcttaag ggatctaaga
     1081 ttatctagat gatctgccaa ttttatgtat cggacagatt gagaactcct tgtgatgttc
     1141 tggaaatact ccttcaataa tttctccttt tcatcatcta ttatttttgg ctttgttact
     1201 atacggacta tattgtacac attctcgccg aattcttttc gtaattgatc ctcagacatc
     1261 ggcatattgc tgccactttt ttctattata tcgtgcagaa gagcggcaca tattagatct
     1321 agattgtgtc tatgcagttc ttccgttaga ataagggcga ctttcaatgg atgattgata
     1381 tatggttcaa gcttattttc ctctctaaat tggcctgtat gagcctttat tgctatgcca
     1441 aatgctcttg tagtctttac gagatcatca gttgaattct caaacgactt tagtaacttt
     1501 ccaaatcctg atttagtaaa gtcattaagt gtccatttca ttatagtatt ttccaaatcc
     1561 tgtttatctc tatattgaag attctcttag aggatggttt ttgccaccct ttattttgac
     1621 tctactaatt ccttcctttt tacatttgct atctaccgac ttcattctat tgtttggaag
     1681 agtaattatc actatacctt cggatagaaa ccattattaa acaagttata tttgtttaaa
     1741 tttaatactt ctatcgctat tgcagactaa ttgcttatag acctaaatat caagtctaac
     1801 tgaaggaatc ataacacgac taaaactatg atatgagtgt ttacgtctac tatcaataaa
     1861 agtaatacat attgttacat atttgggaga gtcaacacca gagaagaatt actaatacag
     1921 aaccgaatta tccgcagcga tgatttacag ctccaaaagg attttatcta tatgttcata
     1981 gtataatttt atacttcctt ttacatgcca ctattttcat ctttgacatc ttcctcttgt
     2041 ccttctgggc cagtatcaga agtataacgc gacgtgagtt cttcctcacc actattatgt
     2101 ataatatcag atgttcctgg ctcagtttct atttgagttc cacctgtagc actaggttga
     2161 tccgatgaca tattttcctc agtcaaaatg cgagcttctt gttcagatgg gttggcaatt
     2221 ttggaagtcg gaacagttgt tttttttcgt tttggagaga ctttctttgg ccttgctact
     2281 gtcgaactag tcctttttac tccagccttc tttatgccgc tccttttctt aagggtggtc
     2341 tttgattttt tagaaccttt tgtctgcttt cccttttttc ttgactttgt tttggtttta
     2401 ctgaccatat atagtagcag ttagcaaata cttgctctta tattaatcgg aagatgttga
     2461 taacatacgt taataaaata atttcctatt cttatatctt ctaatatatc gctagagata
     2521 tcatcttgca tttgatctta accaattaaa cgctgagata gtgtaaacca catctaggga
     2581 aaaatttgtt caccagtata tctgtctatt attttgattg cttttgtagg acatgtctgt
     2641 gctgcagcaa gtattgattc aatgtttgca ccaacttctg attcgatcct tgccttaggg
     2701 tttattcttt tgttcttttc gattacaaag acttttggtg caagagtttc gcagctgcca
     2761 aatgccatac aaagtgatgg ttcaacaatt atatgaaagc ggcctttggg agtatctaaa
     2821 tctgttattg ttgcatgttg catacgataa ttagacctgt cagtaatacc ttcattctct
     2881 atctctttag tttcatagta attatgataa tccgcattgt aatcagagtg cactgaacca
     2941 ttcccggtac cattgtcaaa tgaatcacgt tgaacttgat cgtgtgttct gttgtggtta
     3001 tcattgttat ttgagtcagt tttgtcaaat tgtatagcgt tcaatcctgt tgtatcatac
     3061 tctcgtctct tttctttatc tgaaagaact tcaaaagaag cattaatttt tttaatcata
     3121 tcctcggcga atgaagaact atttctatca ggatgatatt tccgagccag acctctgtat
     3181 gctctcttaa tttcttgata actggcacgc tctgagactc caagaagcgc ataatatcct
     3241 ttactgtcca aatagaatat agaagaggtt cgtgttactt attcgtttca tataatgaac
     3301 cggcgcaatt ataataaaaa ttaaacaatg ccattaaact aatattaatg tggacttgtt
     3361 ctagaattta gaatattgca atcagtgcag tctctagaga tagatgattc ttggtcgttt
     3421 aaagatgcta gtccaagcca gacctcttat attactcatg actatcatag ataccctgca
     3481 aaatttattc cacaattagc agagaggatc atcaaagaga acagcacagt aggagatctg
     3541 atttgtgatc cttttatggg ttctggaacc actttggtcg aggccatagt gaataaaaga
     3601 agggcgtatg gaacagacat taatccagtg tctgtactga taagcaaggc caaaaccact
     3661 cctattgacc cagtttttct aaagcaggaa ctttcctcat tattagagaa aacgaaagtc
     3721 accattgcta atggtcatgg agaacaacgg atgctatgta ttcacacaaa tgacaatttc
     3781 tatacaaccg tacctgataa tgaacgactc gactattggt ttccagagaa gcaaaagcga
     3841 gatttagcac ccatcctgtc tataattaat gcagtggagg atcaaaatgt gcgcatattt
     3901 ttactttgtt cattttctaa tattctcaaa agatgttcac gatggatgag caagtccaca
     3961 aagcctacaa tagatagaga caagattatt gcggatgcat acaaaagctt tcaaaaccag
     4021 atcgaaaaga tggcggcaaa aaatgaaaag ttttggaata tgcttgtcga tggaggagag
     4081 gatacgatca ttgtcgactg tgttgttgac aataccgatg cgcgaaaatt gaaaatcaat
     4141 gatgattctg ttacacttgt tatcacaagt ccaccttatg ttacttcata tgagtatgct
     4201 gaccttcatc aactgacttc aatatggtta ggatacatcg acaacctacc tgaatttaga
     4261 agcaaattca taggatcgat acagaaagac atcaaatcta tcaatctgta cagcaagaca
     4321 ggaaaagaaa cagttggtag acttcgatca ataaataaga gagaagccaa aggagttgag
     4381 caatatttct ttg
//
LOCUS       DASQSJ010000206         2322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_502108, whole genome shotgun sequence.
ACCESSION   DASQSJ010000206 DASQSJ010000000
VERSION     DASQSJ010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502108"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VE223_04035"
     CDS             <1..693
                     /locus_tag="VE223_04035"
                     /inference="COORDINATES: protein motif:HMM:NF017013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOFRL family protein"
                     /protein_id="HZC20795.1"
                     /translation="TPDSSTFKDATSILRKYNIWRKVQNSSVEEVINKGIQGIISDTP
                     KPGDPLFQNVSNILIGGNVLVCQQAKKYLKKHGLRAVYLGSSFDGEAKNFGALLAHLS
                     SIIKKRSRPFAFVLGGETTVKLNGTKNIGIGGRNQEAILAAALKSKLARDDDITILCM
                     GTDGIDGKSEAAGGFVTPKTVSMVRERERQMRKYLDNHDSYNALSRLRSLIVTGQTGT
                     NVNDISIVCRLK"
     gene            complement(695..1009)
                     /locus_tag="VE223_04040"
     CDS             complement(695..1009)
                     /locus_tag="VE223_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20796.1"
                     /translation="MSPPPIDAAEFDAHKDLSTLIVQFLCRNRDNGFSAKEIAQAVGI
                     REEDVNYAMLKLGMTDLISSITGGIMSKKQKFGSGRRAIKIEDVTVNGITYYRCLEDD
                     TV"
     gene            1151..2011
                     /locus_tag="VE223_04045"
     CDS             1151..2011
                     /locus_tag="VE223_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HZC20797.1"
                     /translation="MRAIRIRFLLASIIAVINGISVAFWKNGIFNLSYTILILAGVIC
                     LHASVDLLNDYWDYKRGTDVITRRTKFSGGTGVLPEKLLRPKTVYIAGVIFMTLGVLA
                     GTYFVVIRGITIAVILGFAIVTIYLYSINIVNAGLGEIFVAIKGMMIVLGTFYIQTGV
                     IDPSAIFIGVIIGILSASVLFVNSFPDYDADRYTGRRSLLTIIGKQNGSRLFPVPVLI
                     PYILILAGIFLGYTKFVSLACFASIPYAIKAIKDIDKYEDLSQFVPVMAATVTYARIT
                     GFMLAISLLF"
BASE COUNT          716 a          406 c          462 g          738 t
ORIGIN      
        1 acgcccgata gttcgacgtt caaggatgca acttctattc taagaaaata caatatttgg
       61 agaaaagttc aaaattcatc tgttgaagaa gtaataaata aagggataca aggaattatt
      121 agcgacacac caaagccggg agacccgctt tttcagaatg taagtaacat tttaatcggc
      181 gggaatgtac tcgtatgtca acaagccaaa aagtacttaa aaaagcacgg tttgcgagct
      241 gtatatttgg gttcgtcatt tgatggtgaa gcaaaaaatt ttggggcttt gcttgcacat
      301 ctatctagta tcattaaaaa aagatccagg ccatttgctt ttgttttagg aggcgagaca
      361 acggtaaaat tgaatggaac aaaaaatatc ggaatcggag gtagaaatca ggaggccata
      421 ttggcggcag ctttaaaatc gaaattagct cgcgatgatg atattactat tctttgtatg
      481 ggtacagatg gaatagatgg caaatcagaa gcggccggag gctttgtcac cccaaaaaca
      541 gtctccatgg tgagagaaag agaacgacaa atgagaaaat acctagataa ccatgacagc
      601 tacaacgccc tttcaagatt acgttcatta attgttactg gacagactgg aactaatgta
      661 aatgatatct ccatagtatg cagattaaaa tagtctagac tgtatcgtct tccaaacatc
      721 tataataggt tataccgtta accgtgacat cttctatttt tattgctctg cgcccgctgc
      781 caaatttttg ttttttagac atgattccac cagtaatact actaatgaga tcagtcatac
      841 ctagctttag catagcataa tttacgtcct cttctcttat gcctactgct tgtgcgatct
      901 cctttgctga aaaaccatta tccctatttc tacaaagaaa ttgaactatt aatgtgctca
      961 gatccttatg ggcgtcaaac tctgctgcat cgattggcgg tggagacata tcttatgttt
     1021 atcgaggagc tagttataac aatctaaagt taacgccgtc taacgtttat gatgaggacc
     1081 aaatattaat taataaacaa aatggattat gctcgattgg tacttgatta tccaagacat
     1141 aacaatatgg atgcgggcaa taaggatacg ttttttgctg gcttccataa ttgcagtcat
     1201 taatggtata tcagttgcat tttggaaaaa tggaatattt aacctttcat atactatact
     1261 aatcttggca ggtgtaatat gccttcacgc aagcgttgat ttgctaaatg actattggga
     1321 ttataagaga ggcactgatg ttattacaag aaggactaaa tttagcgggg gaacaggtgt
     1381 actgcctgaa aaacttctga gaccaaagac ggtctacata gcaggagtta tttttatgac
     1441 gctaggagtt ctcgcaggta cctatttcgt tgttatcaga gggatcacga ttgcagttat
     1501 acttggattt gcaatagtga cgatttacct ttattctata aacatagtca atgctggttt
     1561 gggcgaaatt tttgttgcaa tcaaaggcat gatgattgta cttgggacat tttacattca
     1621 gactggagta attgatccat ccgcaatctt tatcggtgtt attattggaa ttttgtcggc
     1681 atctgttcta tttgttaatt cgtttcctga ttacgatgca gatagatata ctggtagacg
     1741 ttcgcttctc acaataatag ggaagcaaaa tggaagccgg ttatttccag tcccagtcct
     1801 gattccatat attttgattc tagcgggcat ttttcttgga tatacaaaat ttgtatcttt
     1861 ggcttgcttt gcctccattc catacgctat taaggccatc aaagatatag ataaatatga
     1921 agatctaagt caatttgtgc ctgttatggc tgcaaccgtt acgtatgcaa ggattacagg
     1981 gttcatgttg gcgattagct tattattcta agcagttgtt tcaataatta tgatctgtaa
     2041 ccgatttcgt agttcacctt tcaagaacaa gagattgatt cagatctcaa tataggttca
     2101 tgttctcaca agatttgtag gcaatcaaga aaagttcaag caagcagcaa aagttgtgat
     2161 tcactacttt tatgatgtat agatcatcgc acaagcgagt ctttgaaaag catactttta
     2221 tttatttttc ttggaacttc atcctcgatt aatatgccag ctaagttacg ctcacgggga
     2281 atccatacaa agaatggctt attttccata ttatctatga tg
//
LOCUS       DASQSJ010000207         3819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_369485, whole genome shotgun sequence.
ACCESSION   DASQSJ010000207 DASQSJ010000000
VERSION     DASQSJ010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369485"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..678)
                     /locus_tag="VE223_04050"
     CDS             complement(<1..678)
                     /locus_tag="VE223_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20798.1"
                     /translation="MSLLLKDRVWVMLSGVAKRGIFPLHASKMGVFRIPTEITERSDI
                     SSISNDLKNSGFKIDTYADRIYITYKWNESSIDPTTQKDLTAELHVTVEVVTGEVVDI
                     IYQIKPLEFFGDPYWVRNYRQKANQNCKMIIDTVIRNTKIGDKLIAHYQKAEKLSFES
                     AVEKLESLTPLAKNPKVRSVTTTPSSGLSVATESPAPPAPAAITSTVSAAAAPAAAAA
                     GGGNTTIS"
     gene            complement(718..1029)
                     /locus_tag="VE223_04055"
     CDS             complement(718..1029)
                     /locus_tag="VE223_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20799.1"
                     /translation="MQQGRPFVKKGQFYFIYEGNDSNLILEDKTKRGLEVRERSFDDK
                     YGVEAEKGMIHDGDGIGHRVGIRWYFPKAKYSLQRVAEIAEELESKYAAIRELTCPDD
                     V"
     gene            complement(1053..1910)
                     /locus_tag="VE223_04060"
     CDS             complement(1053..1910)
                     /locus_tag="VE223_04060"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HZC20800.1"
                     /translation="MSYETYSHPEVLCETDWVANNINNPNIRILEVDYDPENAYRQGH
                     LPSAYLVWWRKDINDQSRRDIIDKQKFEALMSKVGATPETEIILYGDFNNWFAAFALW
                     VFHYYGHKKIKLMNGGRKKWELEKRNYTKDEPAPQSSKYSAKPPDEGIRAYLPDVRRA
                     IERLNETVLVDVRSPKEFSGEITAPPEYPTEHAQRGGHIPGANNIPWAQAVRESDGTF
                     KSVKELKALYESKGVTADKEVICYCRIGERSSHSWFVLKYLLGYPSVRNYDGSWTEWG
                     NMIGNPIEK"
     gene            2213..2311
                     /locus_tag="VE223_04065"
     tRNA            join(2213..2249,2275..2311)
                     /locus_tag="VE223_04065"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2247..2249,aa:Ala,seq:tgc)
     gene            2664..3296
                     /locus_tag="VE223_04070"
     CDS             2664..3296
                     /locus_tag="VE223_04070"
                     /inference="COORDINATES: protein motif:HMM:NF016382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease V"
                     /protein_id="HZC20801.1"
                     /translation="MTSLSLYADTIRLQKEIAKKVITYDIFDNEIKHVCGIDVSYKKD
                     IAYCSAAVIEKNTLKLVECVNVKNTVKQPYIPGLFMLRESKPIINTLKFLKNHFELLL
                     IDGHGQLHPRRCGLACYIGVTMNKPTIGIAKSLLFGDVREDQFIEHDGVILGFIIKGE
                     GKKSIYVSIGHKLSLESSIRIVKQLTKSKEWIPEPLRIADISSKCHWNFV"
     gene            3384..3686
                     /locus_tag="VE223_04075"
     CDS             3384..3686
                     /locus_tag="VE223_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20802.1"
                     /translation="MSFFGGASNEKIDKSKYEHLTMSIRQTVLERAHHRCQKCSAKFS
                     ASVHPRFEHINGSLKDNRPANLRALCPACFKFVEKKENRKGIVGNVRNAFGGIFKK"
BASE COUNT         1203 a          735 c          673 g         1208 t
ORIGIN      
        1 ggaaatagtt gtattgccgc cgccagctgc tgcagcagca ggtgcagctg cggctgatac
       61 agttgaagta atagcagcag gtgctggagg agctggagat tctgttgcta cagaaagtcc
      121 agaagaaggt gtagtggtaa cgctcctcac ctttggattc tttgctaaag gagtcaatga
      181 ttctaacttc tctacagctg attcaaacga gagcttttct gccttttgat aatgagcaat
      241 caatttgtca ccaatctttg tgtttctgat aacagtatca ataatcatct tgcaattctg
      301 attagccttc tgcctataat ttcgcaccca ataaggatcg ccgaaaaact caagcggctt
      361 tatctgataa attatatcaa ctacctcacc tgtgacgact tctactgtaa catgtagttc
      421 agcagttaga tctttctggg ttgttggatc tatactgctc tcgttccatt tataagttat
      481 ataaatccta tctgcatatg tatcaatttt aaatccagag tttttcaaat cattgctaat
      541 acttgaaata tccgagcgtt ctgttatttc ggttgggatt ctgaaaacac ccattttgct
      601 agcatgtaac ggaaaaatac ctctttttgc aactccagat aacataaccc atacgcgatc
      661 tttaagaaga agagacatac gtgactgtac aagaaataag ggctaaaagc ttttcgttca
      721 tacatcgtct ggacaagtca attctctaat ggccgcgtat ttagattcta gctcttcagc
      781 gatttctgca acacgttgta atgaatattt tgctttagga aaataccatc tgattcccac
      841 cctgtgtcct ataccatccc cgtcatgaat cattcccttt tctgcttcga cgccatactt
      901 gtcatcaaag ctacgctctc gaacttccaa acctctcttg gttttatctt ccaatattaa
      961 attggaatcg ttcccttcgt aaatgaaata aaattgtccc ttttttacaa acggtctccc
     1021 ttgttgcatt aaaacatctt ataatacaag acttattttt ctatcggatt acctatcata
     1081 ttgccccatt cagtccatga accatcgtaa ttgcgtactg aaggataccc aagaaggtat
     1141 ttcaaaacaa accagctatg agaagatctt tcccctatcc tgcaatagca aattacctct
     1201 ttatctgcag tcacaccttt agactcgtac agagccttga gttctttcac acttttgaaa
     1261 gttccatctg actcccttac tgcttgagcc catggaatat tatttgctcc aggaatatgg
     1321 ccacctcttt gcgcatgttc tgttgggtat tctggtgggg cagtgatctc ccctgagaac
     1381 tcttttggag agcgaacatc tactagtacg gtttcgttta gtctttctat tgctctcctc
     1441 acatctggta aatatgcacg tataccctca tcaggaggct ttgcactgta ttttgaagat
     1501 tgtggagcag gctcatcttt tgtataattc cttttttcta gttcccattt tttcctaccg
     1561 ccattcatta atttgatttt tttatgtcca tagtaatgaa acacccataa tgcaaaagca
     1621 gcaaaccaat tgttgaaatc accgtatagt ataatttctg tttctggggt agctcctact
     1681 ttggacataa gagcttcaaa cttctgttta tcaattatgt cacgacggct ctggtcattg
     1741 atatcttttc tccaccaaac caaataggcc gatggtaaat ggccttgcct gtaagcattc
     1801 tccggatcat aatcaacttc aaggattctg atattcggat tgtttatgtt attcgcaacc
     1861 cagtcagttt cacacaatac ctcgggatga gaataggttt catatgacat aatgctaatt
     1921 ttactactta ctgcttaaaa aatatatgtc aaaatgaaaa aatcatgtaa aagtctctta
     1981 tcagctattc agtagaacta ccatggtttt gagctccatt taagagcttt attctacaag
     2041 aatttgaaca gttgaggtta ttaatcatat gtcatgaata atcatgctac gcaaatttaa
     2101 aagatagata gataacatat atccaatatt agtctaagga attaataata atttaaagaa
     2161 ttaaaaccat gtttaaaaca cttaaattat catcgtttgg gcataacttt gtgggccggt
     2221 agttaagtcc ggtagaatac ctgccttgca tgccatatta atacggcaga ggaaacgtag
     2281 gtggtcgtgg gttcaaatcc cacccggtcc acattgatat gttatttcac aggggatcta
     2341 tagagatgac aaaagagagc tgttagaagc agaatcaatc gttttcaaat gcaatcatcc
     2401 atcccatcta aaatgtttca atgtcaaaaa tggtttatca atacagacat agaatcatga
     2461 ccttttgctg catctatata caatctattg agttatacat acaaattcaa aggtgatacg
     2521 aattgcagga gatacttccc atttccaaga tgaattaagt aataagtgct ggaagaacct
     2581 ttgtaaatac attttgttta taaaaatgta tacgtagata ttacgacagg tagatattac
     2641 caccatgagc tgtccataca tcattgactt cattgtcact ttatgctgac accataaggt
     2701 tacaaaaaga aattgctaaa aaggtcatta catacgatat tttcgataac gaaataaagc
     2761 atgtatgcgg catagatgtc tcctacaaaa aagatatcgc atattgctca gcggcagtta
     2821 ttgagaagaa tactctaaaa ctagttgagt gtgtcaatgt caaaaatact gtaaagcaac
     2881 cttacatccc ggggctcttt atgttaagag aatccaaacc aataataaat acattgaaat
     2941 ttttaaaaaa tcattttgaa cttttgctta ttgatggaca tgggcaatta catcctagaa
     3001 gatgtggatt agcatgctac attggcgtaa cgatgaataa gcctaccata ggaatcgcaa
     3061 aatctctgct ttttggcgat gtaagagaag atcaatttat tgaacatgac ggagtcatcc
     3121 taggatttat aataaaaggc gaaggcaaga aatcgatcta tgtaagcatc ggtcacaaat
     3181 tgagtctaga atcatcaata agaattgtca aacaattaac taaaagtaaa gaatggattc
     3241 ccgaaccttt gcgaattgca gatatcagtt cgaaatgcca ctggaacttt gtataactca
     3301 ttaatttatt agatcttgct ataagcaaaa gctaacaata tttccgtaag aaataagttt
     3361 gggctgagtc attctgttag ttattgtcat tctttggtgg cgcttcaaat gagaaaattg
     3421 ataaaagtaa atatgagcat cttacaatga gcatacggca gactgtatta gaaagagctc
     3481 atcacagatg tcaaaagtgt tcagcgaaat ttagtgcaag cgtccatcct aggtttgagc
     3541 atatcaacgg ctctttgaaa gataatcgcc cagctaattt gcgagcgttg tgtccagcat
     3601 gtttcaaatt tgtagagaag aaagaaaatc gtaaaggaat tgttgggaat gtgcgtaacg
     3661 cttttggagg aatatttaag aagtaaaact caaaaaagag tatgtaattt ttgaatctta
     3721 tcaatagatc cagaaatcat caaatcaaac taaatgcttc atctctctgg ttcagcagat
     3781 aggcatttcg tacatgtaat tttattaaaa atacccagc
//
LOCUS       DASQSJ010000208         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_51306, whole genome shotgun sequence.
ACCESSION   DASQSJ010000208 DASQSJ010000000
VERSION     DASQSJ010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51306"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..560
                     /locus_tag="VE223_04080"
     CDS             228..560
                     /locus_tag="VE223_04080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20803.1"
                     /translation="MLRTQQMMRKNLIIESVDDIVGYFTQLGNHRSMFMVLLLVIEIG
                     IFSLDISTITINAQSYPSTASGSNHSNHTGNITGTSNNINSSNETRMGICVIGVRSPC
                     NGDSSQAK"
     gene            complement(735..1097)
                     /locus_tag="VE223_04085"
     CDS             complement(735..1097)
                     /locus_tag="VE223_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20804.1"
                     /translation="MEQTTLAANSINNNKFKECLTLKDITPQWFERLNKIINENGNDD
                     DIAYGLYSEINDYKRCIVGEAYGYDQSYAIQGTNRNCQECTAISGNFSYALRRYNNNH
                     KLKEIIDKFIKHWNEKHT"
     gene            complement(1640..2005)
                     /locus_tag="VE223_04090"
     CDS             complement(1640..2005)
                     /locus_tag="VE223_04090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20805.1"
                     /translation="MDNKDNNQKTDTSYGEKNEEIPLQQPTGIDWQKTIGTIVRSKDN
                     LDMGTVIQDDDTDYRTSYSLTIEYGDRQRFSIPKETIYKIDKEYDKTYIYTTLTENEI
                     LASGKDDPFYTSMRSYTGD"
BASE COUNT          645 a          414 c          382 g          802 t
ORIGIN      
        1 atttcctcct tgtcaaattg gtctttgaac acccaccaaa ttatcaataa tatcaagctc
       61 accatttgag tttgtatgga agaaggcagc accattcctg atccttttgg cttcttatat
      121 ttcaagctag gactacatta agaaatataa ttaatgatca atactaatat ggtagtacaa
      181 gaaaagtatt aatcttcact tcgatatatt tggatcgttt aattctgatg ctacgcacac
      241 aacaaatgat gagaaaaaat ctgataattg aatcggtaga cgatatcgtc ggctatttta
      301 ctcaattagg taaccatagg agcatgttta tggttttatt gttagtaatc gaaataggta
      361 tattttcgtt agatatatcg acaatcacga taaatgcaca atcatatcct agtactgctt
      421 ctggtagtaa tcatagtaac cacaccggca atattaccgg caccagtaat aatattaaca
      481 gtagcaacga gactcgcatg ggaatttgtg taataggcgt aaggagccct tgtaatggcg
      541 atagcagcca agctaaataa agacagctaa ccttataggc gccacactca gccagacctt
      601 tatcactagc gttttgtaat cttcaagatg cctcgaaggc acgaacctct atctatgtat
      661 atggctattt aaatatccgt aaaataagtc aaattcatcg tcaaatgatc tatgagtcaa
      721 ttagacaata ttgatcatgt atgtttttca ttccaatgct ttataaattt gtctataatt
      781 tctttgagtt tgtggttgtt attgtatcgt cttaatgcat atgaaaagtt accacttatt
      841 gcagtacatt cttgacaatt cctattagtt ccttgtatag cataggactg gtcataccca
      901 tatgcctctc ctactatgca tcttttataa tcattgattt cagagtataa tccatatgca
      961 atatcatcat cgttaccatt ttcgtttatt attttattta atctttcaaa ccattgtggt
     1021 gttatgtctt taagcgtaag gcattctttg aatttattat tattgattga attagcagca
     1081 agcgtagttt gttccatgtc ttttttggtg tagtcggaga ataaaatagt ataggattaa
     1141 aggatttgat atgcaaaacc gttataggat cttttggatt tgacctaaga taaacatgag
     1201 ttaatctgtt aggttatgta gcagagcaat caatccatag ccatgtgatc gtgtctttac
     1261 aaagtcgacc aattcatgac ttctgaatct taaatcttct atattgaaaa ctccagctag
     1321 tcgtcgaaag aagataggat tctcgatctc caggacttga ccacaacgac taagtatagc
     1381 tctgcttctg gagctatccc agaggaagca tatcttcttc atttcgttcg atgccatgaa
     1441 gtaaaaggag cgtggttcat ggactttttg tctttggtcc ttctcctcgt cattaggcga
     1501 tgcattatcg aattgcttct actttttacc acttgctcct ttttttctct tctatgcaaa
     1561 tgtactggag aaagaacttt ttcaagcagc caggctatat atgtatatgc acattgtatt
     1621 ttctacgaaa ttgttattat taatcaccgg tataggatct catagatgta taaaatgggt
     1681 catctttgcc gcttgcaagt atctcatttt cagttagtgt tgtatagata tacgtcttat
     1741 catactcctt atctatctta tatatggtct cctttggaat gctaaacctt tgacggtccc
     1801 cgtattcaat agtaagtgag tatgaagtcc gatagtctgt atcgtcatct tggatgactg
     1861 tgcccatatc caagttatcc ttacttcgta ctattgttcc tattgttttt tgccagtcta
     1921 tcccagtagg ttgctgcagt ggtatctctt cgttcttttc gccataagat gtatcggttt
     1981 tctggttgtt atctttatta tccacatgta tttacagttt gatcactata ttttctttgc
     2041 ttataccacg tatcagattt ggttaaatag atggctggcg catacttcat tagcaataaa
     2101 aatacaagac accggatcaa ttattgaatg ttcagaatca tgcctctctt gttgaccaat
     2161 agtaacctcc aaggaaagtt ctacaccatt gaatctttcc atctatgact ttggtaaatt
     2221 atattctatg gggtcttatc atg
//
LOCUS       DASQSJ010000209         2504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_290238, whole genome shotgun sequence.
ACCESSION   DASQSJ010000209 DASQSJ010000000
VERSION     DASQSJ010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2504
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290238"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(268..1404)
                     /locus_tag="VE223_04095"
     CDS             complement(268..1404)
                     /locus_tag="VE223_04095"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HZC20806.1"
                     /translation="MSSTIPINKPWIGEEERGEVLHVLEENTLTSAAKDGGKRVREFE
                     SLLRDYLKVKHVVAVNSGTTSLYAALLAVDIKQGDEVLLPSFTFVATANSVVATGAKP
                     VFVDINKDDFTMDVCDLKAKITNKSKAIIPVHLYGHPSDMDEIIEIGDKHSLDIIEDA
                     CQSLGSTYKEKQTGTMGVMGCFSLYASKVLTCGEGGAVATNNDNLADNLKMIRNHGMI
                     EGYDTRIFGLNFRLPELSAAIAKAQMNKLSKMLNLRRKNAELLTNLLAPITDKSKIKL
                     PTETDEKKFNWYLYTITFEKNNIRDKTKNNMTNDKFGVTVYYKPAVHKTPYYERLVPL
                     NKNDDLTKTEWASEHVLSLPVHPSVTNQDIERMAQSLKIHSLLH"
     gene            1690..1823
                     /locus_tag="VE223_04100"
     tRNA            join(1690..1755,1773..1823)
                     /locus_tag="VE223_04100"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1752..1754,aa:Ser,seq:tga)
BASE COUNT          749 a          488 c          412 g          855 t
ORIGIN      
        1 cctatagagg taataagaat ttataacata aaagtaagaa atgctcatta ttacaggctt
       61 tatagtttgt tacttttgtc tgtatatcag aattaactac ttcaagtcat attaccgtac
      121 ttaaattcta gacatatcag atctcataca aaaacatcaa tttaatgacc atcaatgtct
      181 tgatatccac taggacgtgt tgagttgtca gccccaggat acacaaggtt atataatatc
      241 ctccaactca ctggctcttt ccctgttcta atgtagaagt gagtgtattt ttaagctttg
      301 cgccatgcgc tcaatgtctt ggtttgtcac agatgggtgg acaggtaatg acagaacatg
      361 ttcactagcc cattctgtct tagtaaggtc atcatttttg ttcaatggca ctagcctctc
      421 ataatatggt gttttgtgaa ctgcaggctt atagtataca gtaacgccaa atttgtcatt
      481 tgtcatatta tttttggttt tgtctcttat attgttcttt tcaaatgtaa tagtgtagag
      541 ataccaattg aatttttttt catcagtttc tgttggtaat ttaattttgc ttttatcagt
      601 tataggagcg agcagatttg tcaatagttc tgcattcttt ctccttaaat ttagcatctt
      661 tgaaagtttg ttcatttgag ccttagcaat cgcagcactc agttctggca atctgaagtt
      721 aaggccgaaa attcgtgtat cataaccttc aatcatcccg tggtttctaa tcatctttag
      781 attatctgca agattatcat tatttgttgc aactgcacca ccttcgccac aggtcaatac
      841 tttgcttgca tacagactaa agcaacccat tacgcccatt gttcctgtct gtttctcctt
      901 gtatgtggaa ccaagtgact gacacgcatc ttctattata tctaatgagt gtttatcacc
      961 aatctcaata atttcatcca tatctgaagg atgaccatag agatgaactg gtataatagc
     1021 tttggactta ttcgtaatct ttgcttttaa atcacagaca tccatagtaa aatcatcctt
     1081 attaatatct acaaagacgg gtttcgcgcc agttgcaact acagagtttg cagtagcaac
     1141 aaatgtaaat gatggaagta aaacctcgtc accctgttta atatctactg caagtaatgc
     1201 cgcatacagt gatgtggttc cggaattaac tgctactaca tgttttacct tcagataatc
     1261 ccttaaaagg gattcaaact ctcttactct ctttccacca tctttggctg cagaagtgag
     1321 agtattttct tctaaaacat gcagtacttc acctctctct tcctcaccta tccacggctt
     1381 gttaattgga atcgtgcttg acatatttat tgaagacaag gaatattgac accattaaac
     1441 agcgatcgtc atattttacc atcctataac tgttcttata atagtaaaaa ttattaccat
     1501 actttatgca ccactacaaa tatacttaaa ttcacattat atcacatggt catgaagcta
     1561 gttatcgttc gcaatcatta taatcaactg ctagcagctc aaaagtaatt gctgtatgga
     1621 ttctaaataa tcatcaagag caagagcaat taacatataa tagtagggtt gaaacgtaat
     1681 ggaataagag cagatgtggc agagtggtct tctgttgttc ttaacaagag aacacaataa
     1741 tgcgtcggcc ttgagttgaa gtactaaaag taagccgatt cgccctcggg cgatcaggag
     1801 ttcaaatctc ctcatctgcg ccatttatat cattataaca atccaggata ttcttctagc
     1861 agacttgcca tactggttgc gtcttacttc ttgactagct tggacttact taattttaag
     1921 tctggccgtt ctttgaatgc ataaattttc aagaatttgg acaaatacta tccaattttt
     1981 gacgactttc ctcattacca aggtcaacaa tatggatgtt ggtcttgacc tttttggtaa
     2041 tatcaattct aatgcacctt ttgatgtgtc catgcaaatg gtcttctctt tataataaca
     2101 ataatttctc tacttcgtca aattttcttt taggctagtt aattcagcca cactacatgc
     2161 agaagatttc aactcgaaac agtgtgaaag ttatcccaag ctcacggtct gattttcata
     2221 tgatatgtgc taaaatgaaa ggccattctc taacccagta agacagtgat aggaaactgc
     2281 aacgtgaaat ggtagaaaaa ttgggaatac atatgaatat agagatattt atctccataa
     2341 gcactagaag tgggggctca ctggctttag ttcagagaaa ttatatgatt gaaaaatatc
     2401 cagaatatgt tgaaatctac tgttgattga tttagccatt cttccagtaa cgtacaattc
     2461 ctaccttctg cagaattcat tttattccct accatttcag ctat
//
LOCUS       DASQSJ010000210         6452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_51445, whole genome shotgun sequence.
ACCESSION   DASQSJ010000210 DASQSJ010000000
VERSION     DASQSJ010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6452
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51445"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VE223_04105"
     CDS             <1..454
                     /locus_tag="VE223_04105"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZC20807.1"
                     /translation="RSLTKSFGLAGLRVGYSICNPGLASRMSANSITWNVNGVAQMAA
                     IAALKDRSHLANARAVIKKERKYMQHRIEKKMQNFTPCKSDVNFFLIHLKKKNSIKVR
                     DSMLTKSGVLVRDCSTFTGMGHEYIRVAVKKHKENLILLDAMELVDNR"
     gene            451..1308
                     /locus_tag="VE223_04110"
     CDS             451..1308
                     /locus_tag="VE223_04110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HZC20808.1"
                     /translation="MTKAKLLMIQGTSSGAGKSTLVTAFCRIFNDKGYRVVPFKAQNM
                     SSNIYITNKTVGMISLAQAIQAIASRKNPDTRMNPILLKPLGDYRSRVILRGKYYSEM
                     HAKEYYERFVLQKGLSLILNALDSLRKENDIVIIEGAGSPAEINISKYDAANMLLAEK
                     VCAPVIICSDIERGGCFASIVGTMKLLKPIHNDLVKGFLINKFRGDISLLDPAIKSVE
                     KITRKQVLGVIPKLDFHLPEEDSLDSRRTNKQEQPRESWDGHINLLAKAVNKSINIQR
                     IMTKVIGLM"
     gene            1317..2294
                     /locus_tag="VE223_04115"
     CDS             1317..2294
                     /locus_tag="VE223_04115"
                     /inference="COORDINATES: protein motif:HMM:NF002281.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HZC20809.1"
                     /translation="MLSQDLLVALVGAIILDLLLGDPSNKYHPVAWLGRLIGFFVPKL
                     KDNNNYTKKERVKGIIFSNSLIIAFGIITHVGAISAVHVFGSIGLFMFSALILKITIA
                     IRGMEKHANAIMSSLERNDLLKAQHNLSAIVRRDTNNLDEQHVLSGTIECIGESVVDG
                     ITSPLFYYSFFGPAGSFAYRIINTLDSMIGYQDDYYKDIGWMSAILDSFANYIPARIT
                     AFLMIIVAKVIGADSKKSLETLKRDHNKTASINAGYPMATMAGALRIRLEKIGYYSIG
                     EEYEPSSIEKCKTAISIMKLTTFLFCIILSAPLITILYYAGWWRILFGL"
     gene            2284..3036
                     /gene="cobS"
                     /locus_tag="VE223_04120"
     CDS             2284..3036
                     /gene="cobS"
                     /locus_tag="VE223_04120"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HZC20810.1"
                     /translation="MVFKSMQAIISFLTIIPVPKPSIVDIDSIANKMHYFPLAGAMIG
                     SLIGGLAYGISFYLQPPLIGFFITGAFVIITGVQHTDALADFADGLMAKGSKDIKYKA
                     MHDPAVGSAGVSSIILYIMGMVISVSSFHHGIRLFTSIVAAEVIAKYVMVLQSYRGLS
                     AWEGFSSPFTRAMKDRRKILSATAVTLPIVYFFGGGYYAGPISLGVAVAIATIIQHVS
                     NKTLGGLSGDVIGASNELARLSSLIVLSSVTI"
     gene            3093..3707
                     /locus_tag="VE223_04125"
     CDS             3093..3707
                     /locus_tag="VE223_04125"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HZC20811.1"
                     /translation="MIAAIMCGGKGSRIKNSIDMEKPLLKLKGKTMIEIVLYALAESH
                     EFDKIIGVTSSNTPKTHAFVNCYLALLMTDLIKTEGRSYSKDLSIVLNKLKPATIFVV
                     PADLPLLSTRVVQKILSRYYAVSPCVSIVSDYKFVVNMGIKPSLVLNINSKEYCHTGI
                     SIIDSSKVMGFATLKEYYIIMNEKEIAVNVNTKEELEIAERLLG"
     gene            complement(3709..3906)
                     /locus_tag="VE223_04130"
     CDS             complement(3709..3906)
                     /locus_tag="VE223_04130"
                     /inference="COORDINATES: protein motif:HMM:NF013803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27e"
                     /protein_id="HZC20812.1"
                     /translation="MRKNNIMIPKPHSNFISVQCIQCGENRVIFSHTTTDIYCKSCGQ
                     LIANKSGSRANILGKILNSLD"
     gene            complement(3925..4218)
                     /locus_tag="VE223_04135"
     CDS             complement(3925..4218)
                     /locus_tag="VE223_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HZC20813.1"
                     /translation="MDLVSMKMQKELRKFCSKCKIHTVQAVAIYKKGKDRKVAEGARR
                     HAEDKKGYGGQKFPELKRTAKTTKKITLRYTCKSCQRKTMKEGMRIRKLEIQS"
     gene            complement(4869..6197)
                     /locus_tag="VE223_04140"
     CDS             complement(4869..6197)
                     /locus_tag="VE223_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC20814.1"
                     /translation="MQTHYNVAIIGGGILGTSIAYFLSSICSLKVLLIEQEKKVAFHT
                     SSRNTGRVHAPFLYDPAKKKLFAKAASLGYEMWYKYSNNKHLLFKQDGVLEVATDERG
                     IDRLQKYIEWGESNGLKQELDLKFLKGSEIKNFEPSVRGTAALYCSKDASVDYGSLTK
                     SLLQDCKSFGCSILLGYKVRKISRSTNDSTLTIAAVNDREEKRITTEFIVNAAGGNAM
                     DIAHSMHLAKEFTDLHFRGEYWQAPVEYRHLTKLSIYSVPKYPEYPFLDPHWIVRIDG
                     RCEVGPNAVPVFGPYAYDWSKNLRYILPKIYESSKTAGVCKILFDRQFLHLILDELKS
                     SLSKTSMINRAREFLPQLKASAFTERGTAGIRSLLIDKDGKFIPDTQIIKQDNSIHIL
                     NYNSPGATGALPMAASVVNELYEDGTISFAESKSLWDIRSVAEKMDVKIN"
BASE COUNT         2037 a         1095 c         1259 g         2061 t
ORIGIN      
        1 gagatccttg acaaagtctt ttggtcttgc tggtctaaga gttggatata gtatatgcaa
       61 tcctggactt gccagcagga tgtctgctaa tagtataact tggaatgtaa acggggtggc
      121 acaaatggct gcaattgctg cattaaaaga taggagtcat ttagcgaatg caagggctgt
      181 aattaaaaag gagcgcaagt atatgcagca taggatagag aaaaaaatgc agaattttac
      241 accatgtaaa tccgacgtaa acttcttttt gatccatttg aaaaagaaga attcaataaa
      301 agtaagagat tctatgttga caaaaagcgg cgtgcttgtt agagattgta gtacatttac
      361 tggtatgggg catgaatata tccgagtagc tgtaaagaaa cataaggaaa atttgatttt
      421 actcgatgcg atggagttgg ttgataatag atgacaaaag ctaaactgtt gatgattcaa
      481 ggaacgtcat cgggagcagg caagagcact ctagttactg cattttgcag aatttttaat
      541 gacaaaggat atcgagttgt tccatttaaa gcgcaaaata tgtcttctaa tatttatatc
      601 actaacaaaa ccgtaggtat gatctcccta gcacaagcta ttcaggcaat tgcttcaagg
      661 aaaaatccgg atacaagaat gaatcctatt ttattaaaac cacttggcga ttatcgaagt
      721 agggtgatat tgcgtggtaa atattatagt gaaatgcatg caaaagaata ctatgaaagg
      781 ttcgtcttac aaaagggctt gtcattaatt ttaaatgcac ttgatagtct cagaaaagaa
      841 aatgatattg ttataatcga aggagcaggt tctcctgccg aaatcaatat ttcaaaatat
      901 gatgcagcaa atatgttact tgcagagaaa gtttgtgcgc cagttattat ttgctcggat
      961 attgaaagag gtggatgttt tgcaagtatt gtaggtacca tgaaattgtt aaagccaatt
     1021 cataatgatt tggttaaagg ttttctaata aataaatttc gtggtgatat atcactttta
     1081 gatcccgcga ttaaatcagt tgaaaaaata accagaaagc aagttttagg agttatacca
     1141 aaacttgatt ttcatttacc agaagaagat tccctcgaca gcaggcgtac aaataaacaa
     1201 gaacagccaa gggaatcgtg ggatggtcac ataaatctgc ttgcaaaggc agtaaataaa
     1261 agtatcaata tacaaagaat aatgactaag gttattggac tcatgtgatg gttttggtgc
     1321 tgtcacagga cttgttagta gcacttgttg gtgcaatcat actagatctc ttgctcggag
     1381 atccctctaa taaataccat cctgttgcgt ggttaggcag gctcatagga ttctttgtgc
     1441 caaagttaaa agataataat aattatacaa agaaagaaag agtgaagggc attatttttt
     1501 cgaattcgtt aatcattgca tttggaatca taactcatgt tggcgcaatt tcagctgttc
     1561 atgtatttgg atcaattggc cttttcatgt tttcagcatt aatcctgaaa attacgattg
     1621 ctataagagg aatggaaaaa catgcaaatg cgattatgag ttcattagaa agaaacgatt
     1681 tgttaaaagc gcaacacaat ctgtcggcga ttgtaagaag agatactaat aatttagacg
     1741 agcaacatgt actctcagga actattgaat gcattggaga aagtgtagtt gacggaatta
     1801 cctcgccatt attttattat tcattttttg gtcctgctgg atcttttgct tatagaataa
     1861 ttaatacact tgactctatg ataggatatc aagacgatta ttataaagat attggatgga
     1921 tgtcagctat tcttgacagt tttgctaact acatacctgc aaggatcact gcgtttttga
     1981 tgataattgt tgcaaaggtt attggcgctg attctaagaa atcattagaa actttgaaac
     2041 gcgatcacaa caaaactgcc agtatcaatg caggatatcc aatggccacg atggctggag
     2101 ccctgagaat aaggcttgaa aaaattggtt actattccat aggagaagaa tatgagcctt
     2161 catctattga aaaatgtaaa actgcaattt ccataatgaa attgacaaca tttctatttt
     2221 gcataatatt gtccgctcct ttaataacaa ttttatatta tgccggatgg tggagaatac
     2281 tttttggtct ttaagtcaat gcaggcaatt atttcatttc taactataat acctgttccg
     2341 aaaccatcta ttgtagatat tgacagtatt gcaaacaaga tgcattattt cccgctagct
     2401 ggtgcaatga ttggatcttt gatcggaggg ctggcatatg gaatttcttt ttatctgcaa
     2461 ccaccattaa ttggtttttt tattactggc gcatttgtga taattactgg tgtacagcat
     2521 actgatgcat tagctgattt tgctgatgga ttaatggcaa aaggctctaa ggatatcaaa
     2581 tacaaggcaa tgcatgatcc tgcggttggt tctgctggag tatcatctat tattctttat
     2641 attatgggca tggttatttc tgtatctagt tttcatcatg gaatcagatt attcactagc
     2701 attgtcgcag ctgaggtaat agcaaagtat gtgatggttc tgcaatccta tcgaggactt
     2761 tccgcatggg aaggttttag ttctccattt accagagcta tgaaggacag gcgaaaaata
     2821 ttatccgcca cggcagttac acttcctatt gtctactttt tcggtggcgg ttattatgct
     2881 ggtcctatat cgcttggagt agcggtagca attgcaacaa ttatacaaca tgtttcaaat
     2941 aaaaccctag gcggcctctc tggtgatgta attggagcat ccaatgaact agctcgactt
     3001 tcatctctaa tagttttgtc ttcagtaacc atatgaagtc atgcagcact atcattatac
     3061 attttaaaca atagaatgtt ttacgataag caatgatcgc tgctataatg tgtggtggta
     3121 aaggaagcag gataaaaaat tccattgata tggaaaaacc gttattaaag ttaaaaggaa
     3181 agacaatgat agagattgtc ctttatgcac ttgccgagtc ccatgaattt gataaaataa
     3241 ttggagtgac aagctccaat actccaaaaa ctcacgcatt tgttaattgt tacttagcgt
     3301 tgcttatgac tgatctgatt aaaaccgaag gtagaagtta ttcaaaagat ttgtccatag
     3361 tcctcaacaa gctgaaaccg gcaacgattt ttgtggtacc tgccgatctt ccactgttaa
     3421 gcacaagagt cgttcagaaa atcctcagca ggtactatgc tgtatcacct tgtgtttcta
     3481 ttgtatcaga ttataaattt gttgtaaata tgggaataaa accaagtctg gtgctgaata
     3541 tcaattcaaa agaatattgc cataccggca taagcataat cgactcgtca aaagtcatgg
     3601 gtttcgctac tttaaaggaa tattatataa taatgaatga aaaagaaata gcagtcaacg
     3661 taaatacaaa agaagaactt gagatcgcag aaagattgct aggttgacct agtcaaggga
     3721 atttaaaatt tttccaagaa tatttgctct agatccactc ttgtttgcaa tcaattggcc
     3781 acaagatttg caataaatat cagtcgtagt atgactaaag atgactctgt tttctccgca
     3841 ttgtatgcat tggacagata taaagttgct atgtggtttc ggaatcatta tattattctt
     3901 gcgcatagta aacaaacact atctctagga ttggatctca agcttgcgaa ttcgcatacc
     3961 ttctttcatt gtctttctct gacaactttt acatgtgtag cgtaatgtaa ttttttttgt
     4021 ggtcttggca gttctcttaa gttctgggaa cttttgaccc ccatatcctt tcttgtcttc
     4081 tgcatggcga cgagcacctt ctgcaacttt tctgtctttg cctttcttat atattgctac
     4141 tgcttggact gtgtggatct tgcatttaga acagaacttg cgaagctcct tctgcatctt
     4201 catactaaca agatccaaat tagggtaatt taaggacact ggccaaattg tcgcgataac
     4261 cagagaatca agattaaaat atctattttt gtaccacaga caaaaattaa tgaaaagaaa
     4321 ataacaaaaa ttgaactaaa ttaaggggtc attggttaaa agcgggatat aaaccttata
     4381 ttctacctgc tggaaaggta tagagaaatg gaattccttg gcagtttaat acaacagata
     4441 caggtaagtg aacagagctt tggcgtgtgg atacctttgg catttgggct tatagtgggt
     4501 ctagcctacg taatcgcctc agctgcgaga cgcagtaaat aataatttat actccaaccc
     4561 tttctttttc ttatagcatt tttaaaagat actgctttga gatattatac aaaaaagatt
     4621 aaatcaacat aatgtttatt aaaacttcgc tccatatgcg aacaaaagta tttagttgat
     4681 gatgaattat ctttttgcaa gatgagtatt cgatgctatg aatggactgt gattgtcttg
     4741 aagtataagt gggcttcaac gcgagcggag agcgcgaaaa gggatggaat tcagaatatg
     4801 tcgggctcgc aatatctcta ataaggctaa acacagactt cacaaataaa agtaagtaac
     4861 cataattact aatttatttt aacgtccatc ttttctgcta ctgacctgat gtcccagaga
     4921 gatttgcttt ctgcaaaaga tattgttcca tcctcatata attcatttac aaccgatgca
     4981 gccattggta atgccccagt ggcacctgga gaattataat ttagtatatg tatagaatta
     5041 tcttgtttaa ttatttgtgt atcgggaatg aatttaccat ccttgtctat taacaacgat
     5101 cttatgcctg cagtccctcg ttcggtgaat gcggatgctt tcaactgggg tagaaattct
     5161 cgagctctgt ttatcatgga agttttggat aatgagcttt tgagttcatc cagtataaga
     5221 tgtaagaatt gtctgtcaaa aagaatttta cagacgcctg ctgtcttaga tgattcatat
     5281 atctttggca aaatgtatct taggttttta ctccaatcat acgcataagg tccaaatact
     5341 gggaccgcat ttggacctac ttcgcatctt ccatctatac gtactatcca atgaggatcc
     5401 agaaaaggat attcaggata ttttggcact gagtatatac tcaattttgt aaggtgacgg
     5461 tattctaccg gcgcctgcca gtattctcct ctgaaatgaa gatcagtaaa ctcctttgct
     5521 aaatgcatag aatgagctat atccattgcg tttccgccag ctgcattaac gataaattct
     5581 gttgtaattc ttttttcttc tctgtcattc acagcggcta tcgtcaaagt gctatcgttt
     5641 gtagatcggg atatcttgcg aactttgtat ccgagtaaaa tgctacatcc aaatgattta
     5701 caatcctgca acaagctctt tgttaaagat ccgtagtcga ccgatgcgtc tttagagcag
     5761 tataatgcag cagtgccacg aacgctaggt tcaaaattct ttatttcact tccttttaag
     5821 aatttaagat caagttcttg ttttagacca tttgattctc cccattctat atatttttgt
     5881 agtctgtcta tgcctctctc gtcagtggcg acttccaata cgccatcctg cttaaaaagt
     5941 agatgtttat tgtttgagta tttataccac atctcgtagc ctagagaagc agcttttgca
     6001 aaaagtttct ttttcgctgg atcataaaga aaaggggcgt gcaccctacc tgtatttctg
     6061 ctgctcgtat gaaaagctac cttcttttcc tgctcaataa gcaaaacctt caaactgcat
     6121 atggaagaca agaaataagc gatagaggtc ccaaggatgc cacctccaat aatcgcaaca
     6181 ttgtagtgag tttgcaaaga tagatttgat ctatatgaat acaggaaata taaagacagc
     6241 ttctacttaa aattagtcta ttctaaacga gtcgacaata ctcttgtcta gaaataatat
     6301 tcgctaggct gatttattag gtcgcctaaa gttatctagt tggaggaaaa atggtagtta
     6361 agatgatatg aggcccccac aggaagcaga aatgtttaat ggacaaatta cttgtatatt
     6421 gtattaatgt atattgtatt aaaatgtaat ag
//
LOCUS       DASQSJ010000211         6573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_343754, whole genome shotgun sequence.
ACCESSION   DASQSJ010000211 DASQSJ010000000
VERSION     DASQSJ010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6573
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343754"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            778..1194
                     /locus_tag="VE223_04145"
     CDS             778..1194
                     /locus_tag="VE223_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20815.1"
                     /translation="MSSSSSSSSEEQKHEIEKMASAIEDLLYMKAIKFEDSSQSGERA
                     ILSTQFSIIVSKLMADAKSSPQDNDNNEIMKLVYYSLLIYMNEYLKLPKSLTMAFGND
                     LEKHREAMQCSELVSNYVTVLQNIFLEQRKEIDKKK"
     gene            1296..2798
                     /locus_tag="VE223_04150"
     CDS             1296..2798
                     /locus_tag="VE223_04150"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZC20816.1"
                     /translation="MKNHGAIIIIVLVTLIPLASFLLPIAAHSQILYLPNAQRAEKNQ
                     GNQEGTITARNESNNSIPSNSGYASSRNANKVVIINFDDSHKSQYEYAKPILDKYGFK
                     ATFFEVCDWIGTDHDSDKGMSWQDIAELQQDGMDIESHTMTHPHLNELSPADLDYEIG
                     QSKQCLIDHRINATIFAYPYSDGSNNSTVINTVAKYYNLARTDSKFPLTFLHCDGDSV
                     GKNPVPSNQTNCGTSTFANRYSINSWSHRHIEGDFSYVHGVCTTGVCLYYNNSQMLEK
                     FIANVNSQNIYNTGGIIRAIPIIIYHTIVTYPDVSYSKRPVDTTVNLFDAEMKYLHDN
                     GFRVLTMADLGYDKSGHYLYIQNTSQSQKSEMVFASNRSSNNTQVWTDKQSNIKIQFS
                     HLPPYLFVGNNTQLNFKVIDLKTDKPLQASYVHALITKNVNANDNISKLNRTFNKDDF
                     VAFGNITAPNGIFSLRHQFKLEGIYQIIVKLNTYNGKVVLASFSVPVSTS"
     gene            complement(3325..4371)
                     /locus_tag="VE223_04155"
     CDS             complement(3325..4371)
                     /locus_tag="VE223_04155"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HZC20817.1"
                     /translation="MSSKMLAAVVPSVNGKWEVKEMPAPRPGTNEVLIKIHASGICYT
                     DVHATKGALGVKFPYTIGHEPAGEVVALGEGVTTRKVGDRVGVPWLQSTCGRCEWCQR
                     GKSFFCPNHIATGINIAGSHAEYMVAYADATQLIPNGVSYDQAAPIFCAGYTVYSGLR
                     LADPKPHERIAVVGIGALGHLGIQYSKAAGFETIAITHSKDKEELAYKLGADNVVSDG
                     EALLKQKGQHGYSSPEDGEGGGADVILATSNSYKATADAIKGIRPDGRIVLMGVSSTE
                     TLTISSEILFKRARIIGSTQNDRDHLYEALDYVAKGKVKVMTETFPLEEISNAYDKVS
                     NGNVRFKALIKPTK"
     gene            complement(4553..4765)
                     /locus_tag="VE223_04160"
     CDS             complement(4553..4765)
                     /locus_tag="VE223_04160"
                     /inference="COORDINATES: protein motif:HMM:NF016246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HZC20818.1"
                     /translation="MKKYSRLAIMCAEAVPWRCHRRMISDYLVMVEGISVFDIFDSKK
                     PSSPHELTSFARLIDDKIISYPENVR"
     gene            complement(4762..5115)
                     /locus_tag="VE223_04165"
     CDS             complement(4762..5115)
                     /locus_tag="VE223_04165"
                     /inference="COORDINATES: protein motif:HMM:NF016246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HZC20819.1"
                     /translation="MAIVFTVGHSNRKWSDFISILKDNHIDLVVDVRRYPASRACPQF
                     NKEQMTIELRKENVSYIHIEKLGGRRNKLDTKEGGRSGNEANNAGWKNKSFRAYADYM
                     ATTSLAKVSMNYFCL"
     gene            5626..6009
                     /locus_tag="VE223_04170"
     CDS             5626..6009
                     /locus_tag="VE223_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20820.1"
                     /translation="MNKRYVYYLIIAVIGVIFAFYFYSTQINKPTFGLEVDPTKDTTD
                     IAGIQYRVRLTNVGMKQLTGIVVDLGKNDIQHLSLLDPGQSYYFYPKPDTIVSIVKVK
                     TNEGIHVQADYRSPTKTLGLPGSGR"
     gene            6142..6375
                     /locus_tag="VE223_04175"
     CDS             6142..6375
                     /locus_tag="VE223_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20821.1"
                     /translation="MTIDKDCLGPCPGVMFSITVTGNNPQPSSFTFGNEQDQDVTLGP
                     GSFTVTETPVTGFLTVFVGDCTQTLALIRQLVP"
BASE COUNT         2116 a         1260 c         1146 g         2051 t
ORIGIN      
        1 ccgataggat taaagctata attgagttca gcgatttagc atgtctcgag tcctctggtt
       61 agcaaagtcc aagcttttgg ctcttttcat aaatagctga tctattattt gcaggcatat
      121 actacttgca gatattgcat ataatcacgc acaaagttaa agtggtagcg caagataccc
      181 tgataatatc atatcaaggt gattgttgct gtttgtttga ttgattgcag attaatccag
      241 ctgctgtcgt catcatcact cacttctttc ccttcttacc aaagaattca tctaacgcct
      301 gtatcaagac ggcggtaaca gtagtatcgt gattaagtgc gtatttgctt ttcttcttaa
      361 caagtggctt aggtaaacgc tttatatgat gctgctgtca atagtgctta aactatacta
      421 tagctccagg tgaggagtag taatattttg tatggcagca tattatcttt tattaagata
      481 ttaataacaa cttttattca tactgattat gcaaatttta tatgcagatg tgcatttacc
      541 agaagaatat aaaactagca aatgccctag gagtgtccca gttgttggtt ggttggaaca
      601 atgttgttgt gggtattgtt aacctctgcc aatagagttc atggtaaaaa ctgtgctaat
      661 tgccgccaca ggagaaaggc ttgggtttgt tgaaataatt ctaagtgtat tttcattttt
      721 tattctttgg tgaaaattat atctttttaa gacaatacta taattattca tacatacatg
      781 tcatcgtcat catcatcttc atctgaagaa cagaagcatg agattgaaaa aatggcgtct
      841 gctatcgaag atttgctata tatgaaagct ataaaatttg aggactcgtc acaaagcggt
      901 gaaagagcaa ttctatctac tcagttctcg attattgtat caaaattaat ggctgatgca
      961 aaatcttctc ctcaagacaa tgacaacaat gagattatga aattggtata ttactctctt
     1021 ttgatataca tgaacgaata tctgaaatta ccaaaatcct taacaatggc ttttggtaat
     1081 gatcttgaaa aacatcgaga agcaatgcaa tgcagcgaat tagtttctaa ttatgtgaca
     1141 gttttacaaa atatattctt agaacaaaga aaggaaatag acaagaagaa ataattagcg
     1201 tcgcaaagca aagaaaacaa agttagccaa aatgacacta taacatatac ataatatacc
     1261 cgattaacgc aggttgttta attagtacct tgataatgaa aaaccatggg gctattatta
     1321 ttattgttct tgtaacactt attcctctag cgagcttttt gctgccgatt gcagcacata
     1381 gccaaattct ctatttgcct aacgctcaaa gagccgaaaa aaatcaagga aatcaagagg
     1441 gcaccataac agcaagaaat gaatctaata attctatacc ctcgaattcg ggatatgcaa
     1501 gtagtagaaa tgctaataaa gtcgtaatta taaattttga cgactctcat aagagccaat
     1561 atgaatatgc caaaccaatc ctagacaagt atgggtttaa ggccaccttc tttgaggtct
     1621 gcgattggat aggaacagat catgactctg ataagggaat gtcttggcag gatatagcag
     1681 aattacaaca ggatggcatg gatatagaat cccatactat gacccatcca catttaaatg
     1741 aattatcgcc agcggattta gattatgaaa taggccaatc aaaacaatgt ttaattgatc
     1801 atcgaatcaa tgcaacaatt tttgcatacc catatagcga cggatcgaat aattcaactg
     1861 ttattaatac agttgctaaa tattataatc tagccagaac tgatagtaag tttccactca
     1921 catttctgca ctgtgatggt gatagtgtcg gaaagaaccc cgtaccttct aatcaaacaa
     1981 actgtggaac atcaaccttt gcaaataggt actctattaa cagctggagt caccggcata
     2041 ttgaaggtga cttttcatat gttcatggcg tatgcactac tggtgtttgc ctctactaca
     2101 acaattccca aatgcttgag aagttcattg caaacgttaa cagtcaaaat atttacaaca
     2161 cgggaggaat aataagggcg attcctatta ttatatatca taccatcgtc acatatcctg
     2221 atgtaagcta tagcaagaga ccagtcgata ctacagtgaa tctgtttgat gccgaaatga
     2281 agtatttaca tgataatgga tttagagtat tgaccatggc tgatcttgga tatgataaaa
     2341 gcggccatta tctatacata caaaatacaa gccagagtca aaaatctgaa atggtttttg
     2401 caagcaatag aagtagtaat aacacccaag tgtggacaga taaacagtcc aatatcaaaa
     2461 tccagtttag ccatttaccc ccatatcttt ttgtagggaa taatactcaa ctaaatttca
     2521 aggtaattga tctaaaaact gacaagcctt tgcaagcatc atatgtgcat gccttgataa
     2581 caaagaatgt taatgcgaat gataatatta gtaaacttaa cagaactttt aacaaagatg
     2641 atttcgtagc atttggcaat ataactgcgc ctaacggtat tttctcccta aggcatcaat
     2701 ttaaactaga aggaatatac caaattattg tcaaattaaa tacatataat ggcaaagttg
     2761 tattagcatc atttagtgtt cccgtgagca caagttagca ttgtcaacta tatatggatg
     2821 tagtatcagg tccacatgac cggtattgcg atcatcttta tcagcctgta tagcaccagc
     2881 atgataccca tacattcttg acctgttaca cctttacaaa gatgtcacta tcaagttgaa
     2941 gtattgcatt acttcgataa acatgttcct tagtagatga tgcagccctt gggaacaaag
     3001 taaaagatag tgtagaacga gctaaatctt ttgaaggcgc attagaaaag gctggtggta
     3061 aatctcttgg tgtatattat acgattggaa gatacgatat tgtagtcatt gttgaagatc
     3121 caagtgatga agcgatagca tcagtcctat ataggactgc aagtctgggc aatatacgta
     3181 ctgaaacact taaatcgttt tcgatgggtg aagcagctaa cataattgaa aagctctcat
     3241 agtgagcata tatgagattt atcgaacaat atatcaatgg ttattggacc atctctaaaa
     3301 cgaaaaaatc atgaatgaac aaatttactt ggtaggcttt attaatgcct taaatcgtac
     3361 gtttccatta gataccttgt catacgcatt gctaatttct tccaagggga atgtttcagt
     3421 cattaccttt actttacctt ttgcaacgta gtctaatgct tcatacaggt gatctcggtc
     3481 attttgtgta gaacctatga tgcgagcacg cttaaataag atctctgaag agattgtcag
     3541 agtctccgtt gatgaaactc ccattaaaac tatacgtccg tctggcctga tacccttaat
     3601 tgcatctgca gttgctttat aggaattact tgtagccagt attacatctg ctcctcctcc
     3661 ttcaccgtcc tctgggctac tataaccatg ttgacctttt tgttttaaca atgcttctcc
     3721 atctgaaaca acattatcag ctccaagttt gtacgctaac tcttctttat cttttgaatg
     3781 tgtgatagca attgtttcaa aaccggcagc tttggagtat tgaattccaa gatgacctag
     3841 cgcgcctatg cctactacag caatacgttc atgtggtttg ggatcagcta acctcaagcc
     3901 actatatacg gtatatcctg cacaaaatat aggtgcagct tgatcatatg acactccatt
     3961 tggtattaac tgagtagcat cagcataagc aaccatatat tcagcatgac taccagcaat
     4021 attgattcca gttgctatgt ggttaggaca aaagaatgat ttaccacgct ggcaccattc
     4081 acacctacca catgttgatt gcaaccaagg tactcctact ctatcaccaa cttttcgtgt
     4141 tgtcacacct tcacctaaag caacaacttc tccagcaggt tcatgtccta ttgtataagg
     4201 aaatttcact cctaaggctc ctttagtagc atgtacatct gtatagcata tgccactagc
     4261 atgaattttt attagcactt cattagtgcc tggtcgtggg gcgggcattt ctttgacttc
     4321 ccactttcca ttgactgatg gaacaactgc agctaacatc tttgatgaca tctaatgcta
     4381 aaactactta ttgccagtat tattattgtt ccttaagata tgttatcttc ctgcctcctg
     4441 taattttgat tagtttcaat tctatatata ggatgctcga tatcctcaag aattatgtta
     4501 gcggtattgg gttgttaatg tcatttcatc gacatacttg aaacttagct gtctatctca
     4561 cattttctgg ataggaaatg atcttgtcat caatgagacg cgcaaatgat gttaactcat
     4621 ggggagatga tggttttttg ctgtcaaaaa tatcaaatac actaatacct tccaccatga
     4681 cgaggtaatc tgatatcatt cttctatgac aacgccatgg tactgcttct gcgcacatga
     4741 tagctaacct gctatatttt ttcataagca aaagtaattc attgatacct ttgctaagga
     4801 tgtggttgcc atataatcag cataagctct aaagctcttg tttttccatc cagcattatt
     4861 agcctcatta ccactgcgtc caccctcttt ggtatccaac ttgtttcgtc ttccaccaag
     4921 cttttcaatg tgtatatatg atacattttc cttccggagc tctatagtca tctgttcctt
     4981 gttaaactgc ggacatgctc tagatgcagg ataacggcgt acatcgacta ctaagtctat
     5041 atgattatct ttcaaaatag aaataaaatc actccacttg cggtttgaat gtccgacggt
     5101 aaaaactata gccatccatg attcattata ttaagcgaga tactaattca agccattttc
     5161 ggttgggtat aaaatatcgg taaggaacca gtaattacaa atcaaagaaa ctacttaaaa
     5221 gaagacaatc tagatactgt ttatacaaat aactatatgt gataagatca gctctaagct
     5281 ctgacctata aaaacagcgt gtataatgat tcctatttgc tgtaataacc tacacatagt
     5341 tgcttctttc attttgctct tattctctaa accttctata atcctcatcg agtaaagcaa
     5401 cttcctatat ctgattctcc tatcagtaag gtctggtacc tttacttttc agatcctcaa
     5461 tgatttcatt tatctcattt tctccctata gactttttcc agtttctcca ttatcaccat
     5521 gaacagcaac aagcagtctt gacgaccaaa taatagttag tagctagcta gcgtttgtat
     5581 tatatatgat taatacattt tatatacaat gattaaaaaa ttataatgaa taaacgctat
     5641 gtctattatc ttattattgc agttatcgga gtaatatttg cattctattt ttactctact
     5701 cagataaaca aacccacatt tggactcgaa gtagatccaa caaaggatac tacagatata
     5761 gctggaattc aatacagagt aagactaaca aacgttggaa tgaaacagct cacagggatt
     5821 gtggttgatt tgggaaagaa cgatattcag catttatctc ttcttgaccc aggacagtca
     5881 tactattttt atccaaagcc cgacactata gtcagtattg taaaagtcaa aacaaatgag
     5941 ggaattcatg ttcaggctga ttataggtca ccgacaaaaa ctcttggatt accaggatct
     6001 ggaagataag actgaggagt agccaaaaac taagagggaa agaaagggtt aggtgtagta
     6061 actcacccca tagtaactcc tacaccaata gtaactcctc atcttgttac accaactcca
     6121 acacgatcag tgccagggac tttgactatc gataaagatt gtctgggacc atgtccagga
     6181 gttatgtttt ccataactgt tacaggcaat aaccctcaac catcttcatt cacttttggt
     6241 aatgaacaag atcaagatgt tacattggga ccaggcagtt tcacagtaac tgaaactcct
     6301 gtgactggat ttcttactgt tttcgttggt gattgcacgc aaaccctggc tctaattcgg
     6361 caactggtac cataagtgct ggacaattcc tattttgtcg tatcgtaaac atcatatgat
     6421 aagtgcagga caaaacctac tttgtactat cacaaacact caacaaccta atttgagaaa
     6481 cacatcacaa acggctacta tcataagata gtggaggact cagaagaaca agaagaataa
     6541 ttaatggtga ctgcaagcat gaagatagtg aag
//
LOCUS       DASQSJ010000212         2076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_463080, whole genome shotgun sequence.
ACCESSION   DASQSJ010000212 DASQSJ010000000
VERSION     DASQSJ010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_463080"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VE223_04180"
     CDS             <1..383
                     /locus_tag="VE223_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20822.1"
                     /translation="QGQKINTEVPLEEVQGKQQISFPDSSGSSDVAGGGGSATGAASN
                     SNNVGPQLQGIVSQLSNDIDSTKNSVDTVAKNNADTQKSIQDLKNAVDRTYMIGMAGI
                     GAGIAGIIIASVALSRKDILKVSS"
     gene            747..1577
                     /locus_tag="VE223_04185"
     CDS             747..1577
                     /locus_tag="VE223_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20823.1"
                     /translation="MIKLDLPKVSSIAIIFLLLAGSVSAAIIPKLSQPAYAHTFTADE
                     SASFLSVIKILQAESKLVQENLASNPTLAQAHAKAIVNVVNGNHTFGVLPDEVSENNK
                     RVAADIVKGANALRTAVNSKPSATQADIGTKLNYLDGVLQEAITVRVPKAHVNNFAIN
                     AQAVKNLVNETLRQYGYAFGMSKGNTAPASSISNMSAFQSAQALSSQSQSVLSQAKSF
                     IPKNETSAATLSSISKVASDIAQLKGGIDTKLPYQRIASLVQKTVYPDINTAFHLKNK
                     "
     gene            complement(1893..>2076)
                     /locus_tag="VE223_04190"
     CDS             complement(1893..>2076)
                     /locus_tag="VE223_04190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20824.1"
                     /translation="RIVPCNFTGQPNGEWIEAEAHIVNSNESEKANKLLKQKYDLQET
                     TFPHTVEEVVISICQR"
BASE COUNT          703 a          381 c          375 g          617 t
ORIGIN      
        1 tacaaggaca gaaaattaat actgaagtac ctcttgagga ggttcaagga aagcaacaaa
       61 tatcttttcc agatagtagt ggttccagtg atgtagcagg aggtggtggt agtgccacag
      121 gggctgcaag taatagtaac aatgtcggac ctcaactaca aggaatcgtc agtcagctgt
      181 caaatgatat agactcaacc aaaaacagcg tagacacagt ggccaaaaat aatgcagata
      241 cacagaagtc cattcaggat ttaaagaacg ctgttgatag aacctatatg ataggaatgg
      301 ctggaatagg ggcaggtata gctgggatta tcatagcatc tgtagctctt tcccgtaaag
      361 atatccttaa ggtttcatca taatatgtgg attgatttta taagtaaatg aagtcagatc
      421 ttgactccaa ttatacacat aaatatatat ttacatataa atctgggata cttaaaataa
      481 aaaagtccat actatcctaa cagattaaaa gaataaaatc ctaaacctat tcattttgat
      541 aagttaccaa gaaatcatac attatagagt atgactagtt aatcattatc atttttctta
      601 cagcagtatc tccatatctt catatttgtt agcactagca gcttggtgca agtgaattca
      661 aatttatggc tattgtggag atttcctgat ctgcttcgta ggttgtacca taaactattt
      721 tatagcgatt tagtctgtca tattcaatga taaaactgga tctacctaaa gttagtagta
      781 tagcaattat ttttctttta cttgcaggct ccgtctctgc agcaataata cctaaattga
      841 gtcaaccagc atacgcacat acttttactg cggatgagag tgcgtcattt ctctcagtta
      901 taaaaatact acaagctgaa agtaaactag tgcaggaaaa ccttgcttca aatccaactt
      961 tggcgcaagc gcatgcaaaa gccattgtca acgtggtaaa tgggaatcat acatttggtg
     1021 ttctcccaga tgaagtctct gagaacaata agagggtagc agctgatatt gttaagggtg
     1081 caaacgcctt acgaacagcg gtcaactcga aaccatcagc cacacaagca gacataggga
     1141 cgaaactgaa ctatcttgat ggcgtcttac aggaagctat tactgtgcgc gttccaaaag
     1201 cacatgttaa taactttgca attaacgcgc aagctgtcaa aaatctagta aatgaaacac
     1261 tcagacaata tggatatgcc tttggaatgt ctaagggaaa tactgctcca gccagctcta
     1321 tatcaaacat gtctgctttc cagagtgcac aagcgttgtc ttcgcaatca cagtcggtac
     1381 tgagtcaagc aaaatcattt atcccgaaaa atgaaacatc cgctgcgaca ttgtcatcaa
     1441 tatctaaagt tgcctcagac attgcacagt taaagggtgg catagataca aaattaccat
     1501 atcaaaggat cgcgagtcta gtccagaaaa cggtctatcc tgatatcaat acagccttcc
     1561 atttgaaaaa taagtagata acatacataa gatttctttt tcttttttga aaaataacaa
     1621 attagcaagt tactgtctat aatgttgtgg cgttagctga tatcacaatt caaactagtc
     1681 taaaatccat tactcagtat agacaggatg tttgccatat tctgtagcca atttttgtat
     1741 aaactgttcg gctacaagta taataggatg tatctagcta taggcttaat gctaagtgaa
     1801 cagagcaatg tatcaacatc aaattcttaa ggaatccagc tgatactctt caaataataa
     1861 taataataat aataatcatt aaaatgagtc atctatcttt ggcaaattga aatgacaact
     1921 tcctccacag tatgaggaaa tgtcgtttcc tgtaagtcat acttttgttt tagaagttta
     1981 tttgcttttt ctgattcatt tgaatttaca atgtgtgcct cagcttcgat ccattcacca
     2041 tttggttgtc ctgtaaaatt acaaggtaca atacgt
//
LOCUS       DASQSJ010000213         2246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_290612, whole genome shotgun sequence.
ACCESSION   DASQSJ010000213 DASQSJ010000000
VERSION     DASQSJ010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290612"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1393)
                     /locus_tag="VE223_04195"
     CDS             complement(<1..1393)
                     /locus_tag="VE223_04195"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HZC20825.1"
                     /translation="MSTDSRDIIDSKIDSENKFGAQGTLLFLDQLLVALGGWFYWLAI
                     VSKISSSEVGQVTAIYSLVALISTLLQLGLEYPLLKRSSTQRSQILATVLVVEIVITL
                     VVLPIVPYIITNVFQETSQGLFKFNWLAVGILISSSLGFVSRFALLGISDVKSILIID
                     IIGTGIKFAVGYTLVFMGFGAFGLLLSFLLQNLVISGTTLIVARRSKFGFRPGNLKYT
                     KEIIRDGLINTPSKFSRMIILSLSVVLLASFGVKSSEIGIFYVALMISIVATGGLALS
                     MAYMVVPASAKSRTDLSSSSTRIGVTLTAPIIAALLTSPKFILSIIGAQYIPAETILL
                     VLSVSILPSCITMNAISKFNNLNKSRKLITIGSIEIMTFLLAFFFLVPHYGTLGAAFS
                     TLIAFVSSSVLSIVWSERRSVRDIGTSCVAIIAGVASGYVFGLMVAIHPLELILISVA
                     VSVTVVTALKNTSP"
     gene            complement(1374..>2246)
                     /locus_tag="VE223_04200"
     CDS             complement(1374..>2246)
                     /locus_tag="VE223_04200"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZC20826.1"
                     /translation="DLQMIISDKKDFSSESIDTVKPEVYRIKTHISVVIPVHNQEKTI
                     SVLLSRIKGILNSTLRSYEIVVVDDGSFDNTFRVLQKEEKLDSSMKVISYIPNRGKGY
                     AVKTGVMQSSGNLVIFVDGDLDISHDKIKDYITELENCDLVIASKMHPQSKVKAPLSR
                     KFLSRVFNSLVRLSIGLKVKDTQSGLKAGKGAALRTIFRIMLVKRYAFDVELLTIASA
                     LNLKIKEMPVEINLDHNFKVQDIAKMLLDVTAITYRYKVKRWYHKQLMLLSEPEISNP
                     TNKKNLNLDVYRFP"
BASE COUNT          743 a          428 c          384 g          691 t
ORIGIN      
        1 taggagaagt attcttaagt gcagtgacta ctgtcacaga gacagcaaca gatatcaata
       61 ttaactcaag tggatgaata gcaaccatca aaccaaatac atatccagat gcaacaccgg
      121 caataatagc tacacaggaa gtaccgatat ctcttactga tcttcgttct gaccaaacta
      181 ttgagagcac tgaggaacta acaaatgcta taagtgtaga aaaagccgct ccaagagtcc
      241 catagtgagg aaccaagaag aagaatgcta ataaaaatgt cataatctct atagatccaa
      301 tcgtgataag tttccttgat ttattcaagt tattgaattt tgatattgcg ttcatcgtta
      361 tacaggaagg taaaatgcta acagaaagaa ctaacagtat tgtttctgct ggaatatatt
      421 gtgctccaat aatagaaagt atgaatttag gtgaagtaag taatgccgca attatcggag
      481 cagtcaaggt cacgccaatt cttgtactgc tagaagataa atcagttcta gatttggcag
      541 aagcagggac gaccatatac gccatactta aagccaaacc acctgttgca acaatactaa
      601 tcattaatgc cacataaaaa atgccgatct cagaactctt tacaccaaag gaagcaagaa
      661 gaacaacgct gaggctcaga ataatcatcc ttgaaaattt agatggtgta tttattagtc
      721 catctctaat gatttcctta gtatatttca aattgcccgg tctgaatcca aatttgctcc
      781 ttcttgcaac aatcaaagtg gtgccactta ttacgagatt ctgcagcaaa aacgacagca
      841 gaagaccaaa ggctccaaat cccataaata ctaaagtata tccgactgca aattttatgc
      901 cagttcctat aatatcaatt attagtatgc tctttacatc agaaattccc agtaatgcga
      961 aacgagaaac aaaacccaag gatgaactaa taagaattcc gactgctagc caattgaatt
     1021 tgaataatcc ttgtgacgtt tcttgaaata cgtttgtgat aatatatggt acgataggta
     1081 gtacaaccaa tgtgattact atttctacta cgagtactgt tgcaagaatt tgggatcttt
     1141 gagtagagga tctcttcagt aagggatatt ctaaacccaa ctgcaatagc gtagagatca
     1201 atgcaacaag gctgtaaatt gcagttacct gacctacttc agatgaacta attttagaga
     1261 cgattgcaag ccaataaaac cagccaccaa gtgcaacaag tagctgatca agaaaaagta
     1321 gtgttccttg agcgccaaac ttgttttctg aatctatctt tgagtctatt atatcacggg
     1381 aatctgtaga catctaaatt caaatttttt ttattcgtag ggttacttat ttctggttct
     1441 gatagtaaca ttagttgttt gtgataccat cgctttactt tatacctgta ggtaatggct
     1501 gtcacatcta gaagcatttt tgcaatgtct tgaactttga aattgtggtc aaggtttatc
     1561 tcaaccggca tttctttgat tttcaaattt aatgcactag caatagtcag caattccacg
     1621 tcaaatgcat agcgcttgac aagcataatt ctaaaaattg ttcttaaagc agctcctttt
     1681 ccggctttca agcctgactg agtatccttt acctttagcc caatagagag tcggactaag
     1741 gaattaaaca ccctactaag aaactttcgt gataaaggtg cctttacctt ggattgcgga
     1801 tgcattttag atgctataac tagatcgcaa ttttcaagtt ctgtgatata atcttttatc
     1861 ttgtcatgcg agatatctaa atcgccatct acaaatatca ctaaattgcc tgaggattgc
     1921 ataactccag tcttaacagc atagcctttg cctctatttg gaatatagga aatcaccttc
     1981 atggatgaat ctaacttttc ttctttttga agaactctaa aggtattatc aaagctaccg
     2041 tcatctacca caactatttc ataacttcta agagttgaat tgagaatccc ttttattctt
     2101 gataacaaaa cagatattgt tttttcctga ttgtggactg gaatcactac agagatatga
     2161 gtttttattc tgtatacctc cggctttaca gtgtctattg attctgaaga aaaatctttc
     2221 ttatcagata ttatcatctg taaatc
//
LOCUS       DASQSJ010000214         3913 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_224331, whole genome shotgun sequence.
ACCESSION   DASQSJ010000214 DASQSJ010000000
VERSION     DASQSJ010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3913
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224331"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            434..2566
                     /locus_tag="VE223_04205"
     CDS             434..2566
                     /locus_tag="VE223_04205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HZC20827.1"
                     /translation="MNKDNNEVKEIFERVISGKEDKVITEEAAKQILTYYGVKVPSYA
                     LVSSADDAEKKAKELGFPLVAKIVSPQILHKTDEKGVKVGLNSELQVRETFNEMYGRL
                     SKKFNVKGMLIEKMVPKGITELIVGLQNDPQFGPVIMLGLGGIFTEIFKDISFRVLPI
                     NKEDAMEMIESLQGRQILKGFRGADPVNIDVLSNALVNIGKLGIDMAPYYDSIDFNPV
                     IAYANDYYVVDAKIILREKPEIEPISKAQPDSSYMDLFFNAKSIALIGASPEQGKIGN
                     SVLESLVKHEYKGKVFPVNAKGYSEIMGIKAYKGLDDIKEQIDVVVVTVDLKFVPDLL
                     RACGRKGIHNMVVISGGGKELGGERAAIEQQIKELSSRLKIRIIGPNCIGVFNGENRL
                     DCAFQGHERMLRPKKGDVAFLSQSGTVGIAFMENSDAFGMSKMISYGNRSDVDEADMI
                     WYLSEDPATKVIGLYVEGFGDGRKFMNAAKKVIIERKKPVVVFKNGRSSRGAKQAASH
                     TGSLGGSYMVVKGAFDQAGIISVDSYEELTGSLKALTWQPVPQGNRIAMVTNGAGPII
                     AAIDHFDRLGLRVAEIGDQTKNLLREHYPPTYVIGNPCDITGSASADDYRFAIQAFID
                     DPNVDIIMPWFVFQDDPLEETIVDVLADFQKKKQKPILVGAMGGPFTEKVSRRIEDAN
                     VPVYFSVITWVTAAASLVNWFKVSTRFK"
     gene            2659..3009
                     /gene="erpA"
                     /locus_tag="VE223_04210"
     CDS             2659..3009
                     /gene="erpA"
                     /locus_tag="VE223_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HZC20828.1"
                     /translation="MESAEQTKLITVTPKAAEKVAEFMKQEGKDNLLLRVYVSGGGCS
                     GLSYGMGFEEKPDEDDRVIEENGVKVLVDSYSQRYLKGANIDYIDSLMGSGFKINNPN
                     VTKSCSCGHSFSTE"
     gene            complement(3075..>3913)
                     /locus_tag="VE223_04215"
     CDS             complement(3075..>3913)
                     /locus_tag="VE223_04215"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HZC20829.1"
                     /translation="TDIPAPDVYTGGKEMSWIMDTYSALKGNFVQPELITGKPLAIGG
                     SLGRNEATGRGLSFTVREAAEKLKINMKTATVAVQGFGNAGQFAAQLVEEQGAKILAV
                     SDSKGGVYNKNGLQAGALRKHKEKTGSVVGFTGAKAINNEDVLETDCTILIPAALENQ
                     ITKKNAGKISAKIVAEAANGPTTPEADEILYKNKTLVIPDVLANGGGVTVSYFEWLQN
                     LRREYWSENEVNERLDRNITNAFLNVYDTHEKYGVDMRKASILLAVTRVVEAIKIRGL
                     WP"
BASE COUNT         1216 a          730 c          853 g         1114 t
ORIGIN      
        1 ctatgactat aacaaaccaa taggtaaatg catagtatgt tatactttat ccgaatggca
       61 ctgttatgtt tgtaacaacg acttctgcga agctcatttc caagatcata agcaaaaaaa
      121 tctatgtact aagacgagta catgaatcac gacataagaa attaattatc cattattaaa
      181 attatttgat cgcaattgcc gataggcttg taatgatctt ctgctgctgc ccctcctgct
      241 ccatcactac cgatgaagca ctaacttggc attgtttagt atgagtatta atatgtaaaa
      301 ctatcctact gaccgaactg aactttacat gcgaacattc caacatctag ggtgtataat
      361 tgaacgtaac gcacgcacta aagcacgtaa agttaattag aaccactcct gacttgttct
      421 caggtttaaa tgaatgaata aagataataa tgaagtcaag gaaatctttg agagggttat
      481 ttctggcaaa gaggacaaag taataacaga agaagctgca aaacaaattt tgacatatta
      541 tggtgttaag gttcctagtt atgcactagt ttctagcgct gatgatgctg aaaaaaaggc
      601 gaaggaacta gggtttcctt tggtagcaaa gatcgtttcg cctcagatct tgcacaaaac
      661 cgatgaaaaa ggcgtaaaag tcggcttaaa ttctgagttg caggtccgcg aaacgttcaa
      721 cgaaatgtac ggtagactgt caaagaagtt taatgtcaag ggcatgctta tcgaaaaaat
      781 ggttccaaag gggattactg aattaattgt aggattgcag aatgatccgc aattcggtcc
      841 ggttattatg cttggcctgg gaggaatatt caccgaaatt tttaaggata tatcattcag
      901 ggttcttcca ataaataaag aagatgcaat ggaaatgatt gagagtctgc aaggtaggca
      961 aattttgaaa ggctttagag gtgctgatcc agtcaacata gacgttttaa gtaatgctct
     1021 tgtgaatatt ggaaagttgg gaattgacat ggcaccttat tacgatagta ttgatttcaa
     1081 tcccgttatt gcatatgcaa acgactatta tgttgtagac gccaagataa ttttacgaga
     1141 aaaaccagaa attgagccta tttcaaaagc ccagccagat tcaagctata tggacttgtt
     1201 cttcaatgcc aaatcaatag ctttgatagg tgcatcacct gaacaaggca aaataggaaa
     1261 ttctgtcctt gaaagccttg taaagcatga atacaagggc aaagtattcc ccgttaatgc
     1321 aaaaggatat tcagaaatca tgggtataaa ggcatacaag ggtcttgatg atattaaaga
     1381 acaaattgat gttgtagtag taactgtcga tctgaaattt gttccagatc tgctgagggc
     1441 gtgtggaaga aagggaattc ataacatggt ggttatctcg ggtggaggaa aagaacttgg
     1501 tggagaacgc gcagccattg aacaacaaat aaaagaatta tcaagccgat taaaaataag
     1561 gatcatcggg cctaattgca taggagtatt taatggagaa aatagactag actgtgcatt
     1621 ccaaggccat gaaagaatgt taagacccaa gaaaggagac gttgcattct tgtcgcagag
     1681 tggaactgtt ggcattgcat ttatggaaaa ttctgatgcg tttggtatga gcaaaatgat
     1741 ttcatacggg aatcggtctg acgtagacga ggcagatatg atctggtatc tttccgagga
     1801 tcctgctacg aaggttattg gactttatgt agaggggttc ggggacggcc gcaaatttat
     1861 gaatgctgcc aaaaaagtaa taatagaaag aaaaaaacca gttgtggttt tcaagaatgg
     1921 aagaagtagc agaggggcca agcaggcagc ttcacatact ggttcgcttg ggggttctta
     1981 tatggttgtt aagggagcat ttgatcaggc aggaattatt tctgtggata gttatgaaga
     2041 gctcacggga tccttaaaag cccttacttg gcagccagtt ccgcaaggaa acagaattgc
     2101 gatggtaaca aatggtgcag gtcccattat cgccgccata gatcactttg atagactagg
     2161 tttgcgggtc gcggaaattg gagatcaaac caagaattta cttagagaac attatccgcc
     2221 aacgtatgta atcggtaatc cgtgcgacat caccggctct gccagtgcag atgactatag
     2281 atttgctata caggcattta tagacgaccc aaatgttgat atcattatgc catggtttgt
     2341 gtttcaagat gacccgttag aggagaccat tgtcgatgta cttgctgatt tccaaaagaa
     2401 aaaacaaaaa ccaatactag taggggcaat gggcggaccc tttacagaga aagtttccag
     2461 gcggattgag gatgcaaatg tgcctgtata tttctcggtc ataacttggg taacggcagc
     2521 ggcaagcctc gtgaattggt tcaaagtcag tacacgattc aaataatagt ggatcgggat
     2581 taacgcgaac atgcatttaa ttttttcaga agttagaaaa gaaaacttct tatattttaa
     2641 tagcgaaagt taatcgaaat ggaaagtgca gaacaaacca agcttataac agttaccccc
     2701 aaggccgcag aaaaagtagc tgagtttatg aagcaagaag gcaaagataa tcttcttcta
     2761 agagtatatg tctcgggcgg aggctgctct ggtttgtcct atggtatggg ttttgaagaa
     2821 aagcccgacg aggatgatcg tgtgatagaa gagaacggcg taaaagtttt ggtagatagc
     2881 tatagccaga gatatctaaa aggagcaaac attgattata ttgacagttt gatgggatct
     2941 ggattcaaaa ttaataaccc caatgtgaca aaaagctgct catgcggaca ttcatttagc
     3001 acagaataaa agaataaaaa taagatattg taaatctttg aaattgccct ccagagattc
     3061 tatctatcaa aggcctaagg ccaaagacct cttattttta tagcctctac cactctggtg
     3121 accgctaaca atatactcgc tttgcgcata tcgactccat atttttcatg agtgtcatag
     3181 acatttaaga aagcattcgt tatattcctg tcgagtcgtt catttacttc gttctcgctc
     3241 caatactccc ttcgaaggtt ttgtagccat tcaaaatacg ataccgtcac accgcccccg
     3301 tttgcaagaa catcaggaat caccaaggtc ttgttcttgt ataaaatttc atccgcctct
     3361 ggtgttgtag ggccgtttgc agcctctgcc acaatcttgg cagagatttt tcctgcattc
     3421 ttttttgtta tttggttctc aagggctgca ggaatcaata tcgtgcaatc tgtttcaagt
     3481 acatcttcat tgttgatggc ttttgcacct gtgaacccta ctactgaacc tgtcttttct
     3541 ttatgttttc tcaacgctcc ggcctgaagg ccattcttat tatagactcc acccttcgaa
     3601 tctgacacag ccaagatctt tgctccttgt tcttccacta actgcgccgc aaactgacca
     3661 gcattgccaa atccttggac tgccactgta gcagttttca tattaatttt tagtttttct
     3721 gctgcctctc tgacagtaaa agataatcct cggcctgttg cttcgtttct tcccaaggat
     3781 cccccgatgg ccagaggttt gcctgttatg agttccggct gaacaaaatt ccctttaaga
     3841 gcagagtatg tgtccatgat ccatgacatt tctttaccac cagtatagac atctggtgca
     3901 ggaatgtccg tgt
//
LOCUS       DASQSJ010000215         3162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_529367, whole genome shotgun sequence.
ACCESSION   DASQSJ010000215 DASQSJ010000000
VERSION     DASQSJ010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3162
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529367"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(267..512)
                     /locus_tag="VE223_04220"
     CDS             complement(267..512)
                     /locus_tag="VE223_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20830.1"
                     /translation="MIDSKRECAQQRIENLLRTNSSRSYSKEEIINLTSSGIASQEKI
                     EEILGEIEVWSSMKDVKSPIFSSCKGGTVYFQWGRVP"
     gene            complement(714..2996)
                     /locus_tag="VE223_04225"
     CDS             complement(714..2996)
                     /locus_tag="VE223_04225"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HZC20831.1"
                     /translation="MTDKVGTTPENVRSIYKKSLINISEFRKIVNRPLTLSEKILVGH
                     FAKMGKTEPQPGKSYVFLKPDRVALQDVTGQMTILQFMQAGLKRTALPTTVHCDHLIQ
                     ARVEGESDTKAAIYENNEVYKFLESASRKYGMGFWKPGAGIIHQVVLENYAFPGGLMI
                     GTDSHTPNAGGLGMVAIGVGGLDAAETMAGMDWELLYPKRIGVYLTGELNNWTAPKDI
                     ILYVASRLTVSGGTNAIIEYFGPGSKSISCTGKATITNMGAELGATCSIFPYDERMET
                     YLRATGRSGISDLANEYIEILTEDAEIENDPKKYFDHIIQINLSELGPHVVGPHTPDL
                     ARPVSQMAEDVKKNGYVDEISVALIGSCTNSSYEDMSRAANIAEQARSKGAKIKVPLL
                     VTPGSEMVRATIERDGQVESMKSIGATVLANACGPCIGQWSRPELKKGEPNTIVTSYN
                     RNFPGRNDGRRETMNFIASPEIVIALALGGRLSFNPFVDEITAKDGTKFKLDPPKAAP
                     EVPQDGFKSVKDVYIPPSDDPDNIDVIINENSSRLQKLEAFPRWDGKDFQNLPILAKV
                     QGKCTTDHISPAGAWLMYRGHLDKISDNMLLGAVNAYTQGVGTGKNVLTGEIEKTFPQ
                     IAREYKRIGLKWVIVGDRNYGEGSSREHAAMSPRYLGCAAVIAKSFARIHETNLKKQG
                     ILALTFEDAYDYDKVMEEDRMSILGLRDLQPGKPVRCYLHHKDGKMDEISLKHSYNES
                     QIEWFRSGSALNVLHTKENC"
BASE COUNT          864 a          685 c          558 g         1055 t
ORIGIN      
        1 acagtgatag tagtagtata gacatctata gtagaattga ttgttaacaa gtgaactgca
       61 acacgagctg gaatttttga taaaaaaatt tttaatcctc atctagcagc tttctactgc
      121 agtttctcat aatcaaaagc aagcaaatat agttaatgct agtcctgata gttattaggt
      181 atttgaattc cgttaccggt tcccatgaca agacagagca gcagaaaata atgatatcta
      241 cattaaccca ggttctatca atttttttat ggaacacgtc cccattggaa gtagaccgta
      301 ccgcctttac atgatgaaaa tatgggtgac tttacgtctt tcatagaact ccacacctct
      361 atttcaccca agatttcttc tattttttct tgtgatgcta ttccagacga tgtcagattt
      421 attatctctt cttttgaata tgatctagaa gaattagtcc tcaataaatt ttctattctt
      481 tgttgggcac attctctttt gctatctatc ataattccaa tgtgctgacc ggattatttt
      541 atataaacaa ttctctcgct tctattatac tacaattaac agaagcaatc taaaatatta
      601 aatattattc cctcaggcag gtaacttgaa actgatgcca aaatgttcgc actaaaccat
      661 aaaccagaat gccgaaaaat cactaccttt ggaatgcaga atagaataat aatttaacaa
      721 ttttcctttg tgtgcagaac attaagggcc gaaccagaac gaaaccattc tatttgtgat
      781 tcgttgtagg aatgcttgag acttatctca tccatctttc catccttgtg gtgcaaataa
      841 catcgtacag gttttccggg ttggagatct cgtaggccta atatactcat tctatcttct
      901 tccatgactt tgtcataatc atatgcgtct tcaaaagtca aggccagtat gccctgtttt
      961 ttaagatttg tttcatgaat tctagcaaag cttttggcaa taactgcagc acatcctaga
     1021 tacctgggac tcatggctgc atgttccctg ctacttccct ccccataatt tcgatcgcct
     1081 acgataaccc atttcaaacc tattcgttta tactctcttg caatctgagg gaatgttttt
     1141 tcaatttcac ctgtgagaac atttttgcca gttcccactc cttgtgtata ggcgttaaca
     1201 gcgccaagta gcatgttgtc acttatcttg tcaagatggc ccctgtacat cagccaggcg
     1261 ccagcaggag aaatatgatc tgtagtgcac tttccttgta cctttgcaag aattgggaga
     1321 ttttgaaaat cctttccatc ccatcgagga aatgcttcga gtttctgtaa tctgctgcta
     1381 ttttcattta ttattacatc aatattgtcg gggtcgtcag atggcggaat gtaaacgtct
     1441 ttgacgcttt tgaaaccatc ctgaggaacc tccggtgcag ctttaggagg atccaattta
     1501 aattttgtac catccttagc ggttatctcg tcaacaaaag gattaaatga caaccttccg
     1561 ccaagcgcta aagctataac tatttcaggg cttgcaatga aattcattgt ctctcttctc
     1621 ccatcatttc tcccaggaaa gttcctgttg tatgatgtaa cgatagtatt tggttctcct
     1681 ttctttagct ccggtctgct ccattggcct atacatgggc cgcatgcatt cgcaaggaca
     1741 gtagcaccaa ttgacttcat ggattcgacc tgtccatctc gttcaatagt ggctctcacc
     1801 atttcagaac caggagtcac aagaagaggc acttttattt ttgctccttt tgatctggct
     1861 tgttctgcaa tgttagctgc acgtgacata tcttcgtagg aagaatttgt acaggatcct
     1921 atgagtgcaa ctgaaatttc gtctacgtag ccattctttt ttacgtcttc tgccatctgt
     1981 gagacaggcc gtgcaaggtc tggggtatgt ggtcctacta catgggggcc tagttcagaa
     2041 agattaatct gaattatatg atcaaaatat ttttttggat cattttctat ttctgcatct
     2101 tcagtcagta tctcaatata ttcatttgcg agatcagata ttccactgcg gcctgtcgct
     2161 ctaagatacg tctccattct ctcatcgtat gggaaaatcg aacatgtagc accaagctca
     2221 gctcccatat tggtgatagt cgcctttcca gtacagctaa ttgattttga accgggtcca
     2281 aaatattcta ttattgcgtt tgtaccacca gacacagtaa gtcttgaagc aacgtataga
     2341 atgatgtctt ttggagcagt ccaattgttg agttctcctg tcagatatac accaatgcgc
     2401 tttggataca aaagttccca atccatccca gccattgttt ctgcagcatc caatcctccc
     2461 acacctattg caaccatacc aagtcctcct gcatttggtg tgtgtgaatc ggtccctatc
     2521 atcagacctc cggggaacgc atagttctca agtaccactt gatgtatgat tccagcgcca
     2581 ggcttccaga aacccatgcc atatttccta gaggcagatt ctaggaactt gtaaacttcg
     2641 ttattttcat atattgcagc ctttgtatca gattctccct ctacccgtgc ttgtattagg
     2701 tgatcgcaat gtaccgtagt aggaagagcc gttcgtttta gccctgcttg cataaactga
     2761 agtatagtca tctgtccggt gacgtcttgt aacgccactc tatcaggttt taaaaagaca
     2821 taacttttgc ccggttgtgg ttcggttttt cccatctttg caaaatggcc tactaatatt
     2881 ttttcactta acgtaagggg cctattaaca atttttctaa attctgaaat atttattagt
     2941 gattttttat aaattgaacg tacattctct ggagttgttc ctaccttatc ggtcaatatg
     3001 cgatatacct cccaaaaata ccttgacaaa aatgtaataa gaattattcg ggatgtttga
     3061 tagatgactt tgtatcatct atgttttgaa aggcatacca aagttttcat tgcaatttac
     3121 tatgttcttg aaataaaaat gctcaactat acaaagaatt ta
//
LOCUS       DASQSJ010000216         5443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_410903, whole genome shotgun sequence.
ACCESSION   DASQSJ010000216 DASQSJ010000000
VERSION     DASQSJ010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5443
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410903"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..452
                     /locus_tag="VE223_04230"
     CDS             <1..452
                     /locus_tag="VE223_04230"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HZC20832.1"
                     /translation="VMRLNNKYAKPIFVTENGIADKHDKYRGQFIVAHIEQMKRAIDN
                     GANVIGYLYWSMTDNYEWQESYRPEAKFGLFKIDKDSKNSGTDREQHLKRQVTKGAEA
                     LKLIIKESVNQDKTTTITDSAISRAKTDYGIFTADGSSIVISSHTKL"
     gene            975..1667
                     /locus_tag="VE223_04235"
     CDS             975..1667
                     /locus_tag="VE223_04235"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HZC20833.1"
                     /translation="MDSKDRDTTITLSRSFYDLTQAISKDTPIYPGDPQPCFEPSSTI
                     ERDNYNVTRIIMGSHSSTHVDAQKHFIMYGNSIDMEPLSKFLGESIVVDLSEKRSIGE
                     GITCSDLEAYSKGIKNDDILLIYTGTSEYWMKDQNIKYNFTYLEPSAAQWIVDHHIKC
                     VGIDTFSVEKYGSKEGLSHKILLSSSVGIIENLNSNLKNLSGKRVFLVCLPLLLEGVD
                     GSPTRTIAFDVL"
     gene            1739..2152
                     /locus_tag="VE223_04240"
     CDS             1739..2152
                     /locus_tag="VE223_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZC20834.1"
                     /translation="MIVKRNWRDAHPTIAHQSGLDWRLLSSATKTSGDIEEPGLDPKC
                     RCLKAITYVSYAKLQPSLSYEPHHHEDHEEVYYIINGTGKIKMGNEESRLRDGDIVYI
                     PENTTHSIINDGEQMIDFLAFGGFTGKEKNKQNKQ"
     gene            2462..3409
                     /locus_tag="VE223_04245"
     CDS             2462..3409
                     /locus_tag="VE223_04245"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HZC20835.1"
                     /translation="MKSIQIKRYGSSDVMEVNNTTLASNPSRGKILVSVKAAGVNPVD
                     WKIREGYMQQMAPLQFPSTLGMDFSGVIERVGENIPSDFKQGDEVYGQASVLRGGSGA
                     FAESALVDKDTIAHKPKTLDHVQAAGLPLVGVSAWQALVENMELSKDKKILIHGGAGG
                     IGSIAIQLAKHLGAHIATTAVANDKQFVQELGANQVIDYKTEKFEDIIHGYDAVFDTV
                     GGETYKRSFVVLKKGSGIIVSMLEQPNSELMNQYGVKALFQFTQLNRERLTKLAEWVD
                     QNNIKVNVDKTFSLDQAAKALDYQRDVHPRGKVVLTVRS"
     gene            3809..3988
                     /locus_tag="VE223_04250"
     CDS             3809..3988
                     /locus_tag="VE223_04250"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HZC20836.1"
                     /translation="MKTLTCRDAGFDCAAVIKGDTEDEIMQKAGEHARNEHNIRPEDM
                     TPELQQKIKGLIRSS"
     gene            complement(4898..5134)
                     /locus_tag="VE223_04255"
     CDS             complement(4898..5134)
                     /locus_tag="VE223_04255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20837.1"
                     /translation="MVQNKDLEEKKLSGSGGYAPDKLTEQEDIKARLGIPQIFLGNAG
                     RLNEDRFTKYYCNKCQKEYAGSPVISYESIQMKN"
BASE COUNT         1904 a          907 c         1041 g         1591 t
ORIGIN      
        1 tagttatgag gttaaacaac aaatacgcta aaccaatttt tgttaccgaa aatggtattg
       61 ctgataagca tgacaaatac cgtggtcagt ttattgtagc acatattgag caaatgaaaa
      121 gagcaatcga taatggagca aatgttatag gatatttata ttggtctatg acggacaact
      181 atgaatggca agaatcttat agacctgaag caaagtttgg attatttaaa attgataagg
      241 atagcaaaaa cagtggaaca gatcgggagc agcatcttaa aagacaagta accaaaggtg
      301 ccgaagcact caagcttata ataaaagaat ctgtcaacca agacaaaact acaacgatta
      361 cagattctgc tatatcaaga gcaaagactg attatggaat atttacagct gatggttcaa
      421 gcatagttat tagctcacat acaaaattgt aggtcatctt caagagctgc cctggcgatt
      481 tcgtccacat ctcgtcttgc tgttggatgt taagatcaca aacaatgatt tacctgagaa
      541 gaatttacct ttagatttgg cagctattgc gactttatct gacaatagga aacaaattag
      601 ttgatggatt tactgacacg tttttcaatg tagtatttag ctgaagtgta ctaaaaaata
      661 gtttgttcca ctcaatgcat gtcataggga cctctccatt acatcaagga taatcctatc
      721 taattctttc atatgtcatg taaaacaacc aaccaaaaaa tactgtaaag gagaagatgc
      781 ttaattgatt ccttatttga agaaacaatg tgatagatcg actttccgag gtgaataata
      841 ttataatcga aaaatagtaa atatactaca aatgtaatag gaatacagat cgtatgagta
      901 aacaagagtt ccaaataagc aagctatttg aatggacaac tttaactcat ggcaaggtgt
      961 cgtaataaag caaaatggat agcaaagata gagatactac aattacactt tcaagatcat
     1021 tttacgactt aacacaggcc ataagtaaag atacaccaat atatccaggt gaccctcaac
     1081 catgttttga gccatcttct acaatagaaa gagataatta caatgttact cgtataatta
     1141 tgggctcaca tagtagtact catgtagatg ctcaaaagca tttcataatg tacgggaaca
     1201 gtattgatat ggaacctctt agtaaatttc ttggcgaatc tatagtagtt gatttatctg
     1261 aaaaacgtag cattggagag ggaattacat gctctgatct ggaagcatat tcaaaaggta
     1321 tcaagaatga tgatatctta ttgatttata ccggtactag cgaatattgg atgaaagatc
     1381 aaaacatcaa atataatttt acttatcttg aaccttctgc cgctcaatgg atagttgacc
     1441 atcacataaa atgtgtcggt attgatacat ttagtgtcga aaagtatggc tctaaagaag
     1501 gattgtcgca caagatattg ttatcaagct cagttggaat aatagagaat ctgaactcaa
     1561 atttaaagaa ccttagcggc aagagagtat ttctagtttg tttgccattg ctactcgaag
     1621 gtgtcgatgg gtcaccaact agaacaatag catttgatgt tttatgagtt tttgataatt
     1681 ttatgtaacc ataaaataac ttgttgtatt gcatttatta ttcaggaaga aatcgactat
     1741 gatagttaaa agaaactggc gtgatgcaca tcctactata gcccatcaaa gtgggctaga
     1801 ttggagattg ctttcatcag caactaaaac tagtggcgat atagaagaac ctggactaga
     1861 tccaaagtgt cgttgtttga aggctataac atatgtttca tatgccaaat tacagcctag
     1921 tctttcatat gaacctcatc accacgagga tcatgaagaa gtatattata taataaatgg
     1981 gactggaaag attaagatgg gaaatgaaga gtctaggttg agagatggcg acatcgttta
     2041 cattccagag aatactacac attctattat aaatgacggc gaacaaatga ttgacttttt
     2101 agcatttggt ggctttaccg gaaaagaaaa aaataaacaa aataaacaat agcaggatta
     2161 atatacgtga tactctgata tccacaatcc taagtaaata ttcacaatgg gatagatata
     2221 caaaaaagtt tgaaatgatt acttttagat ataaaacctt gaaggctatt ctccaggtaa
     2281 ctgatgatga agcattaatt aggaaagctc gtgaataaca agaactcaaa catactgttc
     2341 cttgattgaa gatagactat atcaactgca tctgcaaatg aagtgctagc agctttggtg
     2401 taattagttc agcagagaaa tataactgga ctttaatact tcttatttgt tatataacat
     2461 tatgaaatca atccaaatta agagatatgg tagtagcgat gtaatggagg tcaacaatac
     2521 aacattggca tcaaatccat ctcgaggaaa aattctagtt agtgtaaagg cagccggggt
     2581 aaatcctgtt gattggaaaa ttcgtgaagg atatatgcag caaatggcac ccctacaatt
     2641 cccgtcgact ttgggaatgg acttttcagg cgttatcgaa cgcgtgggag aaaatatacc
     2701 ttcagatttc aaacaaggcg atgaagtata tggacaagcc tcagtcttaa gaggtggctc
     2761 aggagcattc gctgaatcag ctttagtaga caaagatacc atagcacata agccaaaaac
     2821 actagaccat gtacaagcag caggattacc gcttgttggt gttagcgctt ggcaggcact
     2881 agtagaaaat atggagttat caaaagataa aaaaattctg attcatggtg gagcaggggg
     2941 aataggttct atagcaatac aacttgcaaa acatctaggt gcacatatag caacgacagc
     3001 agttgcaaat gataaacagt ttgtacaaga attaggagct aaccaggtaa tagactacaa
     3061 aacagagaaa tttgaagata taatacatgg ctatgatgca gtttttgata cagtaggtgg
     3121 cgagacatac aagaggtctt ttgtagtatt gaagaaaggt agcggcatta ttgtttctat
     3181 gctagaacaa ccaaattcag agctaatgaa ccaatatgga gtcaaagcat tatttcaatt
     3241 tactcagcta aatagagaac gattaactaa attggcagag tgggtagatc aaaataacat
     3301 aaaagttaat gtggataaga cattctcact agaccaagct gctaaggcgc tcgactacca
     3361 aagagatgta catccaagag gtaaagtagt acttactgta agatcctgaa attaactaaa
     3421 attaaactaa ggagaaacac ttcaggcaca tccatcgcca ctttatctaa tttggattga
     3481 aggctgccaa ctaataccag aaaaatactg ggattttttg ggttaagcta taagcatggc
     3541 cattcatcaa ttatgctaga aaagactttg cataacaaga aggatagcga taaacaacaa
     3601 gaataagcac aggcttgcaa attataatga tcagatatcc tgcaataaat tggattatta
     3661 ttattattct ttttgtatgg catccatctt gtacagtgct gcatatactt agggagtatt
     3721 catgtattga ggctcatgat tttaaaagtt caaaggtaac catagctctt ataagtatag
     3781 aggacccctt acagtctgca ggtagaatat gaaaactctg acatgtaggg atgcaggatt
     3841 tgattgtgct gctgtgatta aaggagatac ggaggatgaa attatgcaaa aggcgggaga
     3901 gcatgctaga aatgagcata atattagacc agaagacatg acccctgagc tacagcagaa
     3961 aataaaggga ttaatacgtt ctagttagac attctctcta ttttttggaa tctcttggaa
     4021 tcttaagtta tctcgcttta aggttacaat acgccacgca ggttttattt caatttgaag
     4081 gaattaaaca tgagctattg aaacacttgc ccatatcgct ttctggatac ccatcaacgc
     4141 caaaaaattg atatatcata ggcggcgcgt tcacaccagc ccttattagc tatagcagtc
     4201 acacgtggta tgacagctgg gcttagttga cttatagtct catgataatt cacctgaggt
     4261 actcttgtaa tctcggaatt ggagtagttg ttgttgaagc ctgtatttgt acccattttc
     4321 aaatctatat ctccaaaccg atagggaact gaagatgaaa accgtatagt acctaataaa
     4381 gatccagtaa tgatgaggtt atctattaac taactggctg cagtctatga caattatata
     4441 ttactccagc agagttacag atgtagaatc tttagaccta acaaatcaaa aagcgcaggt
     4501 ccaaggttat tgaaatcata tcccgaggca aacccagtcg tcatagaagg aaataacaaa
     4561 caaataaaca gtcaatatta gcaatatcaa acttttgaag acggatctgt ttttacactg
     4621 tctgaaaatg ctcttgaaag tcccttaagt gtgtgagtct acataataat gatgatgata
     4681 tggttgtttt aattgtaagc ccgtgagcaa ggcagctggt gtgaggatga ccctctcatt
     4741 tttctttaat aaactgctat ttctttatac taaaaattta cttatagaaa attgtgaaaa
     4801 ggcagatcaa cctattgcta gagttatttt ctagtactat tattgtctat tgaacccgca
     4861 tctgtattct ccctttcaat aaggacaaca tcttgtccta attcttcatc tggatactct
     4921 cataactaat tactggagaa ccagcatatt ctttttgaca tttattgcaa tagtattttg
     4981 tgaatctatc ttcattcagc ctgcctgcat tgcctagaaa aatttgagga atcccaagcc
     5041 tggctttaat atcttcttgt tctgttagtt tgtcgggagc ataacctcca gatcccgata
     5101 atttcttttc ctccaagtct ttgttttgaa ccatatatat catgtccaaa tctataattc
     5161 tagttctatc ttttcccttg taagaagtgc tcgagtaagg ctatcttgcg gtacttgcat
     5221 ctagaggaaa aaacgtagat attatataat ctctcactga taatactatc atgaactaac
     5281 atgtatttac aaacaaaaaa taaaagaaag agaatttccg aaatactggc cattgttgca
     5341 atgatattgt tactaacgta cattgccgat gcagctgtag cacaaggcaa taaacagggc
     5401 ttcttgccaa tgagcgcagc ccaaagaggg atgatatttg gtg
//
LOCUS       DASQSJ010000217         3653 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_529423, whole genome shotgun sequence.
ACCESSION   DASQSJ010000217 DASQSJ010000000
VERSION     DASQSJ010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3653
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529423"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            466..1311
                     /locus_tag="VE223_04260"
     CDS             466..1311
                     /locus_tag="VE223_04260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20838.1"
                     /translation="MATIENGIKLRNSGFRIAFVGLFSLITGFVIYYRLTIPSGEQPV
                     MITSYLKNLANAIFILTIASMISIGYGAVRVFKAERQITYNTNSLMSYITTVFTDNKY
                     WKIMIMSTTGYGIFFGFLSQIFIYRGDISFTAAGIPIPSISVVTCCNIPGYVPLFAAY
                     ITNHFLILLIPINIILAVVISVLVGFNISLNLFAYKMMKVQGTRKLTFFESIGITTGL
                     FVGCPTCAGSLFSALFGFGSGGTAVALLAPFQTLFIIISIPALIISPFLIARLIRART
                     ICKLY"
     gene            1666..2838
                     /locus_tag="VE223_04265"
     CDS             1666..2838
                     /locus_tag="VE223_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HZC20839.1"
                     /translation="MSAISDANEFQNNVSHNSSLSKSSTHNRILVLCIDRDDDIGSKG
                     GIETPIVGRDHCINAGIRLAIEDPEDADTNAIFAAIKSYEQLISKGYESEVALVSGKF
                     NRGIEGDEKISFEIQSILTQYKADAAVLVSDGEDDQTVIPIIQSLIPIISIQRIIIKH
                     SRSVEYSYAVLGRYIKMLVYDPRYSKFFLGVPGALLVASGLATVFGLTREAIALSLSI
                     LGGAFIIRAFDIDKSLASLGRPTPTAFIRIFSVFAGTLIILASIANGLSSIPAESITP
                     NMGLVDIIKDRVIVGSFVHGTITLLWIGIATILVGALLSNWFKGSVTAMSDILRLVVL
                     ALLYFPILQFTSVLTERTSPFTLISSLLIGLAVTLVAATFLFQYFRNRKGGEVLKH"
     gene            2923..>3653
                     /gene="uppS"
                     /locus_tag="VE223_04270"
     CDS             2923..>3653
                     /gene="uppS"
                     /locus_tag="VE223_04270"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HZC20840.1"
                     /translation="MGISEFGGMAFAETILKHSGLYSIYERRLGSRILKDPLPNHIAI
                     ILDGNRRWSKYHFAGIYSGHSIGADKAEELLNWIHDLGIRITTLYVLSTENLERKDEE
                     LDNIYGVLRIKLEKLYNDSRIHKRQMKIKAIGNITLLPKPLQEILTKLEEVTASYNSM
                     FLNIAIAYGGQKELVEAIRKISRMVKSGIIDEKEIDEKVIESCLYTSHLPQPEPDLIL
                     RTSGEKRLSGFLIWQSAYSELVFMDV"
BASE COUNT         1137 a          631 c          685 g         1200 t
ORIGIN      
        1 tattctctaa taagagaagt tacatattct catggtattt atgataggtg atttacgtta
       61 aattctgtat acattggaga gccattctac acaaaaagta aagcagatta taatcacgtc
      121 atttgtctat aatcttatga caatatcaat agctatctgt caatagcggt ctcgcgatag
      181 tgatagatcc tctcctaaag tgctattatt ttataaaagc agaaaattca ggaagaagtc
      241 agaaagcagt ttgttataac ttgtttgatt ttgtcctttc ggctcacgac gtgttttaac
      301 cataaagtca catgttttaa ttaaattgcc tcagcattgt taatctatct cactgataat
      361 aaggtataat gatactgaga ttagtattat attgtaaatg atggtatctt cggatcttaa
      421 accgataaat ttaatttctt atagtatgag ttgttatgat gactaatggc tactatagaa
      481 aatgggatca aactccgtaa cagtggcttt agaattgcct ttgtaggatt attttctcta
      541 attacgggat tcgttatcta ctatagatta accattcctt caggagaaca accagttatg
      601 attacatcgt acctcaagaa ccttgcaaat gctattttta tactcactat tgcatcaatg
      661 atatccattg gttacggcgc agttagagtc tttaaagcag agcgacagat aacatataat
      721 acaaacagtt tgatgtcata tataacaaca gtatttacag ataataaata ttggaaaatc
      781 atgattatgt ctaccactgg atatggcata ttttttggat ttctgtccca gatctttatt
      841 tacagaggag acatttcatt taccgcagct ggaatcccta taccatcaat cagtgttgtt
      901 acttgctgta atattccagg atacgttcct ttgtttgctg catatatcac gaaccatttt
      961 ttgatcttgt tgataccgat caatattatt ttagcagttg tcatatctgt gttagttgga
     1021 ttcaatatct ctttgaatct atttgcatac aagatgatga aagtgcaggg caccagaaag
     1081 cttacttttt ttgaaagcat tggtataact acagggttgt ttgtaggctg tccaacatgt
     1141 gcgggcagtt tgttttctgc gttatttgga tttggctcag gaggaacagc agttgcgctg
     1201 cttgcgccgt ttcaaaccct ctttattata ataagcattc cagctttgat aatttcacca
     1261 tttcttattg cccgactaat tagagcaaga actatctgta aattatacta aggtgattca
     1321 tttttctttg attttgtcaa tagattttgt tattctgcga ttttttgagg aaatatctat
     1381 tcctttggat tcctcactgt ggcgatcact caaaagttgc tgtacctgaa ttacaagtat
     1441 tatacatata cggttgcagc aagatattaa gaaagcatgt atcttttggc tatgcatctt
     1501 caatggtggc tacctctgga tcttctggta tacattgtga tatatgttat ttagttactc
     1561 atttcacgag atctcgaatg ccatgtcata tacacatacc tattatagac cctcagaata
     1621 aattaattaa caggtaaatc atactgataa gttgtaatga tatagatgtc tgcaatatct
     1681 gacgctaatg aatttcaaaa taacgtctct cacaacagta gtttatcaaa gtcttctact
     1741 cataacagaa ttctcgtctt atgcatagat agagatgacg atattggttc taaaggaggt
     1801 atagaaactc ccatcgtagg aagggatcac tgcattaatg ccggaattag gctggcgatc
     1861 gaagatccgg aagacgcaga tactaatgca atatttgcag cgattaaatc atatgaacaa
     1921 ctcataagta aaggatacga atcagaggtt gctttggtct ctggaaagtt taatcgtgga
     1981 attgagggtg atgaaaagat tagttttgag attcaaagta ttctaaccca gtacaaggca
     2041 gacgcagcag tacttgtttc tgatggagag gatgaccaga cagtcatccc tataattcaa
     2101 tcgttgattc caatcatatc tattcaacgt atcattatta agcacagcag gagtgttgaa
     2161 tactcatatg ctgtcctagg cagatacatc aaaatgctcg tatatgaccc gcgatattca
     2221 aaattcttcc taggcgttcc aggtgcatta ttagttgcaa gcggccttgc tactgtattt
     2281 ggattgacaa gagaagccat agctttatca ctaagcatac taggaggcgc ttttattatt
     2341 cgcgcctttg atatagacaa atctttagct tctcttggaa ggccaacgcc aaccgcattt
     2401 attagaatct tctcggtttt tgctggcact ctgattatat tagcttcgat agcaaacgga
     2461 ctttcaagca ttcctgctga atcaattact ccaaatatgg gacttgtgga tataataaaa
     2521 gatagagtaa tcgttggaag ttttgttcat ggtaccatta cattgttatg gattggaatt
     2581 gctaccatat tagtaggtgc tctattgagc aattggttta agggcagtgt tacagctatg
     2641 tcagatatct tacgcctagt agtattagca ttgctctatt tccccatcct gcaatttact
     2701 tcggttttaa ccgaacgtac gagcccattc actttgattt cctcgcttct aataggtttg
     2761 gcagtaacac tggtagctgc cactttctta ttccaatatt ttagaaacag aaaaggagga
     2821 gaagtcctca agcattgata ttgattcaat taaaatttct tttgataata ataacaacaa
     2881 taacaataaa atcattgttt gacatgcgaa acttatactt aaatgggtat atcggaattc
     2941 ggtggcatgg cttttgcgga aacaatcctc aaacatagcg gactttacag tatttatgag
     3001 cgtcgattag gatcacgaat tctaaaagat ccacttccta atcatattgc aataattcta
     3061 gacggaaata ggaggtggtc aaaatatcat tttgctggta tatatagtgg tcattccatt
     3121 ggtgctgaca aagcagaaga gcttttgaat tggattcatg accttggaat cagaatcact
     3181 accttatacg ttttatctac agagaattta gagagaaaag acgaggagct agataacatc
     3241 tacggggttt tacgcataaa gcttgaaaag ctctataatg attcaagaat acataagcgc
     3301 caaatgaaaa tcaaggcaat tggtaatatc acgcttcttc ctaaacctct tcaagagata
     3361 ttaaccaaac ttgaggaagt tacagctagt tacaactcta tgttccttaa tatagccatt
     3421 gcttatggag gacaaaagga gcttgtggaa gcgattagga agatctctag aatggttaaa
     3481 tccggaataa tagatgagaa ggaaattgat gaaaaagtga tcgaatcatg cctttataca
     3541 tcacatttgc cccaaccaga acccgattta atactaagaa cgtcgggaga aaagcgtctc
     3601 agtggatttc tcatatggca aagtgcgtat agcgaattag tatttatgga tgt
//
LOCUS       DASQSJ010000218         5169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_251058, whole genome shotgun sequence.
ACCESSION   DASQSJ010000218 DASQSJ010000000
VERSION     DASQSJ010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5169
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251058"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(184..1143)
                     /locus_tag="VE223_04275"
     CDS             complement(184..1143)
                     /locus_tag="VE223_04275"
                     /inference="COORDINATES: protein motif:HMM:NF020129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HZC20841.1"
                     /translation="MSDIAKYDIGSSGEYTQGAGAVAILVKENPRILAFDKKVTSTII
                     KNEYDFYRPCGKETPLVNGNYSNLLYLIQVRKAFDSYKEKAIRTGLISIKDDESITDY
                     IDLFSVHLPYRKMGEKALAYLLRHEWRHLPRWNYVIKEVAMEEPLPKDPRGTIESILA
                     DTEFMKADEKFRRAFVQTSFYNEIFEKKMASSLQASSIIGNLYTASMYMGFRSLLEFE
                     YKKGTDLEAKRVGFGSYGSGSSAMVFSGVIQPQYKEIVKRMNLEVEIGPRKKVSMEEY
                     GKLHENGISFNDSILQTNKEFVLAKIGGSTADKAGLREYIYVN"
     gene            complement(1140..1580)
                     /locus_tag="VE223_04280"
     CDS             complement(1140..1580)
                     /locus_tag="VE223_04280"
                     /inference="COORDINATES: protein motif:HMM:NF013333.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20842.1"
                     /translation="MQVGIDDLSIYVPKLYVDYKDFAEARGIAPQKLEHGIGIKKMAL
                     ADTNQDPACMAANACLKLMQRNHLQPKDIGRMYVATESALDESKAMNSFVIGMLEQVY
                     GEGSFEHAGGIECKFACVSGSYALYDNTNWIRAEENNGKPLLSL"
     gene            1875..4667
                     /locus_tag="VE223_04285"
     CDS             1875..4667
                     /locus_tag="VE223_04285"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase I"
                     /protein_id="HZC20843.1"
                     /translation="MSHHQEEYFLTEKRKRFDDMQELPENRPAILLSSIYSGDDKKIY
                     LKFYDMKDNTIYFWHDRTNHKPYCYTKMQYNNTLQKIVQKENKYTLEQTHKRDIISDK
                     EINVVKIIAPDPLSIGGTENSIREKVTSWEADIKYHENYLYDTGLIPGTYYIRKGEEI
                     KQFEYQISNQVQQALKNLLWNRIKEEDAEKIDYKNDKNEYQQYTTRWAELLNQPIPDL
                     RRISIDIEVESEEGRIPTPRDHDRPVIAVGFVGNDGFKKVLVLEQQQDKSNNLSNSVP
                     LIPEAEICYTEKELLQKAFKIIKAYPIVITYNGDDFDLPYLYARSQDPRIDPVGKVSI
                     QKSEIPIIIKRESFIKRGNQAEPVQIRHGLHIDLFRTFQNRSVQIYAFSHKYSEHTLN
                     AICEALLNDSKIEFEGDIGELPIQKLAQYCIKDAELTFKLTSFNDNLLVKLLVVIARI
                     SRLSIDDIARFGVNQWIRGMLYYEHRQRNMLIPRRDELQAKGSASTTAIIKEKKYRGG
                     LVVEPVLGIHFNVVVVDFASLYPSIIKVHNLSYETVNCPHQSCKNDSNQHIQSTTHWI
                     CKEKRGLTSLLIGSLRDLRVNYYKHLSKNRTLSFEERQLYNVVSQAIKVILNASYGVM
                     GAEIFPLYCLPVADATAAIGRSTTTKTIEKCKEIGIDVIYGDTDSLFLKNPSNAMVDE
                     ISTWARSNLGVDLETDKKYRYVVFSELKKNYLGVLEDGTVDVKGLTGKKSHTPPFIRH
                     AFYNILDILSKVNSEKDFESAKEKIKNIIQEYARNLEARKIPPADLSFNVMVNKSPAK
                     YGKKITTTSNDTTTTKSSSTMAIARTKATSLDGNDREVENYKGLPQHIKAAKLLVDTG
                     KEIKAGDIISYVKTKTGDGVKPVELVNLEEIDTEKYLEAMEATFDQVLSSLNFNFKSI
                     LGKPHQSNLDELFWRK"
     gene            4829..>5169
                     /locus_tag="VE223_04290"
     CDS             4829..>5169
                     /locus_tag="VE223_04290"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HZC20844.1"
                     /translation="MKKTTATSNAALEFLQPLFIVPEKTKARYSFADLPVKISFNQSN
                     VVVYGIPIDITTSFGKGTSRGPEAIRLTSARQIETYMLDEKLDIYEKIKIYDLGDLKI
                     PKQIEGIRGEG"
BASE COUNT         1799 a          909 c          910 g         1551 t
ORIGIN      
        1 ggtatcagca gtagcaatat ttagagaaga ttggaagaat gcaaacggtc agaatcccaa
       61 agaaatacac actgatgctt tgaggacata cagagaaggt gtttcacagt acttttctaa
      121 tattaacact gccgatgtag catcggatga gtaaatagga tgccaacaca tgagtgagtc
      181 atgttagttg acgtagatat attctcttaa tcctgctttg tcagcagtac tgccgccaat
      241 tttcgccagt acaaattctt tattggtttg taaaatggag tcattaaagc ttattccgtt
      301 ttcgtgtagt ttaccatatt cttccataga gacttttttt cgaggtccga tttctacttc
      361 aagattcatt cgttttacta tctctttata ttggggctgt attacaccac taaaaaccat
      421 ggcactacta ccgctaccat aagatccaaa gcctaccctc tttgcttcta gatcagtacc
      481 cttcttatat tcaaattcaa gcaaacttct aaatcccata tacatcgaag ctgtatatag
      541 attcccgata atagatgatg cttgaagaga actagccatt ttcttttcaa aaatttcgtt
      601 gtagaaggat gtttgtacaa aagctcgtct aaatttttca tcagctttca taaattcagt
      661 atcagcaagg attgattcaa ttgtgcctct aggatctttt ggtaatggtt cttccattgc
      721 tacttctttt ataacataat tccatctagg aaggtgccgc cactcatgtc ttaataaata
      781 cgctagcgcc ttttcgccca tttttctata aggaagatgg acactgaata aatcaatgta
      841 atctgtgatg gattcgtcat ctttaatact aatcaaacct gttctaattg ccttttcttt
      901 ataactatcg aatgccttcc tcacctgaat taaatataat agattagaat agtttccgtt
      961 gacaagagga gtttcctttc cacatggtct atagaaatca tactcattct tgataattgt
     1021 agaagtaact tttttgtcaa aagctagtat cctaggattt tccttaacta gaatggcaac
     1081 tgctccagcg ccttgtgtat actctcctga tgaaccaata tcatatttgg caatatcact
     1141 cacaatgaca atagcggctt accattattt tcttctgctc taatccaatt tgtattatcg
     1201 tataatgcat aagatccact cacacatgca aatttacact caattccgcc tgcatgttca
     1261 aaagaacctt ccccataaac ttgttctagc attcctatta caaaagaatt cattgcttta
     1321 gattcgtcca gagcagattc ggtagctaca tacattcttc cgatatcttt gggttgtaaa
     1381 tgatttcttt gcattaattt caagcaggcg ttagcggcca tacatgctgg atcttgattt
     1441 gtatcagcta atgccatctt ttttatgcct atgccatgct ctagcttctg tggagcgatc
     1501 cctcttgcct cagcaaaatc cttatagtca acatagagtt tgggcacata tatagataag
     1561 tcgtcaatcc ctacttgcat tttacaaaga ctatatgcat agcaatttaa aggtatttct
     1621 gggttagatt gaacaatgct acataggaac aataaagaca atataaaata tgttgattga
     1681 gttgtgcact tgtaacctta tgttacaata tgacaaaaca aattgccatt acgaagtcgt
     1741 cgtgcaatca ttaaaaaaat tttctttcat aattactatc tggctaacaa tagattataa
     1801 tgtagacaca tacattgttt agtttagaca tcaaactttt aatatgattt gtaaatgaaa
     1861 gtagataata cacattgtct catcatcaag aagaatattt tttgacagaa aagagaaaaa
     1921 gatttgatga catgcaagag ctgccagaaa atagacctgc aatattacta tcatcgattt
     1981 attctggaga cgacaaaaag atctatctga aattttatga tatgaaagat aataccatat
     2041 atttttggca cgatagaact aatcataagc catactgtta taccaaaatg cagtataata
     2101 atacacttca aaagatcgtt caaaaggaaa acaaatacac actagaacag actcacaaaa
     2161 gagacattat ttctgataag gagatcaatg tagttaaaat aattgcacca gacccattat
     2221 cgatcggagg tactgaaaat agcataagag aaaaggttac ttcatgggaa gcggacataa
     2281 aatatcatga aaattatctt tatgatactg gactaattcc aggtacatat tatattagaa
     2341 aaggagaaga gatcaaacag tttgaatacc aaatttctaa tcaagtccaa caagcattaa
     2401 aaaacttgtt atggaataga ataaaagaag aggatgcaga aaagatagat tataaaaatg
     2461 ataaaaatga atatcaacaa tatactacaa ggtgggcaga acttctcaat caacctatac
     2521 ctgacctaag aaggatttct attgatattg aagttgaatc tgaggaaggc agaataccca
     2581 ctcctcgcga ccacgataga ccggttatcg cagtcggttt tgttggaaat gacggcttca
     2641 aaaaggtact agttttggaa caacagcaag acaagtctaa taatcttagt aatagtgttc
     2701 ctttgattcc agaagcagaa atttgttata cggaaaaaga attattacaa aaagcgttta
     2761 aaattataaa agcctatcca atcgtaatta cttataacgg tgatgatttt gacttgccat
     2821 acctgtatgc taggtctcag gatccgagaa tcgatccagt tggcaaagtc tccatccaaa
     2881 aaagtgaaat ccccatcata atcaaaagag agtcttttat aaaacgtggt aatcaagctg
     2941 agccagttca aataagacat ggattgcata tcgatttgtt taggaccttt cagaaccgat
     3001 cagtgcaaat ctatgctttt agtcacaaat actctgagca tacgctcaac gcaatttgcg
     3061 aagctttact aaacgatagt aaaattgaat ttgaaggcga tattggcgaa ttgccaatac
     3121 aaaaattggc acaatattgt attaaagatg ctgaactgac tttcaaatta actagtttca
     3181 atgataattt gttggtgaag ctgttggtag tcattgcaag aattagtagg ttatctatag
     3241 atgacattgc acgttttggc gtaaaccagt ggataagggg gatgttgtat tacgaacatc
     3301 gccagagaaa tatgcttatt ccaaggcgtg atgaactgca agcaaaaggc agtgcttcaa
     3361 ctactgcgat aataaaagaa aagaagtatc gcggtggatt agtagtagaa ccggtccttg
     3421 gtattcattt taatgttgtt gtagtggatt ttgcaagtct atatccaagc atcattaaag
     3481 tacacaatct ctcatacgag actgtaaact gtcctcatca atcttgcaaa aatgattcta
     3541 atcagcatat acagagcact acacactgga tatgtaaaga aaagagagga ctaacttctc
     3601 ttttgatagg ctcgctacgg gatttaagag tcaactatta caaacacttg tctaaaaata
     3661 gaacactttc ttttgaagaa cggcaattat ataacgtagt tagccaagca atcaaggtaa
     3721 ttcttaatgc cagttatgga gttatgggag ccgaaatatt tccactgtat tgtttgcctg
     3781 ttgccgatgc aactgctgct ataggtagga gcaccactac aaagacaatt gagaaatgca
     3841 aagaaatagg tattgatgtg atatatggag atactgactc tcttttctta aaaaatccct
     3901 ctaatgcgat ggttgatgaa atatctacgt gggcaagaag taaccttggc gtggatcttg
     3961 aaacagacaa gaaataccgt tatgtggtat tcagtgaatt aaagaaaaat tatctaggtg
     4021 ttctagaaga tggtacagta gatgtcaagg gccttactgg aaagaaatcg catactccac
     4081 catttatacg gcatgcattt tacaatattt tagatatttt aagcaaggta aattcagaaa
     4141 aggattttga gtcggctaaa gaaaaaatca aaaatattat ccaagaatat gccagaaact
     4201 tagaagcccg aaaaatacct cctgcagatc taagttttaa tgtgatggta aacaaatcac
     4261 ctgccaaata tggcaagaag atcactacta ccagtaatga tactactaca acaaaatcgt
     4321 catcaacaat ggcaatagct cgtaccaaag caacttcgct agacggcaat gatagagaag
     4381 ttgaaaatta caagggcttg ccacagcata tcaaggccgc aaagctactg gtggatacag
     4441 gaaaggagat taaggcagga gatattattt catatgtcaa aacaaaaaca ggagatggcg
     4501 tcaaacctgt agagctagta aatttagaag aaattgatac tgaaaaatat cttgaagcta
     4561 tggaagcaac attcgatcag gttttatcat ctttgaactt taattttaag tcgatcctag
     4621 gcaagccaca tcaatcaaac ttagatgaat tgttttggag gaaatgatag tagctgtaag
     4681 tgcgtcatcc taaatatcaa aaattcttcc gttatgaaat aaaaactaca tcattattca
     4741 tgttaacatg atctcaacat tcttttccta gactaggaaa agtgaaaaag catttaatgg
     4801 atgtagtgtg atttatccat taataccttt gaagaagacc actgctacca gtaatgctgc
     4861 tcttgaattt cttcaacctc tattcattgt ccctgaaaaa acaaaagcaa gatatagttt
     4921 tgcagatctg cctgtcaaaa tttcatttaa tcaatcaaat gtagtagtct atggtattcc
     4981 tatagatatt acgacaagtt ttggaaaagg cacatcgaga ggtcctgaag caattagatt
     5041 aacctctgca cgccaaattg aaacctatat gcttgatgaa aaattggaca tttatgaaaa
     5101 aatcaaaatt tacgacctcg gagatttaaa aattccaaag cagatagaag gaatacgagg
     5161 agaaggtaa
//
LOCUS       DASQSJ010000219         7069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_184383, whole genome shotgun sequence.
ACCESSION   DASQSJ010000219 DASQSJ010000000
VERSION     DASQSJ010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7069
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184383"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            649..1014
                     /locus_tag="VE223_04295"
     CDS             649..1014
                     /locus_tag="VE223_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC20845.1"
                     /translation="MKRVLIVDDEPDITFALKKGLECNEFEVDTFNDPFVALSGFKTN
                     LYDLLLIDVKMPKMNGFELYQQMQKIDNKVRVCFITAFEVYYMALREIFPNLEICCFI
                     RKPIEMSDLVKRIKIELAI"
     gene            complement(1680..2072)
                     /locus_tag="VE223_04300"
     CDS             complement(1680..2072)
                     /locus_tag="VE223_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-5A"
                     /protein_id="HZC20846.1"
                     /translation="MSKPMDLGSLKVGSYIVIDGEPCRIVSYDHSKPGKHGSAKARVA
                     AIGVFDGSKHSLVSPVSSNVEVPLIDKRNGQVISISGKTLQIMDLETFEVFDTSSIED
                     DMRDKLMQGGEVEYWKVLDRIKIVRAKG"
     gene            complement(2293..2895)
                     /locus_tag="VE223_04305"
     CDS             complement(2293..2895)
                     /locus_tag="VE223_04305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20847.1"
                     /translation="MDSAEGGVQGYICTPHEGHSAPLLDCWKKSDNINVVYFVTATFS
                     CEILPYFPNKANHYILASFKRMQSALEDIKKQNNTRLSFIFRLNDALFERAADKLNYI
                     SIYFTKYTYGDTEIGDLAIAVAKRDRVKKASLANVQVINTGPLKFVFPYSKNAVVLEV
                     EGEKTRQSDQKYCELTRRDVARRGLLLSNLVSFSILDKLK"
     gene            complement(3160..4038)
                     /locus_tag="VE223_04310"
     CDS             complement(3160..4038)
                     /locus_tag="VE223_04310"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HZC20848.1"
                     /translation="MEKVTIGIPTFNEGENILNLLRALETDTPKDYFISEIIISDDSS
                     DDTPEKVYGFLTSSSLNIKFIHHNSRRGAAAAWNEIFERSMGDIIVLYDADIIVGQRC
                     TERLVSSIWGKIGLCASNPNPIQVKGIAAGASIFISDWLRSVRNIQLSQYTVMGRAMS
                     IRSDIAKKISIPNDIIAIDLYVQCKVLEYGFDVVYNDNAVVYFYPPTRISDFVSQVVR
                     ATNGHRQIRDCISRFKINLPEDVRAIEILRNMFINPFGALSVIVCCALIPFYKVKLKE
                     TNSAKWHTAKSTKQFV"
     gene            4277..5245
                     /gene="hemB"
                     /locus_tag="VE223_04315"
     CDS             4277..5245
                     /gene="hemB"
                     /locus_tag="VE223_04315"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HZC20849.1"
                     /translation="MQTQLIADLEYKKILDAVGMRKKHLIFPIFVQEGQQEESQIITM
                     PGIAKTPLKKITQQIHKVINAGISSIVIFGIPENRDMKGAIALDKDGVVQKAVAAIRK
                     EFGNMLNVITDVCVCQYNFSGQCGLVNNNKVDNDSTLELISKIALGHAEAGADVVAPS
                     SMMDGQVYSVKKSLKRHGFQKTKILSHSVKQLSSLYSPFRTAAFSKICQFNTIDKSSY
                     QIAHTNPRQILREVQTDINEGADMVMVKPGLPSLDVICMIKEKFAFPIAAQNVSGEYA
                     MIKAAATYGWIEEEPWKVTAIASIKRAGADRIISYFSMDLSKYLED"
     gene            complement(5527..6246)
                     /locus_tag="VE223_04320"
     CDS             complement(5527..6246)
                     /locus_tag="VE223_04320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20850.1"
                     /translation="MSNDDEVRTNVEKNIPFVHSIQKTKRSKAELFDNIVGHHDVKKL
                     FTMSFLSEKPVHILLVGPPASAKTLFMLECMKLERSYFTLGSHSTRSGMLDYLFEKRP
                     RYLLVDEIEHMPIKDQTALLSLMETGIIAETKFQRTRSTQLKTWIYATSNSTDRLLSP
                     LLSRFLVLHFRQYKYENFHEVAVHLLCNQGTTREMAASIAEAVWSKMKSKDMRDCIKI
                     GHLAKTKEDINWIVETLKNYK"
     gene            6600..6754
                     /locus_tag="VE223_04325"
     tRNA            join(6600..6637,6700..6720,6740..6754)
                     /locus_tag="VE223_04325"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6634..6636,aa:Tyr,seq:gta)
BASE COUNT         2335 a         1304 c         1226 g         2204 t
ORIGIN      
        1 ctgaggcgca agttcaaatg ggtcgaaaat tataatgcta gtgatttaaa acgtttctac
       61 cagatacaaa aagaaatacc gggtcaagaa gttaatccag ttcagcaaga aactcaaaac
      121 aatcccaaac aagacgaata gatacaattt gcaatatgaa gtcattatta tgagatcctt
      181 cagagcaaca aagaaaccag catctatcaa tctaatcaat caaccagcag agatggaaaa
      241 tcgcatataa tagaagaccg ttttcagaac taataatggc taaatgtttg ctttccattc
      301 ttacaaggga ggcatgggca aagtaactgc taaactgcca gcattgctat caaaaaagat
      361 accttctatt tttacttgac ctagtgtgta tataccatct cttcaaatat gttttggtaa
      421 ggaaccaaaa agtttctaag tgacattgct caagttgaag acgcaataat ggatcttcca
      481 ctggtgaccg acaaatatca tgatattgca aagctcatcg taatggagat attatctcga
      541 tcgatacaag cattggaatt cttgaacgct cgtttccaaa ttatctctat gattaaggga
      601 ttttacataa atgactcaaa tatcgtggta tcatagtagg ttactgtaat gaaaagagtt
      661 ttaattgtag atgatgaacc tgatattact tttgcattaa aaaaaggtct agaatgtaat
      721 gaatttgaag ttgatacttt caatgatcca tttgtagcgt tatcaggttt caagactaat
      781 ttgtatgatc tactacttat tgatgtgaaa atgccaaaga tgaatggctt tgaattgtat
      841 cagcaaatgc aaaaaataga caacaaagtt agagtttgtt tcattaccgc atttgaggtg
      901 tattatatgg cattaagaga gatttttcct aatttagaaa tatgttgctt cattcgaaag
      961 ccaatagaaa tgagcgattt ggtaaaaaga ataaagatag agctggcaat atgagaaccc
     1021 atattatgta atttgcaact taatcaactc tttaaatctt ttcttaaaat gatgttccac
     1081 tttctaagaa acacttagaa ttgcaatagt cacagtatta tctgagaaaa agcatcttga
     1141 ctcgttgtag tgaaagaaca ttatttgcca gagtagattt gtggcgtcac aacctcaact
     1201 aaaaattgat actctatact atctaaaact aaaattaaca aaaattgata gtctctggtt
     1261 agcttttcac catttccata gttatcgact ttaacttagc taccatttaa ctagctgcga
     1321 gtcaaatcgt tttagtaaga tatctgtctc cacgctttgg cctcagtcta ggtgttttta
     1381 attatgtcct caatagcttg gctaaggtta agcatgcatc tcttcttggc ataccgctct
     1441 accaatgtta gctgggaggg tgtgaaacaa atgggcatcg ttctcttaac gttattcaca
     1501 ataacatact cgatatggaa tattataatt ctttctatac gtgcccatca gatgtattct
     1561 atgcatactg cagttgaaag tgggtttcct agaaaaatcg gacctttgca attaagatag
     1621 ccacaatatt catcctttgt tcgtagcctt ggaagtattt aagtgaacaa aaaaaggggt
     1681 taacccttag ccctcacaat ttttattcta tcaagtacct tccaatattc tacttctcca
     1741 ccctgcataa gcttatctct catatcatct tctattgaag atgtgtcaaa aacttcaaac
     1801 gtctcaagat ccataatttg gagtgtcttg ccggaaattg aaataacctg accatttctc
     1861 ttatcaatta gaggaacctc cacatttgat gacactgggg aaacaagact atgtttagaa
     1921 ccatcgaaaa ctcctattgc tgccactcta gctttagcag aaccatgttt tccaggtttg
     1981 ctatgatcat atgatactat tctacaaggc tctccatcaa ttacaatata tgagccaact
     2041 tttaggctgc caaggtccat tggcttactc aatacttatc agaaaatatc ttcgcgccac
     2101 tataataaaa aaataacgta atggactagc gtctagaatt gaattataca aaaactagta
     2161 aaaagatcac ttttgatgca gttcatggaa atactaggtg aagaaattat taactgttat
     2221 cagttcaaga ctcaaaaatg taacactcat ttctacaggc gagtaaggaa ttgcaactct
     2281 tgagttgttc tattatttca gtttgtctag aatagaaaaa ctgaccagat tgcttagtaa
     2341 aagacctctt cttgctacat cccttctagt taactcgcaa tatttctgat cactctgacg
     2401 cgttttttcc ccctcgacct caagcactac agcattttta gagtaaggaa atacaaactt
     2461 tagtggccca gtatttatga cttgaacgtt tgctaggcta gctttcttta ctcgatccct
     2521 ttttgccacg gcaattgcga gatcgccaat ttctgtgtca ccataagtat atttggtaaa
     2581 ataaattgaa atgtagttaa gtttatccgc cgctcgttca aacagagcat cattcaatct
     2641 aaatataaac gacaatctgg tgttattctg tttcttaata tcttctaatg cgctctgcat
     2701 gcgtttgaaa gatgcgagaa tataatgatt tgccttattt ggaaaataag gcagaatttc
     2761 gcaagaaaaa gttgcagtaa caaaatatac gacgttaatg ttgtcagact tcttccaaca
     2821 atctagaaga ggagccgaat ggccttcatg tggtgtacat atgtaaccct gtacacctcc
     2881 ttctgcgcta tccaagctag aacctaattg tcttgcatag gtatatatag tatgttctga
     2941 aaactgattg tctaagaatt agaacgataa ctctagagaa tgtcattagc atctgctagc
     3001 tacatctatt gctgcagttt ttaacgattt tttcgtaaga tgtttgagcc ataaaatgtt
     3061 cgtaactaac aggatataaa tcccaggtac caatcctaaa agacaagcta tttgaacaag
     3121 cggagtatca gatatcaaga tctcgtatta gacaaaatcc tatacgaatt gtttagtgct
     3181 ttttgcagta tgccatttag cagaattggt ctccttcaac ttgactttat aaaacggaat
     3241 gagtgcacaa cagacaatta ctgaaagcgc tccaaaaggg ttaataaaca tatttcgtag
     3301 tatttcgatg gcacgaacat cctctggtaa attgattttg aaccttgata tacagtctcg
     3361 gatttgcctg tggccattag ttgctcttac cacttgagat acaaaatcag atattctggt
     3421 tggtgggtaa aaataaacta ctgcattatc attgtatacg acatcaaaac catattctag
     3481 aaccttgcac tggacataca gatctattgc aattatgtca ttaggtattg agattttttt
     3541 ggcaatgtca gaacgtatcg acatagccct ccccattaca gtatattgtg aaagttggat
     3601 gtttcttaca gatcttagcc agtctgaaat aaaaatcgat gcaccagctg ctataccttt
     3661 cacctgaata ggatttggat ttgatgcaca gagccctatt tttccccata tggatgacac
     3721 caaccgttct gtgcatcttt gccctactat gatatctgca tcatacaaca ctataatatc
     3781 acccatggac ctttcaaaga tttcattcca tgcagctgcc gctccccttc tactattatg
     3841 atgtataaat ttaatattta atgaggaact tgtcagaaat ccatatactt tctcaggagt
     3901 atcatctgag gaatcgtcag aaattatgat ttcagaaatg aaataatcct ttggagtgtc
     3961 tgtttctagg gctctaagaa gattaagtat gttctctcct tcattaaatg tcgggatgcc
     4021 gatggttact ttttccaatg ccggggatgt gcttaaagac tataaatatc atatctggta
     4081 ataccttagt cctcagattc atacttttgt ttgctaaaag actaatcatg catgcatgta
     4141 tgaacgttta tgcaattttg ttaaaacata ttcaataata tcaactaaaa atctaatggc
     4201 agtaggatat cagtgctaaa gaataaacaa aataataaac tattcataga tccatattca
     4261 acacaatata aagtcattgc aaactcaact catagctgat ttagaataca aaaagattct
     4321 tgatgcggtg ggcatgagaa aaaaacacct aatctttcct atcttcgttc aagaaggaca
     4381 acaagaagaa agtcaaatta tcacaatgcc cggaatagca aagactccgc taaaaaagat
     4441 aacccaacag atccataaag taattaatgc tggaatttca tcaatagtta tttttggtat
     4501 accagaaaac agagatatga aaggagccat cgctctagat aaagatggtg tagttcaaaa
     4561 agcggtggcg gcgataagaa aagaatttgg aaatatgttg aatgtaatca cggatgtctg
     4621 tgtatgtcaa tataattttt caggacagtg tggattggtt aacaacaaca aagtggataa
     4681 tgattctacc ttggagttaa tatccaaaat tgctcttggc cacgctgagg ctggtgcaga
     4741 tgttgttgca ccctcctcga tgatggatgg tcaagtatat tctgtaaaga aatcacttaa
     4801 aagacatggt tttcaaaaaa ctaaaattct ttcccattct gttaagcaat tgtcctcatt
     4861 atattcgcct tttagaactg ctgccttttc aaaaatatgt caattcaata caatcgataa
     4921 atcatcatat caaatagcac acacaaatcc caggcagata ttaagagaag tacaaactga
     4981 cattaacgag ggagcagata tggtgatggt aaagcccgga ttaccatctc ttgatgttat
     5041 atgcatgatc aaagaaaaat ttgccttccc tattgcggca caaaatgtat caggggaata
     5101 cgctatgata aaggctgctg caacatatgg atggattgag gaagaaccat ggaaagttac
     5161 tgctattgca tcaataaaaa gagccggagc agatcggatt atttcatatt tttctatgga
     5221 cctatccaaa tatttagagg attaatgaga taaatatgtg cacgtcatac gccctgatgg
     5281 ctgtgctgac gtatcctgat cgataattga taacgccatt atgtaatgta ggaaaggaaa
     5341 aggtaagtca tattgcgata tatacgagac acaataaata gtaccctagc tgcgatgata
     5401 ttgacataac tgttagaacc cacaatccga taatcaattg tgcttccagg tactccttta
     5461 aattcaacac ctaacgttag caggtgaacc ttgacctggc ctcatagaga tttaaaaagt
     5521 gagcaatcat ttgtaatttt tgagagtttc aacaatccaa ttgatatctt ccttggtctt
     5581 tgcaagatga ccgattttta tacaatctcg catatcttta gacttcattt ttgaccacac
     5641 cgcttcagca atagatgcag ccatttctct ggtagttcct tgattacaaa gtaagtgtac
     5701 agccacttcg tgaaagttct catatttgta ttgtctaaaa tgcagtacca aaaaccttga
     5761 caaaagcgga ctcaacaatc tatcagtact gttgctagtt gcatatatcc acgtcttgag
     5821 ctgtgtgcta cgagtccttt ggaactttgt ttcagcaata atgcctgttt ccattaaact
     5881 gagaagagct gtctgatcct tgattggcat atgctcaatt tcatccacaa gcaaatatct
     5941 gggtcgtttt tcaaatagat aatctaacat tcctgacctt gtactatgac ttccgagagt
     6001 aaagtaagag cgttctaatt tcatgcattc taacataaag agtgtcttag ctgatgctgg
     6061 tggaccaact agcagtatat gaacaggctt ctctgataag aaagacatag taaataactt
     6121 tttaacatca tgatgtccga caatattatc aaaaagttcg gcttttgacc tttttgtttt
     6181 ttgaatagaa tgaacaaacg gaatgttttt ttctacatta gtacgtactt catcatcgtt
     6241 cgacacaaac gttttatgca gatcagtgat ataggttttt tgtgatgtta aacttaattt
     6301 aaagtaacta cctattctgt agtatgacgt gaagatatta ttcaacactg caatgatatc
     6361 taaacagtgg tagctgcata aattgtcatt tccgttcaat agactaaatt agtaatgttt
     6421 cgacacctta acaatcctca gcatgaataa atacgacaaa aacaaatcac agatataatt
     6481 gaaaagacat atagcattat atgtctttta agtgatttat tatcgatgca gctcgtaatt
     6541 ttcaaaaaga atgattttga gtcacaatta tataacattg ctacctccaa ccaagttgtc
     6601 ccgcggtagc tcagcctggt agagctttcg gctgtagatg tcggcctatg tgttatgctg
     6661 accacgtgaa gcagcctatc gggcatacat gttgcagtaa ccgaagagtc gcaggctcaa
     6721 acaatacatt ttggagtaga tcctgcccgc gggatactca aatctaatgt gggatttact
     6781 tcacatttcc cataaattgg tcaaacatgt acttgacata gcttagaaaa ctaggactac
     6841 atattattat acaactacgt ctaaacattg taaataatgt ctcgatataa tgtatatgcg
     6901 caacatccag cctgtagcta gtatttttag acgaatttga taataactat agtcataaac
     6961 gattataccc tgtaatatga atatcagagg aaaagtgact aactactatg acaccttaga
     7021 aatcagtaac aatgcatccc aggttgaaat aaggaagtct tttcgaacc
//
LOCUS       DASQSJ010000220         2540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_144382, whole genome shotgun sequence.
ACCESSION   DASQSJ010000220 DASQSJ010000000
VERSION     DASQSJ010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144382"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(604..1158)
                     /locus_tag="VE223_04330"
     CDS             complement(604..1158)
                     /locus_tag="VE223_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20851.1"
                     /translation="MDLRFDSLSPEQAAESNAKIIITTKDEADIVRRKDVLLDTELDK
                     YPILLKAKVLRSIMGSYHDDQLTIGIDPGKRIGISIIYLHNEIDSVVESSLNSTIQLI
                     SVLLSGIRSKKKIVRIGDGNIDMAKQIASMIKMRFSDLVDIEIVDEHGTSLPQNTDTN
                     RRGIRDKSSARTIALRRGKSFNPS"
     gene            complement(1462..1620)
                     /locus_tag="VE223_04335"
     CDS             complement(1462..1620)
                     /locus_tag="VE223_04335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20852.1"
                     /translation="MTRDSSTPHEILNLKIKDIVFKTADNRQYVEVLVNGKTGTRHIP
                     FRRSCILY"
BASE COUNT          759 a          482 c          427 g          872 t
ORIGIN      
        1 gcaaatattt tattaagcaa aaggtgaaga tgtcaaaatt tatatcataa cttattggac
       61 aaatcggaaa gtttcgtcca caatgttttt gaaatattgg ataaattgtc aggtcatcca
      121 gcaggaaagc atgagtaaga gtttaccgca gtcacgttag cagacctctg gtaaggcaaa
      181 gaccttcttc catgctacca cttctatgag aatatggaag cttccatttg agtggatatg
      241 acaacaacaa ctgtaggtat tcaacgacat catcaataag aaatgatcat agacactaag
      301 gttcgattgc ataatgacgt tattatatat gtaaagtgtc tgagaatgct tttccagaaa
      361 cagaattaat ggataaaacc cggtgcgaaa tcacacttga aaaattgaaa caagactatt
      421 ttcacggtgg acctgttctt acgataaact cttaatggac agtaatgtat tcatttacac
      481 atgtcatagc attatgaatt gtggagaatt agataggctc ttttcctaaa ttacgaacag
      541 gtgcgcattt atgaagtaaa taatctgtac tattaaaatc cccgaaatat tcttcattat
      601 acattaagat ggattgaagg acttgcctct tctaagagcg attgttcttg ccgatgattt
      661 gtctctaatt ccacgcctgt ttgtatctgt gttttgcggt aaagatgtcc catgttcatc
      721 cactatctca atgtcaacca aatcgctaaa cctcattttt atcatcgatg caatctgttt
      781 tgccatatct atgttaccat cgccgattct tactatcttc ttttttgacc ttattccgga
      841 tagcaaaacc gatatcagct ggatagtgga attaagcgaa gattcaacta cactgtcgat
      901 ctcattatga agataaataa tggatatgcc aattctcttg cctggatcaa ttcctattgt
      961 cagttgatca tcatgataag atcccataat gctccgcaaa actttagctt ttaaaagaat
     1021 aggatactta tccagttctg tatctaacag aacgtctttt cttctcacaa tatcagcttc
     1081 gtcttttgta gtaataatga tcttggcgtt agactcagcc gcctgctctg gagataatga
     1141 atcaaaccga agatccatta acttaagtgc gttaatgatt ttgtagtacg atcgaccata
     1201 aacggtggct accgtaatcc tgtgttgcaa gagctcccta atcaggggcg tttcatcggt
     1261 ataagttttg acaaaaattg ttattaaatc ttatggataa gtctgtagta atatatgata
     1321 ggctgttgct taagaatatg ttattaggaa tttttttctc attactttta gcatattatt
     1381 attgcaacat gatagtgtat tataaagtat cactacacgg ttggtcaact ctatctgtat
     1441 gcggcacgac aattagtaaa atcagtacaa gatacagctt cttctaaaag gaatatgtct
     1501 tgtacctgtt ttgccattaa ctagaacctc tacatattgt ctgttatctg cagttttaaa
     1561 cacaatatct tttattttca gattcaatat ttcgtgaggt gttgatgagt ctctagtcat
     1621 agtgtggtag cacctatcac gtttgtttag tacccacttc aaaaataata aatcgtcttg
     1681 ctgtgaccat aaattagaag gtttgtaaca actaatctcc tttcttttag ctgtttaatt
     1741 cccatgatag atacaaacag gtcttccttc tattgctgac gaccattcct tctttttgag
     1801 tcgccgatgt taggataatg gagcacttga aaaacggggt aacagcacaa gcttgtatta
     1861 cagctaccaa tccacttata taacgagtct tcattttggt tttacgacac tatctaggta
     1921 gcaaagagca tggtccttgt tatgtgaata aacttgattg caatccaaca atctttgata
     1981 actgtgataa aaactgtatt gtggattttc ataattgagc cttggattaa cctccatttt
     2041 cattgttata acgcattcat atatagtcaa tgcattttac tctgatagtc tgtttccatc
     2101 cattagtatc acttcacaaa acttggcagt attaaatccc cctatctgct aaattgattt
     2161 ccctctctag taatgataga tcattgtcct tactagacgc tatgctacta ctggacctaa
     2221 tattccagct gttgactgct tgaacgccta ccaacataat ttaatacata tgtaaaatag
     2281 ataatatcct acaatctgac agttttttga accatgtctt atatgtaatt acttatgact
     2341 tttcttcttc tgaggtacgt ttctttgtcc ccgctgtttc atcagaagtt gaaagtttta
     2401 tcttttagct tttgacgtta gaagcagctt cacccagaac catcttgaca atgctgtcca
     2461 ctgctctagc atgtgaggaa tcgatatttt ttttaaaacc tgatagactc ctgtctgcct
     2521 ctgcgataat tgtcgctgat
//
LOCUS       DASQSJ010000221         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_251253, whole genome shotgun sequence.
ACCESSION   DASQSJ010000221 DASQSJ010000000
VERSION     DASQSJ010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251253"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1334
                     /locus_tag="VE223_04340"
     CDS             <1..1334
                     /locus_tag="VE223_04340"
                     /inference="COORDINATES: protein motif:HMM:NF014447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HZC20853.1"
                     /translation="YHNFHHSLEVTCMGLQMLPKEFRGFSFTPEDYELIMIAGLLHDY
                     DPIQVMNSKDVVISGTPRQKGPKVSRTISEIWKTRILDAYFTMNATDFENYFREYKST
                     LLPPINFSTTHPEYVKIDKKPTESMIVEALIWHTDFPYDKQKYAKEKFTETVTLLEEQ
                     GYESAKIKLLGEVLWIADLVVTYMSSDPIRAWDRVTNLYNELELPKLEAVSRTDAFFS
                     DFAETKLFKELITMRQFPDIFRQRWNMIYQFFHEGNPSTQVNRIITKTKNLYLKINLE
                     IAMRRGDMLQEIATNNWAEYFIGIGKDQNEVLKAKSRFADLDPPNASAFWGDTHKLLP
                     NILDKSIDNFLMVLPQKLVSLNNNEEKVSLMSLLATIPAKLAAGGTLQLLTDLEVNSL
                     VFNDLLKIILDNGFQVDAQKNRKIYFPRGWKDADFIEGRMPQVVIFSLKQA"
     gene            1588..1662
                     /locus_tag="VE223_04345"
     tRNA            1588..1662
                     /locus_tag="VE223_04345"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1623..1625,aa:Val,seq:gac)
     gene            1697..1942
                     /locus_tag="VE223_04350"
     CDS             1697..1942
                     /locus_tag="VE223_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20854.1"
                     /translation="MVLLGAILIASFMSQLSSAQTAAQIEAKNLVAAHKNLQTGNTTG
                     VLNNILSVLDWQFKELHPKLEQQFQAANTTAAHAHHR"
BASE COUNT          748 a          379 c          452 g          686 t
ORIGIN      
        1 agtatcacaa tttccaccat agtttagagg taacatgtat gggcttacaa atgttgccaa
       61 aagaatttcg tggttttagt ttcacacccg aagattatga attaatcatg atagcaggtc
      121 tgttacacga ctatgatccg atccaggtaa tgaattcaaa agatgtagtc attagcggga
      181 cacctcggca gaaaggaccc aaggtgtcta gaaccattag tgaaatatgg aagacaagaa
      241 ttcttgatgc ttattttact atgaatgcga ctgattttga aaattatttt cgagaatata
      301 aatctacatt attaccacct ataaatttct caacaacaca tccagagtat gtcaagatag
      361 ataagaaacc cactgaaagt atgatcgtag aggctttaat ttggcacaca gattttccgt
      421 acgataaaca aaaatatgca aaggaaaagt ttactgagac ggtgaccttg cttgaagaac
      481 aaggatatga gagtgctaaa attaagctac ttggagaggt tttatggatt gcagatctcg
      541 tcgtgacata tatgagttca gatcctatta gagcatggga tagagttact aacctatata
      601 atgaattaga acttccaaag ctcgaagcgg tttctaggac tgatgcattc ttttcagatt
      661 ttgcggaaac taaacttttt aaggaattaa ttactatgcg gcagtttccg gatatattcc
      721 ggcaaagatg gaatatgata taccagtttt tccatgaggg aaatccttct actcaggtta
      781 ataggattat cacaaagacc aagaatttat acctcaaaat taatttggaa atagcaatgc
      841 gcagaggaga catgctacag gagattgcta caaacaactg ggcagaatat tttattggga
      901 tcggaaaaga tcaaaatgaa gtattgaaag caaaatcaag atttgccgat ctagatccac
      961 ctaatgcctc agctttttgg ggagatacac ataaactact tccaaacata ttagataagt
     1021 ctatcgataa tttcctgatg gtattaccgc aaaaacttgt ctctctcaat aataatgaag
     1081 aaaaggtgtc gcttatgtcg ttgttagcaa ccattcctgc aaaattggca gctggaggta
     1141 cattgcagct attgacagat ctggaagtaa atagtctagt atttaatgac ctactgaaaa
     1201 ttattttgga taacgggttc caagtagatg cccagaagaa tagaaaaata tactttccaa
     1261 gaggctggaa agatgcagac tttatcgaag gcaggatgcc acaggttgtt atttttagct
     1321 taaaacaagc atgagtgctg atgaagcaag ttaaatctgt agtctaaatg gcatgtatct
     1381 caatattgca tatcccggta tatttgtgag aagaatgccg tggcaatttg tttttcgatt
     1441 ttgacacagt tttgttagta ttaacgaatc ttaacattag tcaaatgttg ttatctctgc
     1501 gatttctttc tgtttcttgt cttttttgat cttataggcg aatatatatt taggctatga
     1561 aggaaaatta attcattcgt ggagtgcggg ccggtggtct agcctggtta agataccgcc
     1621 ttgacatggc gggggtcgtt ggttcgaatc cgacccggcc caatattgtc cctttattta
     1681 ggccaagttt tttgtaatgg tgttgcttgg tgcaatttta atagctagtt ttatgagcca
     1741 gctatcttca gcccaaactg cggctcaaat agaagcaaaa aatctggtgg cagcacacaa
     1801 gaatctacaa acaggaaata ccactggagt attaaacaat attctatccg tattagactg
     1861 gcaatttaag gagcttcatc caaagttgga acaacaattt caagcagcta atactaccgc
     1921 cgctcatgca catcataggt aatgatattg caaaatatag tatctgacag cagcacatta
     1981 gttagtacca aacatttgcc tatcaaattt aagcatgtgt ttttgatgtc aaaatgctat
     2041 agtcgagttt gtgttgttac ctgttttgac tccttgttaa aaatgacaat caaataaatt
     2101 tactaaaaag tagtttaaaa agaaaatgca atattagaac aagataatag ttttttgtaa
     2161 tggtgttgct tggtgcaatt ttaatagcta gttttatgag ccagctatct tcagcccaaa
     2221 ctgcggctca aatagaagca aaaaatctgg tggcagcaca caaga
//
LOCUS       DASQSJ010000222         2438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_503955, whole genome shotgun sequence.
ACCESSION   DASQSJ010000222 DASQSJ010000000
VERSION     DASQSJ010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2438
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503955"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VE223_04355"
     CDS             <1..625
                     /locus_tag="VE223_04355"
                     /inference="COORDINATES: protein motif:HMM:NF016925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="manganese catalase family protein"
                     /protein_id="HZC20855.1"
                     /translation="ELPLSVALESPNIHHFLVAGQSSRPVDAAGNPWSATYVYDSGNL
                     VLNMIYNLMLEATGRLQKCRLYAMSSNKAFRATVSYLIVRDLVHEKVFAKALETLGVK
                     WNKALPIPRIDTSGMPEVKELERINLHNQMWTFTNETSGLAQIFNGSSPFDDGGGKLE
                     VLEGHPEGANIPFFPDAPQEYASGLDTELRKLAQQVQTSGTTAIGKT"
     gene            925..1143
                     /locus_tag="VE223_04360"
     CDS             925..1143
                     /locus_tag="VE223_04360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20856.1"
                     /translation="MAEEEILWIFPTVNAFIRQDKMGAIPLATQEAAARRKEGRNVKV
                     RILVPINTLVEQRVQQTKRRALLLSCFF"
     gene            1347..2111
                     /locus_tag="VE223_04365"
     CDS             1347..2111
                     /locus_tag="VE223_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20857.1"
                     /translation="MRYYIKCKINSENKQRLADSINSGSLARGKIFYEGMQTALREGT
                     IDENDIVHFVEVCYCLEGGLYPMAMEIPILDEYFDDIIEVKDARLRDQCTMECEFCDC
                     TRNIKLPGKSLVNELNIKKRKDASVEDNNKEEEEEEEEEEDGDNNDFIDVGRIRLNRK
                     KQKEGLESLKNVSTCNGIDNKKIKPVFAGAAISGLFAIFYDGVDYFRIKNIPDNKESR
                     QLFHEMGFGEIYGDVNSMKLTAQDSLAKSDKRSNVV"
     gene            2184..>2438
                     /locus_tag="VE223_04370"
     CDS             2184..>2438
                     /locus_tag="VE223_04370"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HZC20858.1"
                     /translation="MMTEDLTDISSNKGNSNNSNRSRVPSSSAYNNRLENVLILQGGG
                     SLGAFGCGVFKALANNNIKLDIVAGTSIGGINAAIIAGSKD"
BASE COUNT          903 a          376 c          483 g          676 t
ORIGIN      
        1 cgagttgcca ctatcagttg ccttagaatc accaaacatc catcacttct tagtcgctgg
       61 acaaagctca agaccagtag atgctgcagg aaatccttgg tctgctacct atgtatatga
      121 tagcggaaat ttagttttaa atatgatata taatcttatg ttggaagcga caggaagact
      181 ccaaaaatgt agactatatg ccatgagtag caataaagca ttcagagcaa ctgtgtctta
      241 tctaatagtt agagatttag ttcatgagaa agtatttgca aaggcattag agacgttggg
      301 cgttaagtgg aataaggctt tgccaatacc cagaatagac acttcaggaa tgccagaagt
      361 taaagaatta gaaagaataa atctacacaa ccaaatgtgg acgtttacaa atgaaacctc
      421 tggactagca caaatcttta atggttcgtc accctttgat gatggaggag gcaaattaga
      481 agtgctagaa ggccatcctg aaggtgcaaa tataccattc tttccggatg ctccacagga
      541 atatgcttca gggttggata cagagcttag gaaattagca cagcaagtgc aaacatcagg
      601 tacaactgcg ataggtaaaa catagtacaa ctactatatc ttcttatttt caacacatgt
      661 tttgacaatt tatgatattc tatatctact aaggaagaat caatagaagg caattattat
      721 tatgttatca aactataaat aatataacaa aactaccctg acgctcttgt tatctctgca
      781 tcattgtgtt attatgtgtt ttcatctgtt agcgtatgtc atcatacaga ttattagttc
      841 aagtcgtgct gacttgacaa tgcggatatc gaagttattc caaattcatc aagagcacag
      901 gatagctact tagatattat aaagatggct gaagaagaaa tattatggat atttccaact
      961 gttaatgctt tcataaggca agataagatg ggtgctatac cattggctac acaagaagca
     1021 gcagcaagaa gaaaagaagg aagaaatgtt aaagtcagaa tattggtgcc cataaataca
     1081 ttggttgaac agagagtaca gcaaactaaa agaagagcat tgttactgtc atgcttcttc
     1141 tgatgaagat acaataatag atgatagaca taagtttact actatataaa ttgcattcag
     1201 tctgaggaat ttaatggtat ctactaccgt ttatcaccaa agcatttatc gttaatggtt
     1261 gttagacaac cgttgtatct tactataact ttctgaatgc ttaaatcgtc gaatagacaa
     1321 ttaaattcta tcaactaaac aaacatatgc gatattacat taaatgtaag ataaattccg
     1381 aaaataagca gaggttagct gattctataa actctggttc tttagcacgg ggtaaaatat
     1441 tctatgaagg catgcagacc gcattaaggg aaggaaccat tgatgaaaat gatatagttc
     1501 attttgttga agtatgctat tgcctagaag gcggattata ccctatggct atggagatcc
     1561 caattttaga cgaatacttt gacgacatta ttgaagttaa agacgcacgg ttaagagacc
     1621 aatgtacaat ggaatgcgaa ttttgcgatt gtacacgtaa tataaagttg ccaggaaaat
     1681 cattagtcaa tgaattgaat atcaaaaaaa gaaaagacgc atctgtagag gacaataaca
     1741 aagaagaaga agaagaagaa gaagaagaag aagatggaga taataatgat ttcatagatg
     1801 taggcaggat acgtcttaac agaaagaagc agaaagaagg tctagagagt ttgaaaaacg
     1861 tatctacatg caatggcatc gataacaaga aaataaaacc agtatttgca ggagcagcaa
     1921 tttctggtct ttttgcaatc ttctatgatg gtgttgatta ctttagaata aaaaatattc
     1981 cagataacaa agaatctcga caactatttc atgaaatggg atttggagag atttatggcg
     2041 atgtaaactc tatgaagctt actgcacagg attcacttgc gaaaagtgat aagcgttcaa
     2101 atgtagttta acaataacat agtcacatgt agaatcgaag actatagatg ataaaattaa
     2161 aaaatgaaaa caaataatga gaaatgatga cagaagatct gactgatatt tcatcaaaca
     2221 aaggcaatag taataatagc aatagaagca gagtgccatc atcatcagca tacaacaaca
     2281 gactcgaaaa tgtgctaata cttcaaggtg gtggttcctt gggagcattt ggttgtggag
     2341 tattcaaagc acttgcaaat aataacataa aacttgatat tgtcgcagga acctccattg
     2401 ggggaataaa tgctgcaatc atagctggca gtaaggat
//
LOCUS       DASQSJ010000223         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_411293, whole genome shotgun sequence.
ACCESSION   DASQSJ010000223 DASQSJ010000000
VERSION     DASQSJ010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411293"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /gene="gvpD"
                     /locus_tag="VE223_04375"
     CDS             complement(<1..903)
                     /gene="gvpD"
                     /locus_tag="VE223_04375"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpD P-loop
                     domain-containing protein"
                     /protein_id="HZC20859.1"
                     /translation="MRTNVSSNKKQTEKPIHIPHELMQFVQRNTYSLLIKGYAGTGKT
                     TLSLTILRTLKIKSNFFYISTRISPKQLFLYYPWLGKFVGRPKVSESNEELGHDYNLS
                     SFEDARLDEPESLFERITNQLMDVKAPIIIIDSWDAIASFMDKEARLNNERVLQTWRE
                     RAGAKLIFISEDPKDTTLDFLVDGIVELGQTFYGTIRIREIFLSKLRGVMINKPSYIY
                     SLNDGMFRSYDIYNPSDFISNANSSIAFNKIEHTVHSVFEGPHIASGYPELDTILGGG
                     FPKKGMVLVELDTTINTTVTMTFLV"
     gene            complement(1087..2154)
                     /gene="dph5"
                     /locus_tag="VE223_04380"
     CDS             complement(1087..2154)
                     /gene="dph5"
                     /locus_tag="VE223_04380"
                     /EC_number="2.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004164 - diphthine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine synthase"
                     /protein_id="HZC20860.1"
                     /translation="MLWLIGIGINGYEGVSIHTLDILKTCDIIYVDRFTGVLTDEELQ
                     GLNNLITKCDGNIIVPVQRWFVEDGREILNESKNKNIALLTYGDPLIATTLTELYVRA
                     VKRSIKVNIIHAASGITSLIGEAGLHLYKFGKTVTMMLELKSSISVYNTIFDNLLVGN
                     HTLILTEYNNNQDKLFFLDPRYVFRSLLEVEEELKYGIFSEGVFVIVASRIGIEQQKI
                     MSGKVKSLMNTDFGIGPHSIIVTGSLHFTEQDALTTLTYNVDEPLDNTLQVQKISVTM
                     VKKYAPKARYLIDQMKSAIRAESNLSINKGLNEVLDNAEYYIDDAERFLNQGKLELAV
                     LSIGYAEGLIDGVRFKKEIAY"
     gene            complement(2176..>2951)
                     /locus_tag="VE223_04385"
     CDS             complement(2176..>2951)
                     /locus_tag="VE223_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZC20861.1"
                     /translation="EEGNATGIKQLVKSKLSPDYAIFGEPSGIDNITIAYKGRLAIRL
                     TCDVGDSAHASAPWLAKNSIEEMYDFWNTIKSEINRIGARDNKANSITCSLTEITGGS
                     SHNVTPQKCKITMDIRIPTITTCEEVIDLLDGAIYEVASRKRVKATYRIEDRTEPFEA
                     NHSSPLVRALSLSILDVRKKHPTLLRKTGTGDMNILGNALKIPVITFGPGNPHASHSA
                     DERVKIEEFVSSIEVFNRALFHMSRLHQGKKVNVTKDKI"
BASE COUNT          835 a          581 c          496 g         1039 t
ORIGIN      
        1 taccaaaaat gtcatggtga ctgttgtatt tatagtggtg tctagttcca caagtaccat
       61 gccttttttt gggaagcctc ctccgagtat agtgtctagt tcaggatatc cactcgcaat
      121 atgagggcct tcaaagaccg aatggactgt gtgttctatt ttattaaatg ctatgcttga
      181 gttagcatta cttataaagt cactaggatt ataaatatca tagcttcgaa acataccatc
      241 attaagtgaa tatatgtatg atggtttgtt aatcatgacc ccgcgtaatt ttgaaaggaa
      301 tatttccctt attcttatgg taccgtagaa cgtctgtcct aattctacta ttccatcaac
      361 aagaaaatct agtgtcgtgt cttttggatc ttcactaata aaaattaatt tagcacctgc
      421 tctttcgcgc caagtttgta atactctttc attatttaat cgtgcttcct tatccataaa
      481 agatgctatg gcatcccagc tgtcaatgat gattattggt gccttaacat ccattagttg
      541 atttgtaatt ctctcaaaca gtgactcagg ctcatcaaga cgtgcatctt caaagcttga
      601 taaattgtaa tcatgtccta actcttcatt tgattcagat acttttggtc gccctacaaa
      661 tttgccaagc caaggataat atagaaaaag ttgctttggg gaaatccttg tagaaatata
      721 gaaaaagttg cttttaatct tcaatgttct cagaatagta agcgaaaggg tagttttacc
      781 tgttcccgca tatcctttaa taagcaagga atatgtatta cgttgaacaa attgcattag
      841 ctcatgcggg atatgaatgg gtttttcagt ctgtttctta tttgagctta catttgtcct
      901 cattcaattt agcatggctc tagtagtaat aataatcctt tctaatttgc attcctgtat
      961 ttaacgtatg tctcgtttta ttaaatttaa tgtcattgat gttaaatgtc ttcactcaca
     1021 gaatatcttc attaaatttt gcatctttat atgaccttca gtgtaaagaa aatcacttta
     1081 tgatatttag tatgcaattt cctttttaaa acgcactcca tctataagtc cttctgcata
     1141 accaatactt aaaacagcga gctcaagctt gccctgattc aaaaatctct ccgcatcatc
     1201 aatatagtat tctgcattat caagtacttc attcaatccc ttgttaatag agagattgct
     1261 ctctgctctg atagcggact tcatttgatc aattagatat ctagctttag gagcatattt
     1321 tttcaccatg gtcacagaaa ttttctgaac ttgtagtgta ttatcaagcg gttcatcgac
     1381 attataagtc aacgttgtaa gtgcatcttg ctccgtaaaa tgaagtgatc cagttactat
     1441 tatagaatga gggcctatcc caaaatcagt gttcattagt gatttaactt taccagacat
     1501 gattttttgc tgttctatac caatccttga agcaacaatc acaaataccc cttctgaaaa
     1561 gattccatat tttagctctt cttcaacttc taataaggac ctgaacacgt atctaggatc
     1621 aagaaaaaat agtttgtcct ggttattatt atattcagtc agtatcaacg tatgatttcc
     1681 cactagcaga ttgtcaaaaa ttgtgttgta tacactaata cttgacttga gttctaacat
     1741 cattgtaaca gtttttccga atttgtataa atgtagtcca gcttcaccga tcaatgatgt
     1801 gataccagac gcggcatgta taatattgac tttaattgat ctttttacag ctcttacata
     1861 tagttctgta agagtagtgg caattaatgg atcgccatat gttaagagtg caatattttt
     1921 gttctttgac tcattaagaa tctctcgtcc atcctccaca aaccatcgct ggacgggtac
     1981 tattatatta ccatcacatt ttgtaattaa attgttcaaa ccttgtaact cctcatctgt
     2041 caatacacca gtaaatctat ctacatatat tatatcacat gttttcaaaa tatctagagt
     2101 atgaatgcta acaccctcgt agccattaat tcctatccca ataagccaga gcataatatg
     2161 aggaacatct cagctctata ttttgtcttt ggtaacgttg acctttttgc cctgatgaag
     2221 tcgcgacata tgaaatagtg ctctgttgaa cacttctata ctagaaacaa attcttcgat
     2281 ctttactctt tcgtcagcac tatgggaagc gtgaggatta cccggtccaa aggttataac
     2341 aggtattttg agtgcgtttc caagtatatt catatcgcca gtgcctgttt tgcgtaaaag
     2401 ggtcgggtgc tttttgcgaa catcaagaat tgagagtgaa agtgctctaa ctagaggaga
     2461 tgagtggttt gcttcgaatg gctcagttct gtcttctatt ctataagtag cttttactct
     2521 cttcctgcta gcaacctcat aaatagctcc gtctaaaaga tcaattacct cttcacatgt
     2581 agttatggtt ggtatacgga tatccatcgt tattttgcat ttctggggcg ttacattatg
     2641 acttgatccg cctgtgattt cagtaaggct gcacgtgatt gaattggcct tgttgtccct
     2701 agccccaatt cgattaatct ctgactttat tgtattccag aaatcgtaca tttcttcgat
     2761 tgaattttta gccagccaag gagcacttgc atgtgcgctg tctccaacgt cgcatgtaag
     2821 cctaattgcc agcctgcctt tgtaggcgat agtgatatta tcaatgccac tcggctctcc
     2881 aaaaattgca tagtctggtg aaagtttgct ttttacgagc tgtttaatcc cagttgcatt
     2941 tccttcctcg t
//
LOCUS       DASQSJ010000224         2621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_106427, whole genome shotgun sequence.
ACCESSION   DASQSJ010000224 DASQSJ010000000
VERSION     DASQSJ010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106427"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(310..1614)
                     /gene="asnS"
                     /locus_tag="VE223_04390"
     CDS             complement(310..1614)
                     /gene="asnS"
                     /locus_tag="VE223_04390"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HZC20862.1"
                     /translation="MSLRCNEIKSSEYIGKNVKVRGWVHRLRKQKENTFIVIRDDRGG
                     IIQSIFPSEKTSHITLESSIEINGLLRKDTRAPEGGYEIKGIDLKTFNIAQVDFPIGE
                     YQSAELLLNNRHLALRTRRMIAIAKIRSSTMKFARQWFIENNWMEVTAPIIVKSAVEG
                     GSTLFKLRYFDEDVYLSQSAQLYLEAMVFSLGPVWSLATSFRAEKSRTIRHLTEFSHL
                     EAEAPWISLEDILRIQEQLISYLIGNIINERFEELNLLRSDINELKGIRTPFDRISYE
                     KAIEILQKNEFRIEDNGKKRIIQWGDDLNIDSERELTKGHSNPIFIIGYPLELKPFYV
                     KEDVQCRGRGLAADMLAPVGFGEITSGGLREDDIMTLTRRIKQEGLDPATYQWYLDLR
                     KYGSVPHGGFGMGIERFIRWITNIDDIKDTVLFPRTISRVSP"
     gene            1863..2216
                     /locus_tag="VE223_04395"
     CDS             1863..2216
                     /locus_tag="VE223_04395"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HZC20863.1"
                     /translation="MLYPVCRSNEIKEHCMSVFTIHHTDVLVGRTNGILFACNNSCPH
                     RGASLSKGEFNKNNIVCYMHGYEFNVVTGNLESMKSWRKDDAWMEQSEEWRKAGNLIL
                     YKVIEMSGIVYVELN"
     gene            complement(2336..2482)
                     /locus_tag="VE223_04400"
     CDS             complement(2336..2482)
                     /locus_tag="VE223_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20864.1"
                     /translation="MAKFDGIKGQELLDVEESDEEITLIFKDNRFLFVKVQNGKLISD
                     SVPE"
BASE COUNT          786 a          515 c          454 g          866 t
ORIGIN      
        1 gtcaagttct atagcaattt gggaaagccg gtatcgcttc tggcttaatt tatttaacat
       61 cgacagacgt atatcgccag caagttcgaa aaatagagag ccagctccct cttccgactg
      121 ttctgacatt taattgacaa tttgtatgtc tcagatttaa acttgctaac ttgattctaa
      181 tgtaggacgt ggcggtaatc ataagatcct ccgatcacgt ttttaaaagc atgtaatatc
      241 aatcatacca actattgcat aacagaacat ttactccata atttagtcac gatcgttgtt
      301 gattttaatc tatggcgaaa cccgagagat ggtccgtggg aagagcacag tatcttttat
      361 atcatcaata ttcgttatcc atcttatgaa acgctctatt cccattccaa atccgccatg
      421 aggaaccgaa ccatattttc tcagatccaa ataccattgg taggtagctg gatccaggcc
      481 ttcttgtttt attcttcttg ttagtgtcat gatatcatct tctctcaatc ctccgctcgt
      541 gatttctcca aatcctacag gagccagcat atctgcggct agtcctcttc cccgacattg
      601 aacatcctct ttaacataga aaggcttcag ttcaaggggg tagccaataa tgaaaattgg
      661 attagagtga cccttcgtaa gttctcgttc tgaatcaatg ttaagatcat ccccccattg
      721 tatgatacgt ttctttccgt tatcttctat cctaaattca ttcttttgca gaatttcaat
      781 agccttttca tatgatattc tgtcaaatgg tgttcgaatt cctttaagtt cattgatatc
      841 cgaccttaac aaatttagtt cttcaaatct ttcattgata atatttccaa taaggtatga
      901 aattagttgt tcttgtatcc tcaaaatatc ttccaaactt atccatggag cttccgcttc
      961 aagatgggaa aattctgtaa gatgccgaat cgttctggat ttttctgctc taaaagacgt
     1021 ggcgagactc catacaggcc ccaaagaaaa taccattgct tcaagatata gttgtgcgct
     1081 ttgtgaaaga tagacatcct catcaaaata tctgagttta aaaagagtcg aaccaccctc
     1141 gacggcactc ttaactatga taggtgcagt cacttccatc caattatttt cgataaacca
     1201 ttgacgtgcg aatttcatgg ttgaagatcg gatcttggct attgcgatca tccgtcgggt
     1261 tcttaaagca agatgcctgt tattcaacaa tagctcagca ctctggtact cacctatcgg
     1321 aaaatcaacc tgagcaatat taaatgtctt aaggtcaatt ccttttattt cataacctcc
     1381 ttctggagcc cttgtatctt tccgtaataa accattgatt tcgatagagg attcgagtgt
     1441 gatatgagaa gtcttttcag aagggaatat actctggata atacctccgc ggtcatcacg
     1501 gatcacaata aaggtatttt ccttttgttt acgtaagcga tgcacccagc ctctgacttt
     1561 aacattcttg ccaatatatt cagatgactt gatctcatta catctaagtg acattatttt
     1621 ttatacaaat gtcaaaagtt aaagatatta ctatactctt caattccatt tatgtcgtgt
     1681 tcactcttgt gttatgatct agcttttgta agtatagaag caaacctcgt cctttgatat
     1741 cattagtgct ttctatgcaa agcaatagat aatctattag catgttagta tgatcagcta
     1801 attgacacgc tctgaagatg aatacagttt ataaaacgtt cgtatttttg tctataaaca
     1861 atatgcttta tccggtttgc aggagcaatg agataaaaga acactgtatg tccgttttca
     1921 caatccatca cacagatgtt ctagtgggaa gaacaaatgg aatattattc gcgtgcaaca
     1981 actcttgtcc tcatagaggt gcttcacttt ctaaaggcga atttaacaaa aataatattg
     2041 tttgttatat gcatgggtac gaattcaacg tagttacggg aaatttagaa tctatgaagt
     2101 catggagaaa ggacgatgca tggatggagc aaagcgaaga atggagaaag gcaggcaact
     2161 taatattgta taaggtcata gagatgagtg gaatcgtcta cgtggaacta aattagttat
     2221 taaaaatata tagaattgaa tttacttttt actctagttt agcattccgc agttatccat
     2281 tatacccaag atttaaaatg attcattgca atgcgaaaaa taatagattt catgtttact
     2341 ctggtacaga gtctgaaatt aattttccgt tctgtacttt gacgaaaagg aacctattgt
     2401 ctttgaaaat caatgtaatc tcttcgtcac tttcttcaac gtcaaggagc tcctgacctt
     2461 ttattccatc aaacttagcc ataactatat catttcacaa aggatctatt tagagtaata
     2521 agttatacct gacaaggatg ggatagtaga acctcaaaat cggccctaat tttttgttat
     2581 gctatcagta ccagtaagct tggcaggtgt gcattccgtc t
//
LOCUS       DASQSJ010000225         2930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_370478, whole genome shotgun sequence.
ACCESSION   DASQSJ010000225 DASQSJ010000000
VERSION     DASQSJ010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370478"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            647..>2930
                     /locus_tag="VE223_04405"
     CDS             647..>2930
                     /locus_tag="VE223_04405"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HZC20865.1"
                     /translation="MVRTIDKTHTMLSYIEGSLKNVTIINGETVEEGFLFSLLNPPIP
                     LGGNIISLDIYIDEIPVSKKSIFVATSEDIVNASILSESRPISFKPFQSARFLVISGF
                     LEEGKKHKIVILSKLEGFEQIIVPFTFSDRVAVQTERIFIPSNLIDDDRSATTLEDTI
                     FKNFTIPLTLSGKKAYIVCSSNGSVSANWTWMGARYDNGGLYVPPARAFGRIIVEISM
                     DDGVRKRLPNFVVSSRHENGILSTRHEVAGLQVKRTLFVPLDNKGFVTMLEFDLSNTY
                     NIHFRDLNVKKKSEKSKRKIRVHFIIDGNITSYGLAAISQSNLSKYLETDNCLQIQTA
                     ARKGIAHYFGAIGIAPMHLKPSKVLTDSFDNDLELSYDLEIESGKTIEVALVAAGSSN
                     SSEDCLNEYRSIRNNYRSLLEYTENHFKMFSSSTLQIGSGAKPEPTISKLIKAFEKAK
                     TSMEYLKAEYDGLGAGVCAGLPRFPNYWARDTGWSLRGYLSLGDYDFVFAIIENFLRH
                     QAKRTSTVAMKGELPMIISGKAFLHNTTFGSADSTFLFPWAIREYVLATGDIQYLKKR
                     WKSIIDLVNWGFLKDTDRDGLVEHAFTGVAEKLPIQDSTWMDHIDRRKSANDIQALFY
                     ESLKIGGDLAKIVGDSCNRERWIRYSEQLQNKIDLEYWDAGNVFYYDTIRRDGSKDSS
                     IRPNALVLLLTGAVRDRDRAEAVLKRIEKNDVTTAWGVRTLSSMDPKYHPSLYHDGAV
                     WPLVTGWCAASEIKFGRKEQA"
BASE COUNT          990 a          466 c          582 g          892 t
ORIGIN      
        1 gttatctact gctttaatat actgtttatt agctaaacta aagatttcgc ggagagtctt
       61 tttcacagga aaatattttt tgagattatc tacttgcagg attttttcat ccaaatgcta
      121 gttttaataa ccgatgattg ataatataaa taatatctaa cccatattcg attaggatat
      181 tataacaaat cacagcttca aaatcaaaaa atctgataaa tagatatact ttttatgctc
      241 gtgttaaatt aaggcatatt ttctcttttt cttgtcaata tttagcatag attgtgattt
      301 ggacatactt ttggatgagt ttctcattca tcagaagtag tagtagcaat tatcaacaaa
      361 gttccaagca tattgaatca aaatttacta caataatctc tgtatatacc tgtgtatata
      421 ataagtttga tccacgatat atggaataca actagatgat gaaaataata aataaagtag
      481 accgtatagt gttaatgtga taaaacggcg tatcaatgta attcgtactt cttttacgtt
      541 ctatatatcg aataagaaaa gagattgctc tattaataaa ctatttttac aatctcaaat
      601 taaaaacata gtgtttcatt aggattgaag tcgaaggtgt aatttgatgg ttaggacaat
      661 tgataaaaca catactatgc tttcatatat tgagggaagc ttaaaaaatg taacaataat
      721 aaatggtgaa acagtagaag aaggattttt attctcttta ctaaatccac caattccttt
      781 agggggaaat attatttctc ttgatatata tatagatgaa attccagttt caaaaaagtc
      841 aatttttgtt gcaacttcag aagatattgt caatgcgtct atattatccg aaagcaggcc
      901 tatttcattc aaaccattcc aaagtgcgag gtttctagta ataagcggat ttttagagga
      961 gggaaagaag cacaagattg tcattttgag taaactcgaa gggtttgagc aaataattgt
     1021 accatttacg ttcagtgatc gcgttgcagt tcaaacggaa agaatattta ttccgtccaa
     1081 tcttattgat gatgatcgct cagctacaac tctagaagat actattttca aaaattttac
     1141 aatcccacta acattatctg gaaaaaaggc atacattgtg tgctcatcaa atgggtcagt
     1201 ttccgctaac tggacttgga tgggagcaag atatgacaat ggtggcttat atgtcccacc
     1261 ggcaagagct tttggcagaa taatagttga aatctcaatg gatgatgggg tgcgtaaaag
     1321 actaccgaac ttcgtagtat cctcaagaca tgaaaatgga attctcagta ctagacacga
     1381 agtcgcgggc ttacaagtaa aaaggacatt gtttgttccc cttgacaata aaggctttgt
     1441 tacgatgtta gaatttgacc tatcaaatac atataatatc cattttagag acttgaatgt
     1501 aaagaagaaa tcagagaaat caaaaagaaa aattcgagtc catttcatta tcgatggtaa
     1561 cattacaagc tatggcctag ccgctatttc acaaagcaac ctttctaagt accttgaaac
     1621 agataattgc ttgcaaattc agaccgccgc aagaaaaggc attgcacact attttggagc
     1681 aattggtatt gcacctatgc atttgaaacc atcaaaggta ctgacagatt cttttgataa
     1741 tgatcttgag ctgtcgtacg atcttgaaat cgaatcaggc aaaactatcg aggttgcact
     1801 tgtagctgct ggcagttcca atagttctga agattgctta aatgagtata gaagtatcag
     1861 gaataattac aggagccttt tggagtatac agaaaatcat ttcaaaatgt tttcgtcttc
     1921 tactctgcag atcggatcag gcgcgaagcc ggagcctact atttcaaagc tgataaaggc
     1981 tttcgaaaaa gcaaagacga gtatggaata tctaaaagct gagtatgatg ggcttggagc
     2041 aggagtttgt gcaggacttc caagatttcc taattattgg gcaagagata ctggttggtc
     2101 attaagggga tatttgtctt taggagatta tgattttgtt ttcgcaatca tagaaaattt
     2161 ccttagacat caggcaaaga gaacttcgac agttgctatg aaaggagaac ttccaatgat
     2221 aattagcgga aaggcttttc ttcacaacac cacctttgga tcggccgatt caacttttct
     2281 ttttccttgg gccatacgag aatatgtgct cgccactggg gatatacaat atttgaagaa
     2341 aagatggaaa tctatcattg acctagtgaa ctgggggttt ctgaaggata cagatagaga
     2401 tgggttagtt gaacatgcat tcacaggcgt tgcagaaaaa ctaccaattc aagattctac
     2461 atggatggac catatagata gaagaaagag tgcaaatgat atccaagcat tattctacga
     2521 aagtctgaaa attggaggcg atctggcgaa aattgttggt gatagttgca atagagaaag
     2581 atggattaga tattccgaac aactacaaaa caagattgat ttggaatact gggacgcagg
     2641 taacgtattc tattatgaca ccattcggag ggacggttca aaagattcca gtataagacc
     2701 caatgctctt gttttgttac taacaggtgc tgtcagagat agagataggg ctgaagctgt
     2761 cctcaagaga attgaaaaaa atgatgttac cactgcatgg ggtgttagga ctttaagttc
     2821 gatggatcct aaatatcatc caagccttta tcatgacgga gctgtatggc ctctcgttac
     2881 aggttggtgt gcggcaagtg agatcaaatt cggcagaaaa gaacaagcat
//
LOCUS       DASQSJ010000226         6504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_411382, whole genome shotgun sequence.
ACCESSION   DASQSJ010000226 DASQSJ010000000
VERSION     DASQSJ010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6504
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411382"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            600..2540
                     /gene="acs"
                     /locus_tag="VE223_04410"
     CDS             600..2540
                     /gene="acs"
                     /locus_tag="VE223_04410"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HZC20866.1"
                     /translation="MSDPNFIKSVYEESEKITLEGKKLNKLRGQASENFEKFWAQQAR
                     NLFWFKEWDNILNWNHPFAKWFVGGRLNASVNCLDRHIKSDVKNKVAIIWEGESGEHR
                     SVTYYELYRSVNKFANALKNLGIKKGDRVTIYLPMIPELPIAMLACSRIGAIHVVVFS
                     GFSVQALSDRINNSKSKIIITSDGGFRRGKLVELKRIVDETIRSIPSIDHIVVLKRAS
                     NDVVMGSKDLWWHNIIENVPPYCEPEAVDSTHPLFILYTSGTTGKPKGVLHSTGGYLT
                     HLYATAKWVFDFKKEDVFFCTADIGWVTGHSYIVYAPLLHGITEIMYEGTPDYPKPDR
                     YWSIVEKHGATILYTTPTALRMYMKHGNAIPNSFDLSSLRLLGTVGEPINPEVWLWYF
                     KTIGKENCPIVDTWWQTETGGIMVSACTGVESISMKPGSGSFPVPGIDAAIVDEDGKP
                     VSPCTKGYLVIKRPWPGMLMTLWEDDEKYQNTYWKKFKDVYYAGDYALYDNDGYLWFL
                     GRSDDVLKVSGHRLGTVELESAFVSHKAIAEAAVTGRVNQNKGESIIVFLVPRAGFTK
                     SDNLRKELVDHIRAKIGPIASPDEIYFVNKLPKTRSGKIMRRLLKSIASGEAIGDVTT
                     LEDGTSIEEVRQAYADLHSSRY"
     gene            complement(2617..3108)
                     /locus_tag="VE223_04415"
     CDS             complement(2617..3108)
                     /locus_tag="VE223_04415"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HZC20867.1"
                     /translation="MVRKITLLVPLIIVAIIVGAIGLTFVPSEIKNRRLEFAQGEVRI
                     NNDLIKVEIAKSDAEKQRWLMFREQRLPLNTAMILIYSKPDLYSLWLLNIEYNLDLIW
                     FDESGHVVYTVKNVSPCKNIFDASSCTYKNTKPAKYVIAATSGFIEGHKITNESKMTI
                     ISI"
     gene            complement(3820..4584)
                     /locus_tag="VE223_04420"
     CDS             complement(3820..4584)
                     /locus_tag="VE223_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HZC20868.1"
                     /translation="MPVRIVVDEREKGSRIPDLLRQAGAIIDFAQLKIGDYIVSPETA
                     IERKTIRDLVSSIYDGRLFVQCSELAQHYSKPIVIIEGNITDLLNLPKEISDGNQLKT
                     LEERIPLAYDALAIVALDFRIPIIHTPCAEYTSQLLVILVNKSLREGRSSSPLLKRIK
                     KGNPMYIQQLSILSSLPGIGDKLAVRMLEKFRTPNRALSASIAELARIPGFGTDRAEK
                     MRKILDYPYNGKSELIQKTLLEDVDQDKSNGKSSHI"
     gene            5685..5912
                     /locus_tag="VE223_04425"
     CDS             5685..5912
                     /locus_tag="VE223_04425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20869.1"
                     /translation="MYEDIALLQVFDPGLIYKPAVTELAKFTLSCFKSGFIISQQAQA
                     TAEQQKNSWSENHYQRVRWYSIHLTRRQKPT"
     gene            6160..>6504
                     /locus_tag="VE223_04430"
     CDS             6160..>6504
                     /locus_tag="VE223_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20870.1"
                     /translation="MVKELKEKILLISERNSPNSPNVFIPFYESLDISFPAGEASDVT
                     AATRLYNYLTLLPLVNIDKRPRLVTRSEGNPVIRRCPFATFDDLQESIYLMEYSNGVR
                     PYILEWYNEVFLV"
BASE COUNT         2129 a         1115 c         1183 g         2077 t
ORIGIN      
        1 aagcattgct tatgggttgt tgtgaaacca acccttagat aaatccttgc tgtttatatt
       61 tcaagacata ggaataatag atagttgcag aggcatttct cagttcatta atcaaaattt
      121 atgatggtaa acatactact gtttatagcg atggtggaag atggtatcca gaagcatgtg
      181 tcttattagg attattaaaa catagactac attcatcata tgaaaagagc atgttgtgga
      241 aagagcaatt gaatatctaa aggaggataa gaactgaggc atttgacggc tatttcccat
      301 gtataagaag aagaaatcga ctgcaatcta cagcatgtcc acaaatgact aattcttttt
      361 tgtgtttatg cataagggta tcatcaaatc caatactaat tttattaatt tagggaggtg
      421 aagggattta agttactaga gccgaaccag caacagatgg aattaaataa tacaaaattc
      481 tttcttttga atattcctgt attataataa ttattgtcag atatgccaac atccaaaaca
      541 tgttatttta gtgtttaaat ccataatact tttaaaatta tccttgctct attatataga
      601 tgtctgatcc aaattttatt aaaagcgttt atgaggaaag tgaaaagata acactggaag
      661 gaaaaaaact caataaacta aggggacaag catcagaaaa ttttgagaag ttttgggcac
      721 agcaggcaag aaatttattc tggttcaaag aatgggataa catacttaac tggaatcatc
      781 cattcgcaaa atggtttgtt ggaggtcgac tcaatgcatc tgtcaattgc cttgatagac
      841 atataaagtc tgatgtaaaa aataaggtag cgataatctg ggaaggcgaa agcggtgagc
      901 atagatcggt tacgtattat gaattatatc gttctgttaa caagtttgca aatgccctga
      961 aaaaccttgg aatcaaaaaa ggtgatcgtg ttacaattta tcttcctatg attcctgagc
     1021 ttccaatagc aatgctagcg tgctcaagaa ttggtgctat acatgttgtt gttttctctg
     1081 gtttcagtgt tcaggcatta tctgatagga ttaataactc aaaatctaaa attattataa
     1141 cttctgatgg tggatttaga agaggaaaac ttgtagaact aaaaagaatt gtagatgaga
     1201 ctattcgctc tataccttca atagatcaca tagttgtttt gaaaagggcc tcaaatgatg
     1261 tcgtgatggg atcaaaagat ttatggtggc acaacataat tgaaaatgta ccgccatatt
     1321 gtgaaccaga ggctgtcgac agcacacatc cactatttat tctttacact tctggtacta
     1381 ccggtaaacc aaaaggtgtg ttgcatagca caggcggcta tctgacacat ctttatgcaa
     1441 ccgctaaatg ggtttttgat tttaaaaagg aagacgtttt cttttgtacc gctgatattg
     1501 gatgggttac tggtcatagt tatattgttt acgccccact gttgcatggg atcactgaga
     1561 taatgtatga aggaacccca gattatccaa aaccggatag atattggtca atagttgaga
     1621 agcatggtgc aacaatattg tataccactc ctacagctct tcgaatgtat atgaaacatg
     1681 gaaatgccat cccaaattca tttgatttat cttcactacg tttattgggg actgtaggtg
     1741 agccaattaa tccggaagta tggctgtggt atttcaaaac tattggaaag gaaaattgtc
     1801 ctatcgtaga tacatggtgg caaactgaaa caggcgggat catggtgagt gcatgtactg
     1861 gagttgaatc aatttctatg aaacccggtt ctggatcctt tccggtacct gggatagatg
     1921 ccgctattgt tgacgaagat ggaaaacctg tatctccatg cacaaaaggg tatctcgtga
     1981 ttaaaagacc atggcctgga atgttgatga cgctttggga agatgatgaa aaatatcaaa
     2041 atacttactg gaaaaaattc aaagatgtgt attatgcagg tgattacgca ttatatgata
     2101 atgatggcta tttgtggttt ctcggcaggt cagacgacgt actcaaagta tcgggacaca
     2161 gacttggtac agtagaacta gaaagtgcat ttgtatcaca taaagctatt gcggaggctg
     2221 cagtaaccgg cagggttaat cagaataagg gggaatcaat aattgtgttt ttggtacccc
     2281 gtgcaggctt caccaaatct gataatctac gtaaggaact tgttgatcac attagagcaa
     2341 agataggacc aatcgcatca cctgatgaaa tttactttgt aaacaaatta cctaaaacta
     2401 gaagtggtaa aataatgcga agattgctaa aatcgatagc tagcggagag gcaattggtg
     2461 atgtaactac acttgaagat ggtacgtcaa tagaagaagt aagacaagcc tatgcagatt
     2521 tgcacagtag tagatactga atagtattca actatttcgt aagatattcc gtttctcctg
     2581 tttgcaaata aggatccatg gatacgaatt atattgttag atcgaaatta tagtcatctt
     2641 tgattcattc gtaattttat gtccttctat aaatcctgat gttgcagcaa tcacatattt
     2701 ggcgggcttt gtattcttat aagtacagct agatgcatca aagatgtttt tacatggaga
     2761 tacatttttt accgtataca ctacatgtcc actctcatca aaccaaatca aatcaaggtt
     2821 atattcaatg tttaaaagcc acaaagaata caagtctggt ttactatata tcaggatcat
     2881 tgcagtattc aatggtaatc tttgttctct gaacataagc catctttgtt tttctgcgtc
     2941 agattttgca atttcaactt taattaaatc gttatttatc cgcacttctc cttgtgcaaa
     3001 ttctaaacgt ctatttttaa tttcagatgg aacaaaggta agaccaatag ctcctacgat
     3061 aattgctaca ataatcaacg gtactagaag agttatcttg cgaaccacgc cgtcaatcac
     3121 aaaatagcct gttgaaaatt tgaactttac tgattaccac tttatcacct attactcctg
     3181 gtattgataa atcgctagct ttagtgtacg ttttactatt ggcattgacg gtaatggaac
     3241 cgcatcattt ggggttcttt atttgatttt atatccaaga atgtattttc caccatcatc
     3301 ttaatcagct aatgcataag aaaaattgac ttacattatc ttttcagata ctcatacata
     3361 taatatctgc attaacatat tcacccttgc aaggataata taagattcca agaatccgat
     3421 tctcacactc tattacgagt ctaatgtcca ataaatccct gtttataatg aaaggcacat
     3481 ataagaaata agaggataga agcagtccaa tatttagaaa gcttatggat atcgaaaaat
     3541 gaaaaggatt aattttggtg tcataagaat tgttaatgat cgatgaccct ttgcacttat
     3601 tatattgtgt tttttttgtc ttcagcatca atccaaaatg gaaacatgaa aggataatcc
     3661 ttactttgtg aacatcaatc tgacaatttc agataatcaa ttttaactgt ttgttaaagt
     3721 atatgctatg aaatagacaa tttcttgtgc caatggccag tcccagttaa atgccatttc
     3781 acttagtcat caattaaaat gaaggggaga accattcaat tatatatgtg aacttttccc
     3841 atttgattta tcctgatcta catcctctaa gagtgtcttt tggattagtt cgctcttgcc
     3901 attatatggg taatccagaa tttttcgcat tttttctgca cgatctgttc caaaaccagg
     3961 aattcttgca agttctgcaa tagatgcact tagtgcacgg ttaggtgtcc gaaacttctc
     4021 aagcattctc actgcaagtt tatcacctat tcctggcaac gaagagagaa ttgacaattg
     4081 ttgtatgtac atagggttac ccttctttat cctctttaac aaaggactgc tacttcgccc
     4141 ttcccgcagt gatttattta ctaaaataac aagcaactgt gatgtatact ctgcacaggg
     4201 agtatgaata attggaattc tgaagtctaa tgctacgatt gcaagcgcat catatgctag
     4261 aggaattctt tcttctaatg tctttaattg attaccatca cttatttctt taggaaggtt
     4321 aagaagatct gtaatatttc cttcaataat tactatgggt ttagaatagt gctgagcaag
     4381 ttctgaacat tgtacaaata atctcccgtc atagatcgag ctaactagat cacgtatagt
     4441 ttttctttct attgcagttt ctggagagac aatataatca ccgattttta gctgtgcaaa
     4501 atcaattatt gcacctgctt gacgtagtaa atctggaatt ctgctacctt tctccctttc
     4561 gtcaactaca attctgacag gcacaagtca atttaatcag gggttgttaa tgtgtctacc
     4621 tttcctcttc tattcttcaa atagcttgct gtttgtatag ttaatcgata ttttcttgta
     4681 taatccaaac taacatgttt ttgttccttg gaccaagact atgttcttaa ggaacccaat
     4741 tccgttatgg aacagcaata tatggcattt cattgcacca tacagataaa tttttagaga
     4801 acaataaatt aagaaccaca tacctgcggt tgtcgacgaa aatagactgt ggcaagtggg
     4861 agcgatgtct tagagatgtt gaaaagaaaa gatactgcgt aaataaaatg cagtctgcaa
     4921 cactatttgt aagaatgcaa gaacatgaaa aaataataga aagaaaggaa gctatatcga
     4981 aaaagaggcg gatctcatta tatagtttat gggcgtacct ggacagattt attcatgaca
     5041 tcagcgactg ttttagattc ctctttgtat tcataagcta aaagtataac aattgacaat
     5101 cacaataaca ccaccactac taccatcttc ctctttttaa atttcgagaa acaataagac
     5161 cagtttgttg catgacatct ttataatatc atcaaaaata catatacgca ctcttttgtc
     5221 ttttaattag tgacataatc gcgtaaacat tcctttacct tcttgtttgg aaggttttct
     5281 gtttgatatc ctgcttttat cttgatgttt tacatagttc cttacctttt ctaaattgaa
     5341 cataatattc ttatagaaat tgttgatacg ctcgtttctt tcttggaatt ctgatatgtt
     5401 tttagtatag gagtaggatc tggaacaagt tttgtttagt attattatta ttattacgaa
     5461 ttactcttat ttttctacca tagtatatag atatatttct tgacattgaa gtttatgcat
     5521 tttataaagg aaagatgtgg tgtactgcag ccgctttaaa aaattggacg tatatctgta
     5581 aaataataaa tattgagctt atcttgttat aatttaatat agaaatcctc tgaaagaaat
     5641 tacctaatta ccgccatacc cgagtacgac caaagctttt ccctttgtat gaagatattg
     5701 cattactgca agttttcgat ccaggactaa tttacaagcc ggcggtgacc gaattagcaa
     5761 agtttaccct gtcatgtttc aaatctggct tcatcataag ccagcaagct caagctacag
     5821 cagaacagca aaaaaatagc tggtcagaga accactatca aagggttaga tggtactcta
     5881 tacacttgac gaggcgtcag aagcctacgt aataggaggg ctatcataca cagacgatca
     5941 gatgaattct aaagacagta aaactactaa gattttgctg caaatcccga aattgctata
     6001 gatgagtatt ttaaagaaca aaatgctacc caatcaaagt taaataagtt caactttcaa
     6061 cctgcaacaa tcaaaaagaa agtttcactt tatggttctc ctgaatttgt atatgaggaa
     6121 actatagtct ctgaaagcca aaagaaccag gcaaaagaaa tggtaaaaga actcaaagaa
     6181 aagatattgc tgatatcaga gcgaaatagc ccaaacagtc caaatgtatt cattccattt
     6241 tatgagtcat tagacatctc gtttccagca ggcgaagcat ccgatgtgac agctgcaaca
     6301 aggctttaca actacctgac tttattacct cttgtaaaca tagataaaag gcccaggctt
     6361 gtcacaagat ctgaaggcaa ccctgtaata aggagatgtc cattcgcaac attcgatgat
     6421 ctgcaagaat ctatctatct aatggagtac agtaatggtg taagaccata tatcctggaa
     6481 tggtataatg aagtgttttt ggtg
//
LOCUS       DASQSJ010000227         2620 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_225586, whole genome shotgun sequence.
ACCESSION   DASQSJ010000227 DASQSJ010000000
VERSION     DASQSJ010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225586"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1197
                     /locus_tag="VE223_04435"
     CDS             <1..1197
                     /locus_tag="VE223_04435"
                     /inference="COORDINATES: protein motif:HMM:NF016765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20871.1"
                     /translation="KKQLEDNWIHFLNANSARLSVESLSGATPPSVFVGRYGYPKVKV
                     GPMVPPLHGDTTILDTPEMWLGKSIEEIVNYRLALVRGVSNIDVHSTAGKYVESLQEL
                     SMTSKSVESEATFGRRPIADIEQEKYFGLDTDSAPFGPVAPLKTFKTSSSLSVDRRLE
                     NAFYDNDLRAAEAIVNLYRRGVEVSKICRVLSMGMLGLQKNRRLVPTRWSISATDDII
                     SASLIKEIETFPTIDFFKVYKYSHLCNHYSVILIPDDTWSFEMQEGWFDNNGNLEIGM
                     DFENAKGQDHYPSIAGAYFAARLGVAEHLFKARHKAAALILREIRPEYVMPLGVWQIR
                     EGVRQALDGEAKQFDNFEKALSFACVNLSISKNEWIRNSKIYKNMREQMRITDFFKGN
                     FDDADK"
     gene            complement(1809..2048)
                     /locus_tag="VE223_04440"
     CDS             complement(1809..2048)
                     /locus_tag="VE223_04440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20872.1"
                     /translation="MYNKHTTTATLYAAVIASVLVASAFAISYVQMASAQGNQTGGAT
                     AGGGGTNQSSSNSSSSSGGATTGGSTTGTSGGNRY"
     gene            2441..>2620
                     /locus_tag="VE223_04445"
     CDS             2441..>2620
                     /locus_tag="VE223_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20873.1"
                     /translation="MQHYAVFDTVGGDTYKTPFKVLKKDSGIVSMPEQPNSDLMNQYG
                     FKAVFQFTQLSRERLT"
BASE COUNT          844 a          447 c          535 g          794 t
ORIGIN      
        1 aagaaacaac tagaagataa ttggattcac tttctcaatg caaattctgc cagactatcg
       61 gtagaatcgc tttctggtgc cacaccgcct tcagtctttg tgggaagata tggttaccct
      121 aaagtaaagg tagggcccat ggtaccgcca ttacatggag atacaacaat actggatacc
      181 cccgaaatgt ggcttggtaa aagcattgaa gaaattgtta attatcgact agctcttgtc
      241 agaggagtat caaatattga tgttcatagc acagctggaa agtacgtaga atctttgcag
      301 gagctatcta tgaccagtaa atcagtcgaa agtgaagcaa ccttcggaag gagacctatc
      361 gcagacatag agcaggaaaa atattttggt ttagatactg attcagcccc ttttggccct
      421 gttgcaccat taaagacttt taaaacatcg tcatcgcttt cagtagatcg aagactggaa
      481 aatgcttttt atgacaacga tttgcgtgca gctgaagcta tagttaacct ttatcgacgt
      541 ggagtagaag tcagtaaaat ctgtcgagtt cttagtatgg ggatgttagg attacaaaaa
      601 aacagaaggt tggtgcctac aagatggagt atatctgcta cggatgacat catttcagct
      661 agtttgataa aagagatcga gacatttcca acaattgatt tctttaaggt ttacaaatat
      721 tctcatttat gtaatcatta ttcggtaatt ttaattccag atgacacatg gagttttgaa
      781 atgcaagaag gatggtttga taataatgga aatttagaaa ttggcatgga ttttgagaat
      841 gctaaaggtc aagatcatta tccttctata gcgggagctt attttgcggc aagattaggt
      901 gtggctgaac atcttttcaa agcaagacac aaagcagcag ccttaattct aagagaaatt
      961 cgtccagaat atgtaatgcc actaggagta tggcagataa gggaaggagt aagacaagca
     1021 cttgatggag aagcaaaaca atttgacaat ttcgagaaag cattatcatt cgcatgcgtt
     1081 aatctatcca tatctaaaaa tgaatggatt agaaatagta aaatctacaa gaatatgaga
     1141 gaacagatga gaattacaga cttttttaaa ggtaattttg acgacgcaga caaatgagat
     1201 gaaacatgga tataaaagtg cagctaggaa tttagcaagc aagttttttg atcgcaggaa
     1261 gagcattaga aataattttc aataacacca ttatcttgct tgactgaaaa atacatccaa
     1321 actaacatta atttctattc tgcttgattt cattactatg ctaaaatggg gtaaagaggc
     1381 gtaatattat catcgaccaa gtacgtttgc tcaaatgcta aaaccctgtg ataatcccag
     1441 agcatcgata ttatcccgat gcgtcctgtg ttgtttgata agtcagcgac atatgccttt
     1501 gctaaattga tatcaaggaa ctctatccat ttccaaaggc attatgtgca gtaatgataa
     1561 aaaaattgtg actgataacg atgagaccca taaagcattt cttgacttgc ttccccaatt
     1621 actttttctt ttttttatgg tgaggaactc ttttatgatt cgaataacgt cattcaatat
     1681 tatttatttt ctctaaactg tccttccatt acaatctgtt attattacgc taatgaaaaa
     1741 ataaaagatg tcgctagttg agagatcttc tctgctaatt tcgcaatatc ggattgccat
     1801 tgatctggct aatagcgatt gccaccgcta gtgccagtag tgctaccacc agttgttgcg
     1861 ccgccgctgc tgctacttga attactgctg ctctggttag taccaccacc gccagcagtg
     1921 gctccaccgg tctgattacc ttgtgctgat gccatttgta catagctaat agcgaacgca
     1981 gaggcaacaa gtaccgatgc aatgactgct gcatatagtg ttgctgttgt tgtatgtttg
     2041 ttatacattg gacatcaacg atgtctatag gatttataat tttgtgattt gttttatgta
     2101 attagtttca gtcatatctg tatagttaat agcagtataa agacaatggt agcaaacaag
     2161 atggcaacgg ggtattgaga ttttccgtct acactaacaa tgaatgacat atagaggagc
     2221 gagataggta gatatgtgct aataaatttg ttgaagagaa aatggctttt gactatgtaa
     2281 tgttaagacc atgatcaatg attgggctga aaagtgttcg tcatcagggc ttagtagtgg
     2341 tctagcgtga ccatttttca atcatagctc acaagtattc ctaatgtctc attcattggg
     2401 ttgatagatc tctgattaac cttaattaat cgaagataag atgcagcact atgcggtttt
     2461 tgatacagta ggtggcgata catacaagac gccctttaaa gtattgaaga aagatagcgg
     2521 catcgtttct atgccagaac aaccaaattc agatctaatg aatcaatatg gattcaaagc
     2581 agtatttcaa ttcactcaac taagtagaga gcgattgact
//
LOCUS       DASQSJ010000228         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_345661, whole genome shotgun sequence.
ACCESSION   DASQSJ010000228 DASQSJ010000000
VERSION     DASQSJ010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345661"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            473..1657
                     /locus_tag="VE223_04450"
     CDS             473..1657
                     /locus_tag="VE223_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HZC20874.1"
                     /translation="MDARNIGLRNIEVADTKICSIDGEQGKLIYRGYDILDLVNHSTF
                     EETTYLLLFGELPSSDELADFSRRLNEVRNLPEPLLKNLKNRPKKAHPMDVLQSCISE
                     LADYDLNINDDTREANIGRAIILISRIPSIVAAWNRIRNGQHVIEPKEEGSHAANFLY
                     MLRGTEPIQEESKVFDICLILHAEHSFNASTFAAREIASTRAHMYACIGGAIGALSGE
                     LHGGANIQVMKMLLEIGDLEKVENWVAGRLEHGGRIMGMGHAVYRTTDPRADILARLS
                     RAMSREKGTKWFELTERVEKATKEFMLKNKRQPIYPNVDLYSASLYFSMGIPMDLNTP
                     IFAISRISGWCAHVIEEKFAEAAPRPALYRPQAVYVGRYCGPMGCEYTPIKKRQENSL
                     KI"
     gene            1916..>2379
                     /locus_tag="VE223_04455"
     CDS             1916..>2379
                     /locus_tag="VE223_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor"
                     /protein_id="HZC20875.1"
                     /translation="MRSAECGDSFVKIAGLIGGEEYLRVARALLNSEDATDEEIASAT
                     GMRINVIRKVLYDMFGKALITGIRVKDEKKGWFVYRWRAKQDQVDNFIDNQKKKILDR
                     LQKRLEYEDSSEFYHCGNKDCPRVKFDSAVEVFFKCPICKGSLNMVGNDKVK"
BASE COUNT          792 a          396 c          496 g          695 t
ORIGIN      
        1 tatctttgag cagagggaaa attgattgct gctactgact acgtatgtag tgatgtttgc
       61 aaatagtctg ataaaagtga tcgatggaag gacagtcata tcgaaaccta acttatacaa
      121 gtttcttatc tatcctccag agggggactt gaacaattag gctgtaacaa ttgaatcgct
      181 tatgctgagt aaaggatata aagtttaaaa tgcccactga attattatat tatattatat
      241 gtaatggctt cagcaagaca ttattctact tctatgacac taaaataaaa caaagtgcac
      301 aaaggcttaa taggaaaatc agatctattt tatatcccct ctatatacag ctggggcagc
      361 tatgaaagaa acatgttctg ttagcataag gatctacctt tgtcctttgg atattttatt
      421 aagcacaaaa tcattacttt aatatagaaa cttccagaag cattattatt agatggacgc
      481 gagaaatatc ggcctaagga atattgaagt tgccgacacg aaaatttgtt ctattgatgg
      541 agaacaaggt aaattaattt accgtggtta tgatattctg gacttagtta atcattctac
      601 atttgaagaa acaacatatc ttttattatt tggagaactc ccaagctctg acgaattggc
      661 tgatttttca cgtagattaa atgaagtccg aaacttgcca gaaccattac ttaagaatct
      721 aaaaaaccgt ccaaagaagg cacatccaat ggatgtactt caatcatgca tttcggagct
      781 tgctgattat gatttgaaca taaatgatga tacaagagaa gcgaatattg gaagagcgat
      841 tattctaatc tcaaggatcc cttccattgt agctgcatgg aatagaatta gaaatggaca
      901 gcatgtgata gaacctaagg aagaaggttc acatgcagca aactttctct atatgcttcg
      961 aggtaccgag cctatacagg aagaatctaa agtgtttgac atttgtctta tcttacatgc
     1021 tgaacatagt ttcaacgcct cgacatttgc tgcaagggag attgcctcaa ctagagctca
     1081 tatgtatgct tgcatcggtg gcgctatagg tgccttatca ggagaattac atggcggagc
     1141 aaatatccaa gtaatgaaaa tgctgcttga aattggcgat ctcgaaaagg tagaaaactg
     1201 ggtcgcaggt cgactagagc atggcggtag gataatgggc atgggccacg cagtatatag
     1261 gaccactgac ccccgagcag atatactagc tagattatcg agagcaatgt cgagggagaa
     1321 aggtaccaaa tggtttgaat taacagaacg cgttgaaaaa gccactaaag agtttatgct
     1381 taaaaacaaa aggcagccaa tttatcccaa cgtcgatctt tatagcgcat ctctttattt
     1441 tagcatgggt attccgatgg atctcaacac tccgatattt gctatctcca gaatatctgg
     1501 gtggtgtgcc catgttattg aagagaagtt tgcagaggct gctcctagac ctgcactcta
     1561 tcgtccacag gctgtatatg taggaagata ttgtggtcca atgggttgtg aatatacacc
     1621 tatcaagaaa agacaagaaa attcactaaa gatctaataa tcgtcgacac aacagaatca
     1681 tagagagttt gggattcaag cactgattct ggaatttgtc gcataatcaa agaattttta
     1741 tatactatat ttgtatttcc tagaaacccc ttttcgaaga aggatttact tagttcgccg
     1801 gccctattct tggtagtggg atcattaaca ttgtaaatat tccttgacct atctctttag
     1861 atgtgtggcg atataacaaa actatatatc taaaaatgcc gatctaatca attagatgcg
     1921 ctcagcagaa tgtggagatt cttttgttaa aattgctggc ttaataggag gcgaagaata
     1981 tcttagggtt gcccgtgctc ttttaaattc tgaagatgca accgatgaag aaattgcaag
     2041 tgcaactggc atgagaatta acgtcataag aaaagttctt tatgatatgt ttggtaaggc
     2101 tctaattact ggtataaggg taaaggacga gaagaaagga tggtttgtgt atagatggcg
     2161 agcaaaacaa gatcaggtcg acaattttat tgataatcaa aagaaaaaga ttcttgatag
     2221 attacaaaag cgattagaat acgaagactc ttcagagttt tatcactgtg gaaataaaga
     2281 ttgtccccgt gtaaaatttg attctgcagt agaagtattc ttcaaatgcc ctatctgtaa
     2341 aggatcgctt aacatggtgg gtaatgataa agtaaagga
//
LOCUS       DASQSJ010000229         6245 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_251672, whole genome shotgun sequence.
ACCESSION   DASQSJ010000229 DASQSJ010000000
VERSION     DASQSJ010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6245
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251672"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /locus_tag="VE223_04460"
     CDS             complement(<1..800)
                     /locus_tag="VE223_04460"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HZC20876.1"
                     /translation="MKYRKLGKSGIKVSEIGFGAWVIGLDWWGKKIDDDNAIRMLKRA
                     YDLGINFYETADMYGKGKSERVIAEAFKDMRNEVVYSTKWGYDMYNVEQIGHNEILQR
                     HDPGFLEYALEQSMTRLQTNYIDVYSLHNPKLDAIKNDSLFMSLDSLIQSGKIKSHGV
                     SLGPAIGWKDEGLLAMERRNISCLQTVYNILEQEPGRTFLDTASKNNVGVMARVPDAS
                     GVLTGKVSEKTVFDKNDHRGNRKKEWIIEAMQKIEKIKPIANANGWNIS"
     gene            complement(804..1364)
                     /locus_tag="VE223_04465"
     CDS             complement(804..1364)
                     /locus_tag="VE223_04465"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HZC20877.1"
                     /translation="MAALKEWAVVCKALEEGRQILLLRKGGIMEYRQGFKVKHNKFLL
                     FPTFEHQSKESIQPNYLSMLYSVIQNTPTNGKNKITSYADVADIKEVSDKSILRKLEK
                     YHIWNDRYVDIRMNYNPKRPMSIILLRVYKMDNPIEVDVKSEWAGCTSWIPIEFPVHG
                     NNDGRQPVLEDRRFNQIVNEIKEVLN"
     gene            complement(1364..2071)
                     /locus_tag="VE223_04470"
     CDS             complement(1364..2071)
                     /locus_tag="VE223_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HZC20878.1"
                     /translation="MTFSEEGKITTTTSSSPLYLNFSFFKVDPKWRWLNEIGKEEAAK
                     EFSSLIEVANTKMKVRTYSTLGLRDDAEFLLWMISDSVEKMQILTSKTYSTVLGKYLD
                     LSQMYLSASRPSIYSSKVIPGFATDEQPMKYTIVYPFVKSREWYLLPYDDRQKMMDEH
                     IAVGRKFPQIRLNTSYSFGIDDQDFMLAFETNDLMIFQDLIIQLRETQVSKYIVRDTP
                     MIVCIYKGVEDIIKSLG"
     gene            complement(2268..3065)
                     /gene="sufC"
                     /locus_tag="VE223_04475"
     CDS             complement(2268..3065)
                     /gene="sufC"
                     /locus_tag="VE223_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HZC20879.1"
                     /translation="MFEESFIMAFLEVKDLHASIEGKEILTGLSLNVNKGEVHALMGP
                     NGSGKSTFANVLLGHPKYTITSGDIFVKEQSILDLSTDERSKKGIFLGFQYPIEISGV
                     GYSHFLRNAYNTLSKSLGQDQQNREVFLTVREFHEYVKRNLDYVGLDPSFLGRYLNEG
                     FSGGEKKRSEVMQMLVLKPNIAILDEPDSGLDIDAVKAVADAINKLLTTDAGVVVITH
                     YARILRYLTKLDHVHVMARGRIIKSGGKELSEELESRGYGWLGIEDK"
     gene            complement(3208..3714)
                     /locus_tag="VE223_04480"
     CDS             complement(3208..3714)
                     /locus_tag="VE223_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20880.1"
                     /translation="MASVGKVALLVILGLGAVTGIIFYYLAAMFTPQPGVVVSLYRKD
                     LPSVSEAQANNKPAASAVIDESKFTNKVAITILKGASTQGNPNYDPDTSKASADALVT
                     WTNADITIHTATSGTGAQDPSSGKLFDSNFLNPNQKYSVPASKIGPGEHPYYCKIHPY
                     MTGKITIS"
     gene            complement(4083..4526)
                     /gene="rpsI"
                     /locus_tag="VE223_04485"
     CDS             complement(4083..4526)
                     /gene="rpsI"
                     /locus_tag="VE223_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HZC20881.1"
                     /translation="MNKIDLYPGQRKRCRAVATISKGNGKVRINNIPVEVLKPEAVKE
                     LILIPLTVVGELRNRVDINVQVEGGGIMGQAFASAVAISRALTGEGKGGRDPRDHPLS
                     KTMREEVREKISDFDRHLLAGDPRQIESKKFGGPGARRRKQKSYR"
     gene            complement(4533..4991)
                     /locus_tag="VE223_04490"
     CDS             complement(4533..4991)
                     /locus_tag="VE223_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HZC20882.1"
                     /translation="MVKQELKSQKQPVVVDATNCIVGRMCSQISKLLLQGNRVTIVNS
                     EKSMLSGNRYKTIALYKEHLEINSVTNPIHGPFHPRRPDTILTKIVRGMLPKRKTSGI
                     EAFKRLRVYIGTPDDLKNTKAESFDYSKITKPASYYITLGDIAKQIGWKG"
     gene            complement(4984..5316)
                     /locus_tag="VE223_04495"
     CDS             complement(4984..5316)
                     /locus_tag="VE223_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HZC20883.1"
                     /translation="MDNAIWTVRRAFKKSKAPIWRSLEDELLAPRSNRREVNVSKLES
                     VTKNDEVIIVPGKLLGAGAIGHRLTVCPFSISEVATKKITGSGGRVITLDDLIESHPD
                     GKGVHIIG"
     gene            complement(5380..6054)
                     /locus_tag="VE223_04500"
     CDS             complement(5380..6054)
                     /locus_tag="VE223_04500"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HZC20884.1"
                     /translation="MFYELTLTSPSIDILQREHEKIIIRFDNVPRQYVNAIRRLSISE
                     IPTLAIDDVVILENSSVMHDEAIAHRLGLIPLRTDLDRFVMPHDCDCKSTLGCSKCRV
                     LLVLDSEATEKTKVVTSGEILSEDEFVKPVSKDIPIIVLAPSQKLKFEAYARLGVGKD
                     HAKWQPTSAAIVKDGKDENESILVIETNGALTAEEVVMAAIEQINSKTKNFNHTVQSL
                     KIPTNV"
BASE COUNT         1833 a         1258 c          953 g         2201 t
ORIGIN      
        1 gatatattcc atccatttgc atttgcaatt ggttttattt tttctatttt ttgcattgct
       61 tcaataatcc attctttctt tctatttcct ctatggtcat tcttgtcgaa tacagttttt
      121 tcactaacct tcccagtcaa tactccagaa gcatctggca ctctggccat gacccctacg
      181 ttatttttgc ttgctgtatc taaaaaagtt ctacctggct cctgttccaa aatattgtaa
      241 actgtttgaa ggcaagatat gtttcgtctt tccatggcta aaagcccttc atccttccag
      301 cctatagccg gaccgagtga aacgccatga cttttgatct ttccactctg aattaagctg
      361 tcaagcgaca tgaacaaact gtcatttttt atagcatcca acttcggatt atgaagactg
      421 taaacgtcta tataattagt ttgtaaacgt gtcatactct gttccaatgc atattctaaa
      481 aatccaggat catgtctttg taatatctcg ttgtgtccaa tctgttcaac attatacata
      541 tcataacccc attttgtaga ataaacaact tcgttacgca tatctttgaa tgcctctgcg
      601 atcactcttt cgcttttacc ctttccatac atatctgcag tttcgtaaaa attgataccc
      661 agatcatagg cccgttttag cattctaatc gcgttgtcat catctatctt ctttccccac
      721 caatccagac caataaccca tgctccaaat cctatttcac ttactttaat accacttttt
      781 cctaatttcc tatatttcat atcttagttt aagacctcct tgatctcatt tactatttga
      841 ttaaatctcc tgtcttctaa aacaggttgg cgaccgtcat tattaccgtg cacagggaat
      901 tcaataggaa tccatgacgt gcatcccgcc cattcagatt taacatcgac ttctatagga
      961 ttatccattt tgtagacgcg taacaatatt atactcatag gtcttttggg attatagttc
     1021 attctgatat ctacatagcg atcgttccat atatggtact tctctagttt tcgtaaaatc
     1081 gatttatcac taacctcctt aatatctgca acatccgcat aagaggttat tttattttta
     1141 ccattggttg gagtattttg tattacacta tatagcatac taagataatt tggttgtatg
     1201 gattcttttg attgatgttc aaaagttgga aatagtaaaa atttattatg ttttacctta
     1261 aaaccttgcc tatactccat aataccacct tttctcagaa gtaatatctg tctcccttct
     1321 tcaagggctt tgcaaactac ggcccattcc ttaagcgcag ccattatcca agacttttaa
     1381 tgatatcttc gacaccctta taaatgcaaa ctatcatcgg ggtatctctg actatgtatt
     1441 tgctaacttg agtttcacgc aactgaatta tcaaatcttg aaagatcatt agatcatttg
     1501 tttcaaatgc aagcatgaaa tcctgatcat cgatgccgaa ggaataagat gtattaagcc
     1561 tgatttgtgg aaattttctg ccgaccgcta tgtgttcatc catcattttc tgccgatcat
     1621 catacggaag caaataccac tctcttgatt ttacgaaagg ataaacaata gtatatttca
     1681 taggctgttc gtccgttgca aatccaggaa taactttact cgagtatatt gatggtcggg
     1741 aagcagataa atacatctgc gaaagatcca aatattttcc tagaaccgta gaatatgttt
     1801 ttgatgttag tatctgcatc ttttcaactg aatcagaaat catccacaac aaaaattctg
     1861 catcatcacg taatcctaaa gtagaataag tccgaacttt catttttgta tttgcaactt
     1921 ctattaaact cgaaaattct tttgcagctt cctctttgcc aatttcattt agccacctcc
     1981 actttggatc aactttaaaa aaggagaaat ttagatacaa tggtgatgat gatgttgttg
     2041 ttgttatctt tccctcttca ctaaaagtca tttaatgaac gaagaatcta aaaccatatt
     2101 taaaactaga tcgagaactt tcataattta aataatgtaa attagaaggt aaaatttatt
     2161 atgatgaaca cttcaaacga tgaaagcaaa agcatactga agcgccataa aaatggtaaa
     2221 atcaattatt aatattaaaa gtgaaaaaat agatataata tgttatttca tttatcctca
     2281 atgccgagcc aaccataacc cctagattca agttcctcag atagctcttt ccctcctgat
     2341 ttgataatcc ttcctcttgc catgacatga acgtgatcta gctttgtaag atatctcaga
     2401 attctagcat agtgagtaat tacaactaca cctgcatctg tagtaagtaa tttattaatt
     2461 gcatctgcta cagcctttac tgcatctata tctaggccag aatctggttc gtcaaggatt
     2521 gcgatgtttg gttttagaac tagcatttgc attacctctg accttttttt ctctccacca
     2581 gaaaatcctt cattaaggta tctgccaaga aatgatggat caagaccgac atagtcgagg
     2641 tttcttttta cgtattcatg gaattctctg acagttaaga aaacttctct attctgctga
     2701 tcttgtccta atgatttact caatgtattg tatgcatttc ttaaaaagtg gctataacca
     2761 acaccagaaa tttcaattgg atattggaat cccagaaata ttcctttttt tgatcgttca
     2821 tctgtagata gatccagaat actttgttct ttaacaaata tatcaccaga tgtaattgta
     2881 tatttcggat gacctagtag cacatttgca aaggtgctct taccggaacc gttggggccc
     2941 ataagtgcat ggacttctcc tttgttaacg tttaaactta gccctgtcag aatttctttt
     3001 ccctcaatac tagcgtgtag atctttgacc tctaaaaacg ccattataaa tgattcttca
     3061 aacactgaat ataaatatta tcaaataata agatcctgcc aaatcaatag taatattaat
     3121 taaattttac tatatattat gttaaataat attagttata ttaatacaat taaataaagt
     3181 gataattaaa agctaatgct atataattta cgatatggtg attttccctg tcatgtatgg
     3241 atgaatttta cagtaatatg gatgctcccc tggcccaatt ttacttgctg gaacactgta
     3301 cttctgattg gggttcaaaa aatttgaatc aaacagtttt ccgctactag gatcttgggc
     3361 gccggtaccg ctggtcgcag tatgtatagt tatatctgca ttagtccatg taactaatgc
     3421 atcggcactt gcctttgatg tatcaggatc ataatttggg ttaccttgtg ttgatgcacc
     3481 tttcaaaata gtgattgcaa ccttgttagt aaatttagat tcatctatta ctgctgaagc
     3541 agcaggtttg ttatttgctt gtgcttcgct tacagacgga agatcttttc gatataacga
     3601 aactactacc cctggctgcg gggtgaacat tgcagctaag tagtaaaata taataccagt
     3661 aactgctcct agaccaagga tcactaaaag cgcaaccttt ccaactgaag ccatgttatg
     3721 ttatatttta acgtgtcaat cccatattaa tttcttttag tatcgcaact tttattttag
     3781 actaatcttc caagataact agtgagcaga atcaagggtt taaagtgtgt cctttgtgaa
     3841 aatggcatca ttaatttcag atataaggca atgcttcaat ggaatatttc tggcgatttg
     3901 tgtggaaaat gctatggaaa aaaattggca gaatactacc tttcttctca gcatcaaact
     3961 ataaaaaaca attaactgtc tttatgtagt cgaaagtttc tctacatgat taaatggaat
     4021 atggacatcc aaactgttct tgtaaaactc gtatttactg tatgaaacta gaaaaataga
     4081 tgctagcgat atgatttctg ttttctgcgc ctggctccag gtccaccaaa tttcttcgat
     4141 tcgatctgtc taggatcacc tgctagaagg tgtctgtcaa agtcagagat tttttctcga
     4201 acttcttcac gcatagtctt tgataatgga tgatcccttg gatctctccc tccttttcct
     4261 tcacctgtta gagccctaga aattgcaact gcgctagcaa atgcctgtcc cataattccc
     4321 ccgccctcta cttggacatt gatatccacc ctgtttctta attctcctac tacggttagt
     4381 ggtatcaata tcaattcctt gactgcttct ggttttaata cttctactgg gatattattt
     4441 attcttacct tgccgttccc tttggaaatt gttgctacag ctcggcatct ttttctttga
     4501 cctggataaa gatctatttt attcatacac ttttaccctt tccatccaat ttgttttgct
     4561 atatcaccga gtgtaatgta gtatgatgca ggctttgtaa tcttggaata atcaaaagat
     4621 tctgccttag tattctttag atcatccgga gtgcctatat atactcttaa tcgtttaaaa
     4681 gcttctatac cgctcgtctt cctttttggt aacattcctc tgactatctt agttagtatt
     4741 gtatctggtc ttctaggatg aaatgggccg tgaatagggt ttgtgactga gttgatttca
     4801 agatgctctt tgtaaagtgc tattgtcttg tatctgtttc cagatagcat agatttctcg
     4861 gaatttacaa tagtaaccct gtttccctgc agtaatagtt ttgaaatttg cgaacacatc
     4921 cggccaacaa tacaatttgt tgcgtcaact actacgggtt gtttttgtga tttcaattcc
     4981 tgtttaacca attatatgca cacccttacc atcaggatgg ctctctatca agtcatcaag
     5041 tgtaataacc cttccacctg agcccgttat tttctttgta gctacttcag aaattgaaaa
     5101 aggacaaact gtcaatctgt gtccaatggc tccggcaccc aacagcttac ctggaacaat
     5161 aattacttcg tcatttttag taacgctttc caatttactt acattaacct ctcttctatt
     5221 tgatctagga gctaaaagct catcttccaa agaacgccat attggagcct tactcttttt
     5281 aaaagctctg cggactgtcc aaattgcatt atccaataaa acattagtaa acaaatcgat
     5341 ctattttgtc tgttattcca aatccccaaa taaacgtacc tacacattcg ttggtatttt
     5401 aagcgattgg acagtatgat taaaattctt tgtttttgaa tttatttgtt caatagctgc
     5461 cattaccact tcttcagctg ttagtgcacc atttgtttca ataacgagaa tggattcatt
     5521 ttcatccttt ccgtctttaa caatggctgc tgaggttggt tgccattttg cgtgatcctt
     5581 tccaacacca agccttgcat aagcttcaaa ttttagcttc tgacttggag caagaacaat
     5641 aattggaatg tctttactga ctggttttac aaattcgtct tcagacaaaa tctctccaga
     5701 agtcacaact ttagtttttt ctgttgcctc agaatctaat acaagtaata ccctacattt
     5761 tgagcatcct aaggtacttt tacaatcgca atcatgtggc attacaaatc tatcaagatc
     5821 tgttcttaaa gggatgagtc ctagtctgtg agcaattgct tcatcatgca tgacagacga
     5881 attctctaat ataacaacat catctatagc taaagttgga atttcactta tagacagccg
     5941 tctaatagca ttaacatatt gcctagggac attgtcaaat cgaataataa ttttttcatg
     6001 ttctctttga aggatatcaa tggaaggaga agtcaacgtt aattcgtaga acatctgcct
     6061 attgcacctt aaaaatctac cgaaaatcat aaaactttca ttctagtcct ctaagaaaca
     6121 tttcatattt atattaacct cttgaaatag attatcataa tatgttttat gttttatatc
     6181 ttagtgagtg tacacaagat gattatgtat agaatataca aatacatatt attttaatat
     6241 ataca
//
LOCUS       DASQSJ010000230         2592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_291397, whole genome shotgun sequence.
ACCESSION   DASQSJ010000230 DASQSJ010000000
VERSION     DASQSJ010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2592
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_291397"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..2198
                     /locus_tag="VE223_04505"
     CDS             306..2198
                     /locus_tag="VE223_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20885.1"
                     /translation="MFKSLSLICLLTLISISLVFPTSKLLLLQQHAAAEELIQKTHII
                     LVHSNTIDNLANNKKNLPTDIKLRNASVLTTTTQNTTNTAVKNFQETFCGANTTAALD
                     FNGYVRENTLPQSCEMPLGIAFDNSAHRVWYVSTKKGVLGSYDLKQNKFDQEHIIPNW
                     TSRENPTDYSQVWTLKVDDSGGRKQQQRGEVRGGDIWFTDVKQNAIWKFIKSSQSFEI
                     YKIPGNSSSFGTTYPISLEIDRKNNRIFFVGTFSPSLWIGDITKMKNGTSDGISQIHI
                     PTSGFNGIDPALVTTGSIAFDSKKNSVWISMLSYGRKGEIFRYDLDKKFFEIFDLPKE
                     LNSPLGLAVDSNSENLWITNAGTSMFYKLNPYTGNIIKFVTSKTSPRVFGHGIITDGG
                     DGSSSGGNGQVRDNGIESNISKNAYTLPYWIQKAPDGSLWFNEQEGNKMARFDPSNMK
                     LTEYWIPTQNRLWGNCPSRGNDNGTSQTCGIANVLQFSISNNNKQVWFTEWSENKIGK
                     LDTKSHLPFSVVVSPQKELTVKRGEIRDIKVKVTESQSASYFAKSNIIHMIASGTFTP
                     TGDFGNSTGYFSQESFLIDSGVKSKQVTFTFRPSMDLTPGKYVLMIGAEDEAISNLRA
                     IKLNVI"
BASE COUNT          915 a          426 c          479 g          772 t
ORIGIN      
        1 tctataataa taataataat atgacaaaaa tagcattaaa caacaagtcc ttatctgcat
       61 atcattacta tgctattttt gctacagcag ctatgggaac aagcgatatg agaagtaaga
      121 tgtgaattag gagtgcataa atagtgatag ctgcaaatat gatcaaagga acagttaaga
      181 tgatcataag gataagtgac tttcaaacat accgtatgga ccagaggtaa agaattagtg
      241 ttagagcagc aacaacaact acatatgcaa caaaagtcta atgagtaaat ataggtgtag
      301 ttgctatgtt taagtcctta tcattaattt gcttactaac tttaatctca atttcgttag
      361 tttttcctac atctaaatta ctattattac aacaacatgc tgctgcagaa gaattaatcc
      421 aaaaaacgca tattatatta gtgcattcaa ataccattga caacttagca aataataaaa
      481 agaatttacc tacagacata aaactacgaa acgcttctgt attaacaaca acaacacaaa
      541 acactactaa tactgcggtt aaaaactttc aagagacatt ttgcggtgct aacaccactg
      601 ctgcacttga ttttaatggg tacgtaaggg aaaacactct ccctcaaagc tgcgaaatgc
      661 ctttgggaat tgcttttgat aacagtgcac accgagtttg gtatgtatcc acaaaaaagg
      721 gagttttggg aagttacgac ttaaaacaga acaaatttga tcaagagcac attataccta
      781 attggacttc acgtgaaaac ccaactgatt attcacaggt atggacttta aaggttgatg
      841 atagcggtgg tagaaaacaa caacaacgag gagaagtcag aggaggagat atttggttta
      901 cagatgtaaa acaaaatgca atatggaagt ttattaaatc ttcacaaagt ttcgagatat
      961 acaagattcc aggtaattct agctcttttg gaacaacata tccaatatct ttagagattg
     1021 accgaaagaa taatcgcatt ttctttgtag gaacattttc gccttcactg tggattggag
     1081 acataacaaa aatgaaaaac ggcacttctg acgggatttc acagattcat attcctacta
     1141 gtggctttaa tgggattgac ccagctttag ttacaactgg ctcaattgca tttgatagta
     1201 agaaaaattc agtgtggata tctatgctat cttatggaag gaaaggagaa atattcagat
     1261 atgacttaga taaaaaattc tttgaaatat ttgatttgcc aaaagaatta aactctcctt
     1321 taggactggc cgtggattct aattcagaga atttatggat aacaaatgca ggcacaagca
     1381 tgttttacaa gctaaatcca tacaccggta atattataaa gttcgttact tcaaaaacat
     1441 ctcccagagt tttcggtcac ggtataatta ctgacggtgg tgatggtagt agtagtggcg
     1501 gcaacggaca agttcgtgat aatgggattg agagcaacat ctccaaaaat gcatatacac
     1561 ttccatattg gatacagaaa gctcctgatg gttctctctg gttcaatgaa caggaaggca
     1621 acaaaatggc tagatttgat ccttctaata tgaaattaac tgaatactgg attccaacac
     1681 agaatagatt atggggcaat tgtccatcta gaggtaacga caacggaaca agtcaaacat
     1741 gtggtattgc caatgtgttg cagttttcta taagcaataa taataagcag gtctggttta
     1801 cagaatggtc tgagaacaag attggaaagt tagatacaaa gagccacctt ccattttcag
     1861 tggttgtatc tccacaaaag gaattaacgg taaagagagg agaaattagg gacatcaaag
     1921 tcaaagttac ggagtcgcaa tctgcatcct acttcgctaa atcaaatatt atacatatga
     1981 tagcatctgg aacttttact ccaacagggg attttggaaa ctctacagga tattttagtc
     2041 aggaatcatt tttaattgat tcaggtgtaa aatcaaagca agtaacattt acctttagac
     2101 catcaatgga tttgactccc ggaaaatatg tgctgatgat aggagctgaa gacgaagcca
     2161 tttccaactt aagagctata aagctaaatg tgatttaatt tattatccat tgcttatttt
     2221 attaattatt aagcagcggt atgacattgc aggacatttg actgacataa attgactgat
     2281 ctcctcgtac tttagatgcc ttctttatag ggtgtatttc tctattattc agattcagac
     2341 aatggcaatt ctgctaagaa ttacctcctt actatatata ttgaatctat agatcagata
     2401 caggagataa ccaatatgac aattgcctct ctgaggatat ttcaattcat ttgaggagaa
     2461 agacattttt atcacgcagg ttttttcgct attgatagta tagaattgca gtttaacaag
     2521 attgttgaga cctgtatata ttcttcagac cttgagaaaa tgaagcgctt ttacatcaat
     2581 attctaggat tg
//
LOCUS       DASQSJ010000231         3262 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_251750, whole genome shotgun sequence.
ACCESSION   DASQSJ010000231 DASQSJ010000000
VERSION     DASQSJ010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_251750"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1348..1815)
                     /locus_tag="VE223_04510"
     CDS             complement(1348..1815)
                     /locus_tag="VE223_04510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HZC20886.1"
                     /translation="MKEQRHKNPIPTIDIIIQKDSRILLVTRKKEPFKGLFALPGGFV
                     NEGEQVEDAAKREAKEETSLDIELVDILGVYSEPNRDPRGHMMSTVFVGKISPNNKVE
                     ALAQDDAAKIEWINLGEVDNTHFAFDHQKIISDYKKWKQSGGTFWSSRSLLLL"
     gene            complement(2002..2526)
                     /locus_tag="VE223_04515"
     CDS             complement(2002..2526)
                     /locus_tag="VE223_04515"
                     /inference="COORDINATES: protein motif:HMM:NF025939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HZC20887.1"
                     /translation="MVSEDNHEEKIDMIEDKLASLSLKIPELLKTPPHVETPATWVRV
                     RGDKAYISGHGPQNPDGSLAGPFGKVGSEVSLEQAYESAKLAGLSILGSLKRELGSLS
                     RVTAWLQVRVMVNTVAGFTRTADVANGFSDLIFALYGRETGMHARSAIGVQALPVCLP
                     VVIDALVEIAPAGV"
BASE COUNT         1014 a          595 c          562 g         1091 t
ORIGIN      
        1 tattttcttc ttgttcaggt gcagttacca taaagaatct tcgaacatct tcaatacctt
       61 ttacctcttc agcagctttc ttaggcctgt agaagaagta tatatcgcct tgttctagaa
      121 tctccgatct ggtattgttg ctactattat ctttgacatt gtttccttgt tgactcatat
      181 ctgaacttga ctcttaattt atcaatagtg acaagttgaa gtccttataa aagtagtgca
      241 gcttatcaaa atcagatgat aacgccatta tattatagca gcgagggcat tctatttcgt
      301 gctccatatt atcatatatc atttccttat tactatcctt tttcttcatt ttggaaagaa
      361 ttagtatgct cttgatgctg caacagtaat tctttgctct cattgtgttc ctatattatt
      421 ctgtaaaaca ctgaatggag atggagggag cggctatcta tagtatatta tgatcatatt
      481 attggtactg tatactatga tccttaactt ctcttgttct gtgtaagtag gccaaatcaa
      541 atgcaatgga ctatcatttt taatattgca ttaacagttg ttacatccat tcagaataat
      601 aatttcccaa gttctactgt tgtttcctct tctgaaaaag taagtgctgc agtaggacaa
      661 actttctaaa agaaaataaa aatgaaaaca tgggaacaac tcaaatacgt tacttttgct
      721 aactttgcaa agaatgtctg ttgtatgaag gattggctgt caacaaagaa ggagaggcaa
      781 gaacatgagt taaattccaa atcccattca tgaagaaacc tcttttttaa tgatgcctga
      841 gataaacttg acagcataga gaaagaagca aagaatgaaa agaagcaagt tataatacaa
      901 ctggcaaaaa aactttgagt gaaggatttc tacagacgct atatctattg gcatagtcaa
      961 tcaatgtatg gaagagtata tctgttcgta cacaaatgcc ttgatgagaa atgcaaacaa
     1021 agtcaccggg tcgagaatgc aagaaaacaa atgaagcgac aacatcaaca agaatgcaat
     1081 gaaaatcatc tagcggcacc aatgccgcta aatcaagagg ctaaaagcaa tgagataatg
     1141 gtttacgttg agggatgtct ttattgctac tcatggcata tggtctacat ttttggagcc
     1201 tggaattcca gtcgctggaa gttagaagag catctttgaa ttctgaaatt attgataaat
     1261 cagacatacg ataatcattc tagactgcga tggtatttag tgtctcgcta ttagttgaac
     1321 acaaaacata tactaaacgt gttcaaatca aagtagcagt aatgatcttg aagaccaaaa
     1381 cgttccgccc gactgtttcc actttttgta atcggatata attttttgat gatcgaatgc
     1441 aaagtgggta ttatcaacct ctcccaaatt tatccattct attttagccg catcatcttg
     1501 tgctaatgct tcgactttat tattagggga aatctttcca acaaagacgg tcgacatcat
     1561 gtgtcctctt ggatctctat taggttctga ataaacaccc aagatatcaa ctaattctat
     1621 atccaaagat gtttcctcct tagcttctcg tttcgctgca tcttctactt gttctccctc
     1681 atttacaaat ccaccaggaa gagcgaaaag gcctttgaat ggctcttttt ttcttgtaac
     1741 tagaagaatt cgagaatcct tttgaataat aatatctata gtcggtattg gatttttatg
     1801 acgctgttct ttcatatgta taagagagta agtagacaac taaaaagtca atcgatccta
     1861 ttaaagtatc taggaaaacc tttagtattg tgtgtttgtc ttatagatta actgattagt
     1921 cttagtagac ccttgtacgg attcaaatac atgacccttt tccatctctt catagtatca
     1981 gtaccaaatt ttattattag atcagactcc ggcaggcgct atttctacca aagcatctat
     2041 tacaacagga agacatactg gtaatgcttg tactcctata gctgagcgtg catgcatacc
     2101 tgtttcacgg ccatataatg caaaaattag atcagaaaat ccatttgcta catcagctgt
     2161 ccgagtaaat cctgctactg tatttaccat gactctgacc tgtagccatg ctgttactct
     2221 acttaaacta cccagttctc gtttgagact acccaatatt gatagacctg ctaattttgc
     2281 agattcgtat gcttgctcca gagatacttc gcttcctact ttcccaaatg gtcctgctaa
     2341 agagccatct ggattctgag gtccatgtcc agagatgtat gctttatctc cccttacacg
     2401 cacccatgta gcaggagttt caacatgagg aggagtcttt aatagttctg gaatctttag
     2461 actgagagaa gcaagtttgt cttctatcat atctattttt tcttcatgat tgtcttctga
     2521 taccatcttg tgatccttgc agtctgggta taatgctata tacaaaattt acgctaggaa
     2581 agtaaacgaa gtcgataggt ggagattgaa tggaatggta tcagtattac agaggtctgt
     2641 atcttgcaca tgatacgtta cagtgtgtca acgataaggt tgtcctcaag atgatacata
     2701 gtcaagctag gcccttagat ttacatttgt aggctttttt atgtgattgt tttttatttg
     2761 atagcaaatg agggaaaatg cagaaaataa aaacatcgag aaagctatga gtttccggaa
     2821 atttttttgt agaaaatatg taacatatgt aataggatat taaatatgtc gattgacaac
     2881 agtgctttac cttttatcaa aatggtagta caccaggcaa aagcttctca gcttactatg
     2941 cacaagatag aaattaattt gaaatatgtt gtgctttaat taatggactg tatgaaccaa
     3001 atattaacct ttattatatt aaatcagtat atcttttttc ctacagaaaa cgacgatgcc
     3061 tctcttcaat tcaaacactc ttgtcaggtt cattttatta ttctgaatct tatgcttcct
     3121 cacaacattt cacagcttga tccagattag gcacattatc atcttttttg gcaaatagac
     3181 tgatgttcta attagcatta cttatattat tttagtagta taatatgact agcacataca
     3241 attgagttct gctctatata cg
//
LOCUS       DASQSJ010000232         6369 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_185747, whole genome shotgun sequence.
ACCESSION   DASQSJ010000232 DASQSJ010000000
VERSION     DASQSJ010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6369
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185747"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            461..808
                     /locus_tag="VE223_04520"
                     /pseudo
     CDS             461..808
                     /locus_tag="VE223_04520"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
     gene            1116..1757
                     /locus_tag="VE223_04525"
     CDS             1116..1757
                     /locus_tag="VE223_04525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20888.1"
                     /translation="MFCNWFESSASHASHNEYGPNQGQSSISKIYANACNVSEVCDDN
                     EGETITHSQNNIINNGSTHTRPALPLLRLLPPLQPVLLSPLVPNIQTSSSTLNKDKTV
                     VRKGEERNLGSSNTSSKKENREEVEKEEREEAKRRILEENPHISKDALEFMLSLPVER
                     KIPKSRNLKLYMQQQSSNKKWTDYRRKIIIRNKALSPCISIIANLVITGIYYP"
     gene            1796..3133
                     /locus_tag="VE223_04530"
     CDS             1796..3133
                     /locus_tag="VE223_04530"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZC20889.1"
                     /translation="MYRTKSMTLSLLLLLIGMLGLSCLSGSIFNEQQDQALAQQYIPT
                     IKYRNLVIDLGNGVKTNAQLTYPAVGNAKYPAVLLIAGSGAEDMNETAGFIRIDKKTG
                     EKIYPPTPFFQVAQYLSERGFAVLRYDKRGIGTNHTILDSNIWGNLTVNDLVQDANKA
                     LAVLINQPEVDANKITVLGHSEGTAISPIVAIDNPIKVKNIVLMAALAQNMSEILYFQ
                     TVTLPISYAQKVLDKNHNGLLSVQEASKDVTFQRLIGGNISLVLTQNLPNGTKVLNPK
                     DNPNNDTFVNINTELKPALIEQAKSFFSPSKKTVATASEPNKCMNLEGCPKYSKSFLA
                     LDPNLSTISKVPPNASILILNGENDTQTPVQGALLLQQKLTEINHPDHILITYPNLGH
                     EFYLSSQWQTQHGPIPSYVLADLYAWLEAHSGFTHIVVPISWSNVSSSSPTTR"
     gene            complement(3510..3683)
                     /locus_tag="VE223_04535"
     CDS             complement(3510..3683)
                     /locus_tag="VE223_04535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20890.1"
                     /translation="MAVRHSVAPDGRLDGVAAWSVTSRIVMPAEDPVVSQSKENTVVP
                     IKKIYNRLNIGLF"
     gene            3706..3876
                     /locus_tag="VE223_04540"
     CDS             3706..3876
                     /locus_tag="VE223_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20891.1"
                     /translation="MLGVPNVSAATVTVSLATPPTSNNCPAGAVAAAIASVGPGGIPT
                     PISPTATTVCIE"
     gene            complement(4184..4921)
                     /locus_tag="VE223_04545"
     CDS             complement(4184..4921)
                     /locus_tag="VE223_04545"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZC20892.1"
                     /translation="MMISIEGLSKRLGNFQFGPLNLQVGEGEVLVVLGENGSGKTTLL
                     NLIAGILKPDKGRIFLNQNLLNDIPIEKRRVAYVFQKPYLFPHLNVFANITFGLRRWR
                     RQQQKGDRVVDISTTRTGEIISMLGIESSLLSRDIQSLSAGEQQKVALARALVIEPHL
                     LLMDEPLTNLDILSKINLMQELRKILTKVKIPVIYVTHYPNEAFGLADKILILNNGSI
                     IEEGTKDEVMLRPKTQFTKMLIRTIWF"
     gene            complement(4905..5771)
                     /locus_tag="VE223_04550"
     CDS             complement(4905..5771)
                     /locus_tag="VE223_04550"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC20893.1"
                     /translation="MINFEGGVLSLFAILLWILAIIFLAYIMLPVLGIVLRLGLLHQD
                     DLTTAAVLNPQTMSAMLLSLQTATISTAICTFMGIPLAYLIARSKSRFTIFIRIAMTM
                     PLAIPPLISGALLLNIYGEASPLGMLSENAGFRLTQSPVGIILAQVFVISPFVVLTAS
                     AGIERVDKHYEYASRILGRNAALTFFSVTIPLASKEIAAGIILAWIRAIGEFGANVMM
                     AYNPKTISIQLWEYNALGGLKLVIPGVLIVMIISFASLAFWFWVIDLGRKRESRRISR
                     VALGIHYNDDQH"
     gene            complement(5824..5964)
                     /locus_tag="VE223_04555"
     CDS             complement(5824..5964)
                     /locus_tag="VE223_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20894.1"
                     /translation="MVTNSIHITIPNTIRNNREAIQFVKFMLSKEARTILEKLDNYAF
                     DT"
BASE COUNT         2161 a         1210 c         1122 g         1876 t
ORIGIN      
        1 cagaatattc cgaagtcgag ctgaagcagg tcgcgcatgg atcgcgctgg agccgctgaa
       61 gcagtcgcgg aagggtggtt tggagtcact ggacgactct ggtaattcag agtcgatgac
      121 tctggcaatc ccaaggaatg gatgacgctg tactgcaata tcttgagatt aagtcgctgg
      181 aatgaaagat tcactacaat acgtaacaaa cgatattgat acacaaacat caatcaggaa
      241 atagaggcca aaattgccta cttttatctc aagactgtat tcgatatttt ggatacatat
      301 acaaaaacaa agtatcctat cagagttaca tatcttcaga atattgtttg tatatcagta
      361 gagtcatcta gtcgatatat tattagtagg atatgctgtg aattttatag gactcccaac
      421 cttttcatgg taaaaattgg tttaaacgaa caccagagag aacttcagat tcacagccaa
      481 gtttccaaaa gtcactcatg ataaacgtct aaatgatgtt agcagagaac tatataattt
      541 cattcaatct atgctaccac ttaaagaaaa gactctatca ttactaatac aattacctcc
      601 atcactaaag ataacagaag gaatagagaa tctcagacaa tatgtagtac ctgaactgga
      661 tgataggttc agatatgcag tagaagttag agatagaaca tggtttcaag atttagcata
      721 caacttcttt gctgacaaca acatatgcat ggtatggagc caacttgcag aactaaggac
      781 acccccaata gctactactg ttggataatg tccttcatgt tgatactatt tataataaca
      841 ttatgcatta cttttatcaa aaaaagctca agtagcaata tgcacatttc tgatatacac
      901 atactggtga tgaatagaga tgttaacgat agttaaacaa acacagggtc caattgaatt
      961 aatcacagca gcaaaaatgg catctgatag aaatgaaaag gtgtgaagtt accttggcaa
     1021 caatagattg gacttgaagc acaattggaa attgcagacc gtcagagaga tgcttgtaaa
     1081 taacttgtca ataaaacagg tgaaagaaaa accaattgtt ttgcaattgg tttgaaagta
     1141 gcgcatcgca tgcatcccat aatgaatatg gacctaatca aggtcaatca agtatatcta
     1201 aaatatatgc taatgcatgc aatgtaagcg aggtatgcga tgacaatgaa ggagaaacga
     1261 taacacattc acaaaataat attattaaca atggcagcac tcatactaga ccggccttac
     1321 cacttttgag attattgcct ccattgcagc cagtattatt atctcccttg gtcccaaata
     1381 ttcaaacaag ttcgtcaact ttgaataagg ataagactgt agtgagaaaa ggtgaagagc
     1441 gcaatttagg cagtagtaac accagcagca aaaaagagaa tagagaagaa gttgagaagg
     1501 aggaacgcga agaagctaaa agaagaatac tcgaagaaaa cccacatatc tccaaagatg
     1561 ctcttgaatt tatgctatca ttaccagtag aacgaaaaat accaaagtca cggaacttga
     1621 aactgtatat gcaacagcag agcagcaaca agaaatggac agactataga aggaaaataa
     1681 taataaggaa taaggcatta tcgccttgta tatcaataat cgctaatcta gtaataacag
     1741 gtatatacta tccatgaaaa ctcaaataca agtatcacat tagcggtatc gagagttgta
     1801 tagaactaaa agtatgacgt tgtcactttt attattattg ataggtatgc ttggattatc
     1861 ttgtttatct ggtagtattt tcaacgaaca acaagaccaa gcactagctc aacaatacat
     1921 ccctacaata aaatacagaa atttagttat agatttaggc aatggagtaa agactaatgc
     1981 tcaactaact tatcctgctg tcggaaatgc aaaatatcca gctgttctgc tcatagccgg
     2041 atctggtgca gaagatatga atgaaactgc aggctttatt cgcattgata agaagacagg
     2101 agaaaagata tatccaccaa ctccattttt ccaagtagct caatatctat ctgagagagg
     2161 attcgcagta ttacggtatg acaaaagagg aataggtaca aatcatacga ttctagatag
     2221 caacatatgg ggaaatttga cagttaatga tctagtacag gatgcaaaca aagctttagc
     2281 agtattgatt aaccaacctg aagttgatgc taataaaata acagtactag gccatagcga
     2341 aggtacagca atatcgccta tagttgcaat tgataaccca attaaagtta agaatattgt
     2401 acttatggcc gcattagcac agaacatgag tgagatacta tactttcaaa cagtaacctt
     2461 gcctatttca tatgctcaaa aagtattgga taaaaatcat aatggattgc tctcagtgca
     2521 ggaagcatct aaggatgtaa catttcagcg tctgattggt ggtaacataa gcttagttct
     2581 tacacagaat ctgccaaatg gcactaaagt gctaaatcca aaagacaatc caaataatga
     2641 tacttttgta aacatcaata cggagctcaa accagcttta atagaacagg caaaatcatt
     2701 tttctcacca tcaaaaaaaa cagtagcaac agcatcagaa ccgaacaagt gtatgaacct
     2761 tgagggttgt cctaagtatt caaaatcatt tcttgctctt gaccctaact taagtactat
     2821 tagcaaggtc ccacctaatg ccagcattct tatactcaat ggagaaaacg atactcagac
     2881 tcctgttcaa ggagctttat tattgcagca aaagctgaca gagataaatc atcctgatca
     2941 tatattaata acatatccca atctaggaca tgagttttat ctatcatctc aatggcaaac
     3001 acagcatggt ccaataccat catatgtatt agctgatctg tatgcgtggc ttgaagctca
     3061 ttctggattt acacatattg ttgtccctat ctcctggtcc aacgtctctt cttccagccc
     3121 aaccactaga tgaatgcttt gagtacttgc agtaagagaa catagataga gagatataca
     3181 cacgtcttct acatatgcca gcagaacaaa cctacacacc tttaaccaca taaccagagg
     3241 ttcatctatt cattttgaat ttcatgttgt tgttggttat gattcttaag tccatgaaca
     3301 tacccttcta actcttggac accaactcct tgtttaggtg tagaggatga gcctccagat
     3361 agggaaatag ctgaaagtgg gtttccggat caagctggtg tgtttttcaa ttgcctagcc
     3421 aatgaagacg aaccatcaaa ctcagaatcc ctagaacacc ctgaaatagg agactcttga
     3481 caacctaacc cttccctttt tatttaattc taaaatagtc caatgtttaa cctattgtat
     3541 atttttttga tgggaacaac agtattctcc tttgattgag atactactgg atcttctgca
     3601 ggcatcacta tccttgatgt aacgctccaa gcagcaacac cgtcaagcct tccatctgga
     3661 gcaacactat gtcttaccgc cacaactagc actcaaaaca taactgtgtt aggagttcct
     3721 aatgtatccg cagctacagt aacagtatcg ctggcaactc ctccaacctc taataattgt
     3781 cctgctggcg ctgtagcggc ggctatagca tctgtggggc caggtggaat tccaacacca
     3841 atatcaccaa ctgcaacaac agtatgtata gaatgaaaaa agcaacaaac tttccctttt
     3901 ttattttgaa gccaccaagt gtatattatt aataacaaaa cggttgcagg gaattattca
     3961 acggcatatt taacaagtag ctaagaccat aataacaaat aaaggaatca taaaatagag
     4021 attggcacca gaagtgaatc ccgcgcactt ctaataaatc ttattacatt gtttatcttt
     4081 ctacagaatg tctgtaaaat tgctaatcaa tagcaaacct atatttggtc aaagcaactg
     4141 ggtcagacaa tcagtaccct aaagaactta tatttataat agtctagaac catatagttc
     4201 taatcagcat tttagtaaat tgggtcttgg gtctaagcat aacttcgtct tttgttcctt
     4261 cctcgattat gcttccgtta tttagaatca atattttatc ggctaaacca aacgcttcat
     4321 ttggataatg agtgacataa attactggga tctttacctt agtaagaatt ttcctaagtt
     4381 cttgcattag attgatttta gataaaatat ctagattcgt aaggggctca tccattagaa
     4441 gaagatgagg ttctattaca agtgctctag ctaatgcaac tttctgctgc tcgcctgcac
     4501 ttaggctttg aatatccctt gatagtagtg atgactctat accaagcatt gaaatgattt
     4561 ccccagtcct tgtagttgat atatcaacta ctctgtctcc tttttgttgt tgtcttcgcc
     4621 atcgccgcaa tccaaatgtt atattggcaa atacattcaa gtgtggaaag agatatggtt
     4681 tttggaatac ataggcgact cttctcttct cgataggtat atcatttaag aggttttgat
     4741 taagaaaaat cctccctttg tcaggtttca atatgccggc tattagatta agcagagttg
     4801 tctttccaga accattctct cctaaaacta caagaacttc tccttcgcca acttgtagat
     4861 tcaatggtcc gaactggaaa ttgcccaatc tcttagacag tccttcaatg ctgatcatca
     4921 ttataatgaa tacccaaagc tactctgctt attcttctac tttccctttt tcttccaaga
     4981 tctatgaccc aaaaccagaa tgccagcgaa gcaaatgaga ttatcataac aattagaact
     5041 cccggtatta caagtttaag tccacctaag gcattgtatt cccaaagctg gattgaaatg
     5101 gtctttggat tataagccat cattacattg gctccaaatt cacctatggc cctaatccat
     5161 gcaagaataa tacctgctgc tatctccttt gaagctaaag gtatagttac actaaagaat
     5221 gtcagagcag cattcctgcc aaggattcta gaagcgtatt cataatgttt gtctactctt
     5281 tctataccag cagatgcagt taaaactaca aatggtgata ttacaaagac ctgagctaag
     5341 attatcccta caggtgattg agtcaatcta aaacctgcat tttcagacag cattcccaat
     5401 ggtgaagctt ctccataaat attaaggagc agagctcctg agataagtgg gggtatagcc
     5461 aatggcatcg tcatagctat tcgaatgaat atggtaaatc gtgatttact ccttgcaata
     5521 agataggcaa gaggtattcc cataaatgta cagatagccg ttgaaattgt agctgtctgc
     5581 aaactcagta gcatagctga catcgtctga ggatttagta cggcagcagt tgttagatca
     5641 tcctgatgaa gtagaccaag ccttaagact atacccaaaa caggaagcat aatgtatgcg
     5701 aggaaaatta tggctaaaat ccatagcaaa atagcaaata acgacaacac accaccttca
     5761 aagtttatca atttataatt atattagaag atatctcttt tgaaatagac gtataatatt
     5821 tctctacgta tcaaaggcat aattgtctag tttttccaaa attgtccttg cttctttgga
     5881 aagcataaat ttgacaaatt gaattgcctc tctattattt cgaatggtat ttggaatggt
     5941 gatatgaata ctattggtta ccaaaggtta aacttcagtc ttgttgtggt gcgactatat
     6001 cttatttata ataatttgca tgggctggat ggtcgcgtta agttaaggta tcttttctca
     6061 ttttcttatc aagaatttga gaatatttgg tctagattgt gatttggaca aacaacttac
     6121 ataaaatatg atgaacaaca atgtcatcca ttgataagcg tgaactacta ctattattat
     6181 tgttatatta ttatattatt acaataatca atactaggct tttcctaaca tgggtaataa
     6241 tagtcaatca tcaaaaaaac ccctcaatcc tatccttaac atattatatt attctatagc
     6301 tctttcaatt atgctttttc gaaagatgag ttggagtata ttatgttttt tagttttagt
     6361 tagttcaag
//
LOCUS       DASQSJ010000233         3216 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_370850, whole genome shotgun sequence.
ACCESSION   DASQSJ010000233 DASQSJ010000000
VERSION     DASQSJ010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370850"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2065
                     /locus_tag="VE223_04560"
     CDS             <1..2065
                     /locus_tag="VE223_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HZC20895.1"
                     /translation="ESSPYLLQHAYNPVDWYPWGNESLLKAKNEDKPIFLSIGYSACH
                     WCHVMAHESFEDEETAKVMNEKFINIKVDREERPDIDDIYQRVCQLATGNGGWPLSVF
                     LTPDQKPFYVGTYFPKQSRYGMPGFETILNQLSEAYKTRKQEIYSATGEFMQALSNTS
                     KDVQYRGENVKIDRSILDEAAIGLLQMGDPVYGGFGQAPKFPNTSNLLFMLRYYKISS
                     ISRFKEFVVFTADKMADGGIHDHIGGGFARYSTDQKWLVPHFEKMLYDNALLVLLYAE
                     LYQITSSKRYLHVVQSILDYVIREMTSPDGGFYSAQDADSEGEEGKFYTWSRGEIANA
                     LGNENLADIFCEHYGVTQGGNFEGKNILNIVTSLDRLSEKYNMEPTIMQQIIKDASRK
                     LFEIRDKRVKPGRDDKILTAWNGLMISGFAKGYRITNNKKYLDHAVNTINFIETKIAN
                     SDGRLQRTFKNGISKLNGYLEDYAFYVNALLDVFEVYSNPEYLEKAITYTNFMLRHFW
                     DDNDGALFLTSDDHEQLIVRTKNFYDLATPSGNSIAASNLLRLYYIVQNREYLEKAER
                     IIKVCARLAAENPFGFGQLLISMYMYIQPPVEIVIIGGTNNKEDSQSISNWLNMQFIP
                     NGIICVIKDKLQLEKLQKYPLFKGRNLDEENKSECVFICKNLTCLPPISSIPELEKHI
                     RTSHN"
     gene            complement(2425..2721)
                     /locus_tag="VE223_04565"
     CDS             complement(2425..2721)
                     /locus_tag="VE223_04565"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HZC20896.1"
                     /translation="MGYENLLIVVMVAIALLFGAKKLPELARSLGRAQSEFEKARMDV
                     RQGIGGMDHIEASEKRRKLEDIASKLEIENINSLSDEELHKKIRESIKSDNHDV"
     gene            complement(2907..>3216)
                     /locus_tag="VE223_04570"
     CDS             complement(2907..>3216)
                     /locus_tag="VE223_04570"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HZC20897.1"
                     /translation="TPMDIIELGILNVTKRFKSKVNEKKYVSIDLDCLDPSFAPAVSV
                     PSAGGLSSTDLIYLVKQAVESGVMGMDIVELCPDFDVNDTTANLAARILLESIASMKY
                     "
BASE COUNT         1075 a          585 c          602 g          954 t
ORIGIN      
        1 tgaaagtagc ccataccttt tgcaacatgc ctacaatcct gtcgattggt atccctgggg
       61 aaacgaatct cttctaaagg cgaaaaatga ggacaaacca attttcctta gcataggata
      121 cagcgcatgc cactggtgtc acgtcatggc tcatgagtct tttgaggatg aggaaactgc
      181 caaggtaatg aatgagaagt tcatcaatat aaaagtagat agagaagaaa gacccgacat
      241 agatgacatc tatcaaaggg tttgtcaact tgcgaccggg aatggaggct ggccgttatc
      301 cgtatttttg acgcctgatc agaaaccatt ctatgtggga acatattttc caaaacaaag
      361 cagatatggt atgcccgggt ttgaaactat tttaaatcag ctatctgagg catacaagac
      421 taggaagcag gaaatttatt ctgcaactgg cgaatttatg caggctctat caaatacatc
      481 aaaagacgtt caatataggg gagaaaatgt taagattgat agatcaatct tagatgaggc
      541 agctatagga ctgcttcaga tgggcgatcc tgtatatggt ggttttggac aagcaccaaa
      601 atttccgaat acttctaacc ttctttttat gttgcgatac tataaaattt caagtattag
      661 tcgtttcaaa gagtttgtag tatttacagc agacaaaatg gccgatggcg gcattcatga
      721 ccatatcggc ggaggatttg caagatactc aacagaccaa aaatggcttg ttccccattt
      781 tgaaaagatg ctttatgata atgcattatt ggtattgctc tatgcagagt tatatcagat
      841 tactagcagt aaaagatacc tacacgtcgt acagagcatt cttgattatg tcattcgaga
      901 gatgacttct ccagatggtg gtttttactc tgctcaggat gctgattctg aaggcgagga
      961 gggtaagttc tatacatggt caagagggga aattgcaaat gctcttggaa atgaaaatct
     1021 tgcagacatt ttctgcgaac attatggagt aacacaagga ggtaattttg aaggtaaaaa
     1081 tatcctaaac atcgtaacgt cattagatcg cctctcagaa aaatacaata tggaacctac
     1141 tataatgcaa cagattataa aagatgcatc tagaaaactg tttgagataa gggataaacg
     1201 ggtaaagcca ggaagggatg ataaaattct gactgcatgg aacgggttga tgatctctgg
     1261 ttttgcaaaa ggatatcgta taaccaacaa caaaaaatat cttgaccatg cagttaatac
     1321 tataaatttt attgaaacta aaattgcaaa tagcgatggt agattacaac ggacctttaa
     1381 gaatggaatt tctaaactga atggatactt ggaggattac gcattttatg tcaatgcatt
     1441 gctggatgtg tttgaggttt attccaaccc cgaatatctg gaaaaagcaa taacttatac
     1501 caattttatg ctacggcact tttgggatga taatgatggc gcattatttc ttacttccga
     1561 tgatcatgaa caactcattg ttagaaccaa gaacttttat gatcttgcaa ctccgagtgg
     1621 taattcaata gctgcatcga acctgcttag attatactat attgtacaaa atagagagta
     1681 tttagagaag gcagaaagga tcattaaagt gtgtgccaga cttgcagcag agaatccttt
     1741 tggatttggc cagctactta tatcaatgta tatgtatata cagcccccgg tcgagatagt
     1801 gatcattggg ggaacgaata ataaagagga ttctcagtct atatcgaatt ggttaaatat
     1861 gcagtttatt ccaaatggga ttatttgcgt catcaaggac aagctacaac tagaaaagct
     1921 acaaaaatat ccattattta agggaagaaa tttagatgaa gaaaataaat ccgaatgtgt
     1981 atttatctgc aaaaacctta cttgcttgcc accaatttcc tcaattccag aattggaaaa
     2041 gcacattaga acttcccata actgaaaata ttactccatc aagtaatggc atcggagaca
     2101 tttacgtatc aaataatcaa ggaactatta tcaaattggt tttataatta acagattgac
     2161 ctggatcaga gcgttactgt agaatatagt gaccatctat gacaataagg taaaactaat
     2221 atcccttctc aacctaatta ctacactaca caattaattg aaatagagtt aacgtatagt
     2281 cacttgataa tctatattga agtgaattaa gagtgtccaa taacgcgatt accgttcatt
     2341 acgatacagc atgcacattt ttgctgtaaa catagtttcg ctaatattct ttagataatg
     2401 ttgcagattg tatagactag gacatcatac atcatggtta tcgcttttta tagattcgcg
     2461 aatcttctta tgaagttcct catcagaaag agaatttata ttttcgattt caagctttga
     2521 cgctatgtct tccagctttc tcctcttttc gctagcctca atatgatcca taccgccgat
     2581 cccctgtctg acgtccatcc tggctttttc aaattctgac tgtgctctac ctaatgacct
     2641 agcaagttcg ggcaatttct tagctccaaa taacaatgca atagccacca taacaacaat
     2701 gagaagattt tcatatccca tacaactttt tacctgtcaa tatattataa caacgcccct
     2761 atgtataatt tctgatcact ataagtgtag aaatgattga aaataatcag aaatatgaaa
     2821 tacactatta tagaaatcct attgacgaag gagattatca cgagttaatt ggtctcatac
     2881 tctcctaaat ccatcgtata tacacatcag tacttcatag aagcaattga ttccaatagt
     2941 atccttgctg ctaaattggc ggtcgtatca ttaacatcaa agtcaggaca aagttctaca
     3001 atatccattc ccataactcc actttctacc gcctgtttga caaggtaaat aagatctgta
     3061 ctcgatagac caccagcaga aggaaccgat actgctgggg cgaaagaagg atcaagacaa
     3121 tcaagatcga tggaaacgta tttcttctca tttactttgg acttgaatct cttagtcacg
     3181 tttaaaatcc ctaattcgat aatatccata ggtgta
//
LOCUS       DASQSJ010000234         9402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_411833, whole genome shotgun sequence.
ACCESSION   DASQSJ010000234 DASQSJ010000000
VERSION     DASQSJ010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411833"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(198..908)
                     /locus_tag="VE223_04575"
     CDS             complement(198..908)
                     /locus_tag="VE223_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HZC20898.1"
                     /translation="MMISIGFYNWNLVISIIGSFAIGALSMMIYNKLRLYNKASNSQT
                     NENIIEAIISEYSARLKGFERTVMDMVMRIDIMELWILRQHPSPIPSKRDINPDSLSP
                     TSHHQSHEQEKFLTLSRSIAKPTQDSSKQIVDKDNLTTTQNVTTDHILKLLIERPRTS
                     REIQYAIGRTREHTSRLMKRLYQTNLVSRESGSKPFKYTITDAGLLRLNTHQQTNYKD
                     HPIAVDSYSSGLQSQTAA"
     gene            complement(959..1234)
                     /locus_tag="VE223_04580"
     CDS             complement(959..1234)
                     /locus_tag="VE223_04580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20899.1"
                     /translation="MSHQTVPKNISRGAYHRQLKQCRNKIVDVLYSILLLKSIGAIDQ
                     QTLSILGTMCDQLAVTLDIVNSDISRNKVTDNVMSTVNDILKKMCKV"
     gene            1468..2208
                     /locus_tag="VE223_04585"
     CDS             1468..2208
                     /locus_tag="VE223_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HZC20900.1"
                     /translation="MWNNVEDYIHKEIKKHGTLCFPLVDTENSSEAACIAKKAEKIGA
                     SAILVGGSSTIDQLELMDVVSSIKSQVSIPVILFPGNVTGVSPKADAILFSSLLNSES
                     PYFITEAQALGALAVKKHKIEPLPTGYLIIGEGTTAWFIGHARGIPFNKSGIAIMYSL
                     AAQYLGMRFLYLEAGSGANQNISPQMVASVRKHYEGILIIGGGIRTPETAKEIAKAGA
                     DIIVIGTIIEKDKNWESIFSSIINSIRR"
     gene            2218..5751
                     /locus_tag="VE223_04590"
     CDS             2218..5751
                     /locus_tag="VE223_04590"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HZC20901.1"
                     /translation="MKVTDDAEILLKNVPMPQYYLNYQQCILKNVQQAFEVATKARKK
                     GSDVSDIVETKIAYDLADRVAKMHNIDIANRLRSLLSHTTKEKAALKIAEEIAIGEYG
                     IGDLQTRLNNAVRVSLAVVTEGVTVAPLQGIADVQLKNNSDGSQYLSISFAGPIRSAG
                     GTEAALTMLIADHARKIAGVEKYIANSYDDETGRFIEELRIYEREVGNFQFKVLDEDV
                     VKCIVSLPVELNGVDTDPVEVVGHRGMKRIPTDRVRGGALRVMNDGLIGRSRKLVNLV
                     EALKLDGWDWLKNLKGAIQTGDDDAIHHRMSEVITGRPVLSMAKRIGGFRLRYGRCYN
                     TGFATVGIHPAVPVLLSDAIVVGTQIKMDVPGKASTIALVDSIEPPIVRLDNGSVMQI
                     TTIEHAIMMRPRIEKILYLGDMLISYGDFLENNAQLLPSSYVEEIWTLELKAKLSTLP
                     SFSSIDLPDKITKERLMQLSKEHFTTVPTIDEAFAISKWLNIPLYPKYSFYWDSITID
                     EVLLLKKKFAKQEICYQQNNVVEDYNCSFSSISLPNDDPKLKDILERLGVIHSVKNGN
                     KVIVIDNIDQIFSLTKLLFEPAAEATTSFSTLTVESIKKKDVIGFISKTSGIEVKPKF
                     ASSIAVRVGRPEKAAERKMKPPVHVLFPIGSRGGATRDILKAAKDESFYTELANRFCN
                     NCKLPSIGIQCNNCGCPTPLRNLCIVCREEIADDIKNSQCYRCGKQGKTYSPISYPLK
                     TVLEEVQRKLDIKATEPLKGVQTLMSKDRAAEPLEKGVLRQKYGLFTFKDGTIRFDAT
                     NEPLTHFKPKWTMASTERLRELGYNEDYLGMNLTLPDQLVELLMQDIIVPLEAAKHLL
                     NVAKFIDEELVKLYRLEPFYNASSEKDLVGHMVVGLAPHTSVGIIGRIIGFTDSQVCL
                     ASPVWHSAKRRDCDGDADSLILLMDAFLNFSFDFLPDKIGGLMDAPLLIQPLVLPYEV
                     QRQAHNVDVVPIYPLEFYESTWKQSKAGELSDKIETIRNRIGSENQFFDYAFTHPTGL
                     ITTNGQRSAYSRLNTMDEKLEMQIAIAKLINAVDPDEVVSMVLVTHILPDIMGNMRSY
                     SSQAFRCSRCGEKYRRMPIMGKCLGCENELLQTVTRGSVEKYIGIATNMCNQFKVNDY
                     LRSRVESLVMELKLIFKERKKEQSSLIEFMG"
     gene            complement(5860..7200)
                     /gene="glyA"
                     /locus_tag="VE223_04595"
     CDS             complement(5860..7200)
                     /gene="glyA"
                     /locus_tag="VE223_04595"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HZC20902.1"
                     /translation="MSTKAFHDKVLRLMKEHHDWFNKSIPLIASENIPSPAVREAIIS
                     DFGNRYAEGWPGDRVYAGCTYIDQVEIICNDLAKKVFRAEFADCRATSGVVANLAIYA
                     AFSNPGDYMMAASIPNGGHISHGKKEHSGTAGLVHGLNIEHYPFSKEEMTIDVDATKR
                     KIEEMIRNGKVPKIGMFGGSLFLFPHPVKELSNFMHDHGMYVNYDGAHVAGLIAGGEF
                     QDPLKEGADSMTMSSHKTLWGPQGGIIVSFEKRADAIKKAIFPGNTSSHHLHHVAGKA
                     IALAESLEFGKDYAKQVIKNAKALAGALVEYGFRVLGEKRGYTESHQIAVDVSKFGDG
                     GSVEKKLEKANIILNRQLLPGDIKAGRHYMHPSGVRIGVPETTRLGMKEGEMKEIANF
                     IKRVVVNMQDPNIVAKDVADFRKQFQKVQYTFDNTLGAYEYINLVGTNQIYNEQ"
     gene            7339..7467
                     /locus_tag="VE223_04600"
     CDS             7339..7467
                     /locus_tag="VE223_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20903.1"
                     /translation="MGITGVKWRCPSCNADVGGSMGELKNHIKNVHSTTTFAIEQK"
     gene            7711..7848
                     /locus_tag="VE223_04605"
     CDS             7711..7848
                     /locus_tag="VE223_04605"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HZC20904.1"
                     /translation="MEAYCVKCKSKRSMKDEKKVTMKNGKPATQGICSICGTKMFKIG
                     K"
     gene            8805..8898
                     /locus_tag="VE223_04610"
     tRNA            join(8805..8836,8855..8898)
                     /locus_tag="VE223_04610"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8859..8861,aa:Pro,seq:ggg)
BASE COUNT         3012 a         1634 c         1801 g         2955 t
ORIGIN      
        1 tggtctctgg ttccaaaata tggttagctc aggagaattc ctatctgtca atttcatctc
       61 ttcaaatatc ttgaatattt aaagagaccc atgacgaatc tatccaacta agcataactt
      121 ctacttattt gtcgggatac tctgaaagag atagacttat tagaaccgaa aaaggaacga
      181 atggatgtgc acaataacta ggcagcagtc tgtgattgga ggccagaaga atatgagtca
      241 acagcaattg gatgatcctt gtaatttgtc tgctgatgtg tattcagcct tagaaggcct
      301 gcgtccgtaa tagtgtattt gaagggtttg ctaccgcttt ctctacttac aaggtttgtt
      361 tgataaagtc ttttcataag acgtgatgta tgttcccttg ttctcccaat agcgtattgt
      421 atttctctcg aagtcctggg tctctcgatc agtaatttta agatatgatc tgtagtgaca
      481 ttttgtgtag tggttagatt atctttgtca actatttgct ttgatgaatc ttgtgtgggc
      541 tttgcaatag acctactgag tgtcaagaat ttttcttgct catgtgattg gtgatgtgac
      601 gtcgggctta gggaatctgg atttatatca cgcttagagg gaattggtga tggatgttga
      661 cgtagtatcc ataattccat aatgtctatt ctcataacca tgtccattac tgtcctctca
      721 aagcccttta accgagccga atactctgaa ataatcgctt cgatgatgtt ttcgttagtc
      781 tgggaattcg atgctttatt atacaatctt agcttattgt atatcatcat actaagagca
      841 ccgatagcaa aagatcctat gattgatatc actaagttcc aattataaaa cccaatactt
      901 atcatcatgt cacgatgtag agcgataccg tgatttattc ctatagagaa agataagttt
      961 acaccttaca cattttcttt aggatgtcgt taacggtaga catcacgtta tctgtaactt
     1021 tattacgaga aatatcacta ttcactatat ctaacgtcac ggccagttga tcacacattg
     1081 ttccaagaat agaaagtgtt tgttggtcga tagctccaat agatttcagt aacaatatac
     1141 tataaaggac atcaacgatt ttgttccggc actgctttaa ctgtctgtga tatgcaccac
     1201 ggcttatatt tttaggaaca gtttgatgag acaatcgatt ataaataata tctatttgtc
     1261 tctcagtaaa taaagaattt gcaataattt ctctataaat aatgttaaaa tatgattcat
     1321 aattactcat gaagctatac tgatctgtat atcaacgaat aaaaatatta tgatatagat
     1381 ggtaaattgt tttgcagaaa catagttaaa gaacatagaa tcattgatag caattatgta
     1441 tacggctatt gagatcttgg aagcaacatg tggaataatg tagaggatta tattcataag
     1501 gagattaaaa aacatgggac attgtgcttt cctcttgtag atactgaaaa ctcttctgag
     1561 gcggcctgca ttgccaagaa ggctgagaaa ataggggctt ctgcaatttt ggtaggtgga
     1621 tcttctacga ttgatcaact cgagctcatg gacgtagtct caagtatcaa gtcacaagtc
     1681 agcattcctg tgatattgtt tcctggcaat gttactggag tgtctcctaa agcagacgct
     1741 attttgttta gctctttgct taactcagaa agtccttact ttatcactga agctcaagca
     1801 ttgggagctc ttgctgtaaa gaaacataag atcgaaccat tacctactgg ttacttaatt
     1861 ataggtgaag gtactactgc atggtttata ggtcatgctc gcggaatccc ttttaataaa
     1921 tcaggaattg ccattatgta ttctctagcg gcgcaatatc ttggcatgag atttctgtat
     1981 cttgaggcgg gctcgggtgc caatcagaat atctcaccac aaatggtggc gtctgtaagg
     2041 aaacattatg aaggaatcct tattataggt ggcggaattc gaacaccgga aactgcaaaa
     2101 gaaatagcta aagcaggtgc agacatcatt gtgattggta caattattga gaaagacaag
     2161 aactgggaaa gtatattctc ttcaattatc aactctataa ggagatgatg gaagcaaatg
     2221 aaagtgacag atgatgctga gattcttttg aaaaatgttc ctatgccaca atattatttg
     2281 aattatcagc aatgtattct aaaaaatgta caacaagcat ttgaagtagc tacaaaggca
     2341 cgtaaaaaag gatcagatgt ttctgatatt gtagaaacaa agattgctta tgatctggca
     2401 gacagagttg caaagatgca caatattgac attgcaaaca ggttgcgttc tttactttcg
     2461 catacaacca aggaaaaggc tgcacttaaa attgctgagg agattgcaat aggagaatat
     2521 ggcattggtg atctccaaac taggttgaat aatgccgttc gtgttagcct agccgttgtt
     2581 acagaaggtg taacagttgc ccctttgcag ggaattgctg acgtccaatt aaagaataac
     2641 tctgatggca gccaatatct ttcgatatct tttgctggcc ctataagatc cgcaggagga
     2701 actgaggctg cgcttactat gctaatagca gaccacgcaa gaaaaattgc cggcgtggaa
     2761 aaatacattg caaactcata tgatgatgag accggaagat tcattgaaga gctcagaatt
     2821 tatgaacgtg aagttggaaa ttttcagttc aaagtattag atgaggatgt agttaaatgt
     2881 atagtcagtt tgcccgtgga gcttaatggt gtagacactg atccagtaga agttgtcggt
     2941 catcgaggga tgaagagaat ccctacagat agagtgcgtg gtggtgcttt aagagtaatg
     3001 aatgacgggc ttataggtag aagtagaaag ttggttaacc ttgtcgaagc attaaaattg
     3061 gatggctggg attggctcaa gaaccttaag ggagcaattc agacaggtga tgatgatgcg
     3121 atacaccaca gaatgtctga agtgattact ggtagacctg tactttctat ggcaaagaga
     3181 attggaggct tccggttaag atatggtaga tgttataata ctggttttgc aactgttgga
     3241 atccatccag ctgtacctgt attattaagc gatgccattg tagttgggac tcaaattaaa
     3301 atggatgtgc ccggaaaagc atcaaccata gcacttgtag attctatcga acctcccatt
     3361 gttaggcttg acaatggcag tgtgatgcaa ataactacaa tagaacacgc tataatgatg
     3421 cggcctagaa ttgaaaaaat actctatctt ggtgatatgc taataagtta tggtgatttc
     3481 cttgaaaata atgctcaact gctgccatct agttatgtag aggaaatttg gactttagaa
     3541 ttgaaggcga aattatcaac attgccatca ttttcatcaa ttgatttgcc tgataagatt
     3601 acgaaagaaa ggctaatgca gttatcaaag gaacatttca caacagttcc aacaattgat
     3661 gaagcctttg caattagcaa atggttaaat attccacttt atccaaaata ttcattctat
     3721 tgggactcta tcactataga tgaagtttta ctattgaaaa aaaaatttgc taagcaagaa
     3781 atatgctatc aacagaataa tgttgttgaa gattataatt gcagcttttc ttccattagc
     3841 ttacccaatg atgacccgaa gttaaaagat atcttggagc gactaggagt cattcattca
     3901 gtaaaaaatg gaaacaaggt tattgttatt gataatattg atcagatatt ttccctaacc
     3961 aagttgttgt ttgaaccagc agcagaagca acgacgtcgt tctcaactct aactgttgag
     4021 agtattaaga aaaaagatgt tatagggttt atttcaaaaa catcaggcat tgaagttaag
     4081 ccaaagtttg cctcttcgat cgcagtaaga gttgggcgtc ccgaaaaggc tgcagaacgt
     4141 aaaatgaaac caccagttca tgtgttattt cctattggct ctagaggtgg tgcaactcgt
     4201 gatatattaa aggcagcaaa ggatgaatca ttctacactg aacttgcaaa tagattttgt
     4261 aataattgca aactcccttc tattggaata cagtgcaata attgtggttg tcctactcct
     4321 ctacgtaatt tatgtatagt ttgtagagag gagattgccg atgatatcaa aaacagccaa
     4381 tgctatagat gtggtaaaca aggtaaaact tactctccca ttagctatcc actaaagaca
     4441 gtacttgaag aagtacaacg gaaacttgac atcaaagcaa ctgaaccact taagggcgtc
     4501 cagactctta tgagcaagga cagggcagcc gagccgctag aaaaaggagt tctgagacaa
     4561 aaatacggcc tttttacttt caaggatggg actattcgat ttgacgcaac aaatgaaccg
     4621 ttgacccatt ttaaaccaaa atggactatg gctagtacag aaagattaag agaattaggt
     4681 tataatgaag attatcttgg tatgaatttg actttaccag atcagttagt agaactgtta
     4741 atgcaggata taatagtacc cttagaagct gctaaacatt tacttaatgt agccaaattt
     4801 attgatgaag aacttgtaaa attatatcgg cttgagcctt tctataatgc atcttctgaa
     4861 aaagaccttg tgggacatat ggtagtcggg ctagcgccac atacctctgt aggtattata
     4921 ggaagaatca taggtttcac agattcacag gtctgtctgg catcacctgt ttggcactct
     4981 gcaaaacgta gagattgtga tggcgatgca gattctctaa ttctacttat ggatgccttc
     5041 ttaaacttct cattcgactt cttgcctgat aaaattggcg gacttatgga tgcacctcta
     5101 ctaatccagc cgctagtgtt gccctatgaa gtacaaagac aagcccataa tgttgatgtc
     5161 gttccaattt atccactaga attttatgaa tcaacctgga aacagtccaa agctggagag
     5221 ttatctgaca aaatagaaac tattagaaat aggattggaa gtgaaaatca attttttgat
     5281 tatgcattta cacaccctac tggtctgata acaaccaatg gtcagagaag tgcatattct
     5341 aggctcaata ctatggatga aaaattggag atgcagatag ctatcgcaaa actgatcaat
     5401 gcagtagatc ctgatgaggt ggtatcaatg gtgctcgtta cacatatttt accagatatt
     5461 atgggcaata tgcgttcata ttcttcacaa gcttttagat gcagcagatg tggagaaaaa
     5521 tatcgcagaa tgccaattat gggcaagtgc ttaggatgtg aaaatgaact tttgcaaaca
     5581 gttaccagag gttcagttga aaaatatatt ggtattgcaa caaatatgtg caaccaattc
     5641 aaagttaatg attatctgcg cagcagagtt gaatctttag taatggaatt gaaattaatc
     5701 ttcaaggagc gaaagaaaga acaatctagt cttatagaat ttatgggtta atcaacggca
     5761 atttcgtaca gaaatatcaa tttatattga tcatttgaaa ataagtcaga tcttaagccg
     5821 caatagaaaa ataaatctat attcaacgct aaacattctt tactgttcat tataaatctg
     5881 atttgtacca accagattga tatactcgta tgcacccaat gtgttatcaa atgtatactg
     5941 aactttttgg aattgttttc tgaaatcagc aacatctttt gcgacaatgt tgggatcttg
     6001 catattgaca accacacgct ttataaaatt ggcaatctct ttcatctcac cttccttcat
     6061 tcctaatctg gttgtctcag gaactccaat tcttactcca cttggatgca tataatgtcg
     6121 tcctgctttg atgtcccctg gcagtaactg tctattcaaa attatattgg ccttctcaag
     6181 ttttttttca acactaccgc catcaccaaa ttttgaaacg tctactgcaa tctgatgcga
     6241 ttcagtatat ccacgctttt cacctagcac tctaaaacca tattctacca aagctcccgc
     6301 aagcgcctta gcatttttga ttacttgctt tgcataatct tttccaaatt ctaatgattc
     6361 tgctaatgca atagcctttc cagcaacatg atgtagatga tgactgctag tattaccagg
     6421 aaagattgct ttcttgattg cgtctgcacg tttttcgaat gatacaataa tcccaccctg
     6481 cggtccccag agggttttgt gtgagctcat ggtcatggaa tctgctcctt cctttaatgg
     6541 atcttgaaat tctccaccag ctataagtcc agcaacgtgg gctccatcat agttaacgta
     6601 catgccatgg tcatgcataa aattcgacag ttcctttaca gggtgtggaa aaagaaataa
     6661 acttcctcca aacattccta tctttggtac tttgccattg cggatcattt cctcgatctt
     6721 tctttttgta gcatcaacgt ctattgtcat ctcttccttt gaaaaaggat agtgttcaat
     6781 gttcaatcca tggacaagac ctgcagtgcc ggagtgttcc ttctttccat gcgaaatatg
     6841 ccctccatta ggaatagagg cagccatcat gtaatcacct gggtttgaaa acgcagcata
     6901 aattgcaagg tttgcaacca caccagatgt ggccctgcaa tcagcaaatt cggctctgaa
     6961 aacttttttt gctaaatcat tgcaaattat ctctacctga tcaatgtaag tgcaaccagc
     7021 ataaactcta tcccccggcc atccttctgc gtatctatta ccaaagtctg atattattgc
     7081 ttctcttact gctgggctcg gaatattttc gctggcaata agaggaattg atttattaaa
     7141 ccagtcatga tgttctttca tcaatcttaa gactttatca tggaatgctt ttgtactcat
     7201 ttagatacac atcttgcact gcttttccta atttaaaata tcccataatt tataatagtt
     7261 gagcatgtgt ttttataaaa agtcatccta tagattataa aacgtaactt gtatatgtga
     7321 tgtagtcaaa gtttacacat gggaattact ggagtaaaat ggaggtgccc atcgtgtaat
     7381 gccgatgttg ggggaagtat gggtgaatta aaaaatcata taaaaaacgt tcatagcact
     7441 actacttttg ctattgaaca aaagtaaagt gacaaacagt attatgtaga cataaagcat
     7501 tgattagcca taatgatgag attacgtatt gtgctgatga ggtttgtaat tggtgatatt
     7561 taattaattt agtgcaaggg atattcttat gatacctaaa tcgtataaat gctcatcgta
     7621 tccaaggtat ttaaggagaa gtccctctag gctttatgac aatcatttta taccctgctc
     7681 tttttattct gcttaactac ttgcattgcc atggaagcat attgtgttaa atgcaagtca
     7741 aaaagatcaa tgaaagatga gaaaaaggtt acaatgaaaa acggaaagcc tgcaacccaa
     7801 ggaatttgtt ccatctgtgg gacaaagatg tttaagatag gtaagtaagt gaaccttact
     7861 acttcttctt ttgtatgcca ttataacttt tttatagtct atcccataga aattacgaac
     7921 tacttctatg ggttctattc tatgcatact ttgaactagg tacattttat taggtaattg
     7981 tgaactcggg atctgtctag ttctacgtgc atctatgaga aacatccttg actagttatc
     8041 aatatgctgt ctatcacatt tgttgatttt aaagaatgtt cccatcaaaa cattcagtca
     8101 gtcatatatt tgatttgctg aataaacctc tccataatat tcgagatttg tttcttagat
     8161 gatatgcctg catgagactt aatcatttac atgtatcatc attatatcga catgctctgt
     8221 cgggatatat gggcttgctt tcaaatagtt ctaatctgtt caaaaaagaa ctgatagtat
     8281 acaaagatgg ttctttgata aatggaagta gtaaatagac agatattaaa ctggtttata
     8341 ataatctgac tatagccaac aataatcttc catttatctt caaagctttg tcaatgaata
     8401 cttcttgatc tttcgtcttc ctgttacaaa tgtttctgtt ggtgctgggt atctttgtaa
     8461 tgcatcgttt ccaaacagct aagctataga tgttcatttc ttctgatctc ataattgatt
     8521 ctgaattcgt gacttatgtg caaatctata gttcctaaaa ttagaataca tgtaggacca
     8581 tgtatagcgc aattaaaaat ggacatacct taatgtttta gaatatcgat aaaactatta
     8641 gacatactcc tttagatata tatgttattt caaaacttga ctaagttaaa ggagccatat
     8701 aacaatcgct tgaatatata agttgatata ttgataatta tacaatgtat atgcttaaca
     8761 accactgtac gtttaaaaga ggtaattcca atttgactgt tggaggggct atcgtctagc
     8821 ttggtctagg ataccatctc ataaagaggt ataagcctgg ggcgctggcg gtcgtgggtt
     8881 caaatcccac tggccccatg tcaatcttgt ggttttatta ggtgccgctc gatatattac
     8941 gttaaagaag ttgaagatca aatctaatac aacaactact tctattgcag caaatacact
     9001 aatactaaag caagaaccag aagaacagat aagaccatct actatattaa atattctatt
     9061 agtttgaaca actcgaaaat attatgaaag gaagttaaga agttcttaga tttattcgct
     9121 tgaggtctaa gaaacagaaa aaaggtatta aattgactta tctggatatt aaattagata
     9181 acacttttgt agtttcagaa aaaaagagca gataataaaa aagtaattgt tgctacttta
     9241 agagaatttg taaacattga aaaacttttg tgatagtact gatttaaaca tcaacggaag
     9301 aaaaataaca agaggtttac caaaggaaag caaatgatag agcaccgaca ataggtagaa
     9361 gaaattcgta aactaattga atatccagat aggaaatcaa gc
//
LOCUS       DASQSJ010000235         5536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_465642, whole genome shotgun sequence.
ACCESSION   DASQSJ010000235 DASQSJ010000000
VERSION     DASQSJ010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5536
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_465642"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VE223_04615"
     CDS             complement(<1..279)
                     /locus_tag="VE223_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HZC20905.1"
                     /translation="MHPEDNRYSEYIAEQIKKGTTTCALTCSDGVALAADTRASAGFF
                     IADRHVMKIQKVDRHLGMTIAGGVADAQNLVDIMRYNANIYRISNKELM"
     gene            385..1812
                     /gene="leuC"
                     /locus_tag="VE223_04620"
     CDS             385..1812
                     /gene="leuC"
                     /locus_tag="VE223_04620"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HZC20906.1"
                     /translation="MPKTIFEKIWDNHVVYFKKEGSNDGPSLLYIDRHLLHEVTSPQA
                     FDALRLNARRVRRPDLTFATMDHNVPTINRSLPIVDQISRTQIQALAENCKEFGITLF
                     DFNNPNQGIVHVIGPEMGITLPGTTIVCGDSHTSTHGALGALAFGIGTSEVEHVLATQ
                     CLWMYKPKTFAITITGKCKNPHAITAKDIILSIIKRIGTAGGTGTIIEYKGEMITDLS
                     IEQRMTICNMSIEAGARAGLIVPDQKAFDYIRGRTYTPKGEQFEKMVDYWRENLITDT
                     NAKFERDITLNVNDLVPQVSWGTNPSMVIDVTDTIPYPDDFANGNENERKAALRALEY
                     MALKPATPITDVRIDRVFIGSCTNSRLEDLFEASLVVKGRKVSCKVRAMVVPGSQKVK
                     IEAEKLGLDKVFKDAGFEWRESGCSMCLGMNSDILAPGERCASTSNRNFEGRQGSGGR
                     THLVSPVMAAAAAIEGHFVDVRKWL"
     gene            1831..2430
                     /gene="leuD"
                     /locus_tag="VE223_04625"
     CDS             1831..2430
                     /gene="leuD"
                     /locus_tag="VE223_04625"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HZC20907.1"
                     /translation="MEPFKVIKSKVTPLDISNVDTDQIIPKQFLKLIQRTGFGKYLFY
                     DWRFDRDGNPKREFVLNDPKYTGRQILLARDNFGSGSSREHAVWAIQDYGFKAIVAQS
                     FADIFYINCFKVGLLPVSLSSEEIEYLFRNTDLDVEIDLFNQQVTIGTIITNFKIHEY
                     RKKALLQGLDEIGVTLQLESKIAEYEKKNKAIVPYTDKP"
     gene            complement(2739..2879)
                     /locus_tag="VE223_04630"
     CDS             complement(2739..2879)
                     /locus_tag="VE223_04630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20908.1"
                     /translation="MINIISQCVICGGSPVSDLVEPEVEKQGQLKAGQILEMPMKLVY
                     EK"
     gene            3127..3330
                     /locus_tag="VE223_04635"
     CDS             3127..3330
                     /locus_tag="VE223_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20909.1"
                     /translation="MSITRKIRIDIEIEVEIPFDIVDNEDRFTRVKEGILKSMSKGLY
                     EEGVAFKIKKTSFGLQDNRSEAS"
     gene            3490..4005
                     /locus_tag="VE223_04640"
     CDS             3490..4005
                     /locus_tag="VE223_04640"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HZC20910.1"
                     /translation="MKSEQFSTNILNLDSAIRFAGIVEKSGHLYAGNTRAGIKEHLKG
                     RDPELSLAQSAYIVDLRRMFTSELGSLRYVIYTYDKVKMISIPVKDHVLVFSADDSAN
                     TDNLIDKVSKYIESVESELSLYPPSNIINNEKREIVRNLHISGIPENMIADQLDLDIN
                     TVKMLIHEISS"
     gene            complement(4491..5273)
                     /locus_tag="VE223_04645"
     CDS             complement(4491..5273)
                     /locus_tag="VE223_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20911.1"
                     /translation="MPLPRLSQQNPLSLNELDIYSPELAIIISYPLFNVLQYANRLNE
                     IGSLGITHVLPTGSTKIGKMAIAGKGSVSIVLKVKTKGKICALKIRRTDANRETMKRE
                     VSMHKIANSVDVGPELFGFSKNLISMEFIDGLSIVDWVKQQDITSDEVRKVAISILEQ
                     CYNLDKAHMDHGELSCINHHVIISKSNTANIIDFESSSTQRKSRNVTAAAQSLFISRG
                     LISNRVNEVLGYTKKEKNIEVLKTYKWNQNKANFDKIIDAFC"
     gene            complement(5227..>5536)
                     /locus_tag="VE223_04650"
     CDS             complement(5227..>5536)
                     /locus_tag="VE223_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20912.1"
                     /translation="GPEIFRKDATARFISKNNRKSLLMWIDKETRVKSLIERRTKNAT
                     DYVKLLLSGRIESTGITKGLIIDIQTTLQIYTGDKRKIKGIIKDAITKTITTESIIFE
                     "
BASE COUNT         1781 a          951 c         1012 g         1792 t
ORIGIN      
        1 catcaattct ttattagata ttcgatatat gtttgcatta tatcgcataa tatcaactag
       61 attctgggca tcagctacgc cacctgcaat tgtcatacct agatgtctat caactttctg
      121 aattttcatc acatgcctgt cagcaataaa aaaaccagcg cttgctcttg tatcggcagc
      181 tagtgccaca ccatcgctgc aggtcaacgc acaggtagta gttcctttct tgatctgctc
      241 tgcaatatat tcagagtatc gattatcctc aggatgcata cttgcatacc agaatcaata
      301 ctaaatttaa gcattgccaa taaggggttt ttgggacata tggttttata tttatgttat
      361 aagttaattg aaacaagcac tagtatgccc aagacaatat tcgagaagat ttgggataac
      421 catgtagttt attttaaaaa agaaggttct aatgatggac cctcattact atacatagat
      481 cgtcacctat tacacgaagt cacttctcca caagcatttg atgcacttcg attaaatgcg
      541 agaagagtca ggcgcccgga tctaacattt gcaactatgg atcataatgt accaacaatc
      601 aatagatctc ttccgattgt tgatcaaatt tctcgtacac agattcaggc attagcagaa
      661 aattgcaaag aatttggtat tactcttttt gactttaata acccaaatca aggtattgtc
      721 catgttattg gacctgagat gggtataact cttcctggga caactattgt ttgtggtgat
      781 agccatactt ccacccatgg tgcccttggc gcgcttgcat ttggtatcgg taccagtgaa
      841 gtggaacatg ttctggctac tcagtgcttg tggatgtaca aaccaaagac ctttgcaatt
      901 actatcaccg gcaagtgcaa aaatccacat gcaattactg ctaaagacat tatactttcg
      961 attatcaaga ggattggaac tgcaggcggt accggaacaa tcatagaata caaaggcgag
     1021 atgattaccg atctttctat tgaacagagg atgactatct gcaatatgtc tattgaagct
     1081 ggtgctagag caggattaat tgttcccgac caaaaagctt ttgattacat ccgggggaga
     1141 acatataccc cgaaaggcga acagtttgaa aagatggttg actattggcg tgagaatttg
     1201 ataactgata ctaatgcaaa gtttgaaaga gatataactt tgaatgtcaa tgatcttgta
     1261 ccacaggtca gctgggggac taatccctca atggtaatag atgttactga tacaattcca
     1321 tatcctgatg attttgcaaa tggaaatgaa aatgaaagaa aggcagcatt acgggcttta
     1381 gaatacatgg cactcaaacc agctactccg attacagacg tccgaatcga tcgagtattc
     1441 atcggttcat gtaccaattc tagattagaa gatctattcg aagcatcact tgttgtaaaa
     1501 ggaagaaagg tatcgtgcaa agttagagca atggtagtac ctggttccca aaaagtaaaa
     1561 attgaagcag agaaattagg attagacaaa gttttcaaag atgctggatt tgaatggcgg
     1621 gaatctggat gtagtatgtg tcttggaatg aattctgata tccttgcgcc tggcgagcgt
     1681 tgcgccagca cttcaaatcg taactttgag ggacgtcaag gaagtggtgg aagaacgcat
     1741 cttgtaagtc ctgttatggc agcagccgca gcaatagaag gacattttgt tgatgtaaga
     1801 aaatggttat aacaacaagg tgaccgcgag ttggaaccct ttaaagttat caaaagtaaa
     1861 gtgactccac tagacatatc taatgtagac actgatcaaa taattccaaa acagttcctt
     1921 aaactgattc agaggactgg ttttggcaag tatttatttt atgattggcg ctttgataga
     1981 gatggaaatc caaaacgtga gtttgtatta aacgatccaa aatatacagg ccgacagatc
     2041 ttgctcgcac gtgataattt tggtagtgga agttccagag aacatgctgt ttgggctatt
     2101 caagattatg gattcaaagc aatagttgca caatcgtttg ctgacatttt ctatattaat
     2161 tgcttcaagg ttggactttt gccagttagt ttaagcagtg aagaaattga gtatttattt
     2221 agaaataccg atctggatgt tgagattgac ctgtttaacc aacaggtcac tatcggcact
     2281 ataatcacaa attttaaaat tcatgaatat aggaaaaagg ccttgctgca aggtttagat
     2341 gaaataggtg ttactttaca gttagagtcc aaaattgctg aatacgaaaa gaaaaataaa
     2401 gcgatagtcc catacactga caagccataa tagatatgta taatatagaa aagttccatg
     2461 cgaaggtcaa ggaattatac acagattatg ttgatttttg tccaacaagg aattttagta
     2521 atatcgtagt ttaatgcgac tatagtaatc ctattagaac tggactatcg aaataataat
     2581 aacgttttat aattattttg atgatcccaa gctcagcaga tccctatgat ctatatatca
     2641 acaaattcag gcaaatccag tatatttata tgattaacaa caacccaaaa tagctttaat
     2701 agagaaatct gtggtcttca gcagtcatca cacaattatt atttctcata tactagcttc
     2761 atcggcattt cgagtatttg acctgctttt aattgtcctt gtttttctac ctctggttcc
     2821 actaaatcag atacaggaga accaccacat attacacatt gtgatattat gtttatcatg
     2881 caatatatta tcatacataa tataacttaa ttctatacaa tgaatttttg attccttatc
     2941 ggtcaacagt ttctttttaa ccgtaggaaa gtaatcttta ccagagaata atatttttat
     3001 acctttataa aaacaagagt ttaaagtgaa ggccgataga tagaagtaat ctatagtaaa
     3061 gtttgttatt attgatatgt tctaatgcaa aatattaata ggtttggatt ttgtcattga
     3121 acgtgattga gtatcacaag gaaaatcaga atagatatcg aaattgaggt ggaaattccc
     3181 tttgacattg ttgataatga agacagattt acaagagtaa aggaaggaat tttaaaaagt
     3241 atgtccaaag gactttatga agaaggagta gcctttaaaa tcaagaagac tagttttggg
     3301 ttacaagaca atcgctctga agcatcataa tttcttcgat gagaagtaga agtaccagta
     3361 tttagaagag ctatccaaac gagtattctg ctttaacatt tctcgagttt ttctgcatct
     3421 ctgtatctat ctatgttatt cacgacttct acaaaagggc tatatgatca atttatttac
     3481 aggttaaata tgaaatcaga gcaattctct acaaatattt tgaatctaga ctctgcaatt
     3541 agatttgctg gaatagtgga aaaatcgggg catctatatg caggaaatac tagggcaggc
     3601 ataaaggaac atcttaaggg aagagaccca gaattgagtt tggcccaatc cgcatatatt
     3661 gttgacttga gaagaatgtt tacttcggaa ctaggtagtt tgagatatgt aatatatact
     3721 tacgataaag taaagatgat aagtatacca gtcaaggatc atgtacttgt gttttcagca
     3781 gatgacagtg ctaataccga taatctaata gacaaagtct caaaatatat tgaatcagtt
     3841 gaatcagaat tatcactata tccaccatcc aatataataa acaatgaaaa gagagagata
     3901 gtaagaaatc ttcatatatc tggaattcca gagaatatga ttgcggatca actcgacctt
     3961 gacatcaaca cagtcaagat gttaattcat gaaataagca gttagtaaca ttcattcgtt
     4021 cttatttcag agaaaagata taactttata atttcttcaa tttcgcaatt tttcatccat
     4081 atattcgcat agcaggggct tgactgttcg tttctaatct tattttttct attagttcgg
     4141 cttccttcaa aattcagaag agcatcacat gatgtaccag ggattagcta ctgattgttt
     4201 atggactgcg gcggctgctc gaaaatctat agcatccttt aatacttaag ccataaaaca
     4261 atcaccgtca ttaaagttgg aatataattg catccttcgt ttaaaaggca tcattaaaca
     4321 gcattccaat atgttatagt attgaattct tcaactattt tacttataga aaaacaagtg
     4381 taaactagaa tgtgttgttg cagatttgca tagtaaaatg attcttcaga gaatgcttta
     4441 gtaattgggg ttctgaaaga cttgtactgt gcatattatt catgagccca ctaacaaaat
     4501 gcatctatta ttttgtcaaa gttggcttta ttctggttcc acttataagt ttttaagacc
     4561 tcgatatttt tttccttctt agtatatcct aacacttcat tcactctatt tgaaataagt
     4621 cctctgctta tgaataatga ttgagcagca gcagttacgt tgcgtgattt tctttgagta
     4681 ctggagcttt caaagtcaat aatattggca gtatttgatt ttgagatgat tacgtggtga
     4741 tttatacaac tcagttctcc atgatccatg tgtgctttgt ccaagttata acattgctct
     4801 aagatagaga tagcaacttt acgaacttca tctgatgtaa tatcctgctg cttcacccag
     4861 tcaactatac tcaaaccgtc aataaactcc atagagatca aatttttgga gaatccgaag
     4921 agttcgggtc caacgtcaac ggaatttgcg attttatgca tagatacctc tcttttcatt
     4981 gtctccctat ttgcgtcagt ccttcttatt ttaagagcac agattttgcc tttggtctta
     5041 actttcagaa caatgctcac gcttccctta cctgcaatag ccatcttgcc aattttcgtc
     5101 gatcctgtag gtaaaacatg tgtaatccca agggaaccta tttcatttaa gcgattagca
     5161 tattgtagaa cattaaagag tggatatgaa attataatgg caagttcggg tgaatatata
     5221 tcaagttcat tcaaagataa tggattctgt tgtgatagtc ttggtaatgg catcctttat
     5281 tattcccttt atttttcttt tgtctcctgt ataaatttga agagtggttt ggatatctat
     5341 tattaatccc tttgtaattc ctgtactttc aattcttcca gataaaagta attttacata
     5401 atctgttgca ttttttgttc ttctctcaat taaactttta acccttgttt ctttgtcaat
     5461 ccacatcaat agtgactttc tgttattctt tgatatgaat ctagcagtgg catctttcct
     5521 aaagatttct ggaccg
//
LOCUS       DASQSJ010000236         7787 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_252168, whole genome shotgun sequence.
ACCESSION   DASQSJ010000236 DASQSJ010000000
VERSION     DASQSJ010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7787
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252168"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VE223_04655"
     CDS             complement(<1..324)
                     /locus_tag="VE223_04655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMMECR1 domain-containing protein"
                     /protein_id="HZC20913.1"
                     /translation="MIKISDKDGEQLVRLARQAVKKYLDKSTIIHPVDQDQLSQEAGV
                     FVTLYYLGKNKEEHLRGCIGFPIPEKKLYQSVIEAAINAATQDPRFSSVGRDELANII
                     FEVSIL"
     gene            complement(640..1662)
                     /locus_tag="VE223_04660"
     CDS             complement(640..1662)
                     /locus_tag="VE223_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20914.1"
                     /translation="MVRDQYSNGSSSTATTTTTAARNNNNAAAQNQNSIDSNLKTLTE
                     FKKALLEEQKNGDQRIQELNNKIESTKIQIDEERTRLEDLRIVLKQINEQKDAEYAKF
                     MELKKSLIEARNKIKTFDEKAGSAATSKLRKERYDIVNLTKSLEHIEHDIQTKKLSKD
                     EERKLVSRSKEIATKLHTLKIMHKKEDHYRNISSRYEILKTKINSIFDQKSEFGNKIG
                     KLKASLDTLLNLRESLYEERRKEIHGIREIGAKLEMVETQLNAIEFRKSRMQYIQHRQ
                     RKQREGEERRASRYGATQERTKRNKENQERWNMLKEAALRKMSNGEKLTFDEMRLIFG
                     DSGTTE"
     gene            1805..2197
                     /locus_tag="VE223_04665"
     CDS             1805..2197
                     /locus_tag="VE223_04665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20915.1"
                     /translation="MDDFEKDFPDFNWKNMPAYRHPLGKDCPCPKHEYIREQINISKT
                     ISSNKWEASPEKKRKTHVTLKLCPDHYSVYFDEVIPSMPLKYRLMTKIALKIGAVVVQ
                     KIPYMQSDQCFYCKFGSGGFDKKTPIIR"
     gene            complement(2353..3075)
                     /locus_tag="VE223_04670"
     CDS             complement(2353..3075)
                     /locus_tag="VE223_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20916.1"
                     /translation="MYFINWQRDISIEELNGQKVVVKRNKRTKDFHEYLLISAYTLIS
                     ILLGHPSSPPLLGRMTISSEGYKMRRNLGQLGIPTPGLISYSDTALVEEYVEGGDLYR
                     AFSEGKGTPSLAFQAGALTGKLHKAGYVFIDNKSQNYLVTSDNLVVRTDLGFMQRKDS
                     VFSRSMDIGSFLASVIDFESFRYYAIEKAFFEGYRSEMRQDFPYLYIILRNMLSLGFA
                     SNQTAMFRNMLADSKSSGPKEF"
     gene            3148..3828
                     /locus_tag="VE223_04675"
     CDS             3148..3828
                     /locus_tag="VE223_04675"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZC20917.1"
                     /translation="MEIHQGYGNVRKFFNSENASSYDSIVHFTTFGRDSSWKKQIINI
                     ITKQGSVLDLACGTGILSSMLTDNVVMMRVIGLDLVFDYLRIAKKKRKNFLLTNGTAE
                     ILPYKCECFDFVVSSYLAKYVDIKRVVDESWRILNHDGTIVFHDFTYPKNILLQNFLR
                     AYFVILKMMGYLVKSWRVVFHELCQVIRTSGWIAQMKESLEERGFKNVSCKYYTFGMA
                     AIISAIKP"
     gene            3954..4550
                     /locus_tag="VE223_04680"
     CDS             3954..4550
                     /locus_tag="VE223_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20918.1"
                     /translation="MLSNNIAWDRVGALVLIYALALGISAHAADSLGSRKTKPWGNYF
                     NKKQLWVLVILGLVVAYSIGIYYMVLYVPLLWLIAILEGFFIFTYNFELFNGYFHNDL
                     WFSIAWGVLPLLAGFIMQTNSIGIMSLAFSAIAGVISYTEIKISRPYKELKKGIVQDD
                     CRVKRLEAGLKTISLATIAFASVSIIYRVLSDHHFFDI"
     gene            4568..5062
                     /locus_tag="VE223_04685"
     CDS             4568..5062
                     /locus_tag="VE223_04685"
                     /inference="COORDINATES: protein motif:HMM:NF014054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate pyruvate-lyase family protein"
                     /protein_id="HZC20919.1"
                     /translation="MAVVSIDIEDFRSIIEIISDLEYKSNRKLHLFEKILLAETGTVE
                     QVLSILTNSEIVVKILKQKESYQLIEREVNIINKKTGKKLGYARSNIIPSNLPHEIIS
                     QIRRKDAGIGRIITTAELETFRKILKIGYNSRTKSVFRIYQIIYKGNVGFEIEEVFSR
                     FVKT"
     gene            complement(5190..5263)
                     /locus_tag="VE223_04690"
     tRNA            complement(5190..5263)
                     /locus_tag="VE223_04690"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5227..5229),aa:Ala,seq:ggc)
     gene            5366..5791
                     /locus_tag="VE223_04695"
     CDS             5366..5791
                     /locus_tag="VE223_04695"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HZC20920.1"
                     /translation="MALEQSIGAVIKYQPSTENIESSEFLLLKNKRGFWGFPQGHKEK
                     GETEIQTLMREVSEETGITYLDIQSYVGRIRYSYFKSDGMKAEKEVRFYFATTSTRKI
                     QLSAEHGGFMWVTFLDALSILDHRQLKSILVKGHRKGLY"
     gene            5869..7443
                     /locus_tag="VE223_04700"
     CDS             5869..7443
                     /locus_tag="VE223_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HZC20921.1"
                     /translation="MMAGKSIVLTADRSLMTNYRGNFLYGFIACGPYELVPEFVFDKL
                     FCPSVETDQNTGGVKVAQCGLRRIEAALLKEYKREDIFLAHPEMLHKCIGSETKVVGI
                     NVMDPLGMAPVTTTMSPEKLSYVAMKFKKMCASIIQLKKKFKFKVVVGGNGAWELAKP
                     DRMKIHGIDTVVIGEADELALDLFHDLEIGDAPELLHTFVRNIENIPMIRGPTINSLI
                     EAMRGCGRGCDFCDVNKRSKKDIPLERLQEEAKINLKYGFDSIWLQSDEMLLYGCDNR
                     NFIPNSDAIVDLWKGLKSLGANFVGTTHMTLSAVASSASLIEKLSKINEMDVSGRWLA
                     TNLGVETVAPRMVKKHLGIKAKPYQPDEWGAVVREGCKILNQNHWFPALTLIIGWPDE
                     TPDETQYTIDLIQDFREMNMRGLVAPLLYQDFSERNSMHFGNLNEAQFTLFWKCWEHN
                     LRVINDIIPIIIRNKTYGPAMKIFMAGLIKAGTWAILRYLKGLSKDLFNGQVPEDIID
                     KYSKQRSVTTSLPPRL"
     gene            complement(7445..>7787)
                     /locus_tag="VE223_04705"
     CDS             complement(7445..>7787)
                     /locus_tag="VE223_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20922.1"
                     /translation="YHMRFEVEEFSTIEDVFLYLISIAPYMKQVLPVSSYKGYVFSIV
                     PLTPLSGDVLMMVYTKNTLEPGMIEFDIATKKYKTVTAVERADKNYFIVLTPKRATVA
                     DSAITYLESKM"
BASE COUNT         2347 a         1308 c         1482 g         2650 t
ORIGIN      
        1 aagaatgctg acttcaaaaa ttatatttgc aagttcatct ctacctactg acgaaaatct
       61 aggatcctgt gtagctgcat ttatagcagc ttcgattacc gattgataca attttttttc
      121 aggaatagga aaacctatgc accctcgtag atgttcttcc ttgttcttcc ccaggtagta
      181 taaagtaaca aatactcctg cttcctgtga taactgatct tggtcaacgg ggtgaatgat
      241 agttgatttg tcaagatatt ttttgactgc ttgtcttgct agtctaacta attgttctcc
      301 atccttgtca gaaattttta tcaaccgaat ataataaaac tgaactacat ttaaaattat
      361 ttacttgttc aaactcttgt tgtaatgaga ccttgtgttc ttgttatgtt tacaggaatt
      421 cttaagtgcg gctaactgcg aaccaatttc gcctaaaatc gattatttta tctgagatta
      481 cttaattctc ttacattcgc actctatcct ctcagttgta aagaattaat agtatgtgta
      541 ggagaggagt ttaaattatt gatgagtacc catatatatt tatttttgca attcaacaac
      601 acgatttttc aaaatatttt attttaacat cgtttaatct tattccgttg taccgctatc
      661 tccaaatatg agcctcattt catcaaaagt tagtttttca ccgtttgaca tctttctcaa
      721 cgcagcctcc ttcaacatgt tccatctttc ctgattctct ttgttacgtt tggttctttc
      781 ctgtgttgct ccgtatcttg atgcacgtct ttcctcgcct tctctttgtt ttctttgcct
      841 gtgttgaatg tattgcatcc gcgactttct aaattcaatt gcattcagtt gggtctctac
      901 catttctaat tttgctccga tttctcttat cccatgaatt tcttttctcc tctcttcgta
      961 taggctttca cgcaagttta ataatgtatc aaggctcgcc ttcaatttac caatcttatt
     1021 accaaactct gatttttggt cgaaaatgct atttatttta gttttcaaaa tctcgtatct
     1081 agatgaaata ttcctataat gatcctcttt cttatgcatt atcttcaagg tatgtaattt
     1141 tgtagcaatt tcctttgatc tagaaactaa cttgcgttcc tcatcttttg ataatttctt
     1201 tgtctgaatg tcatgctcga tatgctccag ggacttggtc agatttacga tatcgtatct
     1261 ttccttacgc aactttgatg tggcagctga tcctgccttc tcatcaaaag tctttatttt
     1321 atttctagct tcaataaggc ttttcttgag ttccataaat ttagcatatt ctgcatcctt
     1381 ttgctcatta atttgtttta gtactattcg caaatcctct aatcgagttc tctcttcgtc
     1441 gatctgtatc ttagtagatt cgatcttgtt attgagctct tggattcttt gatctccgtt
     1501 tttttgctct tccagaagcg ctttcttgaa ttctgttagg gtttttagat tagaatctat
     1561 tgaattctgg ttttgcgctg ccgcgttatt attatttctt gccgcagttg tcgtagtagt
     1621 tgctgtactg ctgcttccgt tactatattg gtctcgtacc acgtcgctta gggtttgtta
     1681 gagaaccgaa aatatatttt ttcgtattca aaaatggcta tctggggtag agagacctta
     1741 tttaaggcta atgaccttcc cacatcttta tatgatatga cattgtacat ataatgaccg
     1801 tcatatggac gattttgaga aggatttccc agactttaat tggaagaata tgcctgccta
     1861 caggcatcct ctaggaaaag attgcccatg tccaaaacat gagtatattc gtgaacagat
     1921 taatatatct aagactataa gcagtaataa atgggaggct agtccggaga aaaagagaaa
     1981 aacccatgtc actcttaaat tatgtccaga tcattatagt gtctattttg atgaggtaat
     2041 tccatctatg cctttgaagt atcgactaat gacgaaaatt gcacttaaaa ttggtgcagt
     2101 ggtagttcaa aaaataccct atatgcagtc tgatcaatgc ttctattgta aatttggttc
     2161 agggggtttt gataagaaaa cacctataat tcggtaggga aaatagtgct aataaattaa
     2221 gctttctata tcctaagtta gattaatttc tatattactt tgacagttgt ggatgctgct
     2281 atatgaggtt ataggatgaa cataaagcta atattgcggc ttcattttca agttttaacg
     2341 taattgtttc tcttagaatt ctttgggccc ggatgattta gaatctgcaa gcatatttcg
     2401 aaacattgca gtctgatttg aagcaaaacc tagagaaagc atattgcgta aaataatata
     2461 caaatatgga aaatcttgcc tcatctctga tctgtatccc tcaaaaaagg ccttttctat
     2521 tgcgtagtat cgaaagcttt caaaatcaat aacacttgct aggaatgaac ctatatccat
     2581 acttctagag aagactgaat cttttctttg cataaaccct aaatccgttc tgacaactag
     2641 attatccgat gttacaagat aattctgtga cttgttatct ataaacacat atcctgcctt
     2701 atgtaacttc ccagttaaag ctcctgcttg aaaagctaat gatggtgtgc ctttgccctc
     2761 agaaaatgct ctataaagat caccgccttc tacgtattct tcaacaagtg ctgtgtctga
     2821 ataagatatt agccccggtg taggaattcc taactgtcct aaatttcttc tcatcttgta
     2881 gccttcactg cttattgtca tccttccaag taatggtggc gaagatggat gtcccagaag
     2941 tattgaaatt aaggtgtatg ctgatattaa gagatattcg tgaaagtcct tggttctttt
     3001 atttcgttta acgactactt tttgtccatt taactcttct atcgatatgt ctctttgcca
     3061 attgatgaaa tacaactatg aagactacgg tatgatgcta gtataaattt ttcaatattt
     3121 aataggacgt actctcaatc aaagatattg gagatacacc aaggatatgg taacgtcagg
     3181 aaattcttta attctgagaa tgcctctagt tatgattcta tcgtacattt tactactttt
     3241 ggtcgagatt cttcttggaa aaaacagatt ataaatatca tcactaaaca aggttcggtt
     3301 cttgatcttg cttgtggaac aggaatcctc tcttcaatgc ttacagataa tgttgtgatg
     3361 atgagggtga ttggtttgga tttagtattt gattatttgc gaattgctaa aaagaaaaga
     3421 aaaaatttcc ttcttactaa tggaacagca gaaatactgc cttataagtg cgaatgtttt
     3481 gattttgtag tatcatcata tctagcaaaa tatgtcgaca ttaaaagagt tgtagatgaa
     3541 tcctggcgta ttttaaacca tgacggtaca atagtttttc atgattttac atatccaaaa
     3601 aacattttac tgcagaattt tttgagagcc tattttgtaa ttttgaaaat gatgggttat
     3661 ctggtcaaat cgtggagggt tgttttccat gagttgtgcc aagtaataag gactagtggc
     3721 tggattgcac aaatgaagga gtcgcttgag gagagaggat ttaaaaatgt atcatgcaag
     3781 tattatacat ttgggatggc tgcaatcatc tctgcgataa aaccatgaat gaagataccc
     3841 gtttaaatga atggttcgta ccaaaatttg ggcctctcag gtttcggatt tttatagggt
     3901 tactgttcat tccatatact gggatgtgta tatcctttac aataataggt tccatgctgt
     3961 ccaataatat agcgtgggat cgagtcggag cacttgttct tatatatgca ctggcccttg
     4021 gaatatctgc tcatgcagct gatagtctag gttcacgaaa gacaaagcct tggggtaatt
     4081 actttaataa gaaacagtta tgggtattag taatattggg cctggtggtg gcctattcta
     4141 tagggattta ttatatggtg ctttatgtac cattactctg gctaatagct attctagaag
     4201 gattttttat ttttacatat aatttcgaat tattcaatgg atattttcat aatgatttgt
     4261 ggttttcaat cgcttggggt gtgttgccgc tattggctgg gtttataatg caaacaaatt
     4321 cgattggaat tatgtcatta gctttctctg ctattgcggg tgttattagc tatacagaaa
     4381 ttaagatatc tagaccttat aaggaattaa aaaaaggaat tgtacaagat gattgtcgtg
     4441 taaaaagatt ggaagccggt cttaaaacaa ttagtttggc aactatagcg tttgctagtg
     4501 tgtcaattat atatagggtc ttgtcagatc atcatttttt tgatatttga agtgtttgtg
     4561 taagataatg gctgtagttt ctatagatat agaagatttc agaagcatca tagaaataat
     4621 ttctgatctt gaatataaat cgaaccgtaa actccatttg tttgaaaaaa tcctcttagc
     4681 tgaaactgga actgtagagc aagtcttgag tatactgaca aattctgaga ttgtggtaaa
     4741 aattttgaaa caaaaagaat cctatcaatt aattgagagg gaagtaaata ttattaacaa
     4801 aaaaacaggt aaaaagctag gatatgcgag atcaaatatt attccttcta atttgcctca
     4861 tgaaataata agccagataa gacgtaagga tgcggggata gggcgcatta ttacaactgc
     4921 tgaactagag acattcagaa aaatcctcaa aataggatat aattcgagaa ctaaatcagt
     4981 ttttagaata tatcaaatta tatataaagg aaatgtaggt tttgaaatag aggaagtttt
     5041 ttcgagattt gtcaaaactt aacaataact attttcaaag tgtatttcat tctattataa
     5101 cttcaaaact gaactaacat catgggatct acctcattgt tgttctatcg cgttctatcg
     5161 aaaacccttt ttaggtctgg tagagttagt ggaccgggtg ggatttgaac ccacgacctc
     5221 agcaatgcca atgccgtatc ctaccggact agacgaccgg cccctcctac agcaatattc
     5281 caacagtttt atttagatat taatacgttt aacatggaga aacaatgtta taactatcct
     5341 atcgtttgta aagtattggt atagagtggc actggaacag tcaattggag cagtaataaa
     5401 atatcagcct tcaactgaaa atatagagtc ttccgaattt ctcctgctaa aaaataagag
     5461 aggtttctgg ggttttccac aagggcacaa agagaaggga gaaactgaaa tccagacttt
     5521 aatgagagag gtatcagaag aaacgggaat tacctattta gatattcaat cttatgttgg
     5581 aaggattcga tattcttatt ttaaatcaga tggtatgaaa gctgaaaagg aggttaggtt
     5641 ttattttgct actacgtcta ctaggaaaat tcagctctct gctgaacatg gtggattcat
     5701 gtgggtaact tttttggatg ctttgtctat acttgatcat cgacaactaa aatcaatatt
     5761 ggttaaaggt catagaaaag gtctatattg actgcttaag aatggatttt gagttcgacg
     5821 ttatagtaat agatttatac tcaggcttag acgaaataaa gacaggatat gatggctggt
     5881 aagagtatag ttttaactgc ggatcgcagt cttatgacaa attacagagg aaacttcctc
     5941 tatggcttta ttgcctgcgg gccttacgag ctcgtccctg aatttgtatt tgacaagtta
     6001 ttctgcccta gtgttgagac tgatcaaaat actggaggag tcaaggttgc ccagtgtggg
     6061 ttaagaagaa ttgaagctgc tcttttaaaa gagtataaac gtgaggatat tttccttgca
     6121 catccagaaa tgcttcacaa atgtattgga tcagaaacta aagttgtggg aattaacgta
     6181 atggatccac ttggtatggc gccagttact actacaatgt cgcctgaaaa actctcctat
     6241 gtagctatga aatttaagaa gatgtgtgca tctattattc aattaaaaaa gaaatttaaa
     6301 ttcaaagtcg tagttggcgg aaatggcgca tgggaactag caaagcctga caggatgaaa
     6361 attcatggaa ttgacaccgt tgtgatagga gaagctgatg aactcgctct tgaccttttc
     6421 catgatttag agataggtga tgctccagaa ttattgcaca cttttgttag aaatattgaa
     6481 aatattccta tgattcgtgg cccgactata aattctttga ttgaagctat gcgtggttgt
     6541 gggcgaggct gtgacttttg tgacgttaat aaacgttcga agaaggacat tccgttggag
     6601 cgattacaag aggaggctaa aattaatttg aaatatggct ttgactctat atggcttcag
     6661 tcagatgaga tgctacttta tggatgtgat aatagaaact tcattccaaa ttccgatgca
     6721 attgtggatt tatggaaagg attgaaatcc ctaggtgcaa actttgtagg aaccacacat
     6781 atgacgttat ctgctgtcgc atcttcagct agccttatcg aaaaactttc taagattaat
     6841 gaaatggatg taagcgggag gtggctagca actaatcttg gtgtagagac agtagcgcca
     6901 aggatggtca aaaaacacct aggtataaag gcaaagccct accaaccaga tgaatgggga
     6961 gcagttgtaa gagaagggtg taaaattcta aaccagaacc actggtttcc ggcactgact
     7021 ttgattattg gatggccaga tgaaacgcca gacgaaacac agtatacaat tgatcttatt
     7081 caagatttta gagaaatgaa tatgaggggt ctagttgcac cgttgcttta tcaggacttt
     7141 tcagaaagga attcgatgca ttttggaaac ctgaatgaag cacagtttac attgttttgg
     7201 aaatgctggg agcataatct tagggtcatc aatgatatca ttccaatcat tattagaaat
     7261 aagacttatg gcccagcaat gaaaatattc atggcagggt tgataaaagc aggaacatgg
     7321 gctatactgc gatatcttaa aggattgtca aaagacctct ttaatggcca agttcctgaa
     7381 gacattatag ataaatattc caaacaaaga tctgtgacta cgtcattacc accacggctc
     7441 tgatctacat tttggattcc aaatatgtaa ttgcactgtc tgctacggtt gctcttttag
     7501 gagtcaagac aatgaaataa ttcttgtctg cacgttcgac tgcggtaact gtcttatatt
     7561 tctttgtcgc aatatcgaat tctatcattc ctggttccaa tgtatttttt gtataaacca
     7621 tcattaatac gtctcctgat aagggggtta atggtactat cgaaaatacg tagcccttat
     7681 atgagctaac aggtagaact tgcttcatat aaggtgcaat agatataaga taaagaaaaa
     7741 catcttctat ggttgagaat tcttcgactt caaatctcat atgatat
//
LOCUS       DASQSJ010000237         3844 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_347097, whole genome shotgun sequence.
ACCESSION   DASQSJ010000237 DASQSJ010000000
VERSION     DASQSJ010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3844
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347097"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..2070
                     /locus_tag="VE223_04710"
     CDS             229..2070
                     /locus_tag="VE223_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20923.1"
                     /translation="MLDSNIMLINSSTNPPDLPPATTTVNDLTPSRGTKSLFSKYERV
                     SNPIVSEFISSIPDNFSDAVNRMLHICTNSAAPSPPSANDLTLNNRAKLQKFINKFHF
                     EASTMTLGVSNSITLLNDPSTKIFVSIHQPNLFAYSGIFKKIVLLQTLKSEVERKMQQ
                     RHEETIHNNSKKIVNLFLLVDHDFMDGWIRLALLPSVKHSLGRLELRLPVSNSKKWQM
                     ASNMPIPGRTVLNYWRKQITSWLRKNSTSLLHSSPSNKSYINDNFEQFWYEVELSYSK
                     AKSYSDFNSFLMSQIVNKIWGYDTLFVRLTEISSVFADGFGYLISNFSRYSDALRKAE
                     SMFLRHGINTGVSSSSYLNAPVWLHCKCGSKAPVKIYEKKRSQQQEGEVQNQIILKGT
                     CISCKRHLLMNLGNKHTLELLKDEQVLHQMSPRAIPILLLLCRDLGITCYVSGTGGSM
                     DYTVVGSIAFKELSINMPSLTLVWPSRDIYYGIGQLEALELVQLTDQSDVMPYLESLR
                     QKDAEFEGRIKPLIEERNRRVKNGESIQTILPDLFNLKEEQRKIRSLIKITLKVKNAV
                     EMSPCIVDYAVNFGVANTQIQWHKHLLDKDHSLAAPILMTTGLRTTK"
     gene            2162..3337
                     /locus_tag="VE223_04715"
     CDS             2162..3337
                     /locus_tag="VE223_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HZC20924.1"
                     /translation="MQKQKTTTIKNEEKHDGSDKTITANVLVTAAGGIIAQGIIKSLK
                     LANASDTSPVKYKIIAADLSAQAAGLYRCDSGILIPSASSSNYIDSIIDVSKEQNIDA
                     IYVGSDEELVTVVDAKERIEHETDAKVLTNPIEVIFTARDKWKTFEFLNTNNLSCAAS
                     SLPEDNEKFIQEFGFPIVVKPREGYGSKYFYVVNNRDEMKYATSKIQKVGWNPLLQEY
                     LKDDKGDRNSNSFSSTEFTTGITVDRFGKNIMSSISIQKIVKSGQTYKAFIDRFEDIR
                     RSAEKVALKLGARGAINIQAKLKGGEPKIFEINPRFSATCPMRSAAGINEPDVIFRNV
                     TLGEDIKIYEYQRLVCLRYWNEVYVQYATYENTHLTGRVGNTSNSNYNNNSFILNYF"
     gene            complement(3436..>3844)
                     /locus_tag="VE223_04720"
     CDS             complement(3436..>3844)
                     /locus_tag="VE223_04720"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HZC20925.1"
                     /translation="PDEIIFNRKFTTLIDQIIRKYKPEAIFTQWIGDSHQDHQALTRA
                     VMAASRDSNNLFMYETTIPGGVTESAFRPQLYVDISETLEIKKNALNCFDSQKIRCGD
                     PWIGAIVGRSLFRGYQMNVKHAEVFEIIKITKW"
BASE COUNT         1346 a          682 c          709 g         1107 t
ORIGIN      
        1 aggttagaag atgatggcgt tggaagagga gagcttatag aaggtagatg aattatgtgt
       61 gtcatttcct acagattaag atagcggata agaaagccag taatcattat actcagaaga
      121 tgaacttctc gaaagataat agtgcattct tactatctta atatcttatt ctcgtgaact
      181 tatctgaact tgtacaatat tcttttgccg ataatgtaat ttatatacat gttggattcg
      241 aatatcatgt tgataaattc ctccacaaac ccacctgatc ttcctcccgc gacaacaaca
      301 gtaaacgacc tgacgcctag tagaggtacg aagtccctgt tttcaaaata tgaaagagtt
      361 agtaacccca tagtttccga attcatatca tcgataccag ataatttctc agatgccgtc
      421 aacagaatgt tgcatatatg cactaattct gctgctccta gtccgccatc agcaaacgat
      481 cttaccttaa ataacagagc taagttacag aaattcatta acaaatttca ctttgaagca
      541 tctacaatga cgcttggcgt aagtaatagc atcaccttat taaatgatcc atcaacaaag
      601 atatttgtat caatacatca acccaacctt tttgcatata gcggtatatt caaaaaaata
      661 gtcttgcttc agactcttaa aagcgaagta gaaaggaaga tgcagcaacg ccacgaagaa
      721 acaatacaca ataacagcaa aaaaattgtc aatttgtttc ttttagtaga tcatgatttt
      781 atggatgggt ggatccgact tgcgctactt cctagtgtta aacactcctt aggaagactc
      841 gaacttagat taccggttag taattcaaag aaatggcaaa tggcatctaa tatgccaata
      901 cctggacgga cggttttaaa ttactggaga aaacagataa cttcctggct aaggaagaac
      961 tctacatcat tactacattc atctccctct aataaatcct atataaatga taactttgag
     1021 cagttttggt atgaagtaga gttgtcgtat tcaaaagcaa aatcttattc agatttcaat
     1081 tcttttttga tgtcacaaat tgtaaacaaa atatggggtt atgacacttt gtttgttaga
     1141 cttaccgaaa tatcttcagt ttttgcagat ggtttcggat atttgatttc taattttagc
     1201 agatattcag atgcgttaag aaaagctgaa agtatgtttc tgcgtcacgg tataaataca
     1261 ggggtaagtt cgagttcgta tctcaatgca cctgtatggc ttcattgtaa atgtggcagt
     1321 aaggctcctg taaagatcta tgagaaaaag aggtcacaac aacaagaagg agaggtacaa
     1381 aatcagataa tacttaaggg tacatgtata tcctgcaaaa gacatcttct gatgaaccta
     1441 ggcaataagc atacattgga gcttctaaag gacgaacaag ttcttcatca gatgtctcca
     1501 cgagcaattc caatactatt attgctttgt agggaccttg ggattacatg ctatgtatct
     1561 ggtactggag gcagtatgga ttatactgta gtaggtagta tagctttcaa agaattgtcc
     1621 atcaatatgc cgtcgctaac tctagtatgg ccttctagag atatttatta cggcattggg
     1681 caattagagg cgttagaact tgttcagcta acagaccagt ctgacgttat gccgtatctt
     1741 gaatcattaa gacaaaaaga tgcggaattt gaaggtagaa taaaacctct tatagaggaa
     1801 agaaacagga gagtaaaaaa tggtgaatct atacaaacaa ttctgccaga tttgtttaat
     1861 ttaaaagaag aacaacgaaa aatccgtagc cttataaaga tcacacttaa agttaaaaat
     1921 gcagtagaaa tgagcccttg tattgtagac tacgccgtta attttggagt agccaataca
     1981 caaatacaat ggcataagca tttacttgat aaagaccata gtctagctgc accaatactc
     2041 atgactacag gactaagaac aacaaaatga ttactactgc caagaaatta aaaggaaaag
     2101 aaaataattc aaagcataga ttttgaatat aatgagtaca tgtgtgagga gtgcatagtc
     2161 tgtgcaaaaa caaaaaacta caaccataaa aaacgaagaa aaacacgatg gatccgataa
     2221 aacaatcaca gcaaacgtac tagtaactgc tgcaggaggc atcatagcac agggaataat
     2281 aaaatcctta aaactcgcaa atgcatcaga tacctctcca gtaaaataca aaattatcgc
     2341 agctgattta agtgcacagg cagcaggtct atatagatgc gacagcggca ttttgatacc
     2401 atctgcatca tcgtctaact atattgactc tatcatcgat gttagcaaag aacaaaatat
     2461 tgacgcaatt tacgtagggt ctgatgaaga attagttaca gtcgtcgatg caaaagaacg
     2521 aatagagcac gagacagatg caaaagtatt gacaaatcca atagaagtaa tattcacagc
     2581 tagagacaaa tggaagactt ttgaattctt aaacacaaat aatctttctt gtgctgcgtc
     2641 ttctttaccg gaagataacg agaaattcat tcaagagttt ggttttccta tagttgtaaa
     2701 accccgggaa ggttatggct caaagtactt ttatgtagta aacaatagag atgaaatgaa
     2761 atatgcaact tctaagattc aaaaagtagg ctggaaccct ttacttcaag agtacttgaa
     2821 ggatgataaa ggtgatcgta atagtaacag ctttagcagt acagagttca caacaggtat
     2881 tacagtagat agatttggaa aaaatataat gtcgtcaata tcaattcaaa aaatagtaaa
     2941 gagtggacaa acctataaag cttttataga tcgtttcgaa gatataagaa gatcagctga
     3001 aaaagtcgcc ctaaagttgg gtgcaagagg agccatcaat attcaggcta aacttaaagg
     3061 gggtgaacca aagatatttg aaatcaatcc ccgtttttca gctacatgtc ctatgcgttc
     3121 tgcagctgga ataaacgagc cggatgtcat attccgcaat gtcactcttg gtgaagatat
     3181 caaaatctac gaataccaaa gactagtatg tttgcgatat tggaacgagg tttatgttca
     3241 atatgctaca tatgaaaaca cacaccttac tggaagggtg ggaaatacta gcaatagcaa
     3301 ttataataat aattcattca tacttaatta tttttaatac aaggcatatg tcattattta
     3361 cggaatgtcc agagattgtc ccaacatata gccaatcaaa accagcagac aatataatat
     3421 attgtgtatc tcatactacc atttggtaat tttaattatc tcaaatacct cagcgtgttt
     3481 tacattcatt tgatatcctc tgaacaagct tcttccaact atagcaccta tccaaggatc
     3541 cccacagcga attttttgtg aatcaaagca attaagcgca ttcttcttta tctccaatgt
     3601 ttcgctaata tcgacataaa gctgaggtct gaaggcgctc tcagtgactc cgcccggaat
     3661 ggttgtttca tacataaaca aattatttga gtcacgcgat gctgccatta ctgctctagt
     3721 cagtgcctga tggtcttgat gtgagtcgcc tatccattgc gtaaaaattg cttctggctt
     3781 gtatttgcgg ataatttgat ctatcaaggt agtgaatttt cgattaaaga taatttcatc
     3841 tggc
//
LOCUS       DASQSJ010000238         2247 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_252325, whole genome shotgun sequence.
ACCESSION   DASQSJ010000238 DASQSJ010000000
VERSION     DASQSJ010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2247)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2247)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2247
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252325"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..833)
                     /locus_tag="VE223_04725"
     CDS             complement(<1..833)
                     /locus_tag="VE223_04725"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HZC20926.1"
                     /translation="MEINRNKEQTSQEELPVETVLVLQGGGSLGAYECGVYKTLVKHN
                     IKFDIVSGTSIGALNAAIIAAHSYDNVKNSVKELEHFWLELAETLIPLPEQFSLLYFT
                     DEARAILASMYSAMYGNPKAFFPRWIFSSLFNYLQPFRPLPYPLFDIAPLKETLNKYV
                     DFNNLRKPNRARLIVTSTNIQTSEPVVSDSKHTNIDTDRVIASAGFPFYGIAWTKKDN
                     EYLWDGALLSNTPLREVIDASPISDKKVYLVNIFPHYQKELPQDMFETWHRARDIIYT
                     D"
     gene            complement(924..1301)
                     /locus_tag="VE223_04730"
     CDS             complement(924..1301)
                     /locus_tag="VE223_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20927.1"
                     /translation="MIAGMPDDVSISHNENVKRYFTLLYLIGERRRIAIAMLSTFVVV
                     SFLSQLITLNHIFAQTMTINNITGANHDNATGSIVIKNIVNTTNPSVLIAKAISHIPG
                     NTTSIKSGVNQWWQYNAGSRLAP"
     gene            complement(1298..>2247)
                     /locus_tag="VE223_04735"
     CDS             complement(1298..>2247)
                     /locus_tag="VE223_04735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20928.1"
                     /translation="DIPQLHEIPGQDIKLTGQNFESHNFLAPNSNDKVITGGFSTFGM
                     PTREGQVVKGNIKCTSCIMSIKPDGSDLRLHAWGIRNPYGLVINDKGMLYADTNGAED
                     KGIRRVTNDPDTIFELNTKKRGLTFFGWPDFYGLGQPVNASIFNQSPSQNYTNQPLIM
                     NPPPVTKPSFSLGMSVAATQAAISSSNNFGSKGMLFIGEFGTIAPVTHKFHTSVNASA
                     GGVMGQLIGQKVVIADPQKKKVQDFIVLNTVVPDWRPVGIQFAPDGNSLYIASIEREE
                     VRNVTPDGVPLPSPADWPYLKTGIIWKVTRLAEGGQIQK"
BASE COUNT          640 a          437 c          405 g          765 t
ORIGIN      
        1 ttatcagtgt aaattatgtc tctggctcta tgccacgttt caaacatgtc ttgtggaagc
       61 tctttttgat aatgaggaaa aatattaacc aagtagacct ttttgtctga tataggtgat
      121 gcatctatga cttcgcgtag aggagtatta ctaagtagag caccatccca caaatattca
      181 ttatcctttt tcgtccatgc aataccatag aaaggaaaac cagcgcttgc aataacacga
      241 tctgtatcaa tattggtatg tttgctatct gatacaactg gttcgcttgt ttgtatgttt
      301 gtagaagtta caattaatct ggccctattt ggttttcgca agttgttaaa atcaacatac
      361 ttgttcagtg tttccttaag aggcgctata tcaaaaagtg gatatggcaa tggtctgaat
      421 ggttggaggt aattgaaaag actcgagaaa atccatcttg gaaagaaggc cttaggattc
      481 ccatacatag cagaatacat ggatgctaaa atggctcttg cctcatctgt gaaatacaat
      541 aatgaaaatt gttctggtaa cggtatgaga gtttctgcga gttctaacca aaaatgttca
      601 agttccttta cagaattttt tacattatcg taactatgag cagctattat tgctgcgtta
      661 agagctccaa ttgaggtacc agacacgata tcaaatttta tattgtgttt tacaagagtt
      721 ttatacactc cgcattcata tgcaccaagc gaacctccac cttgcagtac aagaactgtt
      781 tccacaggta attcttcttg acttgtttgt tctttgtttc tattgatttc cattgctatt
      841 tgctattata tcatcaattt gtttattaaa ggtgaataaa aactactact aaaaccagtc
      901 aagaggcata cctatatgac atgctatggt gctaacctgc tgccagcatt atattgccac
      961 cactgattca ctcctgactt tatgctggta gtattaccag ggatgtgcga tatggctttt
     1021 gctatcaaaa cagagggatt ggttgtgttt actatgtttt ttattactat acttcctgta
     1081 gcattatcat gattagcacc agtaatattg ttaattgtca ttgtctgtgc gaaaatatgg
     1141 tttaaagtta ttagttgact taaaaaagaa actacaacaa aagtcgacaa catggctatt
     1201 gcaatacgtc gtctttctcc tatcaaatat agcaaagtaa aatatctttt aacgttttca
     1261 ttatgtgata tggagacgtc gtctggcata ccggctatca cttctgtatt tgtcctcctt
     1321 cagctaaacg tgttaccttc catattattc cagttttcaa gtatggccaa tcagcaggtg
     1381 atggtaatgg tacaccatcg ggagtgacat ttcttacctc ctctctttct atacttgcaa
     1441 tgtaaagact attgccgtca ggagcaaatt gtattccaac aggtctccaa tcaggtacta
     1501 ctgtgttcaa tacaataaaa tcttgaactt tcttcttctg tggatcggct attactactt
     1561 tttgtcctat taactgcccc attacaccac ctgcgcttgc attcaccgac gtatgaaact
     1621 tgtgtgtgac aggggcaatt gttccaaatt cacctatgaa tagcattcct tttgatccaa
     1681 aattattact actagatatt gcggcttgcg ttgctgctac agacatgcct agcgaaaaag
     1741 aaggctttgt tactggagga ggattcataa ttaatggctg gtttgtataa ttttgtgatg
     1801 gcgactgatt aaatatagaa gcattaacag gctgtcctag cccatagaaa tcaggccagc
     1861 caaaaaatgt taagccacgt ttctttgtat ttaattcaaa aatggtatca ggatcatttg
     1921 ttacgcgtct gattccttta tcttcggccc cattagtatc tgcataaagc atacctttgt
     1981 catttatcac aagcccatat ggatttctta ttccccatgc atgcagccta agatcagagc
     2041 catccggctt tatactcata atacaactgg tacattttat attacctttg actacctgcc
     2101 cttctcgcgt aggcataccg aatgtactaa acccgcctgt tatgacttta tcatttgaat
     2161 ttggggcaag gaaattatgt gactcaaaat tttgtcctgt aagctttatg tcttgacctg
     2221 ggatttcatg taattgtggt atatctc
//
LOCUS       DASQSJ010000239         3257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_187073, whole genome shotgun sequence.
ACCESSION   DASQSJ010000239 DASQSJ010000000
VERSION     DASQSJ010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187073"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            245..889
                     /locus_tag="VE223_04740"
     CDS             245..889
                     /locus_tag="VE223_04740"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HZC20929.1"
                     /translation="MNRGFLSWVRSNDEEIINVLEEQATNLVEATSALVEFMSNYKSD
                     GQSISKVIKDLEHRGDQITHKLYTILDKTFVTPLDPEDISRLTSAIDEVLDATEGVTN
                     RFILFKVQEPTPYMLELAKVLLSASKEVKLLVSRIRNINSANHLIDHSKAIVNYEHQA
                     DTIYRTVIAELFETNNPIEIIKLKEIYETLEGALDRCADVADVVEDIALKYGNG"
     gene            1343..>3257
                     /gene="gatE"
                     /locus_tag="VE223_04745"
     CDS             1343..>3257
                     /gene="gatE"
                     /locus_tag="VE223_04745"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatE"
                     /protein_id="HZC20930.1"
                     /translation="MVLAINPEYINVKVGFEIHQQLATENKLFCSCKCEETENYKIFF
                     NRNLRPTQSELGMYDAAALFESNKMHTIKYHAAPGSCCLVEADEEPPHEVNREALETA
                     LIVSLTLHSKVVDEIHVMRKIVIDGSNTSGFQRTMLIANGGYLDINGKKIGVQTICLE
                     EDAAKLISDNGTIREYGLDRLGVPLVEIALEPVSGKPQEIMQVARTLGRLLRASKRVA
                     RGLGSIRQDVNISVDDGNVVEVKGVQQLDQLIKVIEYEMLRQHGLILIAQKLKKNNIN
                     EVEIGERIEDVTNILSKSTSKVVKKSLADDNNKGVFKAIRVKGFFGMIGFEPYPDIRI
                     GKQLSELVRFYGLGGVFHSDELPNYGIGSEQVDAIRKKLQIVDDTDAFVIVGGQRDRV
                     ELAVDAIVQRLKMALNGVPAETRAATFDGKTTFSRPRSGSGRMYPETDIQPIPIDNTL
                     LDSLTDRIPRPWDEIIDTLAKKYRMNKKLAEQVFDSPYLSLFEEIANSTKIQPTFIAS
                     KLTEDLVNLQRQGLDTALLNENMILDAFERLNAGIVAKESIVLIFEKIMKKESKNIDQ
                     AVAALGIMPVDEQELQRIIDKILEENMSIVRSKGIASLGTLMGRSMSVLRGKIDGEKI
                     NSVLKQKLEQLLAS"
BASE COUNT         1123 a          525 c          673 g          936 t
ORIGIN      
        1 agcagttaga tggggattag gaaagcgcat tgtttatgca tggattataa caattccagc
       61 cagcgcatct attgcatctc tcagtttaat cattctaaga ctggtaacag gctcaggcta
      121 atatcatcgc taactttttt gacatattat gctttatggt aaaaattaat tagtgtcatg
      181 ccagattcta cgatagctac gttaccacat gattcaaata attagtcgat aattattcta
      241 gtatatgaac agaggttttc tatcgtgggt acgctcaaat gatgaggaaa ttattaatgt
      301 attagaagag caggctacaa atttggtaga agcaacttca gctttggttg aattcatgtc
      361 aaattacaag agtgatggcc aatctatctc taaagtgata aaagatcttg aacatagagg
      421 agatcaaatt actcataaat tatatactat tttagataaa acgtttgtaa ctccgctaga
      481 ccccgaagat atatccagac tcactagcgc tatagacgag gtcttggatg ctacagaagg
      541 agttaccaat aggtttatcc tgtttaaggt acaggagccg actccatata tgctagaact
      601 tgcaaaggta ttactttcag cttccaaaga agttaagctg ctggtaagca ggataagaaa
      661 tataaatagc gcaaatcacc taatagatca ttctaaggct atagtaaatt acgaacatca
      721 agcagacacc atatatcgta cagtcatcgc agaattattt gaaacaaata atcccatcga
      781 aataataaag ttaaaagaaa tttacgaaac tcttgaagga gcgcttgatc gctgcgctga
      841 cgttgcagat gtggttgaag atattgcctt aaaatacggt aatggatgat cagtattact
      901 attgtgttgt attgtaatat taatcatata cgatagggag aaaaaatcca aatctatgtg
      961 tatgaggggt gtcgtaatca ctttttggaa gaccgggcag ccttgaggtg ataacatggc
     1021 tattattgac cattacttgt tagtcaactc tatttcttct atctatcatt gttgtaagag
     1081 ttttattcta gagactctac aaaaatgagc aaaagaaaca aatgtttcct cttcctcata
     1141 tttacagatc attatcgtta caagaatgaa ttggcaacta aatcaactgt tatagaataa
     1201 gtttgtggtc tgaaatacgc tttgtacttt gtcttattca gctaaataat aagaatttag
     1261 atatcataat atattatgaa tatcagttaa tgttagctaa taatacgtaa ggcttaaagg
     1321 ttgtatagag catttttgga ttatggtact cgcaatcaat ccagaatata ttaatgtcaa
     1381 ggtcggtttt gaaattcatc agcagcttgc gacagaaaac aagctctttt gcagctgtaa
     1441 atgcgaagag acagaaaatt ataaaatatt ctttaatcgc aacctccggc caacacaaag
     1501 tgaacttggt atgtatgatg ctgccgctct ctttgaatcc aacaaaatgc atactataaa
     1561 gtatcacgct gctccgggct catgctgttt ggtagaggca gacgaggaac caccccacga
     1621 ggttaataga gaagcacttg aaaccgcact aatagtttcg ctcacactcc attccaaggt
     1681 tgtagatgaa atacatgtta tgcgcaaaat tgttattgat ggttctaata caagtggatt
     1741 tcagcgtaca atgttaattg caaatggtgg ctatcttgat attaatggta aaaagattgg
     1801 agtgcaaact atttgcctag aagaagatgc agccaagctg atttctgata atggcacgat
     1861 cagggaatac ggacttgata gattaggagt tccactagtt gaaattgcac ttgaaccagt
     1921 cagtggcaaa cctcaagaaa taatgcaagt tgcacgtact ttgggccggc tgttgcgagc
     1981 gagtaaaaga gttgcaagag gacttgggag cattagacaa gatgttaaca tctcagtaga
     2041 cgacggcaac gttgttgaag tgaaaggtgt gcagcaattg gatcaactaa tcaaagtaat
     2101 tgaatatgaa atgttacggc aacatggctt gattttgatt gctcaaaaac taaaaaagaa
     2161 taacattaat gaagtggaga ttggagaaag gattgaagat gtaaccaata ttttaagcaa
     2221 atccacttca aaggtagtga aaaagtcact tgctgatgac aataataaag gcgtcttcaa
     2281 ggcaatcagg gtaaaaggtt ttttcggcat gatcggcttt gaaccatatc ctgatatcag
     2341 aataggaaag caattaagtg aattagttag attttatggt ctaggtggag tatttcattc
     2401 tgatgagtta ccaaattacg gcattggaag cgagcaagtt gatgcgatta ggaagaaatt
     2461 acagatagtt gatgacactg atgccttcgt aattgtaggt ggtcagcgtg atagagtaga
     2521 acttgccgta gatgctatag ttcaaagatt aaaaatggca ttgaatggtg tacctgctga
     2581 aactcgtgca gcaacttttg atggcaaaac tacatttagc agacctagat ctggatctgg
     2641 taggatgtat ccagaaactg acatacaacc aattccaatc gataatacac tacttgactc
     2701 attaactgac agaataccac gaccctggga tgagataata gatactcttg caaagaaata
     2761 ccgcatgaac aaaaagcttg cagaacaggt ctttgattct ccatatttga gtttatttga
     2821 agaaatagcg aattctacaa aaatacaacc aacatttatt gcatctaaac ttactgaaga
     2881 tttagtcaat ctacaaagac aaggactgga tactgcgcta ttaaatgaaa atatgatttt
     2941 ggatgctttc gagaggctga atgcgggcat tgtagcaaag gaatcgatag ttctaatttt
     3001 tgaaaaaata atgaaaaaag aatctaaaaa catagatcaa gctgtcgcag cacttgggat
     3061 aatgcctgta gatgagcaag aattgcaaag gataattgac aagattttag aagaaaatat
     3121 gtcaatagtg aggtccaaag gcattgcatc ccttggcacg ttgatgggca gaagtatgtc
     3181 tgtgctccgg ggcaaaatag atggcgaaaa aatcaactcg gtattaaagc aaaagttgga
     3241 acaattgctt gcctcaa
//
LOCUS       DASQSJ010000240         3940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_371481, whole genome shotgun sequence.
ACCESSION   DASQSJ010000240 DASQSJ010000000
VERSION     DASQSJ010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371481"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            158..751
                     /locus_tag="VE223_04750"
     CDS             158..751
                     /locus_tag="VE223_04750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20931.1"
                     /translation="MKPTEFEQFLRFAEDQLSNKSDSQKIQAFTSWCKKNNTEEVILR
                     LSSEDKGGWGKNFFFLDFTTSRIIVSKKRFFRKFLDLGYVAGMAPFPYMIFSKKLKSS
                     DIRKQALINPLNILENNPTNFFISYSDIQEIVIRKGAETIVRNMLGTMITTNFLTVKT
                     TNKTYYYGLPANKNGTFEEIYYWLSIALPVNVSANYG"
     gene            886..1188
                     /locus_tag="VE223_04755"
     CDS             886..1188
                     /locus_tag="VE223_04755"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HZC20932.1"
                     /translation="MMLAPREIDKMMIWTAAQIAEGRKQRGVKLNYPETVAYIANYVV
                     EGAREGKSVADLMKSAREVLKKSDVMQGVPELIHTVQVEATFPDGTKLVTVHDPVQ"
     gene            1283..1651
                     /locus_tag="VE223_04760"
     CDS             1283..1651
                     /locus_tag="VE223_04760"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HZC20933.1"
                     /translation="MIPGEYILSSEPVICNPNRKTVRITVQNTGDRPCQVGSHTHFFE
                     VNRALDFPREKAFGYRLNIPAGTSVRFEPGDSKEVELCELGGKRVCFGFNALTMGSMN
                     NKVIKTAAIEKARRLGYKGA"
     gene            1672..3456
                     /gene="ureC"
                     /locus_tag="VE223_04765"
     CDS             1672..3456
                     /gene="ureC"
                     /locus_tag="VE223_04765"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HZC20934.1"
                     /translation="MVLKLTRKQYTDLFGATVGDKIRLGDTDLLIEVEKDLIHPGDEV
                     VFGGGKTIRDGLAQTPGVTNANGALDYVITNAVVLDPVVGIVKGDIGIKDGKIAGIGS
                     AGNPYTMDKVPSNLVISACTEATAGEHTICTPGHFDTHIHMISPQQYVDAISAGICNM
                     IGGGTGPADGTNATTCTPGVFNISRMLESVEDLPMNWGFLGKGNDSHPSLATQMEQIE
                     AGACGLKDHEDWGTTAAVLDASLRAADATDTQVAIHTDSINECAYVEDTISAIDGRTV
                     HSYHTEGAGGGHAPDIMKIAGEQFALPSSTNPTRPYTVNTIDEHLDMLMFCHHLNPAV
                     SEDVAFAESRIRAETIAAEDVLHDEGVLSMYSSDSQAMGRIGEVVIRAWQTADKMKKM
                     RGRLEEDKGEQEERELRTGRSSSEGITRDNDNFRAKRYIAKTTINPAITHGVSDYLGS
                     LEVGKYADIVMYPTGFFPAKPKMVFKGGFIAWSIMGDPNASLPTPEPVFYRPMFGAMG
                     KAVKRTCFTFTSKAAMKLGVPEKLGLEKVVLPVQNCRTVGKSDMMWNDKTPQITIDPE
                     TYEVKLDGKIATVDPAKELALAQRYFMA"
     gene            3597..>3940
                     /locus_tag="VE223_04770"
     CDS             3597..>3940
                     /locus_tag="VE223_04770"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HZC20935.1"
                     /translation="MSNPNYGVWRPMAENVEFNALESNSNAVMAVADTVRTTLGPKGL
                     DKLLIDQAMNRHVSNDGVTILLSLKAIHPVARMIVEIAERQEQLVGDGTTTAVVMAAE
                     MIKEGKRLVKELG"
BASE COUNT         1330 a          684 c          933 g          993 t
ORIGIN      
        1 gcatattcca gcgggaattg gttggtcgag gccttaatta gaaggagtta gacatcgata
       61 aactcatcat tttctttaac tgtttaaatc aggatatctt tacatataaa ctatgaacta
      121 aactatataa tcgtaataag agtggtatat atgtcatatg aagccaactg agtttgagca
      181 gttcctaagg tttgcagagg atcaattgtc taacaagtct gactcacaaa agattcaagc
      241 ttttactagt tggtgcaaaa aaaataatac agaagaagtc attcttaggc taagttctga
      301 ggataaagga ggttggggca agaacttctt ctttcttgat tttacgacat ctaggataat
      361 agtcagcaag aaaagatttt tcagaaaatt tttagacctt ggatatgtgg caggaatggc
      421 accgtttcct tatatgatct tttcaaagaa attgaaatcg tctgatataa gaaagcaggc
      481 cttaatcaac ccattaaata ttttagaaaa caacccaaca aattttttta tctcttattc
      541 agacatacaa gaaatcgtta ttcgaaaggg agcagagact attgtaagaa atatgcttgg
      601 gactatgata acaacaaatt ttctcacagt caagaccaca aacaaaacat actattatgg
      661 gcttccagcg aataaaaatg gaacatttga ggaaatatat tattggttga gcattgcgct
      721 cccagttaat gtctcggcaa attacggttg aggtttagtc gacgtcggct actttatagc
      781 cttatacgtt gcatcataga atgccaaatt tacttttata tataatttac tattttgaaa
      841 tctaaaataa ttcagccgtt tagtatactt tgaggtttat ggaaaatgat gttagctccg
      901 agagagatcg ataaaatgat gatctggaca gctgcgcaga tagctgaagg tcgaaagcaa
      961 aggggagtaa aattgaatta tcccgaaact gttgcttata ttgccaatta tgttgtagag
     1021 ggtgcacgag aaggaaagag tgtagccgac cttatgaaat cggcaaggga ggtattaaag
     1081 aaaagtgacg ttatgcaagg tgtacctgaa ttaatacata cagttcaagt cgaggcaact
     1141 tttcctgatg gcaccaaatt ggtgacggtg cacgatcccg tacaatagat aggtgacaag
     1201 caatggtagg atctagaaaa acaaaaacaa caccaaaaaa aaagtatcac gtaagcagcc
     1261 tagagtggag gttgttaaaa caatgatacc tggcgaatat atactatctt cagaaccagt
     1321 aatatgtaat cccaatagaa aaacggtcag aattactgtg caaaatactg gcgacagacc
     1381 ttgccaagtt ggttctcata cccacttctt tgaggtaaac agagcactag acttcccaag
     1441 ggaaaaagca tttggatata gactgaatat accagcagga acctcggtaa gatttgaacc
     1501 gggtgactca aaagaagtgg aattgtgcga attgggtggt aagcgtgttt gctttggatt
     1561 caatgccttg acaatgggta gtatgaataa taaagtgata aagacagctg cgattgagaa
     1621 ggccaggaga cttggctaca agggagcata ggaaaaagga ggagaataga aatggttctt
     1681 aaactaacac ggaaacaata caccgatctg tttggagcaa cggttggaga taaaattaga
     1741 ctaggagata cagacctgct gatagaggta gagaaggacc ttatacatcc tggagatgaa
     1801 gttgtttttg gtggaggaaa gacaataagg gatggattag cacaaacgcc cggtgttaca
     1861 aatgcaaatg gagcccttga ttacgtgatc acaaatgccg ttgttctcga tccggtggtg
     1921 ggaatagtca agggtgatat tggtataaag gatgggaaga tcgctggaat tgggagtgca
     1981 ggtaatccat atacaatgga taaggtacct tctaacctgg tgatttcggc ctgtactgag
     2041 gctactgctg gtgagcatac aatatgtaca cctggacatt ttgatacaca catacacatg
     2101 atatctccac aacaatacgt agacgcgatt agcgcaggca tttgcaacat gataggagga
     2161 ggaactggtc cagctgatgg taccaatgca acaacttgca ctccgggcgt ctttaacatt
     2221 agcagaatgc tggaaagtgt tgaggactta cctatgaact ggggattctt gggaaaaggc
     2281 aatgactctc atccttcact agcaacacaa atggagcaaa tagaagctgg agcatgtggg
     2341 ttgaaggacc atgaagactg gggaacaact gctgcagttt tagacgcttc tttgagagca
     2401 gcagatgcta ccgatacaca ggttgctatc catacagatt ctatcaatga atgtgcatat
     2461 gttgaggata ctataagcgc catcgatggt aggacagtac acagctacca tacagaaggt
     2521 gctggagggg gtcatgctcc tgacatcatg aaaatcgcag gagaacaatt tgctcttcca
     2581 tcctcaacaa atccaactcg accctacaca gtgaatacga tagacgaaca tctggacatg
     2641 ctgatgttct gtcaccatct taatcctgcg gtttccgaag acgttgcatt tgcggaatct
     2701 agaataagag ctgaaacgat agctgcagag gacgttttgc atgacgaagg tgtattgagt
     2761 atgtactcat ctgacagcca agcaatggga aggataggag aggtagtgat tcgtgcatgg
     2821 cagactgcag acaagatgaa gaagatgagg ggtagattag aagaagacaa aggggagcaa
     2881 gaggaaaggg aactcagaac cggtcgaagc agtagtgaag gcataacaag agataatgat
     2941 aatttcagag caaaaagata cattgcaaag acaacgataa atcctgcaat aacgcacggg
     3001 gtgtcggatt atcttggttc cctggaagtt ggtaaatacg cagatattgt catgtatcca
     3061 acaggcttct ttccagccaa acccaagatg gtattcaaag gagggttcat agcatggtca
     3121 attatgggtg atccaaatgc atcacttcct acacctgaac ccgtattcta cagaccgatg
     3181 tttggagcaa tgggaaaggc tgtaaagagg acgtgtttca catttacatc aaaggcagca
     3241 atgaaattag gtgttccaga gaaacttggg cttgagaaag tagtcttgcc agtacagaat
     3301 tgtagaactg ttggcaagtc ggatatgatg tggaatgaca aaactcctca aataacaata
     3361 gatccggaaa catatgaagt caaactggat ggtaaaattg caactgtgga tccagcaaag
     3421 gagcttgcct tggcgcaaag atactttatg gcataagata aatttaacag gagagtcagc
     3481 accagtaaca acaacagcga caacagcaac aaaactggcg gtctttacaa gactcaaggc
     3541 acatacacta caacacatat acctttattt ttacctgcaa atcatagaga tatctgatgt
     3601 caaatcccaa ttacggcgtt tggcgaccta tggcagagaa cgtagaattc aatgcactag
     3661 agtcaaattc taatgctgtt atggctgtag cagatactgt aagaacaact ctgggtccca
     3721 aaggattgga caagctctta atagatcagg ctatgaacag acatgtttca aatgatggtg
     3781 taacgatttt gctttcttta aaggcaatac atcctgttgc aaggatgatt gtcgagatag
     3841 cagagagaca agagcaatta gttggtgacg gaacaacaac cgctgtggtg atggcagcgg
     3901 aaatgataaa ggagggtaaa aggctggtaa aggagctggg
//
LOCUS       DASQSJ010000241         9115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_252462, whole genome shotgun sequence.
ACCESSION   DASQSJ010000241 DASQSJ010000000
VERSION     DASQSJ010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9115
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252462"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..761
                     /locus_tag="VE223_04775"
     CDS             198..761
                     /locus_tag="VE223_04775"
                     /inference="COORDINATES: protein motif:HMM:NF015690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HZC20936.1"
                     /translation="MKRYMVYLENQWYTPKDAVTLLKKARSLVSGSQIIVRDSRVAKH
                     HIEFDISIPDSKHVNDIISSLSSIAPISECQHIVETKMKKEEAIRRARILFNNEKYWS
                     AHEILESVWKNSLKDEKDLLNGLILIAAAFVHEEKDESDICISILKRAMQKLSKASGL
                     YFDLNVNRIKDTISKIINIGEVERFTI"
     gene            complement(1468..1562)
                     /locus_tag="VE223_04780"
     tRNA            complement(join(1468..1503,1527..1562))
                     /locus_tag="VE223_04780"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1528..1530),aa:Cys,seq:gca)
     gene            complement(1641..1865)
                     /locus_tag="VE223_04785"
     CDS             complement(1641..1865)
                     /locus_tag="VE223_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histone family protein"
                     /protein_id="HZC20937.1"
                     /translation="MSSSPELGLATMYRVIKKSGAERVSDDAADELRKVLEEIAVRIA
                     TQAVDLSIHAGRKTIKSEDIRLAAKNVLKL"
     gene            2025..2816
                     /locus_tag="VE223_04790"
     CDS             2025..2816
                     /locus_tag="VE223_04790"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HZC20938.1"
                     /translation="MQQLLFDAHIHLTDDEYSGYIQQILKNLRVLKINACSVTVDHKT
                     SLRSLELFNNSTRDVVTQFIGIHPQFAETEDVTKFIELFKYNIGSIDGIGEIGLDNTY
                     IEYNSSYQKQKEVFNAMLDLAEKTKKPVSIHSRRTLDDILETLKTYNTGNVLLHWFSG
                     SKKQLKKSMDMGLYVSYGPVLLYSDEKKVLLRNTNIDKFLVETDGPVKYSRCFKGLVS
                     LSSSFIVSIINCAADVLGKTYHETTDVIKRNSEAFLNKPMRDIKC"
     gene            complement(3342..3944)
                     /locus_tag="VE223_04795"
     CDS             complement(3342..3944)
                     /locus_tag="VE223_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HZC20939.1"
                     /translation="MTTISKSVEINTPVTEVFTYFARPEHMADQFPENMGLNIIPIEV
                     KNGFGVGTIFRISGDFDGKRLEWDCETIDYIPHRKIIAQMIEGPFKHWQITVEFEEVT
                     EEKTRTRITVDYDVPMGPLGGLLDKVKLKKIAERGIENGLYRVKALLEGTGSIPVYIT
                     LDAYRQILKEKAKLNCSVSDVIVRFIKEKGEQQTATEILQ"
     gene            complement(4159..5100)
                     /locus_tag="VE223_04800"
     CDS             complement(4159..5100)
                     /locus_tag="VE223_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HZC20940.1"
                     /translation="MTPRKIVFGENAAKKFEYPKNSLVITTTTPDIYNKWLDYMEIKN
                     YEIYDKVTPDPAVETVEAIRQEYEGKKNISAYIGLGGGSSMDVCKYLGKITGIPKILI
                     PTTFGTGAEMTTYAVISFEHKKKLLQDEAFLADAAIVDPYFLPGTPFNIMRNSACDAC
                     AQASEGYDSKLGNPFTKLFCREAFDILEDAIINDKPSLLPYGAMLSGIGFGNSSTTLG
                     HALSYVFSNEGIPHGYSLSSCTTVAHKFNRSIYYERFKKICQKLKFDPLKLKQPLDQA
                     ADVIMPDRGHLDNNPIPVTKQDVIKCLDEIVNQNPLA"
     gene            complement(5317..5802)
                     /locus_tag="VE223_04805"
     CDS             complement(5317..5802)
                     /locus_tag="VE223_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HZC20941.1"
                     /translation="MFLKILSFATLVSLFCLMFIGGYVSASGVGLTCPRWPLCPAGFV
                     PMNEFIIEYFHRSVAAATALLVLVTMFFVLKSRITPKGMKIASIIASGAAVGQITLGA
                     MVIFERLHAVLVTVHLGLGLVLFSMVLLVVLYSYQLSASRKRQSKTSPSSLQPSTTAD
                     S"
     gene            complement(5873..6808)
                     /locus_tag="VE223_04810"
     CDS             complement(5873..6808)
                     /locus_tag="VE223_04810"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HZC20942.1"
                     /translation="MTTQDENPIIKTTTRRMAKGLAIIVIVMAVGAAIGVPNWHNFAK
                     NPPIVSTITTKAASAGGGASSTSATQSSTPAAAPPAGATSITILAGASTQGNPNFDPA
                     AGKVPLGSKVVWQNKDNTIHTATSGTGASDPNSGKIFDTKFITAGSSSTPQELKGVKV
                     GDVVQYYCQIHPYMTAKFTITAAASKGSSGSSAPAGGASSTTTTAATTTTAASGPILS
                     IPAGASTQGNPSYDPNPMTVKKGDTIQVQNKDQTPHTVTSGKGLDDPAKGKLFDTSII
                     APGASAKVTTASLNSGQYPFHCEVHPYMTGTLKVQ"
     gene            complement(6777..8300)
                     /locus_tag="VE223_04815"
     CDS             complement(6777..8300)
                     /locus_tag="VE223_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HZC20943.1"
                     /translation="MVLEVRKPRPMWEILFSTHHTDIGLLYIITSMTFLMMGGALALA
                     IRAELFLPGQQIFPSPNDFERFFTVHGTTMLLLWVIPFGAGVGNYLIPIMVRYKDMAW
                     PKLNAVAYWMIPVAAALIWLGFSDTGWTAYPPYSIIRAPGPATDMWIFGMKILGISSI
                     LGAINFVVTILKMKHPDLPLMKVSLFAWATLTTSFMVIVSMPTFSAAMIMMYTDRLGI
                     SGFFNPAMGGDPIAYQHLFWFTFHPEVYIFLIPAVGMAYELIPKFSRKPIFSYQSGVV
                     ALILLCTIGFASWAHHMFATGMSFTEKTVFMVGTLAAVPASSMHVFNWIATMWGGRIK
                     FAAPMLFTVGGIMLFFAAGAGGVVNTAMPLDFITHDSYFVVGHFHLLLMGTVSLIFTG
                     FIYYLFPLITGRMYNEKAAKIHFILAFIGIILVFGTQHILGLYGQPRRTFDYLPIPEL
                     IIMNQIATVGAWIVGPSYLLFVVNLVKSAGSGKPANMSDPFNVGEEYYDYARREPHH"
     gene            complement(8546..>9115)
                     /locus_tag="VE223_04820"
     CDS             complement(8546..>9115)
                     /locus_tag="VE223_04820"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HZC20944.1"
                     /translation="HSFNIPDFTILMDAVPGRVNTVWNMFDKPGEYLIQCREYCGLLH
                     YNMRANLFVEPATAKGYDYKPTNQSTVSTSAGASGTSPTTTAATAASGPTLTIPAGAS
                     TQGNPSYDPNPMTVKKGDTIQVQNKDQTPHTVTSGKGLDDPAKGKLFDTSIIAPGASA
                     KVTTASLNSGEIPFHCEVHPYMTGTLKVQ"
BASE COUNT         2817 a         1757 c         1715 g         2826 t
ORIGIN      
        1 gcttctttta caagcccctc taattgtttt ctatcatgaa ttgacaaggt caacttttca
       61 ctccccaatt tccagatccg tagcttttac acacattatt gcaattatta tatatgctat
      121 tgcagcgtca taataagtta atctaatggc aaatgacacc tgtttttata ttttgaatat
      181 taaggtatta taattatatg aagagatata tggtatatct agagaatcaa tggtatactc
      241 caaaagatgc cgtaacattg ttaaaaaaag ctagatctct agtctcaggt tcccaaatta
      301 tagtaagaga tagcagagtt gcgaagcatc atattgaatt tgatatcagt attccagata
      361 gtaaacatgt taatgacatt attagttcac tatcatctat tgcaccgata tctgaatgtc
      421 aacacatagt cgaaacaaaa atgaaaaaag aggaggcaat aagacgtgcg agaatattat
      481 ttaataatga aaagtattgg agtgctcacg agattctcga atctgtttgg aaaaattctc
      541 ttaaagatga gaaagatcta ctaaatggtc ttatcttaat tgcagcagca tttgtacatg
      601 aagaaaaaga tgagtcagac atttgcattt ctattttaaa acgagcgatg cagaaattgt
      661 caaaggctag tggtctttat tttgatttaa acgtaaatag aattaaagac acgatatcaa
      721 agataattaa tataggtgag gtggaacgat ttaccattta aatagtttcc gatatagaaa
      781 tcttttattt ccaagaataa aaagtttcat ggtgtcaaaa aataagtaag cctctataaa
      841 gttaggcgtt tgcagtaaaa gaatttcttt aatatttatc gtttttcaac cttcttcttc
      901 taagaaatat ggccatcacc acgagtacaa ctaaaatgga taacattatg aaaaatgtac
      961 tttcgtctct gacggatccc ttcggaagga ttaaaatagc aattagtaaa aatattgtac
     1021 tttgcagtac gtacacagta aatgtgtcaa tgtcgtagta tttgggattt gctagtaagg
     1081 tttcggattg caaataagct gctcttttat aatctgcaat gacataagag ataatgattc
     1141 ttttgtacta tgtagctaat ttctccgaaa atggacacca ttcgcctctc ttatcatttt
     1201 gaacattatc cagtactaat ataataccgt gataatgcta gacagccgat attctctaat
     1261 ttgtatatga ataatacatc agaaatctga aaatgtgttt ttttataata gattgataac
     1321 ctacaactat agtaactttt catccagtta cgaacacttt cttgttcaaa accgactttt
     1381 cataataatg tactacaatg atgccttttg cattacgttt ctaatcatat gaccaaagga
     1441 tgttatacaa caatggtcaa actttagagg tggggaaggg atttgaaccc ttataaattc
     1501 gctatctact caattccatt gcttctctgc aggcgaacgc atagccactc tgccacccca
     1561 ccaccaatgc ttgtaatcta ttggataagg cctgttagtc gtaatcaaga atgctattat
     1621 tatatcattt gttaatgata tcaaagcttc aatacattct tggccgcaag tcgaatatcc
     1681 tccgatttta ttgtttttct tcctgcgtga atcgataaat ctactgcttg tgtggcaatc
     1741 ctgaccgcga tctcttctag aacttttcga agttcatcgg ctgcatcatc gctaactctc
     1801 tctgcccctg atttctttat tactcgatac atcgtggcaa ggccaagctc tggacttgat
     1861 gacatattac aaggaaaaga atctactcat attaaaagga tatttgtgga taaattatat
     1921 taagggcttt agatgctctg attacctagt cgaataacgc aagcgcgatc atgctgtctt
     1981 aacaagattt attttacaag atatccaata gatataatat atagttgcag caactcttat
     2041 ttgatgcaca cattcattta actgacgatg aatattctgg ctatatacag caaattctca
     2101 agaatttaag agtattaaag attaatgcat gttctgttac agtggatcac aagacatctc
     2161 ttagaagtct agagcttttc aacaattcaa cccgtgatgt agtgacacaa tttatcggaa
     2221 tacacccgca atttgctgaa acagaagacg ttactaaatt tatcgaactt ttcaagtaca
     2281 atatcggatc gattgatggt attggggaaa ttggtcttga taatacatac attgaatata
     2341 atagttcgta tcaaaagcag aaagaagttt ttaacgctat gctagatctt gctgaaaaaa
     2401 ctaaaaagcc agtgtcgata cactctagaa gaaccctaga tgacatattg gaaacattga
     2461 agacatataa taccggaaac gtactattgc attggtttag tgggagcaag aaacaattaa
     2521 aaaaatcaat ggatatgggg ctatatgttt cctatggtcc tgttttgctc tattccgatg
     2581 agaaaaaggt actattgagg aatacgaaca tagacaaatt ccttgtagaa actgatgggc
     2641 ccgtaaaata ttctagatgt tttaaggggc tcgtatcatt gtcaagctct tttatagtaa
     2701 gtatcataaa ttgtgctgct gatgtgcttg ggaagacgta tcatgaaacg acagatgtca
     2761 ttaagcgaaa ttcagaagca ttcttgaaca agcctatgcg agacataaaa tgctagtgag
     2821 agtaggatta attaaattgt aaatgaaata ttgcatttgc aatataaaaa attgtctgat
     2881 attgtagaag atagtattgt catttcataa aaagtgacaa tttaaagacg gtcctaagat
     2941 aaatataagg acagataaat atactcattt tccacaaaac ttcacagaca aacttgcctg
     3001 cctaaccttg ggtagtacca ttcatattat ccggctcaac aatagttccc ataaagaata
     3061 cattttgttt ctaaaaatga aagactcact acacgagatt gttctgcggc gccggtagat
     3121 agaaaataag cctagcgatt ttgacctgtt tgtatttgtc gtgtaagaca tttttatcaa
     3181 aggttttatc attggaccat tcagagaaag aaattttagg gtagcctaat atctgaaata
     3241 tctcgactct cgtaacagtt gtcacacaca gctatcgaca acggcttagt ttccgactat
     3301 agccccctga acacagggaa acattggacg aataccttcc tttattgtag aatttcagtt
     3361 gctgtttgct gttctccttt ttctttaata aaccgaacta taacatcaga aacagagcag
     3421 ttcagttttg ctttctcttt aagaatttgt ctgtaggcat ccagcgtaat atatacgggt
     3481 atagagccgg taccttctag caaggccttt actctataca gaccgttttc tattcctctt
     3541 tccgcgatct tctttagctt tactttgtcc agtaatcccc caagtggacc catgggcaca
     3601 tcataatcta ctgtaatcct tgtccgcgtc ttttcctccg taacctcctc gaattctaca
     3661 gtaatttgcc agtgcttgaa aggcccttcg atcatttgtg caatgatttt acgatgtggt
     3721 atatagtcaa ttgtctcgca atcccattct aatctcttac catcaaaatc accactaatt
     3781 ctaaaaatag taccaacacc aaagccgttt tttacttcta taggaatgat gttcaaaccc
     3841 atattttctg ggaattgatc ggccatatgt tcaggtctag caaaataggt gaacacctca
     3901 gtgacaggag tattaatttc gacacttttg ctaatagtag tcataatcct gtaagtaaag
     3961 tcggtaaact gaatttaaag gtttcttgga gatatttatt ctcatagcaa aagcacgatg
     4021 ctattcatgt atacttaaaa gcagtgttga ctgatctctg atctagtata tatactgaca
     4081 gatagcaatg ccttgttata gtagttacct atgcagatga tgatttgctg taacaacaaa
     4141 tgagaaattt acgatatttc aggccaaagg attttgattt acaatctcat ccagacactt
     4201 aataacatcc tgttttgtaa caggaatagg attattgtca aggtgtcccc gatctggcat
     4261 tataacatct gctgcctgat ctaacggttg cttgagtttt agtggatcga atttcaattt
     4321 ttgacaaatc ttcttaaacc gttcataata tatagacctg ttaaatttat gcgcaactgt
     4381 agtacatgag gacaaagaat atccatgtgg tattccttca tttgaaaata catatgataa
     4441 ggcatgacct aacgttgtcg atgaattacc aaaccctatc ccagagagca ttgcaccata
     4501 aggtagcaaa ctaggtttgt cattgataat ggcgtcttct aaaatatcaa aagcttccct
     4561 acaaaatagt ttcgtaaatg gattaccaag cttgctatca taaccctccg atgcttgagc
     4621 acatgcatcg catgcagaat ttctcattat attaaatggt gttcctggca agaagtatgg
     4681 atcaacaatt gctgcatctg ccaagaatgc ctcatcctgt aacagctttt tcttgtgttc
     4741 gaaacttatg acggcgtaag ttgtcatttc cgcgccagtt ccaaatgtgg ttgggattag
     4801 aatcttggga atacctgtga ttttaccaag atacttgcac acgtccattg agcttcctcc
     4861 tccaagtcca atatatgcag aaatattttt cttgccttca tactcttgcc ttattgcctc
     4921 aaccgtttct actgcaggat ctggagtgac cttgtcataa atttcatagt tctttatttc
     4981 catataatct aaccatttat tataaatatc aggagtagtc gttgtaataa ctaatgaatt
     5041 cttgggatat tcaaacttct ttgcagcatt ttcgccgaag actatttttc ttggcgtcat
     5101 tactttccac ataagaactg aagttgtgtt ttggggtttt atgttttact actacggctt
     5161 tatcaagaca acacgctcaa gtcaatattt agtacgcagc gttaatgatt gactctaatg
     5221 cagatattgt ttttttatgt ttttgcgcct ttgcatagcc tagactataa ggctattcct
     5281 agcatcataa ttctgattaa atgatcatca tcgaaactag gagtcggcag tagtagatgg
     5341 ctgtaatgat gaaggtgacg ttttagattg tctcttccta ctggctgata gctggtacga
     5401 atacaaaaca actaataata ccatgctaaa taacacaaga ccaagtccaa gatgaactgt
     5461 gaccaaaacc gcatgtaatc gttcgaatat taccatggct ccgagtgtta tttgccctac
     5521 tgcagcgcca ctggcaatta ttgaagcgat tttcatccct tttggtgtaa ttctagattt
     5581 caatacaaaa aacatagtaa caagcactaa taatgcagtt gcagcagcaa cggatctatg
     5641 aaaatattcg ataataaatt cattcattgg tacgaatcca gcaggacata gaggccacct
     5701 ggggcatgtt aaacctactc cagaggcact aacatatcct ccaataaaca taagacaaaa
     5761 gagagagaca agggtagcaa aagaaagtat tttaaggaac attttttgac tattgctcca
     5821 ttggtgatat tgttaacctg tgtatattaa agaaaaggac attctacctc tactactgta
     5881 cttttagtgt tcctgtcata tatggatgga cttcacagtg gaagggatat tgaccagaat
     5941 ttaggcttgc agtagtaact ttagctgaag ctccgggagc aataatgctt gtatcaaaca
     6001 attttccctt agctggatca tctagtccct ttccactagt aactgtatgc ggggtctgat
     6061 ctttgttttg tacttgtatg gtatcaccct tctttacagt catagggttg ggatcataag
     6121 atggatttcc ttgagtggaa gcgcctgctg gaatagacag aatgggtcca gaagctgcag
     6181 tagtagtagt agcagctgtt gttgttgtcg aacttgcgcc gccagcaggt gcacttgaac
     6241 cagagctacc tttagaagca gcagcggtta ttgtaaactt tgcagtcatg taaggatgga
     6301 tttggcaata atattgcact acatcgccta cctttacacc tttaagttct tgtggtgtgg
     6361 aagatgatcc tgcagtgatg aattttgtgt caaatatctt gcccgaattt ggatcggaag
     6421 caccagttcc agatgtggcc gtatgaatag tattgtcttt attctgccat actactttgc
     6481 tgccaagagg taccttgcca gctgctgggt caaaattggg atttccttgg gtagaggcac
     6541 ctgccaagat agttatggaa gtggcgcctg ctgggggtgc agcagcaggt gttgagcttt
     6601 gagtggcaga tgtacttgaa gcaccgccac cggcacttgc tgctttagtc gtgatagtgg
     6661 atacaatagg agggttcttt gcaaaattat gccaattagg aacacctatg gcagcgccta
     6721 cagccatcac aataacaatg atggcaaggc cttttgccat tcgccgtgta gttgtcttaa
     6781 tgatggggtt ctcgtcttgc gtagtcatag tattcctctc caacattaaa tggatcgctc
     6841 atgtttgcgg gtttaccact gcctgcactt tttaccaagt tcacaacaaa gagcaagtat
     6901 gaaggcccga ctatccacgc acctactgtt gctatctgat tcattataat tagttcagga
     6961 ataggcaaat agtcaaacgt ccttcttggc tgtccataca atcctaatat gtgctgcgtg
     7021 ccaaatacca atattatccc aatgaacgcc agtataaagt gaattttcgc ggctttttca
     7081 ttgtacatcc ttcctgtaat cagtgggaac aggtaataga tgaaccctgt gaaaatcaat
     7141 gaaacagtcc ccattaacaa caggtggaag tgtccgacca caaagtagct atcatgtgtg
     7201 atgaagtcca aaggcattgc tgtgttcact acaccgcctg cacctgctgc aaaaaagagc
     7261 atgataccac caactgtaaa tagcatgggt gcagcaaatt tgatcctacc accccacatc
     7321 gttgcaatcc agttgaatac atgcattgat gaagcaggta ctgcagctag tgtccctacc
     7381 ataaatacag tcttttcagt aaagctcatt ccggttgcaa acatgtgatg agcccatgat
     7441 gcaaaaccaa tggtacataa caagatgaga gccactactc ctgactggta gctgaagatt
     7501 ggctttctag agaactttgg tataagctca tacgccatac ctactgcggg tatcaagaat
     7561 atgtacactt caggatggaa cgtaaaccag aacaagtgtt gatatgcaat tggatctcca
     7621 cccatagcag gattgaagaa acccgaaatc cccaatctat cagtatacat cataatcatt
     7681 gcagccgaga atgtgggcat tgaaacaatt accataaacg acgtcgttaa tgtagcccat
     7741 gcaaatagag acactttcat taatggtaaa tcaggatgct tcatcttgag aatagtaact
     7801 acaaagttaa ttgcgccaag tattgacgaa atccccaata ttttcatacc aaagatccac
     7861 atatcagtag caggtcctgg agctctaata atagaatatg gaggataagc agtccagcca
     7921 gtatctgaga accccaacca tattagcgct gctgctacag ggatcatcca gtatgctact
     7981 gcattcaact ttggccaagc catatctttg tatcgaacca taattggaat aagataattc
     8041 cccacaccag ccccaaaagg aattacccat aacaagagca ttgtggtccc atgtactgtg
     8101 aagaatcgct caaaatcgtt aggactagga aatatctgct gaccgggtaa gaagagctct
     8161 gcacgtatag caagagctaa tgcaccaccc atcatcagaa atgtcatcga tgttattatg
     8221 taaagcaggc ctatgtcagt atgatgtgtt gaaaaaagaa tctcccacat cgggcgcggt
     8281 tttctaactt ctaataccaa tacacatatc cacctatttt gctaagacta tgagttgtaa
     8341 ttcaataaaa gcattttgtt tttacactat aaaatgaaac attcctttag ttttgagtca
     8401 tagcaaaaat acacaaaggt attcatttca cacaaaacag gctaaaaaga gagaacaatt
     8461 ttttgatgtt tatgagcgcg tgtttatgga cttatgagca cggactgtgt atagtaggtc
     8521 attccgctac ccttgtcttc ctctgctatt gtacttttaa tgttcctgtc atatacggat
     8581 ggacctcgca gtggaaggga atttcaccag aatttaggct agcagtagta actttagctg
     8641 aagctcctgg agcaataatg ctcgtatcaa acaattttcc ctttgctgga tcatctaatc
     8701 cctttccact agtaactgta tgcggggtct gatctttgtt ttgtacttgt atagtatcac
     8761 ccttctttac agtcataggg ttgggatcat aagatggatt tccttgagta gaggcgcctg
     8821 ctggaatagt cagagtaggt ccagaagctg cagtagcagc tgttgttgtt ggacttgtgc
     8881 cgctagcacc agcagaagta gagacggttg attgattagt aggcttgtaa tcatagcctt
     8941 ttgctgttgc tggttcaaca aacaggttcg ctctcatgtt gtagtgaaga aggccgcaat
     9001 attctctaca ctgaattaaa tattctccag gcttatcaaa catgttccat actgtgttaa
     9061 ctctgcctgg gactgcatcc attagtatag taaagtcagg aatattaaat gagtg
//
LOCUS       DASQSJ010000242         4381 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_466775, whole genome shotgun sequence.
ACCESSION   DASQSJ010000242 DASQSJ010000000
VERSION     DASQSJ010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466775"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            495..785
                     /locus_tag="VE223_04825"
     CDS             495..785
                     /locus_tag="VE223_04825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HZC20945.1"
                     /translation="MEIFHHNKNICDQCGQKFKSYEDLIDHARHMHHHPIVKCHDCGK
                     EFIHEKDRLHHVREEHEKKMDQRSHKWERAHDKKTSPQEQVDDYTHNFGDNF"
     gene            complement(1232..2245)
                     /locus_tag="VE223_04830"
     CDS             complement(1232..2245)
                     /locus_tag="VE223_04830"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZC20946.1"
                     /translation="MGQNLNTKVLIAITISTIVVLLVFPLSEFWPIIVSGQFPYLPSQ
                     PEHPRSSSLSEGNKRTTFNDTGLDDNNNKVAIITFGDAWKSQSTTAKPILDKYGFKAN
                     FFVPCNYPDKKKTAMTWQDIAGLQNDRMEIDSKGMNDILLTNLPAVALEFEVGQSKQC
                     LLNHGIDAIAFATPHGEGSNNATVVNAIAKYYDLAINGFSNLMFLHCDGWKQNSTQTD
                     CRTFDDAGNVTYANRYVIREWSHNVRDRTYSHNETKIFQIFVQEVNNQTKYNHNGVIN
                     AIPILAYHKIDNLRTSQSTNIQLFDAEMKYLHDNGFRVITLSDLGYNKNNNSFYVKTI
                     GRN"
     gene            complement(2570..3595)
                     /locus_tag="VE223_04835"
     CDS             complement(2570..3595)
                     /locus_tag="VE223_04835"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HZC20947.1"
                     /translation="MLAHKSWVVFVYAFAISIESIIIEYLTTSFLKFSPIMLSATSIT
                     LAGIMLLIVAAFFFKRNKQIPLLFTRSWKFLILASSSLSLGIFTWYDSINRIGASKEA
                     LVAGPIEIVIIVLLARIFLNERLNRFQIIGISIGLVGFFMALTSDVDIVAGNNNTIKT
                     TFTSVFSLLSIVSFGDIEAILSALGFAIGVLFLSKLILNYSSIEVAGASMFTSGLLLA
                     GILVVGLFFYNTVHLISSPHELSLTRQPSLIVIVVILILFSLIPFIGSLSYSSGLGRI
                     GASLTATIGSSSILITMVIQIMFREIGFASHLPQNIYLALLGGITGFLGIYLIHMPDP
                     LLSRKTK"
BASE COUNT         1410 a          767 c          815 g         1389 t
ORIGIN      
        1 tacaagaatc agaacaaaag cattcgtgag attgcaaaag tagcaaaaat gtcatttcga
       61 gatattggct ttattctaaa aaaaacatag actaaatcat ggaattacaa caacagctgt
      121 tcttgttttg gaatatagaa tactatgcta taatgagtgt aaatcttgtg ggaacagaac
      181 acaatttgca tgcataaaat gtggctattg ctacagttgc cattggaaga aagagagatt
      241 agagaaagct cgattgcaac cctcagtaat ggctaactct gcatttggga actattcaaa
      301 atcagctggg ccttgtcgtc tattctgaca tccttatgta gatcacatgc ttttagaacc
      361 cattctgtta ctgcaggaac tgaacgctct tttatatcct taatacaata acaattccag
      421 ttccggttca atagaagaac acacaagagg ttattctcga aattctttta acagatgtca
      481 tatacaacca tataatggag atatttcatc acaataaaaa tatctgtgat caatgtgggc
      541 aaaagttcaa aagttatgaa gatttgatag atcatgccag acacatgcat catcacccta
      601 tcgtaaaatg tcatgattgt ggcaaagaat tcatccacga gaaggacaga ttgcatcatg
      661 tgagagagga acatgagaag aagatggacc agagaagtca taaatgggag cgtgcgcatg
      721 acaaaaagac gagcccgcaa gagcaggtcg atgattatac acacaacttt ggtgataatt
      781 tttgaaatgt ttgtgggttc agaattttgt atatgctata aagagatatg atttgctctt
      841 gattcctgtg cttaccatat aaccatcaag acataaaacc aatgatgtgc ttaatcttgt
      901 aaaatgagag cgactccgac gattgcaatg cagagtctaa tcgaattaat tggagctgta
      961 gaactgtgag cacaacgtag aaaaatgacc ctcatttcta taatgtcaat accaatatgt
     1021 ttctgtaata ctttgacatt ggacttcgga atcatcaaga tagcacagaa gtctttgtct
     1081 acaaaggtat taatttcaaa ttcgagggtg atgtgtattt tactacttga tggcataata
     1141 ttggcataaa tctcagattt gtcgttaatt cgagatttga gtactaattt tattattaaa
     1201 ttagccactg ttgtagattg agggtaggct gctaatttct tcctattgtt ttaacgtaga
     1261 aagaattatt atttttatta tatccgaggt cagacaaagt tattactcta aaaccattat
     1321 catgtaaata tttcatttct gcatcaaaaa gctggatatt agtactctgg gacgttcgaa
     1381 ggttatctat tttgtggtat gccaatatag gtatggcgtt tattacgcca ttatgattgt
     1441 acttagtttg attattgacc tcttgtacaa atatttgaaa tattttagtc tcattatgtg
     1501 agtaggttct gtcgcgtaca ttatggctcc attctctgat tacatatctg tttgcatatg
     1561 tgacgttgcc tgcatcatcg aatgtcctac agtctgtttg agtagaattc tgcttccatc
     1621 catcgcaatg cagaaacatc agatttgaaa aaccatttat ggctaggtca taatatttcg
     1681 caattgcatt tacaacagtg gcattattag atccttcgcc atggggggta gcaaaagcaa
     1741 tggcatcaat accatggttt aaaagacact gctttgactg gcctacttca aactctaatg
     1801 caacagcagg taaattagta agaagtatat cattcatgcc tttggagtct atctccatcc
     1861 tgtcattttg caatcctgct atatcttgcc aagtcattgc agtttttttc ttatctggat
     1921 aattgcatgg aacaaagaaa ttagccttga atccatattt gtccaaaatt ggcttggctg
     1981 ttgtggattg gctcttccat gcatcaccaa atgttataat tgctacttta ttattattat
     2041 catctagacc tgtatcgtta aaagtggttc ttttgtttcc ttctgatagt gatgacgatc
     2101 tgggatgttc tggttgacta ggaagatatg gaaactgacc agagactatg attggccaga
     2161 attccgatag aggaaatact aataatacaa caatcgtgga aatggtaatt gctattaaaa
     2221 cttttgtatt gagattctgt cccattagaa aatattcatt gaaaaattta gatatgacct
     2281 ataaatattt ttagtgctct gattaatgtt ctacacatat actctaagga aaatgacgca
     2341 tttcagctag cctaaacaac tcacttattg aaggcaggtt atgtctgtac aactcgatta
     2401 gtttgctacg cgcctctata aattgttcat cctcaacatc cctatctatc atattcatgt
     2461 acgtctgttt agccagccaa acgtcatgga aaattctact ctggcttaaa tcgaaggatc
     2521 tgcacagaaa tagggcgaat tacatgatat tcaccttgtg gtgggtatgc tattttgttt
     2581 ttctagaaag aagaggatca ggcatatgta ttaagtatat gccgagaaat cctgtgatgc
     2641 cacctaataa agcaaggtag atattttgtg gcagatgact agcaaatcct atttctctga
     2701 acattatttg gatgaccatt gttattaaaa tgctggaaga acctatcgtt gcagtaagag
     2761 atgcgcctat tctacctagg ccgctagaat aagacaaaga tcctataaat gggattaatg
     2821 aaaatagaat caagatgaca acaataacta ttaatgatgg ctgtcgcgtc aacgaaagtt
     2881 catgtggaga cgatatcaaa tggacagtat tgtagaaaaa taacccgaca accagaatac
     2941 cagctaaaag taaacccgat gtaaacatcg atgcccctgc tacttcaata gaggaataat
     3001 ttaagatcaa tttgctaaga aagagaacac caattgcaaa acccaacgca gaaagaatcg
     3061 cttcaatatc tccaaagctg actattgata ataacgaaaa taccgatgta aaagttgtct
     3121 ttatggtatt gttattgcca gcaacaatat ctacatcgct tgtcaaagcc ataaaaaatc
     3181 ccacgagtcc gatactgata ccaataatct ggaacctatt caatctctca ttcaagaata
     3241 ttctagctag aagaactata atgactattt caatgggtcc agcaacgaga gcctcttttg
     3301 atgcgcctat ccggttaatg gaatcatacc acgtaaatat tcctagtgaa agtgatgagg
     3361 atgccaagat aaggaatttc catgatctag tgaaaagtag tggtatctgt ttgttccttt
     3421 taaagaagaa agccgccaca attaacagca ttatcccggc taacgttatg cttgtagctg
     3481 aaagcataat tggggaaaat tttaggaagg atgttgtcaa gtattcaatt atgatggatt
     3541 ctattgaaat ggcaaatgca tagacaaaaa ctacccaaga cttgtgagct aacaaacgaa
     3601 tgacactgac ggtatcattc cttataactg atggagaagc ttctcttaaa atcttggtaa
     3661 aacatgaagc ttatcagata tttcaggtag agctaagtaa gatatatcta tatctctgct
     3721 ataaaattta tctatactaa cgtctttgct tagaatggta ttgtatttgt tgtaataaat
     3781 gtctgcaata ccttgctgag tttctcagga tactgataca ttaatgcatg tcctgttcct
     3841 ttgatctgta caagccatga gccagggatt ttttgccaca ataattaagg agtttgatgc
     3901 acgtacagca aggtcttcag atacagttat gaccagtgtt ggtatagata cttttgaaag
     3961 ctgactgaaa ataccactcc agtaagttgc aaaccagtgt tgcacaatat taaactgttg
     4021 tttgaataga catcatggat ctggtgctaa tacagatcat taaccctacg gtctatcctt
     4081 catcttcttt gattacaaga ggcctaggat gttgtgaaat atactccagc cattttccat
     4141 tccttctttg aggactcaag agttagaact gagccctgca ttgctgcttc aagtttagtc
     4201 attggtagta gtaagaggga ctttatcgag tatcttttcg atgtgttgtt attttttaaa
     4261 atcgttacct tctatgtcat cttctttttt cttaaaagca aaccactctt tagaatcttt
     4321 gtaatcgtcc tttgcaagac gtgcacctaa tcctgataaa atgcctgtga taattggttg
     4381 t
//
LOCUS       DASQSJ010000243         2251 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_466972, whole genome shotgun sequence.
ACCESSION   DASQSJ010000243 DASQSJ010000000
VERSION     DASQSJ010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_466972"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..492)
                     /locus_tag="VE223_04840"
     CDS             complement(<1..492)
                     /locus_tag="VE223_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HZC20948.1"
                     /translation="MAKVEFTIPAVLNKGAGEKKVSLEASNLYDAFAKVSDSMGEDFK
                     RRIFDLNGKPRALINIYINGKNMRFSSDGMATSLSEGDSIYILPAVAGGAKLTNEDLQ
                     RYSRQIMLEEIGFTGMEKLRDSKVCVIGVGGIGNPIVTQLTAMGIGKLKIVDRDVVEI
                     SNLH"
     gene            complement(527..1750)
                     /locus_tag="VE223_04845"
     CDS             complement(527..1750)
                     /locus_tag="VE223_04845"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HZC20949.1"
                     /translation="MGSIQSLKCRECSNEYEPQFKYICEECFGPLDVIYNTSTIQKQT
                     LVSREDKTYWRYFELLPISDKRNIVNLNAGFTPLQYADRLGKEIGGLKKLYVKNDSVN
                     PTFSFKDRPAGVAVSRAKETKLKAVGCASTGNLASATAAHAAKAELPCYIFAPSDIEH
                     VKISQALSYGAEFVAVDGTYDDANRVASVIGDSKGIGIVNINMRPYYVEGSKTLAFEV
                     AEQMNWRVPDNLIIPVGSGAMLNAICKGFEELESLGFIDNVANMKIIAAQPDGCAPVV
                     DAFKRKNNDVIPVERPETIAKSLAIGDPGDGLYVLKRLKQFNGIAEDATDDQIIDGIL
                     MLAKTEGIFTEPAGGVSIAVLRKLIEDSKIDNDETVVCYITGNGLKSTEAIMDVLPKL
                     NAVKPDVQIVSAMIR"
     gene            complement(1923..>2251)
                     /gene="hisI"
                     /locus_tag="VE223_04850"
     CDS             complement(1923..>2251)
                     /gene="hisI"
                     /locus_tag="VE223_04850"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HZC20950.1"
                     /translation="QEIDFVKRNGLLPVIVQDKNTKDILMLAYANREALDYTIKTGNA
                     YFWSNSRSKLWMKGEESGNTQKVTEILVDCDSDALLYLVDSKAPACHTGKRSCFHNLL
                     ERNKLR"
BASE COUNT          645 a          491 c          353 g          762 t
ORIGIN      
        1 atgtaaattt gaaatctcca cgacatctct atcaactatt tttagtttac caattcccat
       61 tgcggtcaac tgagttacaa taggatttcc aattccgccc accccgatca cacaaacttt
      121 ggagtcgcgc agcttctcca ttccagtaaa ccctatttct tcaagcatta tctgcctgga
      181 atagcgttgt aaatcctcat tcgtaagttt cgctccccct gccaccgctg gcaatatata
      241 tatagaatcc ccctctgaaa gcgatgtagc catgccatca ctgctgaagc gcatgttttt
      301 gccattgatg taaatgttaa ttagggcacg cggtttgcca ttaaggtcaa atattctccg
      361 tttaaaatct tctcccattg agtcagaaac ttttgcaaat gcatcgtata agttgctcgc
      421 ttctaacgaa actttttttt cgcctgcgcc tttattcagg actgctggaa ttgtgaattc
      481 aacttttgcc atttatttgt tcacaccatc atacaaatat gcatggttat ctaatcattg
      541 ctgaaactat ctgaacatca ggttttacag cattaagttt aggaagtaca tccataattg
      601 cttccgtaga cttaagaccg ttgccagtga tgtaacaaac cactgtctca tcattatcaa
      661 ttttgctatc ttcaattagc tttctgagta ctgctattga gactcctcca gcaggttccg
      721 tgaagatgcc ttccgtttta gcaagcatca atatcccatc aataatttga tcatcagtag
      781 catcttctgc aattccattg aattgtttca atcttttcaa tacatataat ccgtctccgg
      841 gatcccctat tgcaaggctt ttcgcaattg tttcaggtct ttcaactgga atgacatcat
      901 tattttttcg cttgaaagca tcaaccactg gagcgcatcc atcaggttgt gcagcaataa
      961 ttttcatatt tgccacatta tcgataaacc ctaaactttc taattcttca aatcctttgc
     1021 aaattgcatt taacattgca ccgcttccaa ccggaattat taggttgtca ggaactcgcc
     1081 aattcatctg ttcagctact tcgaaagcaa gtgtctttga gccttcaaca taatatggtc
     1141 gcatgtttat attcacaatc ccaatacctt tggagtctcc aattacggaa gcaactctgt
     1201 tggcatcatc atatgttcca tccactgcaa caaattcagc gccatatgat aatgcttgtg
     1261 atatctttac gtgttcaata tcagaagggg caaaaatata gcagggtagt tctgctttcg
     1321 cagcatgagc tgctgtagct gaagcaaggt taccggtaga tgcgcaacct accgctttta
     1381 attttgtttc tttggctctt gagacagcta ctccggcagg cctatcttta aatgagaacg
     1441 tcggatttac agaatcattt ttaacataca gctttttcag tccacctatt tctttaccaa
     1501 gcctatcagc atattgcaaa ggagtaaaac ccgcattgag atttacaata ttgcgtttat
     1561 cagaaattgg gagtagttcg aaataacgcc aataggtctt gtcctctctt gatacaaggg
     1621 tttgcttttg gatagtggaa gtattataaa taacatccag tggaccaaag cattcttcac
     1681 atatatattt aaattgaggt tcgtattcat tactacattc tctacatttt aaagattgga
     1741 tactgcccat ttttgattac caactatcta tgactgtgat aaataaggtt ctctaagaac
     1801 aattttaata ttactaaatt ttttctacaa aagtacccgt atcacttgat acgatcttta
     1861 tacattataa gaattatctg gtaatcaata caatttgttt gatttgtcta aaattctaga
     1921 aattatctca atttattcct ttctaacagg ttatggaaac atgatcgttt accagtgtgg
     1981 caagctggag cctttgaatc taccaaatac aacaaagcgt cagaatcaca atcaaccaat
     2041 atctcagtaa ctttctgtgt gttcccggat tcctctcctt tcatccataa tttactacga
     2101 gaattactcc aaaaataagc attccctgtt ttaatagtat aatcaagtgc ctctctgtta
     2161 gcatatgcta gcataagaat atcttttgtg tttttatctt gaactataac aggcagtaga
     2221 ccatttcgtt ttacaaaatc aatttcttgt a
//
LOCUS       DASQSJ010000244         4986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_531128, whole genome shotgun sequence.
ACCESSION   DASQSJ010000244 DASQSJ010000000
VERSION     DASQSJ010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4986
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531128"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..304
                     /locus_tag="VE223_04855"
     CDS             56..304
                     /locus_tag="VE223_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20951.1"
                     /translation="MDIILKSILRRQAPFLIGGTITGTIMTYYYGFPFTIVVNSAIWY
                     GISYVVNKVYWKNKGLNDQKYLIQYALSKINSRKRKSK"
     gene            complement(491..1039)
                     /locus_tag="VE223_04860"
     CDS             complement(491..1039)
                     /locus_tag="VE223_04860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20952.1"
                     /translation="MGSSNKENRDDTDESSTGGEASADYIIRGAGESDRTTSSSTTTE
                     GGGITDKIKDKIKGAKDKVASTADTAADTTKKGISSSTTTNEQDREYEEGGAGTRTDR
                     KKDSTQEYDEKEPMSPAKIKQHEPTAVSRDPSDQKIAEGGQTGSSQDAAEKARRSGMT
                     KGTAGAAETGSEYEQGAAGSNK"
     gene            complement(1219..1458)
                     /locus_tag="VE223_04865"
     CDS             complement(1219..1458)
                     /locus_tag="VE223_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20953.1"
                     /translation="MSQSDIPSSQFSATTTDCPICINYKKTIITDIDSGEIGCSSCGI
                     VILDKMQETTTATTTTPTNQNGILSVPRKRTPKVE"
     gene            complement(1917..2795)
                     /locus_tag="VE223_04870"
     CDS             complement(1917..2795)
                     /locus_tag="VE223_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HZC20954.1"
                     /translation="MERILLRLAKKWAAGQDMEDALIAAKSCNMKGQKAILNYLGEDH
                     TDEDMINRTMKEYSNLLERLHADQINGCISVKPSQLGLCISYELCRKNLKAIINKSIE
                     FSLFVWIDMESSTYTDDTLMLYLELFAHHHDIGVVLQSALRRSASDLLHLMEVGAKVR
                     LVKGAYQENEQIAFVHHKEINANYIKLLEMLFSHNYENNNGFDNTLKFAIATHDFKLV
                     EYAIKLSKTAKIAIKNFEFEFLKGIRDELKRNLVEEGFSVAEYIPYGEEWLPYSVRRL
                     RERKRNLFLLARSLVQ"
     gene            complement(3149..3370)
                     /locus_tag="VE223_04875"
     CDS             complement(3149..3370)
                     /locus_tag="VE223_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20955.1"
                     /translation="MSKDNVITYCHFPLQNENIMHNLKEEIKEKILEREKVVEDHGLT
                     LELLEEYDANRSLFEGDKEQRETVVSDRS"
     gene            3499..3999
                     /locus_tag="VE223_04880"
     CDS             3499..3999
                     /locus_tag="VE223_04880"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HZC20956.1"
                     /translation="MGRKSREIIRAKADEVIGDLTKAYADEWLAHYQYWLAARWIRGL
                     DADTIRDILIEQSNDELGHAEKIAKRIIQLGGTPTMDPGKLLQTSGCGYKQPPSDPTD
                     LKQVIQDVLDAEACAIETYSKLAEKYRMTDLVTHEIFEELLEDEVGDEEEWENLAGIW
                     MHQKEQ"
     gene            complement(4376..>4986)
                     /locus_tag="VE223_04885"
     CDS             complement(4376..>4986)
                     /locus_tag="VE223_04885"
                     /inference="COORDINATES: protein motif:HMM:NF019127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HZC20957.1"
                     /translation="FAQGSNANGKATSSSSGGGLGTAAAGMSLNCQSIASTIGGIVVP
                     NPSKICDMLILRQSPIIMGPGNMNMNKFSTANSIVEVAALSDLMPKTSQGGGSGGGGS
                     SSSNNASTSGASSGSASSSMNTKRVFVMGEFALLESQLVPMVKAAVGSNWTIAAVHNH
                     MVLEKPKMIFVHWSAQGDLNTITRQIKNVLTIVSKVPSSSRQ"
BASE COUNT         1467 a          966 c          891 g         1662 t
ORIGIN      
        1 tattaataaa ctaatcaatc aatatgagta ccaagagaga aaagaataag ttaagatgga
       61 tataattcta aaatcaatat taagacgcca ggcaccgttt ttgataggtg gtactataac
      121 tggtacaatt atgacgtact attatggatt tccgtttaca atcgtggtaa atagcgctat
      181 ttggtatggc atatcatatg ttgttaacaa agtctattgg aaaaacaaag gacttaacga
      241 ccaaaaatat cttattcaat atgcattatc aaaaattaat tcgagaaaaa ggaagagtaa
      301 gtaatatctc ctctagtatc aacatacaaa acgtctagat gccaagcata tctcaaatgc
      361 catctgagat tactttacag tttagtctat tactgattgc gctatcgtca gtagatgtta
      421 ctggcttaga ttcttatcca aatactatgg actcaagtca aaaagagtta gggtgttcct
      481 gtttacttat ttatttattt gaccctgctg ctccttgttc gtattcactg ccagtctcag
      541 ctgcaccggc tgttcctttt gtcatgccac ttcttcgtgc tttttctgct gcgtcttggc
      601 tactaccagt ttgccctcct tcagcaattt tttggtcgct tgggtctcta ctgacagcag
      661 ttggctcatg ttgttttatt ttggctggag acattggttc tttctcatca tattcttgag
      721 tagaatcttt ctttctatca gtcctggtgc cagcaccacc ttcttcatat tccctgtctt
      781 gttcgttagt agtagtgcta gaagagatgc cttttttagt ggtatcagcc gctgtgtctg
      841 cggtactggc aaccttgtct ttagctcctt ttattttatc tttaatcttg tctgtaatgc
      901 cgccaccttc agttgttgtt gatgatgacg tcgttctatc actttctcct gctcctctaa
      961 taatataatc agcacttgct tctccccctg tggaagactc gtcagtatca tccctgtttt
     1021 ctttattact tgaacccata cattaccatg ttctataaga tatttaactg tctatactta
     1081 cctttgaaat gtagctaaac tagcgggctt gagtcaataa caatagcaat atattgttta
     1141 ataccagagc gtatattcaa aagtctccat aaggaacagc aagcctcgca ttgtggtgag
     1201 ctagagaaat gggaatattt attctacttt tggcgttcgt ttccttggca cagaaagtat
     1261 cccattctgg tttgttggtg ttgttgtagt tgctgtagtt gtttcttgca ttttgtctaa
     1321 aatcacgata ccgcaactac tacaaccaat ttctccagaa tcaatatctg taattatggt
     1381 ttttttataa ttaatacata taggacagtc tgtagttgta gctgaaaact gtgaagacgg
     1441 aatgtcgctt tggctcaatt ccaccttaat atttcacaat aagctttttt atggttatac
     1501 catcatccta ataatattat tcaaaaaagt atatcgtcgc acctgttgtt tcaccatcag
     1561 tgccataaat ccatttattt tattttactc tcataaagct tttacaacct ctttttccta
     1621 ctatttgttg ctagatgatt aattgaactg aaattggatg aatttcagca tgtcctcctt
     1681 ctctcacatc taatagataa gttcctgtta tcatcaaatg ttggcccact ttaggaaggg
     1741 gattaaatat ttatcgtcca tcacattcac ctcttttgta ggattcgatt tctgatgaca
     1801 tttcagatgc tggcatatca tttcacacca tgtacgcctt gcattgacga aaggctgccc
     1861 gaagagtacg aaaaataacc ttgttggtct tactataagg tgattcaaag tatttactac
     1921 tgcactagtg atctagctaa taagaataag tttctctttc tttctcttaa ccttctgacg
     1981 gaatatggaa gccattcctc accataaggg atatactctg caacactaaa tccttcttca
     2041 actaaattcc tctttaattc atccctaatg ccctttagaa attcaaactc gaaatttttt
     2101 atagcaattt tggctgtctt tgatagctta attgcatatt caactagctt gaagtcatga
     2161 gttgcgatgg caaatttaag agtattatca aatccgttat tgttctcgta attatgacta
     2221 aatagcatct ccaataactt aatgtagttt gcattaatct ccttatgatg tacaaatgca
     2281 atttgttcat tttcttgata ggctcccttg actaatctaa cttttgcacc tacttccatt
     2341 agatgtaaaa ggtcgcttgc actacgcctg agtgcagact ggaggactac tcctatgtcg
     2401 tggtgatgag caaagagttc taagtatagc attaatgtgt cgtctgtata tgtggaggac
     2461 tccatatcaa tccagacaaa taagctaaac tctattgatt tattgataat agctttcaag
     2521 tttttccgac ataactcata gctaatacat aaaccaagtt gcgaaggctt aacagatatg
     2581 catccattaa tttggtcagc gtgcagtcgc tctaatagat tagaatattc tttcattgtt
     2641 cgatttatca tatcctcgtc agtatgatcc tcgccaaggt aattcagaat tgctttttgc
     2701 cctttcatat tgcagctttt ggccgcaata agggcatctt ccatatcctg acctgccgcc
     2761 cactttttcg ccaatctcaa aagtatgcgt tccattagta aataattatt gatatgtgaa
     2821 tgcttaagtt gattatctgt attcattgaa gcatatctat agctattata agcagaagcg
     2881 agccatatac tttgttacta cattatctac caaactccaa catccactga ctaggaacaa
     2941 atgagcagag atgaccaacc ggaatgtcta agaaaaggtt cttgaaatga ggtctgtagg
     3001 tttgaatgga agttacaatg taatatgata gtagtactca attttgaatt gatgcaaaaa
     3061 ggttcagtgg tatgccttcg cgatcatttt attattggtg acaaagaaag agtcatcagt
     3121 accttgtcta ccttgtctac tctttcactc atgatctgtc tgacacaact gtctctcttt
     3181 gttctttatc tccttcaaac aacgacctat ttgcatcata ttcttcaagc aattctaaag
     3241 taagaccatg atcttctact actttttccc tttccaatat tttctctttt atttcttctt
     3301 ttaggttatg cataatattt tcattttgca gaggaaagtg acaataggta ataacattgt
     3361 cctttgacaa agattcgtgg taatatggat tataagcttc ttagaataag tacggatcaa
     3421 tacttatttc gtaatacaat aaaaatgtaa tccatataag acatagtctg tttaatagca
     3481 tattggtgat tcaactaatt gggtagaaaa agtagagaaa taataagggc taaggcggat
     3541 gaagtaattg gagatttaac taaagcctat gcggatgaat ggcttgcgca ttaccagtat
     3601 tggctagccg caaggtggat tagaggtttg gatgcagata ccataagaga tattctgatt
     3661 gaacaatcaa atgacgaatt gggccacgca gaaaaaattg caaagagaat aatacaacta
     3721 ggcggtactc caacaatgga ccccggtaag ctattacaaa catcgggctg cggatataaa
     3781 caaccaccta gcgatccaac agatctcaag caggtaattc aagatgtcct tgatgcagaa
     3841 gcatgtgcaa tagagacata tagcaaacta gcagaaaaat ataggatgac tgatttagtt
     3901 acgcacgaaa tctttgaaga gcttttggaa gacgaagttg gtgacgagga ggaatgggag
     3961 aatcttgctg gaatatggat gcatcaaaaa gaacaatagc tggcaataat ggaatacccc
     4021 gcaaatttag ggcaaaactt caccagcatt taaagttgag agaaaagcaa caggacgaga
     4081 ctctgataga tatgtcaaat tgagcatagg cccaccgcat cttggctcta gtcatatgtg
     4141 cacaccagtc atattagatg gggatatgat agcgtacgct gaaccaggtg tcggttatgt
     4201 acttagaggc gaagaaaaat gtctgaatcc agaaccctta atagttaaat agattcaaca
     4261 aaatgaatat ataaattggg agtttttagg attttgtctt tgttcaacta tcttgaaaaa
     4321 taaaggtaag atacttttca tgtaaacata ttgagggtct attagataat actttctact
     4381 gacgactgct gcttggtact ttgctaacta tcgtcaatac attctttatt tgtcttgtta
     4441 ttgtatttag atctccctga gcagaccagt gtacaaatat catctttggt ttctctagca
     4501 ccatgtggtt atgaaccgct gctatggtcc aattagatcc tactgctgct ttgaccattg
     4561 gtactaactg agactcaagt aatgcaaatt ctcccataac aaatacacgt ttagtgttca
     4621 tactgctact tgcagatcct gatgatgctc cacttgttga tgcattatta ctactgctgc
     4681 tgccaccgcc accagagcca ccgccttgac tggtcttagg catcaaatca gataatgcag
     4741 caacttcaac tatagaattt gctgttgaaa atttattcat attcatatta cccggcccca
     4801 ttattatagg agattgtctt agtatgagca tgtcacatat tttgctagga ttgggaacta
     4861 ctatgcctcc tatcgtcgaa gctatagatt gacaattcag gctcatgcct gccgctgctg
     4921 ttcctaaacc tccaccagaa gaggatgatg tggctttacc gttagcatta gatccctgag
     4981 cgaatg
//
LOCUS       DASQSJ010000245         2897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_467526, whole genome shotgun sequence.
ACCESSION   DASQSJ010000245 DASQSJ010000000
VERSION     DASQSJ010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_467526"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1385..2506
                     /locus_tag="VE223_04890"
     CDS             1385..2506
                     /locus_tag="VE223_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HZC20958.1"
                     /translation="MGIPEKIRSIEDEIHKTQINKATEYHVGLLKAKIARLKRELEEN
                     THGKTLSTGSRNAGFDVRKTGDATVVLIGLPSVGKSTLLNCLTNAKSRVASYQFTTLT
                     AVPGILDYHGARIQILDMPGIIEGAAKGKGLGKRVLSVARNADLLLIVLDVFQPHHLA
                     ILKKELSEIGIKADQKPPDVIIEKMSTGGISINIQVPVRVTENLVKEILRIYGIHNCR
                     ITIREPGLTDDQLIDVLNGNRVYVPSLIVLNKIDLVNQGFIREVQSKIGDEFVPISAD
                     ANINVDALKESIYKKLDFIRIYMRPKNQETDYKEPMIMRRGCTVGDVCNKIHRNMVKD
                     FRFANIWGRSAKYDGQKVGLDHALIDEDVLTIVKRVNAI"
BASE COUNT          938 a          485 c          523 g          951 t
ORIGIN      
        1 cacttagcat atgttctcta actaactttt gtctatcttg tgctatacta tagaaagaag
       61 agttaaataa tatttcatag aatccttgct caatctccac agaaatgagt tagttctgta
      121 tcgggtatat ggccagagcc caccataaga ttgccttagc aggtcctata cctgtacaaa
      181 tgaatgatct gtttcgggca ccatacaagt atactgttta tgatggacat agccgggctt
      241 aatatcacta ctacatcgct taactccgta actgtggaca gccttaactg tcccagagct
      301 aatctagccg aatatacaat ttattgattt taagaacttg tgacaattcg actgataatg
      361 ccttcgcgta tttagcttca tggttttgca gggcctgcag ttctctctgg aaaattaatt
      421 catcctcttc tcgcatttta aaagatattg attcaaactt gtcggtgaag taacatcgtt
      481 attactgctt tacttggaca aagatttatt catgacgtca gtgactattt tagcttcctc
      541 ttcgtcttta taagttaaaa agtaaataac cgataatcat aacaccacca taccaacttc
      601 tctttaaatt ccgagaaatg gtaatgactg ttcttaccat ataagcatca tatactcttg
      661 tctatgtatt aatgacgtct tttcaccctc tatgtttttg aatatgggag ctcgatattt
      721 atctctattt tttatacatt gttccatatc ttttctacat cggaggtaat gttctgctcg
      781 aaattgctga taagctcatc tctttcttgg ttggaacaag ttttttgttt aatataacgt
      841 attactcttt ctttttgacc cattatatat tattcatagt atatcgatat attttcaaat
      901 cttgaaggtt attcatattt ctaaaataat agctgtgatg tactttagat tattctacaa
      961 aacgccttgt taaccatttg ttaacacgtg ttaaccattt gttaacatat ccatatactg
     1021 tacaataata aacagcgaca atataccttg ttaaaagcac atactatggc taaacagata
     1081 gtggttagtg aacaactcta tacgtctttc agttactatt tggttagtta gcccttgtaa
     1141 aaaggtttgt gaatgatttg aaggtcgtgt taacttaact acctcacctc cttatgttac
     1201 taaattttat atgacatttc gtaatgctat tgtgcatagt gtagtgccta caaggatctg
     1261 cataagacag agatcgacta agatacctta catttttgct tctaattgaa ctgtatataa
     1321 agtaatagat tttctgtttt tacaagtgaa aaggtaaata tttcaactag tctaagactt
     1381 tcacatgggt attccagaga agataagaag tatcgaagat gaaattcaca agacacagat
     1441 caacaaagct actgaatacc atgttggact gctaaaagca aaaattgccc gtcttaaacg
     1501 ggagttggaa gaaaacacac atggcaaaac attgtctact ggaagcagaa acgcaggttt
     1561 tgatgttcga aagacaggcg acgctactgt cgttcttata ggactaccca gtgttggtaa
     1621 atccacactt cttaattgtc ttactaatgc caaatccaga gttgcctcgt atcaattcac
     1681 tacgcttact gccgttcctg gaatactgga ttaccatggg gcaagaattc aaattcttga
     1741 tatgcctgga ataattgaag gagcagcaaa agggaagggt cttggcaaac gagtgctttc
     1801 agtggccaga aatgcagacc ttcttttgat tgttcttgat gtatttcagc ctcaccactt
     1861 ggctatttta aagaaagagt tgtctgaaat aggaattaag gcagaccaga agccacctga
     1921 cgttataatt gaaaagatgt ctacgggtgg gatttctata aatatacagg ttcctgtaag
     1981 ggtgactgaa aacctagtca aagaaatttt gcgtatttat ggcatacaca actgtcgaat
     2041 caccataaga gaaccaggac tgacagatga tcaattaata gatgtgttaa atggcaatag
     2101 agtttatgtt ccttctctaa tagtattgaa caaaatagac cttgtaaatc aaggattcat
     2161 aagggaagtt caatcaaaga ttggcgatga atttgtccct atttctgccg atgcaaatat
     2221 caatgtagat gcgttgaaag aatcaatata caaaaaattg gattttatta gaatttatat
     2281 gcggcccaag aaccaggaaa cagactacaa agagccaatg attatgcgta gaggttgtac
     2341 tgttggagat gtatgtaata agattcatcg taatatggta aaagacttta ggtttgcaaa
     2401 catatgggga aggagtgcaa aatatgatgg tcagaaagta ggtttagacc atgcacttat
     2461 tgatgaagac gtattaacca tagtaaaaag agttaatgca atttgatata atgaattgat
     2521 attttgtaaa cctttcaaca ttgttaaaga tgggttaagt ataacaaata cataaccatt
     2581 caaaatttaa ttgtgttggt tgttggagcc gcttgttcat tactttgtaa tattgggaga
     2641 tatgttacct catagatgat tattactact tgaattgcag ttttatagag tcactcagaa
     2701 acaccctcca aattctaaaa ttgagtggtg ttgtagtttt caaatggata aaaactggat
     2761 gtaagatact ttgaagaaac tagacaatat gttgtaatgt aggagattaa aattttgaag
     2821 tgaggagcag ggctcatcat gtcatttata gcatttgtca cagaacatct acaaatttac
     2881 acctataaat tttaacg
//
LOCUS       DASQSJ010000246         3027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_228189, whole genome shotgun sequence.
ACCESSION   DASQSJ010000246 DASQSJ010000000
VERSION     DASQSJ010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3027
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228189"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..736
                     /locus_tag="VE223_04895"
     CDS             <1..736
                     /locus_tag="VE223_04895"
                     /inference="COORDINATES: protein motif:HMM:NF012993.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HZC20959.1"
                     /translation="LKKVRLSDSDIVCLPELWYSRILTNFETEFHKIIDIAKEYNMVI
                     IPGAFIERSNSNNNNKNGNDLQISSPVIGNNGMVLGRQLKIHPFGSQRKVVKAGTKVE
                     LFETRNIKFGIGICYDIVFPEVARALVRKGADILFFPSKIRYEGIKPWHMYVQVRALE
                     NRIPIAAPNVCGDNNSSNNNSIYKGKSIFVDFDYDYKTDIAIPKLRFGSSANEQILIM
                     DIDVKRIRKLRKKRFEDLRNHLYGLF"
     gene            896..1189
                     /locus_tag="VE223_04900"
     CDS             896..1189
                     /locus_tag="VE223_04900"
                     /inference="COORDINATES: protein motif:HMM:NF020317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GYD domain-containing protein"
                     /protein_id="HZC20960.1"
                     /translation="MPNYIILFNFTDQGIRNVKDTVKRAESFKAAVEKAGGKFINEFY
                     TFGKYDIVTIVEAPNDEAITSVLLSTGSLGNVQSETLKAFSMSEAANIIEKLP"
     gene            1556..>3027
                     /locus_tag="VE223_04905"
     CDS             1556..>3027
                     /locus_tag="VE223_04905"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HZC20961.1"
                     /translation="MSAVSSASTSATTNTALTTTSTATATPIKHLVVIFQENVAFDHY
                     FATYPKAANPNGEPHFSSSPNTPSINGLTTAGLLNNNTNLANPFRIDRSQVAKVTPCN
                     PTHKYTPLQKSFNGGLMDKFVQNSELSSQKNCDPKLVMGYYDGNTVTALWNYAQHYAM
                     SDNFYSSNIDPSLPGHLNLISGQTHGATPTNISGNVANGTVIGDIPSVYDDCSTGKTI
                     AMSGKNIGDLMNEKGVSWGWFQGGFKPSDTNPNSNNKAVCGTSHVNIAGKRVTDYVVH
                     HEPFQYYKSTTNPHHLAPTSSAMIGKKDQANHQYDISDFWNAVDVGNLPTVSFLKASQ
                     YQTGHPGDSDPIDEQTFLVNTINRLQRLPQWNDMAIIIAYDDSGGWYDHVMPPIISQS
                     NDPRYDALIGPNLLCGHAATAAYQDRCGYGARLPMLVLSPYAKVNYVDHSVIDQSSIL
                     RFIEDNWHLGRIGNQSFDTKAGSIMNMFDFSNSGYKPKNN"
BASE COUNT         1019 a          531 c          539 g          938 t
ORIGIN      
        1 actaaagaaa gtcagattgt ctgattcaga catagtgtgt ttaccggaat tatggtattc
       61 aagaatactc acaaattttg aaacagaatt tcacaagata attgatatcg caaaagaata
      121 taatatggtt ataattccag gggcctttat agaaagaagc aatagtaaca acaacaacaa
      181 aaatggtaat gatctgcaga tctcttctcc tgtaattgga aataatggta tggtattagg
      241 ccgtcaattg aagatccatc catttggctc acaacgcaaa gttgtaaaag ctggtaccaa
      301 agtagagcta tttgaaacta ggaatattaa gtttggaata ggaatatgct atgatattgt
      361 ttttccagag gtagctagag ctttggtaag aaaaggtgca gatatactct ttttcccttc
      421 gaaaataagg tatgagggta taaagccgtg gcatatgtat gtacaagtga gagcccttga
      481 aaacagaata ccaatagctg caccaaatgt ttgtggtgat aataatagta gcaataacaa
      541 tagtatctat aaaggaaaaa gcatttttgt cgattttgat tacgactaca agactgatat
      601 tgctattcca aagcttagat ttggatcatc ggcaaatgag cagatactta taatggatat
      661 cgacgtaaag cgtattagaa aattgcgcaa gaaaaggttt gaagatttac gaaatcactt
      721 gtatggattg ttctgattac tattctctta tcaatggcaa gaatgttttc tttatcaatt
      781 gctgctagat ctcgatcctg tattagtgaa tggctaacaa aatcatcaaa tgttttgaat
      841 ccagatgtat aactaaaaag gaatattttt taagtaaagt cttgctgata aatatatgcc
      901 taactacatc attctattta actttacaga ccaaggaata agaaatgtaa aagatacggt
      961 aaagagagct gaatctttta aagctgcagt tgaaaaggca ggtggtaaat ttattaacga
     1021 attctataca ttcggaaaat acgatattgt aacaatagtt gaagctccaa atgatgaggc
     1081 aataacatct gttttgctct ctacaggaag tttaggtaac gtacaaagtg aaacactcaa
     1141 agcattttca atgtctgaag cagctaacat aattgaaaag ctaccttaat tccaactgct
     1201 gctataattg tgtagaccgt gaatattatt catttcgtct tgtattgctt atatcagtaa
     1261 gttcactttc aaattagtct atagacatca agatatgata taatttgtag taaatagttg
     1321 ccattgttta tttttcttta ttttttctat ctctggaagt gattttttac ctatgataaa
     1381 aagtctataa ttgacccttg gctttattcc aaaaagatga tttcattttt tgtctatctt
     1441 cattaatttg ttaaagcata aataacctgc gatttaactt cagatattga agaaggaaag
     1501 attaacactt gttatcttga tgttgctagc accattgatt ttattcaata ctttattgtc
     1561 agccgtatct tcagcatcta cctctgctac tacgaacact gctttgacaa caacaagtac
     1621 tgctactgcc acacctatca aacatcttgt cgtaatattt caggaaaatg ttgcatttga
     1681 ccattatttt gctacctatc ctaaagctgc aaatcccaac ggagaaccac acttttcatc
     1741 ttctccaaac acaccttcaa tcaatggtct gactacagca ggtctattga ataataatac
     1801 gaatttagca aatccatttc ggatagatag atctcaagtt gcaaaggtaa ctccatgtaa
     1861 tcctacccat aaatacacac cccttcaaaa gtcctttaac ggcggtctta tggacaaatt
     1921 cgttcagaac tcagagttat cgtcgcagaa aaattgtgat cctaaattgg taatgggata
     1981 ctatgatggt aatactgtca cagcattgtg gaactatgct caacattatg caatgagtga
     2041 taacttttat agctccaaca ttgatccatc ccttccaggc catcttaatc tcatctcagg
     2101 ccaaactcat ggtgctacac caactaacat atcaggtaat gtagccaacg gtaccgtaat
     2161 aggtgacata ccttcagttt atgatgattg ttctacagga aaaacaatag cgatgtcagg
     2221 aaaaaatatt ggagatttga tgaatgagaa aggcgttagc tggggatggt tccagggtgg
     2281 tttcaaacca tctgatacta acccaaatag caacaataag gcggtatgtg gtacatctca
     2341 tgttaatatt gccggaaagc gtgttactga ctatgtagta caccatgaac catttcaata
     2401 ttataaatcg actacaaatc cacaccatct tgctccaaca tcatctgcaa tgattggaaa
     2461 aaaagatcag gccaatcacc aatacgatat atctgatttc tggaatgctg tagatgtggg
     2521 aaatctccct acagttagct tcttaaaggc ttctcagtac cagacaggtc atccaggaga
     2581 ctctgatcca atagacgagc aaacattttt ggtaaataca ataaatcgct tgcaaagatt
     2641 accacaatgg aatgatatgg caatcattat agcatatgat gattctggcg gctggtatga
     2701 ccatgtaatg cctccaataa taagtcaatc taatgatccg aggtacgatg cacttattgg
     2761 acctaatcta ctttgtggtc atgctgctac agctgcttat caagacagat gtggatatgg
     2821 tgcgcgttta cctatgctgg ttctatctcc atatgcaaaa gtaaactatg ttgaccattc
     2881 tgtaatagac caatcatcta ttctacgttt tatagaagat aattggcatc ttggaagaat
     2941 tggcaatcag tcgtttgata ccaaagctgg ctcaatcatg aatatgtttg actttagcaa
     3001 tagtggttat aagccaaaga ataataa
//
LOCUS       DASQSJ010000247         3053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_228404, whole genome shotgun sequence.
ACCESSION   DASQSJ010000247 DASQSJ010000000
VERSION     DASQSJ010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228404"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(370..1071)
                     /locus_tag="VE223_04910"
     CDS             complement(370..1071)
                     /locus_tag="VE223_04910"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HZC20962.1"
                     /translation="MTPTVIANNYYMILTMTHFQSDKFILYLNSSLAMENAAIERVQR
                     RVQQTILEDVRQQLQLHLEETRQHQDRLVQLIRKLGGTATQERGELPLAIPPQSLRNL
                     IHSSMNAAEQELMQSVEDTIVENAEIIGYNLLIQMAEKMNIGDAIPSLRQSLHEEEKM
                     FGWLRANAPAMFAKLWPQIASPSDDTDTAASSTIKTSKESVAEIHQTFKCESCNGSFN
                     SREDLRQHTIHKHEK"
     gene            complement(2654..2881)
                     /locus_tag="VE223_04915"
     CDS             complement(2654..2881)
                     /locus_tag="VE223_04915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20963.1"
                     /translation="MTIQNMGLLTWIMLIVVILSIIGQGWNVFVSSIFKGLDRVLNSI
                     SPIARDLDKIAKDYAANNITKNVAAGFGMNV"
BASE COUNT          958 a          533 c          532 g         1030 t
ORIGIN      
        1 tgcattgatt tttagtggat acatctttag atcgtttggc agagacaaag agaaatataa
       61 aagcaaagat gaaatataac agcagacaac cttaaagcat atccaaacat atgatgccaa
      121 aatgccatta ggaaagccta aaagcaaaag atgaaaatct atgttccaat tatctttagt
      181 gggcgtattt acgaattatg tatgctaact gcattcttat cttctcgaag tgtatctctg
      241 attacaactg cgatatcagg tatatgtgat ggtcgttgcc acaaatgagt gttgctgtga
      301 tcactttcat tatgtgtcat attacgtgca gattaacttt atgcgattct gaccgcatat
      361 agccttatct tacttctcgt gcttgtgtat ggtgtgctgt cgtagatctt ctctagagtt
      421 aaacgatcca ttacagcttt cgcacttaaa agtttgatga atctcagcta cactttcctt
      481 gctagttttg atcgtggaag aagccgcggt gtcagtatcg tccgaaggcg atgcaatctg
      541 aggccatagc tttgcaaaca tggcaggtgc gttagctcta agccatccaa acatcttctc
      601 ttcttcatgc aagctttgtc tgagagatgg tattgcatca ccaatattca ttttctccgc
      661 catttgtata agcaggttat aacctattat ttcagcattt tctactattg tatcctctac
      721 tgattgcatt agctcttgct ctgcagcatt cattgaacta tgtataagat ttcttaaaga
      781 ctgaggtggt attgccaacg gtaattcacc tctttcttgt gttgcagttc ctccaagctt
      841 tctaataagc tgcactagtc tatcttggtg ttgtcttgtt tcttctaaat ggagttgtaa
      901 ttgctgcctt acatcttcta atattgtttg ctgtactctt ctttgaactc tttctatagc
      961 cgcattttcc attgccaatg aagaattcaa atacaaaata aatttatcag actgaaaatg
     1021 tgtcattgtc aatatcatat agtaattatt tgctataaca gttggcgtca ttatgtgcaa
     1081 aagggattgt tatattagac cgctattgtg acaggacaat ctttcctaat cacctaacag
     1141 actagagtct tcgattattc cttcctttac agcgcgttgt atcctttgta gaactcgcta
     1201 tcgaccaatg aaagttacta tgaattctaa catgaaagat ctttcatatg aatttgttcg
     1261 aatcatttgc tttatataat aatatgattt tatgttttgc tatgcaggaa taaaatctct
     1321 aattgccatg aatttaatta tggttataac gctgcttatt ttgtaacagg aatataataa
     1381 tccagttgta atgacatcaa atagatcacc gataattggt cttaaaatat atgagctgct
     1441 aaatacttca aagtatgaat tgaactgcga tagcattgta tttaacaatg catatcttta
     1501 ggcttaaaaa agaagtacaa atctagttat ctacttgatt atgataactt cttcgatttg
     1561 ttaattccaa gagaagatga tctagagaga aaaaagtaac cacatcagac tgtcatacta
     1621 agtaatataa ttgtaaagct tatgttcgat ttctcagtcg agatgtagtg caaatatgtg
     1681 acactcaatg ggtagagaat ttttatatgc aacgaaacta tgtttatcat agataacagt
     1741 ttaatataaa acctttcgaa gataattatc gcaaatctat tataaagata aaggagtcgt
     1801 caattgaaac attgacatat ttgtgtccta attgtggcga cgacttaatt gaatgtgtaa
     1861 cgtttagtga attcgatgat aacaacggct ggtgttgcaa aaaatgcaag gagttctacg
     1921 gtagaaaaga gattaagaga acgatggtct tcaatgttta attggcttta attatattaa
     1981 ataggaaaac gactacaata gagattcttt aagttttatc ggcccaatac agattggcag
     2041 ggatgctcta tctatttacc tagaagcttg cctataacgg gagtattgtc cattggattc
     2101 tatctagagg tgtggttacc ggaattttca cttttgatgt tgcaaggtga tgtagtgttt
     2161 gttgccgcat taatatcgct gtaagtttta ctatcacagc aactttggct aatggatttt
     2221 aattcgatct ctaggctaat gctttgtgta gtggaaacga aagatccgat aacaattgct
     2281 gaaataacta tagttactaa tattgtggtt ctgcttgagc atatgatgtt ctggtatagt
     2341 tagaatcaat attacattgt cgtttgacat ctattactta tacttcgtgc taagagatct
     2401 tctactctcc ttactcatta gcagtacgag gcaacggcat tagaacaaaa acttctaaca
     2461 atcacaatct cgtagcatcg accaaaaagg tggtttgtta aaaacaataa taagcgccgt
     2521 caggagctgc acacttgtat caaaatgcat ttgatgtggc tagcacgtaa cataagtaac
     2581 cttgtgtccg agacaaaatt agacaggata cataatgaaa gctattgaaa cgcggacgtg
     2641 tagaaataat taattagaca ttcatcccaa agccagcagc aacgttttta gtaatattgt
     2701 ttgcagcata atctttagct attttatcca aatctctagc tatgggacta atgctattta
     2761 ataccctgtc taaaccttta aagatacttg aaacaaatac gttccatcct tgtccaatta
     2821 tagatagaat cactactatt agcataatcc atgtaagcaa ccccatattt tgaatagtca
     2881 tctgattatt tttaaagttt acaggtgcta aggaaatgat ccgtcattat caattcctgc
     2941 atatattagc aaatgaaacc aaaaaattat acaacatttt agccttatac aaaccttcga
     3001 tcacgcatat acctcagtgg tcactgagaa ctaccttacc tcttgactta ttc
//
LOCUS       DASQSJ010000248         5453 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_228521, whole genome shotgun sequence.
ACCESSION   DASQSJ010000248 DASQSJ010000000
VERSION     DASQSJ010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228521"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(386..550)
                     /locus_tag="VE223_04920"
     CDS             complement(386..550)
                     /locus_tag="VE223_04920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20964.1"
                     /translation="MVTPIVEHTLTNRTNEIDPNEMALMGISMGGYLAASKSLNPFTL
                     RDPTLLKSQF"
     gene            complement(532..798)
                     /locus_tag="VE223_04925"
     CDS             complement(532..798)
                     /locus_tag="VE223_04925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20965.1"
                     /translation="MSKQLPTVHLNNNNSTHASSESPNCERNYNHPKVDESSASLPQG
                     ASAAYYMLERGYNRVTFEGPAQGGVNANRRFHLDMIGKRWLHLL"
     gene            1058..2113
                     /locus_tag="VE223_04930"
     CDS             1058..2113
                     /locus_tag="VE223_04930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HZC20966.1"
                     /translation="MKAARIVKLNEPLRVQDLQTPKPKGTQILIKIQSSGVCHSDVHV
                     WEGYYEGIGGQPLKTTDRGVKYPLTPGHEIAGFVDSFGEQVEGFSQNEKVLVYPWIGE
                     GMCPACRVGEENLCDKPRSLGIYTDGGYADHVLVPNYRYLVKIGDEMDTDTSAPLSCA
                     GLTAYGAVKNANLKPDDNVVIVGTGGLGLMAIQLAKAITGARIIAMDLDDQKLDVAKK
                     NGADITINSKKEDPVKAVMELTDKLGADATIDFVNASKTVETDIQLLRRRARLVLVGL
                     FGGELKLSLIAMPTRAYKIIGSYTGSISELVELVSLAKRGVIKPVISERFKLEQATEA
                     LSKLKDGKIIGRGVINP"
     gene            2158..3558
                     /locus_tag="VE223_04935"
     CDS             2158..3558
                     /locus_tag="VE223_04935"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HZC20967.1"
                     /translation="MDKKLKTINPATEEVLEEYELIGKEQLNDIVKKSRDAFLEWKED
                     IDKRADFLYAFAKEFRKNKENLAKTATKEMGKAIKESRSEVEKCAWTAEYYADHGKIF
                     ANDEVVNTDARKSIITFQPLGVIGSIMPWNFPYWQGLRFAAPSLMVGNTIVLKPASAT
                     MQCGIEIEKTFDRAGVPHGVFQTIVGDSSSAETLIDADGINAVTFTGSVPVGAKVAQR
                     ATSQIKKTVLELGGSDPFIVCDDADIEKASTGAVKGRFINCGQSCIASKRFIVTKKVA
                     SEFIEKFVQKTEKLKVGDPLSDDTDIGPLVNAKSLENMQGIVNRTVKEGSELLIGGGE
                     RIKNKGYFFAPTILKNVLPHMEIAQEEVFGPIAPVITVDDEKEAIRIANDSKFGLGAS
                     IWTQDLVKAERLSSMVQSGIVTVNNVVVSDPRVPFGGVKNSGFGRELSRFGMLEFVNI
                     KSVRFYDQLIYEHHVE"
     gene            complement(3933..4499)
                     /locus_tag="VE223_04940"
     CDS             complement(3933..4499)
                     /locus_tag="VE223_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20968.1"
                     /translation="MIRTIVGIIGLFTSLVTALGLVPAFALSHYQLGYNDGCAGRTVP
                     GSHTADYERGHMHGQEACHNSGASQGPSTVVTGKQEVKTQTSTYQMGYNDAFYNIYGG
                     SLKPGHHTAGYMNGFNAGLAARNSGQSSIKSSSPFPCAGGTGVEYCSGYHDGAVQADR
                     DDAEMSKETGSVDVNKHLPCVNSNPDYC"
     gene            4611..4733
                     /locus_tag="VE223_04945"
     CDS             4611..4733
                     /locus_tag="VE223_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20969.1"
                     /translation="MEINAREYEKEEAKQEEELDRLCSKKHTDSFTYALRDPKR"
     gene            5134..5283
                     /locus_tag="VE223_04950"
     CDS             5134..5283
                     /locus_tag="VE223_04950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20970.1"
                     /translation="MLSYKREYDKVMESMVAVISNMLLTNPKMPIAELMRNDDDNSDN
                     GNSAF"
BASE COUNT         1768 a          940 c         1118 g         1627 t
ORIGIN      
        1 agcattgatg gaactcgata tgctatggca ggggtaattc ttttcagatg attttatcca
       61 taaagcgtta tagggtgttg tcaccattat tattttacaa atgtacgtcc ttctttgtaa
      121 aatagaggca gtaccaccac atctttcctc ttacaaatct acacaagctt tgaatcttaa
      181 atctatctat ctactatgaa tagataatgg acgaaaaaca gctacccagt accaaaaagt
      241 actctaccct ccggcattca cttgtcctgc tgaactccaa gaacgcgatc ttgcctttct
      301 aggttatcgc ggctgcacag cacgcaatct tgaaccctta acactcatcc acaatatatt
      361 cagaaaacta caattaatta ttttgttaaa actgtgattt caagagggtc gggtccctga
      421 gtgtaaatgg gttcaatgat ttacttgctg ctaaatatcc tcccatactt attcccatta
      481 gtgccatttc gtttggatct atttcatttg tcctattagt caatgtatgc tctacaatag
      541 gtgtaaccac cttttcccaa tcatatctaa atggaatctt ctgtttgcgt ttactcctcc
      601 ctgggcaggt ccttcaaatg tcacacggtt ataacctctt tctagcatgt aatatgctgc
      661 tgaggcaccc tgaggtagcg atgctgatga ttcatctacc ttgggatggt tgtaatttct
      721 ttcgcaattt ggagattcag aagaggcatg tgtactatta ttattattca gatgtacggt
      781 ggggagctgc tttgacatgc gacttaagaa aatcagccag tggtcctttg atttctttaa
      841 cactatgttt aaacaatgtt atttcttcta ccatttgtta cttttgacta caataacaaa
      901 tatggagtag aattagaatt tagaccaagg tgcaaagaca atagcagtga tctatataaa
      961 gatttaactg gatctataca agaaaaaccc ccctgatcga aagcttttca aatttccaaa
     1021 cagcagataa taaaagaaga ggtgtatatg atgggtattg aaggctgcta gaatagttaa
     1081 attaaatgaa cctttacggg tgcaagatct tcaaacgcca aaaccaaagg gtacacagat
     1141 cctgatcaaa attcagtcat caggtgtatg tcatagcgat gttcatgtat gggaaggtta
     1201 ttatgaaggt ataggagggc aaccattaaa aactacagat aggggtgtga aatatcctct
     1261 tacaccagga catgagattg caggttttgt ggatagtttt ggtgagcaag ttgaaggatt
     1321 tagtcaaaat gaaaaagttt tggtatatcc ttggataggc gagggaatgt gtcctgcttg
     1381 cagggttggt gaagaaaatc tgtgtgataa acctagatca ttaggtatct acactgatgg
     1441 aggttatgca gatcacgtat tggttccaaa ctacagatat cttgtgaaaa taggagatga
     1501 aatggataca gatacaagtg cgcctttatc gtgtgctggt cttacagcat atggagcagt
     1561 aaaaaacgcc aatctaaagc cagacgataa tgttgtaatt gttggtacag gaggattagg
     1621 attgatggcc atacaacttg ccaaagcgat tactggggcc aggataattg caatggatct
     1681 agacgaccag aaattagatg tcgcaaaaaa gaatggtgcg gatattacta taaattcaaa
     1741 aaaagaggat cctgtaaaag cagtcatgga attaactgac aaattaggtg ctgacgcaac
     1801 aattgatttt gttaatgcat caaaaacagt agaaactgac atacaattac taagaagaag
     1861 agcaaggtta gtcctggtag gcttatttgg cggagaactg aaacttagct taattgcaat
     1921 gccaactaga gcttataaga taattggatc atatactgga agtattagtg aactggtaga
     1981 acttgtatca ttagcaaaga gaggagtaat aaaaccggtc atttcagaaa ggtttaagct
     2041 tgagcaagct accgaggcac tttccaaatt aaaggacggc aagatcattg gtaggggagt
     2101 aatcaaccca tgaacaaaga tattataaaa gattcatcat tataacttgc atcaggcatg
     2161 gataaaaaat taaagactat aaacccagcc acagaagagg ttcttgagga gtatgaatta
     2221 attggcaaag agcaattaaa tgatatagta aagaaatcaa gagatgcatt cttagaatgg
     2281 aaagaagata ttgataagcg tgcagatttt ctctatgcat ttgctaaaga attcagaaaa
     2341 aataaggaaa atctagccaa aactgctaca aaggagatgg gaaaagcaat taaagaatca
     2401 agatcagagg tagagaaatg tgcatggaca gcagaatatt atgcagatca tggaaaaata
     2461 tttgcaaatg acgaagttgt taatacagat gcaagaaaaa gtatcataac atttcaacca
     2521 ctcggtgtaa ttggaagtat tatgccatgg aattttcctt actggcaggg actaagattt
     2581 gcagctcctt cattaatggt tggtaacaca atagtactaa aacctgcaag cgcaacaatg
     2641 caatgtggga tagaaattga aaaaacattt gatagagctg gagtaccaca tggagttttt
     2701 caaacaattg taggagattc tagctctgca gagacactta tagacgcaga tggtattaac
     2761 gcagtaacgt tcaccggaag tgttcctgta ggcgccaaag ttgcacagag agctacttct
     2821 caaataaaga agacagtttt agaattaggt gggagtgatc ctttcatagt atgtgatgat
     2881 gcagatattg aaaaagcatc tacaggtgct gtgaaaggca gatttattaa ttgtggacaa
     2941 agctgtatag catcaaaaag gtttattgtt actaaaaaag tagcaagcga atttattgaa
     3001 aagtttgtac aaaagactga aaaactcaaa gtaggcgacc ccctatcaga cgatacggat
     3061 attggacctc ttgttaatgc taaaagtctt gagaacatgc aaggtattgt aaataggact
     3121 gtcaaggagg gatctgaact tcttatagga ggaggggaaa gaataaaaaa caagggttac
     3181 ttctttgctc caactatcct taagaatgtg ttacctcata tggaaatagc acaggaagaa
     3241 gtatttggtc ctattgctcc agtaatcaca gttgatgatg aaaaagaagc tattagaatt
     3301 gcaaatgatt ctaaatttgg acttggtgca agcatatgga ctcaggattt agtgaaagca
     3361 gaaaggttat cgtcaatggt tcaatcagga atagttactg tgaataatgt agtagtttca
     3421 gatccccgtg tcccatttgg aggagtaaag aatagtggat ttggtagaga actatctaga
     3481 tttggtatgc ttgaatttgt aaacataaag tcagtaaggt tctatgacca attaatttac
     3541 gagcatcacg tagaataaaa ttatataacc tcccatgaga gctcatttgt caaaaactaa
     3601 caatattgat ataccaaata tgtaagatac tattgagaat gtacttatac ttcagggcgg
     3661 aggttcttta ggtgcatttg gctgtggggt cttcaaagcc cttgcgagca gcaatataaa
     3721 attggatata attgcaggta cctcgattgg agggctaaat gcttctcttc tctgtggtat
     3781 cagtacatgt tatcaggctg agactccaag taaagccaca caaagtctgc aaagaccatt
     3841 ccgcacttca catcttaata tcgaatgatt cttggtattg tttgctatca tccaagtata
     3901 ttagcctcgt catcgtatcc tttaatgaat cctcagcaat agtctggatt gctattaaca
     3961 catggaagat gtttattgac gtcaacagat cctgtttctt tggacatttc tgcatcgtct
     4021 ctgtcagctt gtactgctcc atcatgatat ccactacaat attctactcc tgttcctcct
     4081 gcacatggga agggacttga gctctttatg ctggattgac cactgtttct tgctgctaat
     4141 cctgcattaa atccattcat atatcctgct gtatggtgcc cgggcttgag acttccacca
     4201 tatatgttat agaaggcatc gttgtatccc atttggtatg tcgaagtctg tgtctttact
     4261 tcttgttttc cagttactac tgtactaggg ccttgactgg caccgctgtt atgacatgct
     4321 tcttgcccat gcatatggcc tctttcataa tcagccgtat gagatcctgg tacagttctt
     4381 ccagcacagc catcattata gcccagttgg taatggctta atgcaaaagc cggtactaat
     4441 cctaatgcag tgaccaggga tgtaaacaac ccaattattc ccactattgt ccttatcatt
     4501 atcatattct acaacgagtc aaactgttgt aaaaatatgt tatgatttat caaaaggtac
     4561 ttaccaaaag ctagccatat tgtctcatgc tgagattttt tcaacagcct atggaaataa
     4621 acgccaggga atatgaaaaa gaggaagcaa agcaggaaga agaactagac aggctttgta
     4681 gtaagaaaca cactgacagc ttcacgtatg cactaagaga tcctaagaga tgaagcccaa
     4741 gaagtacaat tcgctaatgc tgtgaaagca aaaatagagc ctttcctatg gaccaataga
     4801 gatggatatg tgcctttaag acgattatta ataataattt gatctgattt taactaatcc
     4861 tctatcaaat attgcttttg tatgtgtatt attgtatagt tggtttattt gttttagtgg
     4921 tccttcttca tcaatcggaa aagaatggat ctactatgaa aagcacattt tgtgtcttga
     4981 atggtattat taagaggtgc atcagttata ggcagcaagt caaaaccttt gttaaataca
     5041 tatttgtata gccagtattg gctgcgtagg tagagatcct atcatgatta ccttgttatt
     5101 gttatcatta ctagtgttct taacatctga tggatgctga gttataaacg cgaatacgac
     5161 aaagttatgg aaagtatggt tgctgttatt agcaacatgc tgcttaccaa tccaaaaatg
     5221 cctattgctg aacttatgag aaatgatgat gataatagcg ataatggcaa tagtgctttt
     5281 tgactggtta ttgttattat cctccttctt ctaattgcct gcgatatgtt ttctagcaat
     5341 actgcagctg caatataaaa tgcaggcagt attatcagta aatgaaagta tgttggcatc
     5401 ttacacctag aactgcgcta ctcaaggctg gaccttgatc catcccatct tgt
//
LOCUS       DASQSJ010000249         4217 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_228675, whole genome shotgun sequence.
ACCESSION   DASQSJ010000249 DASQSJ010000000
VERSION     DASQSJ010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4217
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_228675"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="VE223_04955"
     CDS             <1..729
                     /locus_tag="VE223_04955"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HZC20971.1"
                     /translation="IRDMIKSKMFDCVITTCGALDHDIARTYDNYYAGEFRMNDYSLF
                     KKNIHRLGNVLIPMNNYGPLIEEKVQACLKDLYYKHGKRDIATYEIVDYIGSTLDESS
                     FLYWAHKNKIPIIVPGIVDGAVGSQVWFFHQQHKDFKINILMDETKLSDLIYEAKKSA
                     AFMVGGGISKHHTLWWNQFRGGLDYAVYITTASEWDGSLSGAPVEEAISWSKVTTKAR
                     HATIHGEATVLLPFIYAALIEHRN"
     gene            1177..2058
                     /locus_tag="VE223_04960"
     CDS             1177..2058
                     /locus_tag="VE223_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HZC20972.1"
                     /translation="MEFVDTSIVEQIEMKMIRPSQFAIRDRFQKMAPEDDTLMCSIRE
                     HGLLQPILIRPLVHGFEIVAGHRRFKACRSLRWRFIPCKLREMSDKQAYEIQLTENIQ
                     RKSMDPIEEAEAFRRYVIDFGWGGVSELAKKLGKSEEYVSHRIQLLKLPDDIKQQILT
                     DRLNVSQALELSNIPSERQSEIISQVINKNLTVRQIREVKSILREEGVFGDDLTHCKS
                     IAKSVHVVRVTKKTSLALKVALARVDNLIDEVHSTIEPEQRAEITNFLMALRLRIHSM
                     IDETIRFKNSCIKSTKR"
     gene            complement(2068..2688)
                     /locus_tag="VE223_04965"
     CDS             complement(2068..2688)
                     /locus_tag="VE223_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HZC20973.1"
                     /translation="MKTIFYSCWIVKISIIYDAKIKTTIMVDGIDEIILSTLSTNSRQ
                     DTSELSDFLRGYGYNLTDEEIESRINKLEEDHVITGYTISIDMEKLSRRPARVLFLTF
                     RTSQHLSSRLTSLKKYFTDAPFALFSGRTRGGYDWISVQSFITQEMADEESDIFRSLF
                     GDIIQSYEVYDFNPTKGSSIRALTHTSQEYKKFLNEWSASSSGSAK"
     gene            2782..3891
                     /locus_tag="VE223_04970"
     CDS             2782..3891
                     /locus_tag="VE223_04970"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015204 - urea transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071918 - urea transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HZC20974.1"
                     /translation="MVGPANFSTGNPALDFFFTLFNGISEVPLFSSPITGTLILAGVF
                     LASRKAGAMMVLSGLIGAGMAIIFGAPYGLVTFGLFGYNSILTGMAFWSGPFVKANKA
                     TFFISVFGAAVTAVSWMAFSHLMGDLFVEGKNPWAIPGFTSSFIFTTWAMMYASRRFG
                     HDIWPAPPPPPKEELIAGSSNPVQLENFKWTAKEFIIATLKGVSQVTFVENWKTGVLW
                     VVGLTLSFELAPLIAGQARPWFTNAYTAGWNELSHLYLGGLMALVGSAVGAALAILTK
                     LPTAEIRIGLHGFNQVLVMIALTSFLPLTPQSFMMALLATVACSVIVMPALQRFFGMW
                     GLPALTGPFVFTAWVFLLGISGFTHIPAGIGWSRP"
     gene            4013..>4217
                     /locus_tag="VE223_04975"
     CDS             4013..>4217
                     /locus_tag="VE223_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20975.1"
                     /translation="MNPIEFEQFLKFAEDQLSNKSDSQKIQAFISWCKKNNTEEIILR
                     LSSEDKGGWGKNFFFLDFTTSRII"
BASE COUNT         1302 a          770 c          884 g         1261 t
ORIGIN      
        1 atacgtgata tgataaaaag caaaatgttc gattgcgtaa ttacaacctg tggtgctctt
       61 gatcatgata tcgctagaac atatgataac tattatgcgg gtgaattcag aatgaatgat
      121 tattcactat tcaaaaaaaa catccaccgc ctgggcaatg tacttattcc aatgaataat
      181 tacgggccgc tgatcgaaga aaaagtgcag gcctgcctaa aagacttgta ttacaaacat
      241 gggaaacgag atatcgcgac atatgaaatc gtagattata ttggcagtac tcttgatgaa
      301 tcatcatttt tgtactgggc acataaaaat aaaattccaa ttattgttcc aggtatagta
      361 gatggtgccg tcggtagtca ggtttggttc tttcaccaac agcacaaaga cttcaaaatt
      421 aatatactaa tggatgaaac taaattatct gatctgatat acgaagcaaa gaaatcagct
      481 gcattcatgg ttggtggtgg catctcaaaa caccatacgc tatggtggaa ccagtttaga
      541 ggtggcttgg attatgcggt atatattaca actgcatcag aatgggatgg aagcttgagc
      601 ggcgccccag ttgaagaagc aatttcctgg agcaaggtca caactaaagc tcgacatgca
      661 acaattcacg gcgaggcaac tgttttgcta ccatttattt atgctgccct catagagcat
      721 agaaactgag atcttggctg tatctgtcag ctattgttgg tagtaatatt cgtaagatta
      781 atatgataag aatgttttat gaccatatgt cgcaatagta attacagtag tgcaataatt
      841 ctgaaatttg atacaaattg agttttaaaa ctggcagtat cggcatcttg gagttctcgg
      901 acttgttatt ttgattggtt ctacactttc ttgtctattc tgaccggata ataggatgtc
      961 cccatgattt aattactagg tatatcccca tcttaaatca aaaatagtta tgatactaaa
     1021 tatttatcat ctaaaagatg aaaaccaaag gaaacagatg gaaaagtata acatatgggc
     1081 aaatccatcc atgtatgcgg tttatggaat gttgacatgg atattatata gcaaattata
     1141 agtacttggc catcagatag gaatcagctg gtcctcatgg agtttgtcga cacgagcata
     1201 gtcgagcaaa tagaaatgaa gatgattcgt ccatctcagt ttgctataag agacagattt
     1261 cagaagatgg ctcctgaaga tgacaccctt atgtgcagca ttagagaaca cggtttactt
     1321 caaccaatat tgatacgacc acttgttcat ggctttgaaa tcgtagcagg tcataggagg
     1381 ttcaaggctt gcagatcatt gagatggcgt tttataccct gtaaacttcg tgaaatgtcg
     1441 gataaacagg catatgagat acagctaact gaaaacattc agcgcaaatc catggatcca
     1501 attgaagagg ctgaggcatt tagaaggtat gtcatcgact ttggatgggg aggggtaagt
     1561 gagcttgcaa agaaactggg aaagagcgag gaatacgtct cgcacagaat acagctttta
     1621 aagctacctg atgatattaa gcagcaaatt ctcactgata gacttaatgt aagccaggca
     1681 cttgaacttt caaacatacc ttcagaaaga caatctgaaa taataagcca agttattaac
     1741 aagaatctga cggttaggca gataagagag gtaaagtcca ttctaagaga agaaggtgta
     1801 tttggagatg atcttactca ttgcaagagt atcgccaaat ctgtccatgt cgttcgtgtt
     1861 acgaagaaga catctctggc tctgaaggtt gctttagcca gagtggataa tttaatagac
     1921 gaggttcaca gtactataga accagagcaa agagcagaaa ttactaactt tctcatggct
     1981 ctgagattga gaatacattc gatgattgat gaaactatac gttttaagaa tagttgcatt
     2041 aagtcaacta aaagataaaa attaacatca tttcgcactt cctgaagatg aggccgacca
     2101 ttcattcaag aatttcttgt attcttggct tgtatgggta agagcacgaa ttgatgatcc
     2161 tttcgtagga ttaaagtcat atacctcgta tgattgaatg atgtctccaa acaagctcct
     2221 aaaaatatca ctttcctcat cagccatttc ttgtgttata aacgattgaa cacttatcca
     2281 gtcgtaccca cctctagtac gaccagagaa aagggcaaag ggtgcatcag taaaatattt
     2341 cttcaagctt gtcagtctac ttgatagatg ctgcgatgtt ctgaatgtta gaaataaaac
     2401 gcgcgccgga cgccggctga gtttttccat atcaatggat atagtatatc ctgtaatgac
     2461 atggtcttct tctaatttgt taattctgga ttctatttct tcatcagtta aattgtaacc
     2521 gtaacctcta agaaagtccg agagctccga tgtatcttgt ctagaatttg tgcttaatgt
     2581 agacagtatt atctcgtcga ttccgtccac cattattgtt gtttttattt tggcatcgta
     2641 gattatagat attttaacaa tccaacagct ataaaagatc gttttcacat aaaagatcta
     2701 gatagggata gtcgaagcct ctattaataa accagcatat cttacaaatt gttaaagtat
     2761 acctagttaa aatgaaattt aatggtggga ccggcaaatt tttctactgg gaatcctgca
     2821 ttagacttct tctttactct ctttaatggc atttcagagg tcccattgtt cagttcccca
     2881 atcaccggaa ctctgatttt agcaggtgtg ttcttggcat caagaaaagc tggagcaatg
     2941 atggtccttt ctggattaat aggggctgga atggccatta tatttggtgc tccttatgga
     3001 ctagtcacat ttggattgtt tggatataac tccattttga ctggcatggc attctggtct
     3061 ggtccctttg taaaggcaaa caaagcaaca ttcttcatat cggtttttgg tgccgctgtt
     3121 accgcagtaa gctggatggc attctcccac ctcatgggtg atctatttgt agaaggaaag
     3181 aatccatggg ctatccccgg atttacatca tcttttatat tcactacttg ggctatgatg
     3241 tatgctagca gacgatttgg acatgatata tggcctgctc cgccaccgcc accaaaagaa
     3301 gagttgattg ctggaagcag caatccagtc caattggaaa acttcaaatg gactgcaaaa
     3361 gaattcataa tagcaaccct aaagggcgtg tctcaggtta cattcgttga aaactggaag
     3421 accggtgtct tgtgggtagt cggcctcaca ttatcatttg agcttgcacc attaattgct
     3481 ggacaggcta ggccgtggtt tacaaatgca tacactgctg gatggaatga gctatcgcat
     3541 ctatatcttg gaggcctaat ggccttggta ggatctgcgg ttggagcagc cctggcgatc
     3601 cttacaaaat tgccaacagc agaaataagg attggattgc acggctttaa tcaggtatta
     3661 gtcatgatag ctctgacgag ttttcttcct ctaactccgc agtcttttat gatggcgcta
     3721 ctagccacag tggcttgctc tgttatagta atgccggcct tgcaaagatt ttttggaatg
     3781 tgggggctgc ctgcactaac agggccattc gtatttacgg catgggtatt tctgctagga
     3841 atctctggct ttacgcatat tccagcagga attggttggt cgaggcctta aatagaagga
     3901 gttagacatc gacaaactca tccttttctt taactgttta aatcactata tctttacata
     3961 taaactataa actaaacaat ataatcataa gaacttggta tatatatgtc aaatgaaccc
     4021 aattgagttt gagcagttcc taaagtttgc ggaggatcaa ttatctaaca agtctgactc
     4081 gcaaaagatc caagctttca ttagttggtg caaaaaaaat aatacagaag aaatcattct
     4141 caggctaagc tctgaggata aaggaggttg gggaaagaac ttcttttttc ttgattttac
     4201 gacatcaagg ataatag
//
LOCUS       DASQSJ010000250         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_188352, whole genome shotgun sequence.
ACCESSION   DASQSJ010000250 DASQSJ010000000
VERSION     DASQSJ010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188352"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            543..1505
                     /locus_tag="VE223_04980"
     CDS             543..1505
                     /locus_tag="VE223_04980"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HZC20976.1"
                     /translation="MDYWQLILLGSIAGFTIFLGLPLAVLQNLSTKKKAFLNAFSIGI
                     LVFLIIDVFSHAWESAETSASDAFAGKSPIRDAIFDLVAMFGGIAIGLLGLLWYESKY
                     MNKPIKQQQELSRKLSTAEGEKISSDSSSSSSSVSGIATGGAELAEQQQQRQLQQQKQ
                     LWQQQQQEATAYRVAMMIALGIGTHNFSEGLAIGQSYVSGATGLAILLIIGFGAHNTT
                     EGFGIAGPLTGLVKKPRIRFLILAGLIGGGPTFIGTILGSLWNSPIAYILFLSIAGGA
                     LVYVSFLMYNSGRRQITNNILMLGIFVGLCAGFITDLIVSLGGA"
     gene            1578..>2314
                     /locus_tag="VE223_04985"
     CDS             1578..>2314
                     /locus_tag="VE223_04985"
                     /inference="COORDINATES: protein motif:HMM:NF042648.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HZC20977.1"
                     /translation="MIVTAQGIAAIPLSFGILLNNNNNNNSIKVANKSISGIEQKVSH
                     KLGRSDQVGATGGSSSSSKKNNIKSIKKILNNKLKVSHAFSGSRIGGVVSKMRFKIAI
                     IKPTFTAAAYTDSFYKFYILFMHTPPGKNVTTDLNLLSSKIPKQLTPTSSVSTMLFLS
                     YHLKKLLPQSTIDSLTDADVDGSSGPSDIFVKNGLDNKYDVLILGHQEYVTQKEYDNL
                     KRFVANGGTLIALDGDLFHAEVKYDKRT"
BASE COUNT          768 a          398 c          454 g          694 t
ORIGIN      
        1 agataaaaat tatagctttg ttcaatgact cggcctggta tctatttaat atacttatga
       61 cagcaagtcg accggtgtta tgaatgctaa taatggcctt agtattgctt taggttatgg
      121 tggtagtggt cgagcaaagc aacacctggc gagtacgatt agctttttat cgataacata
      181 tagtttcatt attaagcatt aaagtaacac acatgtatcc aagatgttca ccaatggcaa
      241 tggtattata ctgatacata aaagctattg caactattaa gatcaatgcc attaatgcca
      301 agattatctc agtaatattt ccgaacataa tcttatgata tatttttgat tacatattat
      361 tattgctatt atttttgcta gtcttgcatt ggccatagtg gactcttgca ggtatctaat
      421 atctttttat aagtacctgg atagtagaat taccgatcag aatatatatt aggctagtct
      481 aattaggtga acctaagatg tcattaataa atgaaatgtg cagaggagag tgatagaaat
      541 taatggatta ctggcaactt atacttttag gatcaattgc cggatttaca atttttctag
      601 ggctccctct agctgtactt cagaatttaa gcacaaagaa gaaagcattc cttaatgctt
      661 tttcaattgg gatattagta tttctaataa tcgatgtctt tagccatgct tgggaatctg
      721 cagagaccag tgcaagcgat gctttcgcgg gtaagtctcc tatacgagat gccatatttg
      781 atcttgttgc catgtttgga gggattgcaa taggattgtt gggattatta tggtatgaaa
      841 gtaaatacat gaacaagcct atcaaacagc aacaggaatt atcacgtaaa ttatcgacag
      901 cagaaggcga aaagatatcc tcagatagta gtagtagtag tagtagtgtt agtggaatag
      961 caacaggagg agcagaacta gcagaacaac aacagcaaag gcaactgcaa cagcagaaac
     1021 aactatggca gcagcaacaa caagaagcga ctgcatacag agttgccatg atgattgcat
     1081 taggtatcgg tactcataat tttagcgaag gacttgcaat aggtcaatca tacgtatcag
     1141 gcgctacagg attggcaata ctattgataa ttggatttgg agctcacaac actactgaag
     1201 ggttcggaat agccggtccc ttgactggac ttgtaaaaaa acctagaatc cgttttctga
     1261 tactggcagg attaataggt ggaggtccca catttattgg taccatatta ggtagtttat
     1321 ggaactcacc tatagcttat atactattct tatctatcgc tggcggagca ttagtatatg
     1381 tttcattttt gatgtataat tcaggaagaa ggcaaattac aaacaatatt ctgatgctgg
     1441 gtatctttgt tggattgtgc gcaggcttta ttacagatct tatagtttca ttaggtggag
     1501 cctaaagaca actagaaata catcactgaa gatcatcgtt gttagccatc cacattgttg
     1561 ttatcatact atctgtcttg atagtcacag cacaaggaat agcagcaata ccattatcat
     1621 ttggaatttt attaaataat aataataata ataatagcat caaagtagca aataaaagca
     1681 tctctggcat tgaacaaaag gtttctcata agctagggcg aagcgatcaa gtcggtgcta
     1741 ctggcggcag cagcagcagc agcaagaaga ataatatcaa atcaattaaa aaaattctaa
     1801 ataacaagct gaaagtttct catgcattta gtggaagtcg gatcggcggc gttgttagca
     1861 aaatgaggtt taagattgca attatcaagc ctacttttac agccgcggca tacactgatt
     1921 cattttacaa attctacatc ttatttatgc acacaccgcc aggaaagaat gtcacaactg
     1981 acctcaattt actctcaagc aaaataccaa agcaattaac gccgacatca tctgtatcta
     2041 caatgctttt cttgtcttat catttgaaaa aactgcttcc gcaatcaact attgactccc
     2101 taacagatgc tgatgtcgat ggcagtagcg gcccttctga catatttgtg aaaaatggat
     2161 tagacaataa atacgatgtt ctgatacttg gccaccaaga gtatgtcact caaaaagaat
     2221 atgataatct aaaacgattt gttgcaaatg gtggtacatt gattgcctta gacggcgatt
     2281 tattccatgc agaagtaaaa tacgataaaa gaac
//
LOCUS       DASQSJ010000251         3191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_188379, whole genome shotgun sequence.
ACCESSION   DASQSJ010000251 DASQSJ010000000
VERSION     DASQSJ010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188379"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VE223_04990"
     CDS             <1..467
                     /locus_tag="VE223_04990"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZC20978.1"
                     /translation="DKGYQRVYDMCVEYDAPVMIHTGDTFSNTAKIRFSHPLTVDDIA
                     VDNPELKIVMCHLGNPWIVDCQEVIYKNRNVYADISGLFIGDFTQSVKSYYVNKIKEL
                     LSYVGDPHRILYGTDWPISDIESYIKLVQSLNLDQRESDLLMFGNAKKIFRL"
     gene            complement(1126..1413)
                     /locus_tag="VE223_04995"
     CDS             complement(1126..1413)
                     /locus_tag="VE223_04995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20979.1"
                     /translation="MLKDDIKTGKNAEYAYIVQTQEIWFIDYIIGIAFIAPIDFREGL
                     LKSGRPYKEFNDIKDFQDYMDETFGHEIEFESSVDPTTMQEQTYSRRIIRY"
     gene            complement(1650..2327)
                     /locus_tag="VE223_05000"
     CDS             complement(1650..2327)
                     /locus_tag="VE223_05000"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20980.1"
                     /translation="MSEIGAIGINNSRYPYYYGPEGRLVLVDSALEAVNRGSTTIGIK
                     TPMFALISSHIKPTKPLVEPAEKIFTIDGHVGATGSGYIGDILQLIDEIRLAAQKHRL
                     TYESPIDISSLAKHLGSYLHNYTIYAVRPQAASVIIAGIDQAGVQLFQVDPSGTFLKG
                     AGFAIGQYSDIALDVIQREYSADMTMEQASHLSNKAIEKALGERPLVETGVITAKDGY
                     FKKLANN"
     gene            complement(2327..2911)
                     /locus_tag="VE223_05005"
     CDS             complement(2327..2911)
                     /locus_tag="VE223_05005"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HZC20981.1"
                     /translation="MTTIVGIRTKEGVVLGSDKRASKGFFIGSKITQKIAKIDDTLAV
                     AIAGQLSDAEYMIKVAKAERRLMELRRGFQLSVKESARLIANLAYSGLKNYQPYFVEL
                     IVAGVDREGSHIFAADMSGAITSEDFASSGSGSPIAYGVLESVYHKDITNEQAKEIAT
                     RAVSAAMERDPGSGNGIDVLVIPNLVIVKQEAMS"
BASE COUNT          913 a          612 c          556 g         1110 t
ORIGIN      
        1 acgataaagg atatcaaaga gtttatgata tgtgtgtaga gtatgatgct ccggtaatga
       61 ttcatactgg agacactttt tcaaatactg caaagatcag gttttctcat ccattgaccg
      121 tggatgacat tgctgttgac aatcctgagc taaaaatagt tatgtgccat ttgggaaatc
      181 cttggatagt tgattgtcaa gaagttatat ataaaaacag gaacgtctat gcagatattt
      241 ctggtttgtt tattggcgat tttacgcaat ccgttaaaag ttattatgtg aataaaataa
      301 aagaactact gagttatgta ggtgatccac accgtatatt gtatggaact gactggccta
      361 ttagcgatat tgaatcctac atcaaacttg tccaaagcct aaatctcgat caacgagaat
      421 ctgatctact tatgttcggt aatgcgaaga agatttttag attatagtgc tcagcattat
      481 tttaacctct ggcatgacaa ccattattgg ctactctttt aattctatta gtgggtatgt
      541 tccttgagtt cttgtcgaga gttaaatctt tttccacaag tctcacaact gaaggttgca
      601 tttacatcag aggctgattc gtcagatttt tcaccagtat ctttatagtt gctcattatt
      661 actatctaca ttatatgata tttaacggat aatgatttgg atttgccata aaatgagcat
      721 tagtatatag aataccattg taatggttgc aatagacgtg atattgagtt gttctatatg
      781 atcaaatcta tcataaaata ctatagagtg tgctctatct taatatgact atattgcatt
      841 gactgcaaat gttatttggt cacttaggac acaattcatg ctctagtgaa tcgatagtca
      901 cctcttctat ttttatttta tctttgttga cagcatttta ctccccggag catgtaagga
      961 taatttacgg ttgaatggac tagtgtgtta acagaggttg acgcatttcg agaactatga
     1021 acatttgttc ttgtgagttg agactagaac gctggcggtt gatgcgaatc gttaaacgga
     1081 aaaagtctaa agttgttgct ttacgacttt ttacgattct ttttcctaat atcggataat
     1141 tcttctactg tatgtctgct cttgcattgt tgtgggatct acagatgatt caaattcaat
     1201 ctcgtgtccg aacgtttcat ccatatagtc ttgaaaatcc ttaatatcgt tgaattcttt
     1261 ataaggtctg cctgacttta gcaatccttc tctaaaatct attggtgcaa tgaaagcaat
     1321 cccaattata taatcgataa accaaatttc ctgagtctga acaatataag cgtattctgc
     1381 atttttacct gttttgatat catccttgag caatatctgg aaatacactc catttaaatg
     1441 aaatattttt caaaattgtc ttcggcattc tccaaggtgc cttcatattg gtccgatcag
     1501 ccctcatatt cctagtcata tttgtgaagt atacatgaat ataacaagaa ttcttatgta
     1561 agcattactg tcttgtgaaa cagaataaca gctaagcttc ttcgatctct agtgacaaaa
     1621 attttctagt aaactgaaat atgagatggt taattatttg ccaacttctt aaaataacca
     1681 tccttagctg taataactcc cgtttctacc aatggtcttt ctcctaatgc tttttctatt
     1741 gctttattgc ttaaatgact agcctgctcc atagtcatat ctgcgctata ttctctctga
     1801 attacgtcaa gagcaatatc tgaatactga cctattgcga atccggctcc ttttaagaac
     1861 gttccgctag gatccacctg aaacaactgg actcctgctt gatctattcc agcaattatt
     1921 acagaagctg cttgcggtct gactgcataa attgtataat tatgtaaata ggaacctagg
     1981 tgcttagcaa gcgaactgat atcaattggg ctctcatatg taagtctgtg cttctgtgct
     2041 gctaacctga tttcatcaat tagctgtaat atatcaccta tgtatcctga gccagtagcg
     2101 cctacatgtc catcaatagt gaatatcttt tcagcaggct ccactaaagg tttggtaggt
     2161 ttgatatgac tcgaaatcaa agcaaacatg ggtgttttga taccgattgt agttgagcct
     2221 ctgttaacag cttctaatgc actatctact aatacaagtc taccttcagg accatagtag
     2281 tatgggtatc tgctattatt gatcccgata gcaccaattt ctgacactaa ctcatcgcct
     2341 cctgtttaac tattactaag tttggaatta ctaagacatc gattccattt cctgatcctg
     2401 gatctcgttc cattgctgcc gatactgctc tagtggcaat ttcttttgcc tgttcgtttg
     2461 ttatgtcttt gtgatataca ctctcgagaa cgccataagc tataggcgaa ccagaaccag
     2521 aggaggcaaa gtcttcgcta gttattgcac cactcatatc tgctgcaaat atatgactgc
     2581 cttctcgatc tacccctgcg actatcaact ctacaaaata cggttgataa ttcttaaggc
     2641 cagaatatgc aaggtttgct atgagcctag ctgactcttt tactgaaagt tgaaatcccc
     2701 tgcgtaactc catcaacctc ctctcagctt ttgcaacttt aatcatgtac tctgcatctg
     2761 atagctgtcc tgctattgct actgctagag tatcatctat ctttgctatc ttttgggtta
     2821 tctttgaacc gatgaaaaag cccttactag ctcttttatc tgatccaagc acaacacctt
     2881 cttttgttct aataccaact attgttgtca ttaattgttt ttcctctacc tatagtatca
     2941 tatcgtagca tggatattta ttgactagga ttcatggaac tttgtcacac agattgtgaa
     3001 tactagaaga gtaagtatta tttcatctat tgttcttcct aagaaggcaa tattgtctca
     3061 taaggcttgc atctacgaga cttatttgct tactttgtag tacataaaaa gtaaagatta
     3121 ggttcggtag gctatccaaa aatgtggtat ctgctataat caagcgaggc agtagtaagt
     3181 acaaatgtga t
//
LOCUS       DASQSJ010000252         3671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_531548, whole genome shotgun sequence.
ACCESSION   DASQSJ010000252 DASQSJ010000000
VERSION     DASQSJ010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531548"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            372..1082
                     /locus_tag="VE223_05010"
     CDS             372..1082
                     /locus_tag="VE223_05010"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HZC20982.1"
                     /translation="MEEDYRKYGGINGTVIIAEHQRRGKGRHVENKWISPRGGIWLSV
                     ILLPKINTSQSTFLPLCSAIAACDIINEQTNLSAKIKWPNDIVVRGKKVSGILVNTST
                     VGEKINYAVIGIGINANIEPSAITSSIASNGSNYSECLLGYTGVTSLQNELSNTNIDV
                     TLMIQLLLEKLEHYYLELETDGPANIRHEWKKRADTLGKAVKIRTQKGIIEGIAIDID
                     NNGILLVKTYDGNVHQLI"
     gene            complement(1159..1305)
                     /locus_tag="VE223_05015"
     CDS             complement(1159..1305)
                     /locus_tag="VE223_05015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20983.1"
                     /translation="MSNTNASEENAESPSTYGKDAYTEYRKDKKQEKNRDPKEFEGVE
                     SGDQ"
     gene            1641..2057
                     /locus_tag="VE223_05020"
     CDS             1641..2057
                     /locus_tag="VE223_05020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20984.1"
                     /translation="MAITDWERITITFRTKCKECRKDILPGDAFWSTSAKAAKHMICN
                     NSTIPNSTGTLIQDLRAGTDLKAVREIATNEPKCYICCGKAGCIECEHLAKCEQRMVS
                     KYCICKSCSKDEESFNKYKQGFLIKVSKYLICITKG"
     gene            2153..2932
                     /locus_tag="VE223_05025"
     CDS             2153..2932
                     /locus_tag="VE223_05025"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC20985.1"
                     /translation="MSLLLKDKIAVVTGSTRGIGFAIAREFAENNSATTIVCSRLKEK
                     AQEAISQMGGRVFAAEIDVADDASVKKFMDQTLSKHGRIDVLVNNAGYPFDSHVWYKR
                     FHDVTEEEIHKIIEVDLKGSVRLSRAVICSMLQKNASKAKEGGVIINISSTPAISGHI
                     HGAPYTIAKAANIALTKCIAMEYGSNNIRAYTLALGNIATLATYDSMTEEERNIAALE
                     PSMKRWGKPEEVAKIAASIASDNFAYATGNTIVIDGGTVLW"
     gene            complement(3164..3376)
                     /locus_tag="VE223_05030"
     CDS             complement(3164..3376)
                     /locus_tag="VE223_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20986.1"
                     /translation="MKHHKKEYTSSKQQNVNMLGDTTAMLGKDILTLTFNIDVAKYLN
                     FKHNESLTYEISKNQLIIKKKDEEVV"
BASE COUNT         1223 a          629 c          717 g         1102 t
ORIGIN      
        1 aattcgaaga gaaagtaaaa gcacttattc acacctcgta ggagcacgca tccctcgatt
       61 cgctttagct ctaattgtga catgacgtta cccttattac agaagtgttt ccacctttgc
      121 agtattatat tatgaggtca tcctgcaact cggctttggg gtcatcagaa gtaccgttta
      181 tatgagcata acaagttatt aattatacga ttgtttgccc aagccactca tcaataccgt
      241 gggaactgag acggaactta cgtacacgga taatcggtaa aaatatctat tattacaagc
      301 aaatagattc cacccaagtt actggaattt ccatagcgga aaagaactca tcattactaa
      361 agaataataa aatggaagaa gattatagaa agtacggggg tataaatgga actgtaatta
      421 tagcggagca ccaaagaaga ggaaaaggaa ggcatgttga aaacaaatgg atttcaccca
      481 gaggtggaat ttggttatca gtaatcttgc taccaaaaat aaacacttct cagagtacat
      541 tcttgccttt gtgttctgct atagcggcat gtgatataat taacgaacaa acaaatttga
      601 gcgcgaaaat taaatggcct aatgatatag tagttagagg gaaaaaagtt tctggtattc
      661 tggttaatac aagtactgtg ggcgaaaaaa ttaattacgc agtgattgga attggaataa
      721 atgcaaacat agagccttca gcgattactt catcaattgc atctaacggc agcaattatt
      781 ctgaatgcct attaggttat actggggtta cctcattgca aaacgaattg tccaatacaa
      841 acattgatgt tacccttatg atacaattgc tgttagagaa attagaacac tattatcttg
      901 aacttgagac tgatggacca gctaatatta gacacgaatg gaaaaaaaga gcagacacct
      961 taggaaaagc tgttaaaata agaacgcaaa aaggaattat tgagggcatt gctatagata
     1021 ttgataataa tggaatattg cttgtcaaaa catacgatgg caatgttcat cagctaattt
     1081 gatttagtta aagttatcac tatgatctat gaactaatga gattacatag cagattgccg
     1141 ctcgtcattg aaatgcaact actggtcccc agattctaca ccttcaaatt cttttgggtc
     1201 tcggtttttt tcttgcttct tatcttttct gtactctgta taagcatcct ttccgtatgt
     1261 tgatggggac tctgcgtttt cttctgacgc attggtatta ctcataaaat agagtaattc
     1321 ctcataggtt atatacctaa tagatagatt tactcactgc gagtcaaata acctttggtc
     1381 tgtgctccaa ttccatttac aaaggtcaac attacagtcg gagtgcccgt actatatgtc
     1441 tgcagatatg tcagactgtc gtgcaggaca ctaacgcata gattcaatgt ttaaaagcgc
     1501 tatcgagaag tttaccgcgt tccctttcaa gttaagacag tcgcttacct cggctaatga
     1561 actaataaac tttattttct acttagcaaa tggttactcc cttattttaa aagattcttt
     1621 ttagtaaacc ttgattaaag atggcgataa cagattggga acggattact attactttca
     1681 gaactaaatg taaggaatgt cgcaaagata tactaccggg agatgcattt tggtctactt
     1741 ctgcaaaagc tgctaagcat atgatttgca ataatagtac aattcctaat tcgacaggca
     1801 ctcttattca agatcttagg gctgggaccg atctcaaagc cgtaagagag attgccacta
     1861 atgaaccaaa atgttatatc tgctgtggaa aagcgggttg tattgaatgt gaacatttag
     1921 ctaaatgcga gcaacgtatg gtttcgaaat actgtatctg caagagctgc agcaaagacg
     1981 aagaatcgtt taataaatac aagcagggct ttttgattaa ggtatccaaa tatttgattt
     2041 gtattacaaa aggatgagga atgaagaaga aggtacagta tcccagaaaa agttaacatt
     2101 ggttataaat attcaatact gagaggcgat aagaaagaag gttcataata gaatgtcatt
     2161 gttactgaag gataaaattg cagtagtgac tgggtctacc agaggtatag gatttgcaat
     2221 agcaagagag ttcgcagaaa ataacagtgc gacaactata gtttgttcta gacttaaaga
     2281 gaaagcacag gaagcaataa gccagatggg cggtcgagtc tttgctgctg aaatcgatgt
     2341 tgcagatgat gcgagtgtca aaaaattcat ggatcaaaca ctatcaaaac atggaaggat
     2401 cgatgtttta gtaaacaatg ctggttatcc ttttgatagt cacgtttggt ataaaaggtt
     2461 tcatgatgta acggaagaag agatacacaa gattatagaa gttgacctta aaggttcagt
     2521 aagattatca agggccgtta tttgttctat gcttcaaaaa aatgcaagca aagcaaaaga
     2581 aggaggagta ataataaata tttcttcaac tcccgctatt tccggccata tacacggtgc
     2641 tccatatact atcgccaaag ctgcaaacat agcattgaca aaatgcattg ctatggaata
     2701 tggatctaac aatattcgag cttatacgtt ggcactcgga aatattgcaa cgttggcaac
     2761 atatgattct atgaccgagg aggagagaaa tattgcagct cttgagcctt caatgaaaag
     2821 atggggcaag ccggaggaag tcgccaagat cgcagcatct attgcaagtg ataattttgc
     2881 ctatgcgact ggtaacacca tcgtaataga tggtggtacc gttctatggt aataatacat
     2941 gatttagtgt ttgtgagata ggcattatgt tcttcgttcc tagttccagg ggcctatgcg
     3001 atttagtcga tggtaataca tacaagacca tgaccatctc attggacttt tattttaaac
     3061 agtagcaagc atcttatagt attgagatat tagtattctc gtttttacac tcgctgactt
     3121 tcatgatgtt tatagtttct agtatgaaaa tttttgatca gccttaaaca acttcttcgt
     3181 cctttttctt tatgatcaat tgattcttag atatctcata agttaacgat tcattatgct
     3241 taaaattgag atattttgct acatctatat taaacgtcaa agtaagaata tcttttccaa
     3301 gcatggccgt agtgtctcca agcatattaa cattttgttg ttttgatgaa gtatattctt
     3361 ttttgtgatg tttcataata tgtttatatc aacaatccca taaatacatt gagaatcaaa
     3421 gattacgatc ttatcgtatc gcttacagga catttgtagt attaacgaaa ggatggcata
     3481 aaatggcagt ccaattgctc ccgatcaata ctagtattac tgaaagtgat aatccaaagg
     3541 ctaataagaa ttatcgaaag aaagatagca gactagccaa agctcgatta tactttccta
     3601 ccgaagccca ctactgatcc agcagcaaca aacatagaac gggatattcc tatacctacc
     3661 gcaagcttct t
//
LOCUS       DASQSJ010000253         2635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_229058, whole genome shotgun sequence.
ACCESSION   DASQSJ010000253 DASQSJ010000000
VERSION     DASQSJ010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2635
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229058"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            366..1178
                     /gene="lsrF"
                     /locus_tag="VE223_05035"
     CDS             366..1178
                     /gene="lsrF"
                     /locus_tag="VE223_05035"
                     /EC_number="2.3.1.245"
                     /inference="COORDINATES: protein motif:HMM:NF006081.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-5-phosphonooxypentane-2,4-dione
                     thiolase"
                     /protein_id="HZC20987.1"
                     /translation="MKNRMSKVIRPRDGRCVMLAVDHGYFLGPTEGLEVPSKTIRPLL
                     SYADSLMVTRGVLRTSVNPSTDVPIVLRVSGGSSIVGEDLSNETITNSVEDAIRLNAV
                     CLALSIFVGSRYEHQTLSSLAKLVDEGEKYGIPILAVTAVGKEMSRDARYLSLACRVA
                     AELGAHVVKTYYCENFEKVVEGCPLPIIIAGGKKLSKELDVLELAYNAIRKGASGVDM
                     GRNIWQSDSPVAMIKALRAIVHKDLDVKEAHDILLKEKNRESQQHKIIRSFP"
     gene            1314..>2635
                     /locus_tag="VE223_05040"
     CDS             1314..>2635
                     /locus_tag="VE223_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZC20988.1"
                     /translation="MESNSCDVLITNGTVVIPKVGIFQKHILIENGKIKDLRKSIDNI
                     QASKKIDASQKYVLPGVIDPHAHYGVYTPINEAAKTESRSAAVGGVTTMVRMLRLYES
                     YRNIGKHLTASKGNHHIDYAIHASILTPDQLKDIPYLKNIGISSVKVYMNLGSDLRHI
                     SMDLDPGTYDITDGEVNMTDEFLVSIINEAAKVDSTVLLHAENPVVCSERISKRKEQE
                     IQNGTATTAKLKLWCDCRPPSSEAESIIKVTRFASNVCSKLYFVHIGSTLALNTILAE
                     KQKRPSSLYIETCPHYLTHTADFNNITGKVVPPLRSKRDIQNIWSALQNGNIDTIGTD
                     HVANRLSMKIGHGDLWTALAGFPGIATMLPVLLSKGVNEDRISIERVSEVTSYNTAKI
                     FGMYPKKGTIQQGSDADLIIVDLDLEQKVTPEILQSYSDYTIYDGWRMR"
BASE COUNT          922 a          427 c          535 g          751 t
ORIGIN      
        1 actatcgcta ggcatctatt gatagatagc tattgatatt gtcacaagac gtggctatag
       61 aacggttggc agtcataccg ggataaactt agatatagac aaaatatttc atttctacga
      121 atgccgttgt tgatgctttc gatctttgga aaattaggaa ataatcaaag tatgtttcct
      181 ggcgtttgag cttgtaccat atattgacat taatacatat taatcattaa tattaatgat
      241 taaatcttgg ctactgtatc tatatgcatc catgagtata ttagtaatac atctatggca
      301 tttaaagtat aaataataac agaaagaaca tgaaaagagg ttatatttag tagatggctt
      361 ggggtatgaa aaacagaatg tcaaaagtca tccgtcctag agacggtcgc tgtgttatgc
      421 ttgcagttga tcatgggtac tttttgggtc caacagaagg gttggaggtg cctagcaaaa
      481 cgataagacc acttttatca tatgctgact ctttaatggt tactagagga gttttacgaa
      541 cgtctgtgaa tccaagcact gatgtgccaa tagttttgag ggtttctggt gggagtagta
      601 ttgttgggga agatttgtcc aatgaaacta tcacgaattc ggttgaagat gcgatcaggc
      661 ttaatgccgt atgcctagct ctttcaattt ttgttggaag caggtatgaa caccaaacac
      721 tatcaagttt agctaagctg gttgatgaag gtgaaaaata tggtattccg atcctagcag
      781 ttaccgcagt tggtaaggaa atgtccagag atgctagata tcttagtttg gcatgcagag
      841 ttgctgcaga attaggtgca catgttgtta aaacatacta ttgtgaaaac tttgaaaaag
      901 ttgtagaagg atgccctctt cccattataa tagcaggtgg caaaaagtta tcgaaagaac
      961 ttgacgtact tgaattagca tataacgcta tacgaaaagg tgcctcggga gtagatatgg
     1021 gtagaaacat ttggcaatca gattctcctg tcgcgatgat aaaagcacta agagctatag
     1081 tacacaagga tttagatgtt aaagaagctc atgacatcct attaaaagag aagaatagag
     1141 aatcccaaca gcataaaatt ataagatcat tcccctaatt ttataactcc agaacctgtc
     1201 gttgaaggcg actctatgat aaggatatct taaaatagta taaatccctt tccaagatct
     1261 agttataact aaaagattaa acatgagatt ttataagtta attaccaaaa ataatggaaa
     1321 gtaactcctg cgatgtatta ataacaaacg gtaccgtagt tattccaaag gtaggaattt
     1381 ttcaaaaaca tatcttgata gaaaacggca aaatcaagga ccttaggaaa tcaattgata
     1441 acattcaggc ttcaaagaag attgatgcaa gccaaaaata tgtattacca ggagtaatcg
     1501 atccccatgc tcactatgga gtttatacgc caataaacga ggcagctaaa accgaatcaa
     1561 gatctgctgc agttggagga gttactacta tggtcagaat gctaaggttg tatgaaagct
     1621 atagaaatat cggaaaacat ctgacagcaa gcaagggtaa tcatcacata gattatgcga
     1681 ttcatgcatc aattttaaca cccgatcagc taaaagatat tccatattta aaaaatatcg
     1741 gtattagctc agttaaagtc tatatgaact tggggtcaga tctcaggcat atttctatgg
     1801 atcttgatcc aggtacatac gatattactg atggagaagt taacatgacg gatgaatttc
     1861 ttgtttcaat aataaacgag gcagctaagg tagattcaac tgtactgttg cacgcagaaa
     1921 atcctgtggt atgctcagaa cgtatcagta aaagaaaaga acaagaaata cagaatggta
     1981 cagcaacaac agcaaaatta aagctatggt gtgactgtag accaccttct tcagaggcag
     2041 agagcataat taaggtaacg aggtttgcaa gcaacgtgtg ttcaaaatta tattttgttc
     2101 atataggatc aactcttgca cttaatacaa tattggcaga aaaacaaaaa agaccttcta
     2161 gtctatatat cgagacatgc ccacactact tgactcatac tgcagacttt aacaatatta
     2221 cgggcaaagt tgttcctcct ctgagatcta aaagagatat tcaaaatata tggtcagctt
     2281 tacaaaatgg aaatatcgat acaattggga cagatcatgt agctaataga ttatcaatga
     2341 agattggtca tggagatctc tggacagcac ttgcaggttt tcctggaatt gccaccatgc
     2401 ttccagtttt gcttagcaaa ggagtaaacg aagatagaat cagcatagaa agagtgtcag
     2461 aagtcacaag ctataataca gctaaaattt ttggcatgta tccaaagaaa ggtactatac
     2521 aacaaggctc tgatgcagac ctaataatag tggatctaga tttggaacaa aaagtcacac
     2581 ctgaaatttt gcaatcttat tctgactata cgatttatga tggatggaga atgcg
//
LOCUS       DASQSJ010000254         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_508664, whole genome shotgun sequence.
ACCESSION   DASQSJ010000254 DASQSJ010000000
VERSION     DASQSJ010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508664"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(711..863)
                     /locus_tag="VE223_05045"
     CDS             complement(711..863)
                     /locus_tag="VE223_05045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20989.1"
                     /translation="MIPDLAGEKVAATKDKAHLPVHTPPKSLTKIAGRLMSAVELERK
                     GPKRMQ"
     gene            1891..2091
                     /locus_tag="VE223_05050"
     CDS             1891..2091
                     /locus_tag="VE223_05050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20990.1"
                     /translation="MMVIFFLVGFGPFFDSISFNILGRHERRKAASLGIANAYLLWWL
                     KIFHGSSIDGGYHSITILRKVF"
BASE COUNT          609 a          398 c          397 g          775 t
ORIGIN      
        1 gatagttgcg cagaatgcgg taaaattggc gacaagttct ctctttattt tactctgcat
       61 ttgcgtttca aactagaaga aaacatacat aggtttgtca aacactggat taaagaacac
      121 ggttagtttc ctgaaatccg cacatgccaa aaagatgtga ggcaaatgat tgacctctac
      181 caacaatcaa attaaatttc aattgatgtt acagaatagg tctgaatata aattttgatt
      241 agtcttaatt gggaacattc gattattcat tttccttgca ccgctgcagc cagttgatat
      301 caccggaagc tcctcttata gacgcaacgg aaaaggcata gtaaccgacg gaggacttgt
      361 ttattcccct agggagaatc ggccttttta atataatatt cttgttgcct tttttattgc
      421 acctttcata ttgttgtatt attgttattt atgtaacata ttgctcttca atattattaa
      481 ttgccttgtc atggatcgtc gtcctagtta ttgtgcttcg tcactcgtaa caacagaaag
      541 cctcaatttc aggccacagt tgtgtaatta tctcaggggt atttgtcttt gcattctgcc
      601 atagattttt cttcacttag gttgacctaa tagagatatt gcttcctcta atttcatcaa
      661 atgtgccatt cggattagca tatcataaag tataatgtcg gtattctcca ctactgcatc
      721 ctctttggcc ccttccgctc taactctaca gccgacataa gccttcctgc tatctttgtt
      781 agcgatttag gaggggtatg aactggcaag tgtgctttgt cctttgtagc agcaactttt
      841 tctccggcaa gatctggaat caattacttc aatctatcct gttgttccct tgtctcttct
      901 aagtgaagct caagtctctg ttttgcattt tctatttttg tctgcttatc tttcattgcg
      961 gcctttgtac tcccatgttt ttcgatctat aaagattcat ctaagtaaaa ataatttgtg
     1021 cttaacagta atttgtttta gtctacttga aatgtaagga ttatttcttt gtctcttcct
     1081 gttacgtggg gccatcttcc tttgtttcag tattgattat acatagcttt agcataatga
     1141 tctggaagtt ccaacaacta tccccaagat agtgtaattg gtgagagggg aggataccaa
     1201 cgtgatatgc ggtcaggagg ttatgggttt actttagatt ctaagcaaaa tcggcgttga
     1261 tatctcaaca atctacttaa tgcgtcctaa aagacggtac catatggtct accgttggca
     1321 ggaccctgaa gttgcctgtt aatgtttgca tgaatatcga tcaaatagat catataagat
     1381 aatatatatt gctaacttat tttatcaaac taatttatct gtcttattat ttcatcattt
     1441 cattattgtg aggaatgata aagccatacg acctatttgt aataagaatt gattgagcat
     1501 tcagagatgc actattgaat atgcaaaatg attataataa agcaatttgc aaataatccc
     1561 cctgttttga ggttggattc agacctttct ttgaaatcga agaagaatag acactaatta
     1621 attggacaaa atgatattac ttttgtcttc cttcccacct tacccgaggc aagaagtaga
     1681 gtataactcc gaattattac gaaaaacacg gatatctttt attgtgtctt ctggtttgat
     1741 gatagtattt gcagtaagtt atagttatct tgaataatat tatatctatg attcagtcgt
     1801 acaaaaaact tttaacctta cggtaaaggg tggcactcat cgtgcagcca ccccataata
     1861 ggcggacttt actcttgcta actatatcca atgatggtaa tcttctttct tgtgggtttt
     1921 ggtcctttct ttgacagtat tagttttaat atacttggta gacatgaaag aagaaaagcc
     1981 gcatcactag gaatagcaaa tgcgtatctg ctgtggtggt tgaagatatt tcatggttct
     2041 tctatagatg gtggttacca ctccataacg atcctaagga aggttttttg atgcaagcct
     2101 cagattggac gactgagaat tagggatata tctatatcac atactagtct ctttggtagc
     2161 ttcgttatgt cttatttgt
//
LOCUS       DASQSJ010000255         3430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_110952, whole genome shotgun sequence.
ACCESSION   DASQSJ010000255 DASQSJ010000000
VERSION     DASQSJ010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110952"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(137..490)
                     /locus_tag="VE223_05055"
     CDS             complement(137..490)
                     /locus_tag="VE223_05055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20991.1"
                     /translation="MVKRASRQVRQLTEIDLLSEYRTSQQQLCLKTLSIHNYLQLAEL
                     KRSISDKNEPIILIARITPIMLDNPEDGHKLLNELYLIAMKNNYSIFRLGEERIILAP
                     IEVQVKKDNEVMNKE"
     gene            complement(626..2041)
                     /locus_tag="VE223_05060"
     CDS             complement(626..2041)
                     /locus_tag="VE223_05060"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HZC20992.1"
                     /translation="MRIVMKFGGTAINSADKVIHVANIIKSQKEGNNDVVVVISAMRG
                     MTDELLDMSEDIKKGDKVSIASFLKNTTESHLGIIDLAVKDVKLKNEAKYTITTLLEE
                     LKDILGGIVLLTEITPRSLDYLMSFGERLSTPIVSFVLRDLGMAAEHLTGKEAGILTD
                     SNFGEARPLMDTTKLRLVHKIEPLLKANVIPVITGFIGADQHGNTTTIGRGGSDYAAT
                     IISAGINADEVWLWSDVDGLMTADPKIVRDATVIKEVSFAEAMEMALFGAKYMHPRAL
                     EPVIDTKIPVRIRNTFNLQHEGTLISRDLPKESQRIVKSITAIRHTALIDVGGGGGMV
                     GAPGMAAKIFSALAKNKVNIMMISQSPSESSISMVVRKNDLDKAITTLDLNLLGKVVK
                     QVSLNDDVAVVAVVGSGMRGIKGVAARVFNAVAKRNVNVIMIAQGSSELNLAFVVKDS
                     DCEQAVRALHDEFELAKIRLD"
     gene            complement(2073..2825)
                     /gene="pcn"
                     /locus_tag="VE223_05065"
     CDS             complement(2073..2825)
                     /gene="pcn"
                     /locus_tag="VE223_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030337 - DNA polymerase processivity
                     factor activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proliferating cell nuclear antigen (pcna)"
                     /protein_id="HZC20993.1"
                     /translation="MVFLAKTKSPDEWKAVTSAISTLVDEATFEATKEGVSFRGMDPS
                     HVALIDIHWPNSAFQTYDCDATIKFGVRVDEFSKLVRRADKKDAMEVTVGNDSMLHIK
                     ISNSYTKEYKMRLIEGSSSSTPLPKLNFNSKVVLTASAFDKILSDVQVVSEYISIESK
                     HKQVQFLGKGDSGEADITIESGVEGLEELEVQEDSKATYSLDYLSKITKAVSTAGGSV
                     AAEYSTKMPLRLEFRVANIGRIHFYLAPRVQD"
     gene            complement(3027..3368)
                     /locus_tag="VE223_05070"
     CDS             complement(3027..3368)
                     /locus_tag="VE223_05070"
                     /inference="COORDINATES: protein motif:HMM:TIGR01384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor S"
                     /protein_id="HZC20994.1"
                     /translation="MRFCPNCETRMKPRIEQGVVLCPKCGFTAEKDQHEPLSKTKKLM
                     ASAENNSGSSLKIMDSDNVPSALPTTTVDCPKCGNNVAFWWMLQTRSADEATTQFYRC
                     TECGHTWRNYS"
BASE COUNT          953 a          742 c          568 g         1167 t
ORIGIN      
        1 atgatgttct aaattccaat tgtcaattgt tcttctcgac gcttgtgaca atactatttc
       61 tttaattata tggttgtatt atagcataag aaattctttt gcttaaaatg cctttcgtta
      121 tcattagtca actgctttat tctttattca taacctcatt gtctttcttt acttgcacct
      181 caattggggc tagaataatt ctttcttctc ctagtctaaa gatagaataa ttatttttca
      241 ttgctatcaa atacagctcg ttcaataatt tatgtccgtc ctctggatta tctaacatta
      301 taggtgtaat tctggcaatc agaataattg gctcgttctt atctgagatg cttcgcttta
      361 gctcggctaa ctgcaaatag ttgtggatag aaagggtctt taggcatagt tgttgttggc
      421 tagttctata ttcgcttaat aaatctattt ccgtaagttg tcttacttgc ctactggcac
      481 gctttaccat tctgcaaata tattaatctt tgatataaaa aaacatatca attcatccat
      541 cttgacaatt ggctaaatag agaactaatt tatataacat ctgatatgat aattctaata
      601 ttacaatagc ataatgtcaa cattgttaat ctaatcgaat cttagctaat tcaaactcat
      661 cgtgtaacgc tctcacagct tgttcgcaat cactatcctt aacaacgaaa gccaagttca
      721 gctctgatga gccctgtgca atcattatga cattgacatt tctctttgca actgcattga
      781 aaacccttgc cgctactcct tttattccac gcatgccgga tcctacaacg gctactactg
      841 caacatcatc attgagactc acttgtttta caacctttcc gagcagattt aaatcgaggg
      901 tcgttatagc cttatctaag tcattctttc tcacaaccat ggaaatacta gattcagacg
      961 ggctttgcga aatcatcata atattcacct tatttttcgc tagcgcggaa aagatcttag
     1021 cagccattcc aggagccccg accattcctc ctcctccgcc aacatcaatc aaagcagtat
     1081 gacgaatcgc agtaatagac ttaactatcc tttgtgattc tttaggtagg tcccgcgaaa
     1141 taagtgttcc ttcatgctgc aagttgaagg tatttcttat tctaactgga atttttgtgt
     1201 ctatcactgg ttcaagggct cgaggatgca tatatttggc accaaataaa gccatttcca
     1261 ttgcctcggc aaatgatacc tctttaatta ctgtagcgtc cctgacgatt ttaggatcag
     1321 cggtcattag tccatctaca tcactccaca accatacctc gtcagcattt atacctgcag
     1381 aaattattgt agcagcataa tctgagccgc ctctacctat tgttgtagtg ttgccatgct
     1441 gatctgctcc gatgaagccc gttattacag gtataacatt tgcttttaat agcggctcga
     1501 tcttatgtac cagtcgaagt tttgtagtgt ccattagcgg ccgagcttcg ccaaaattag
     1561 agtcagttaa gattccggcc tctttgccag ttaaatgttc agcggccatt cctaaatcac
     1621 gcaatacaaa tgagacaatc ggagtggaaa ggcgctcccc aaatgacatt aaataatcca
     1681 aagatctcgg cgttatttct gttaggagaa caatgcctcc taggatatcc tttaattctt
     1741 caagcaatgt agttattgta tatttagctt cattttttaa tttcacatct ttaactgcta
     1801 ggtctataat acccagatga ctctcagtcg tatttttgag aaaacttgcg atcgaaactt
     1861 tatcgccttt tttaatgtcc tcggacatat ctaatagctc atccgtcatt ccacgcatag
     1921 cagaaataac tactacgaca tcgttatttc cttccttttg tgattttatt atgttggcaa
     1981 catgaataac tttgtcggcg gaatttatcg cagttccacc aaatttcata acgatgcgca
     2041 tgattaaatc atctacgctt tatctttaga tttcaatctt gaacccttgg tgcgagataa
     2101 aagtgtatcc ttccaatatt tgccactctg aactctaatc taagtggcat tttggttgaa
     2161 tattcagccg ctactgatcc accagctgtg ctcacagctt ttgtaatttt ggatagataa
     2221 tctagactgt atgtagcttt gctgtcttct tggacttcta gttcttccaa tccttcgact
     2281 ccggattcta tagttatatc cgcttcgcct gaatcacctt tacccaaaaa ttgtacctgc
     2341 ttgtgctttg actcaattga aatatattca gaaactacct gaacatctga gagaatttta
     2401 tcgaatgcac tcgcagtcaa tactacctta gaattgaaat tcaactttgg taatggagta
     2461 gaactggagg aaccctcaat tagtctcatt ttatattctt ttgtgtaact attggaaatt
     2521 ttgatatgga gcatactatc atttccgact gtaacttcca ttgcatcttt cttatcagcg
     2581 cgtcggacaa gctttgagaa ttcatctact ctcactccga attttattgt tgcatcacag
     2641 tcatatgttt ggaatgcaga gtttggccag tgaatatcta taagtgctac atgtgatgga
     2701 tccattcctc taaacgatac gccctcttta gtagcttcga atgttgcctc atctacaagg
     2761 gttgaaattg cagatgtcac agctttccac tcgtcaggcg acttagtctt agccaggaat
     2821 accaaactat ctcaatgatg tgcctaacat ttacagattt taaacattac tatcattgat
     2881 tagttgaatg gtgatgcctt cctcggaata ctgatctttg gtatttcacg acattgtgct
     2941 atcaacacaa tttttaatat ccagtagaaa ataatcccaa atcgaattca tagcattagt
     3001 gaaggaaacg gggaaaagga aggaagtcaa gagtaatttc tccatgtgtg cccacattcc
     3061 gtacatcgat aaaactgtgt agtggcttca tcagctgatc ttgtttgcaa catccaccag
     3121 aatgcaacat tatttccaca ttttgggcag tcaacggttg ttgttggtaa agcactagga
     3181 acattatccg aatccataat tttaagcgag cttccagagt tattttccgc cgatgccatt
     3241 aatttctttg tcttagataa aggttcatgt tggtcttttt ctgctgtaaa accacacttt
     3301 gggcataaca caacaccttg ttcaatccta ggcttcattc gtgtctcgca attaggacaa
     3361 aacctcaaaa acgacgacct cttatcattt cttcaatttt tcttttagtg tgctcgccaa
     3421 atcttcagca
//
LOCUS       DASQSJ010000256         3286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_413509, whole genome shotgun sequence.
ACCESSION   DASQSJ010000256 DASQSJ010000000
VERSION     DASQSJ010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413509"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            297..575
                     /locus_tag="VE223_05075"
     CDS             297..575
                     /locus_tag="VE223_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20995.1"
                     /translation="MIFIVIAILIGHIRSREYCNSIGRDYRKEKPCTIRESEDEASKV
                     LAQNKRNDKTIEQHTQYLVNEIVIGTLYFSCRSAFKCVLIDDFVSSIF"
     gene            complement(1221..3122)
                     /locus_tag="VE223_05080"
     CDS             complement(1221..3122)
                     /locus_tag="VE223_05080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20996.1"
                     /translation="MVSPIGIQIYTNKSVTVPRTSLSLANEPSVANRDKLIFYTGNWY
                     DVRSLNGGSTWTYIDPFKDMHDFCCDQDIIYDSAHQIFIWYRLGTFDSNGENRFRLGI
                     SSDTSNWLFYNVSPRNFNGTWSHQFWDYPQLALSNKYLYITSNMFDQSGKLLRTIISR
                     WSLQDLSVGQSNVSFSYYSDKSLFNFTPVQGATDTMYWASHVSNSRMRIFRWSDTESA
                     ITSYDREIPAWTSSSDVTMSCKGPDSNDWCGRADSRILGGWLSQGTIAFMWMASAGNG
                     FPWPYLNAAKFRLSDMKYLESPYLWSPDHAWMYGSVSPNSRGDLGIVAFYGGGKVNPS
                     LAIGISQNSNNNNNDTSQLQSAWKMEPVMRGTNGPSQNDWGDFLRIRPYSGSVVNWVA
                     SGYTLKGGSTEDFIEPLYLVFGPQVNTTTINSTLREPPSTVTPTSIKAQGGDIMYVLA
                     VSSNSSGGASSLPSIDNKKSKYIVDKRSTYYYHPLLYSPMLEMMSISSNNSSATNYQV
                     SYSSFTESKSDSSNLRGNIYFEGLNCNPKKTNITVPPCSGRYPNYEVLVSSSKDCKTI
                     LSKTKSDQNGSYRMRLPPGNYVICPKSGNAPPPHPFGVEGAQPKPIQFIIKEGIVTNL
                     DLVIRTGIR"
BASE COUNT         1015 a          624 c          575 g         1072 t
ORIGIN      
        1 taatttaata atgttcatta catcaaactc atcgtctaat acaagtatcg acttgctacc
       61 aatcaacaca atcaattcct actaccaata gaggcaatta taaaccaagt tgaactataa
      121 cacaatgtca atattttcat ccgaaccatg aaaaaagttg aaatgatact agcgtatgca
      181 tatgtcgtac cgatagacac gaaaagtaat tttgaccatt atcatgcgga aaacatttcc
      241 ttcattctcc tttcactgct gcaaccattg tcgtatccac catctacaag tccttcatga
      301 tattcattgt aatagccatt ttgataggac atattagaag tagagagtat tgcaattcta
      361 ttggaagaga ttatagaaaa gaaaaacctt gtacaataag agaatcagaa gacgaagcga
      421 gtaaagttct tgcacaaaat aaaaggaacg ataaaactat agaacaacat actcaatatc
      481 ttgtcaacga gattgtaatt ggaacattgt atttttcttg ccgatctgct ttcaagtgtg
      541 tgttgataga tgactttgta tcatctattt tttgaaaagg cataccaaag ttttcattgc
      601 agtttactag attcttgaaa taaaaatgct caactatata aagaatttaa aattgtattt
      661 ttaaatatgt tttcaattgt gcttggcgat tctgaacacg ttgggaccta attttacagc
      721 ctttgccatt aaagaggttc cacagtttca gctttgttta ctgcgccgcc aagcacctat
      781 ttcaagccat agttgtcggt ctcactatta cacttatatt acaatttatt atataaaaac
      841 ctttcatcat attaaataat actaaataca ttgcaatagc tgtaattatt tcatatatat
      901 atttaattta attaatatct tatactctgg cagagagcga ggtctcccag aaaattaaga
      961 tatagttaac aaacatgtta aatttgtggt ccttcatttt cttcccgaat tccactatct
     1021 caaaatagtt gtttatgata gacagcaata tgctcgattc ttttcttgcc tttaggaata
     1081 gtcgttattg ttataaattt tccatgaggt aaagagcttc atgatagtaa tcttatgttg
     1141 aattgagcag tgccttatca atacagttat tcattttatt ggcatgattt aacatgcact
     1201 actaaactga gaatacttct ttaccttatt cctgttctaa ttaccaaatc aaggtttgta
     1261 actataccct cttttattat aaattggatg ggctttggtt gtgctccttc aactccaaat
     1321 ggatgaggag gaggagcatt acctgatttg ggacaaatta cataattacc aggaggcaat
     1381 ctcattctgt aacttccatt ttgatccgat ttagtcttgg ataatatagt tttgcagtct
     1441 tttgaagaag acacgagtac ttcataattt ggataacggc cactgcatgg tggaacggtg
     1501 atattcgttt ttttagggtt gcaattcaaa ccttcaaaat atatattacc gcgtaagttc
     1561 gatgagtcag attttgattc tgtaaaagag gaataactaa cttgataatt tgtcgctgaa
     1621 gaattatttg aacttataga catcatttcc aacattggag aatacaataa aggatgataa
     1681 taatatgttg atcttttgtc aactatgtat ttactttttt tattatctat agatggtagg
     1741 ctactagcac caccactaga attactacta acagctaaaa cgtacatgat atctccccct
     1801 tgggctttga tactagtcgg agttactgtc gagggtggtt ctctcagggt ggaatttatg
     1861 gttgtagtat ttacttgtgg accaaataca agatataatg gttctataaa gtcctccgtg
     1921 cttccaccct taagagtata tcctgaagct acccagttta caacggaccc actataaggt
     1981 cttatcctca gaaaatcacc ccaatcattt tgagagggac catttgttcc acgcatcaca
     2041 ggttccattt tccaagctga ttgaagttga gaggtatcat tattattgtt attgctgttt
     2101 tgacttattc cgatagccaa gcttggattt acttttccac caccatagaa agcgactata
     2161 cctaggtctc ccctactatt aggtgataca gaaccataca tccatgcatg atctgggctc
     2221 cagagataag gactttccag atacttcatg tcgcttaatc tgaatttggc agcattaagg
     2281 tatggccaag ggaacccatt tcctgcagat gccatccaca taaaagctat ggtaccttgc
     2341 gacaaccaac ctcctaatat cctgctatct gccctgccgc accaatcatt cgagtctgga
     2401 cccttgcaag acatggttac gtcagaactg cttgtccaag cgggaatctc acgatcgtac
     2461 gaagttattg ctgactctgt gtcagaccat cggaatattc tcatacggct gtttgaaaca
     2521 tggctagccc aatacattgt gtctgttgcc ccttgaacag gagtgaagtt gaatagtgat
     2581 ttgtctgaat aataactaaa tgagacatta gattgtccaa cgctcagatc ctgaagtgac
     2641 caccgtgaaa taattgtgcg tagtagctta ccgctttgat caaacatatt cgaagttatg
     2701 tagaggtatt tattgctgag agcaagctgc ggataatccc aaaattggtg gctccaggtg
     2761 ccgttgaaat ttctaggaga tacattgtaa aacaaccagt ttgaggtatc actagaaata
     2821 cccaacctga agcggttttc gccgttagaa tcaaatgttc ctaatctata ccatataaag
     2881 atctggtgag cagaatcata aataatgtcc tgatcacagc aaaagtcatg catatctttg
     2941 aatggatcaa tatatgtcca agttgaaccg ccatttaatg atctgacgtc ataccaattt
     3001 cctgtataga atatcaattt atctctatta gccacgcttg gttcgttagc tagcgatagc
     3061 gaagttcgtg gtacggtgac tgacttgttg gtgtaaatct gaataccaat aggcgagacc
     3121 atgttctgtg aatgtagtat tccttcctgt gaccgcagag aagatgataa cgaagatctt
     3181 gttgatccgg ttgcactata tccatttaag ttgatttcag ttatacttgc ccaagaattc
     3241 tctgagtttc cgtttactat aatttttaca tatctagcta caacaa
//
LOCUS       DASQSJ010000257         3095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_229862, whole genome shotgun sequence.
ACCESSION   DASQSJ010000257 DASQSJ010000000
VERSION     DASQSJ010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229862"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..288)
                     /locus_tag="VE223_05085"
     CDS             complement(106..288)
                     /locus_tag="VE223_05085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20997.1"
                     /translation="MINQIISKALQPAINLQWMDGAVIASVNFTHNITYHLSPTYSRN
                     NTYILVTMTGVATAIS"
     gene            complement(380..1618)
                     /locus_tag="VE223_05090"
     CDS             complement(380..1618)
                     /locus_tag="VE223_05090"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HZC20998.1"
                     /translation="MILKTGPNLIHASFFFIDIVGLSDPSMSTKIQIKKIETLNKSIM
                     NCSTFRSTPKDTMMALPTGDGMAIGFLQGPELPLKLAIELHGKLSKYNKSKIPAETVR
                     VRIGLHSGPVFVVNDILNNKNVWGPGIVVARRVMDIGDDGHILLSSRTAEDLREISDQ
                     YKQIIKPLYDYTTKHSQKLFLYSAYGKGFGNPKLPIKGLYQMSSGRNEEIEKIKRPAA
                     NINTTLYPSLEVNLSIKNSKTLLVHYKRLYEIQNISDKPIYEVIHGIATDIEKTFDDL
                     NIKVYDEENKPLRISAVHIDKPFQKEFTTVFNKPIMKSDKERRYYVLEYDVEEQGKYF
                     ENYFGTNCGRFVVTIEYPSHMSSPVAYEVNLETDEVIKCRIQPTVEKIRNSNDKGKRS
                     IARWKKKDIIQGQSFRFEWK"
     gene            complement(1681..>3095)
                     /locus_tag="VE223_05095"
     CDS             complement(1681..>3095)
                     /locus_tag="VE223_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC20999.1"
                     /translation="AALISSLIATAYVILFLCELPLSVSAQSNSAVIPYLPPSSIDNA
                     TSLEKSAPTTNSTALQASTEQKSNGALTIKQVIVDTDKVIPHSKFKITPNPFTLKGSL
                     TVHDNNATLDSDPDSGIIVLRNAKFSPYLINETSSPGFGPVLLKTRVTLHKTNPNPVV
                     TIENRQLNLPFTGFAKVTAPYLNDSSLRTFVSNGASVAGGIPLSRVDQLPSGLLVGSE
                     KQISRLTGNASTLQLKPVTFKTSVPATASASQIYKIFKIPTYPAPVKDIASRVTYVSP
                     AFVVKQQGLGNNSITLTPIIAKIFPGMTVLLNQNPSMGSGIAKVENFRMEFSQDANNV
                     GFSFSTSNNVPSSFRLSKVPVDIVALFLNIGYIGAATVPVKVINFSDSKSFAASPDIN
                     IVVTKSLDLPITKLPDGCPDIKLYSFNESTGKWQQLDKPIRQATLDAHEECGYILHTQ
                     HFSKFAVGGIKEQSSIVPEQ"
BASE COUNT          903 a          542 c          574 g         1076 t
ORIGIN      
        1 agcattcata attcataatt tcacatatat aatccggtat tgacaagttg gattccacgt
       61 taagaccatg agttggcgtt cttattgcag aaagaccaaa tggaattatg atattgctgt
      121 agcaactcct gtcatagtga ctaggatata ggtattgttt cgcgagtacg ttgggctgag
      181 gtggtatgtt atattgtgag taaaattgac acttgctatt accgctccat ccatccactg
      241 taagtttatc gccggctgta atgccttgct gattatctga tttatcaatc tctgtttaga
      301 agtgcggtag atgtagtaag attacgctaa ctggactatg cattgtcatt ttatcagtgc
      361 tttattgtaa atgcacaacc tatttccatt caaacctaaa tgattggcct tggataatat
      421 ctttcttctt ccatcttgct atactgcgtt tacctttatc attactattt cttatttttt
      481 ccacagtagg ttgtattcta cactttatca cttcatcagt ttcgagattt acctcatatg
      541 ctacaggtga actcatatgt gatggatatt caattgtaac tacaaacctc ccgcagtttg
      601 taccaaaata attttcaaag tacttacctt gttcttcaac atcatattct aaaacataat
      661 atcgacgttc tttatcggat ttcattattg gcttgttaaa aactgttgta aactccttct
      721 ggaatggttt atcaatatgt acagcagata tccgtagtgg tttattctct tcatcataga
      781 ctttaatatt gagatcatca aacgtcttct caatatctgt tgctatgcca tgtatgacct
      841 cgtatattgg tttatcagaa atattctgga tttcatataa ccttttgtaa tgtaccaata
      901 gtgtttttga attcttgata gagagattta cttccaaaga tggataaaga gtggtattga
      961 tattagctgc tggtcttttg atcttttcaa tttcctcatt cctaccacta ctcatttgat
     1021 ataagccctt aataggcaat ttcggattac caaaaccctt tccatatgca gaatagagaa
     1081 ataatttttg actgtgtttt gtagtgtaat catacaacgg tttgattatc tgtttatact
     1141 gatctgatat ttctcttaga tcttccgctg ttctagaact caacaagata tgaccatcat
     1201 ctccaatatc cattactctt cttgcaacta cgattccagg accccacaca tttttattgt
     1261 tgaggatatc attaactaca aaaacaggac cgctatgtaa cccgatcctc actcgtactg
     1321 tttcagcagg gattttgctt ttgttatatt tggaaagctt tccatggagt tcaattgcga
     1381 gcttcagagg aagctcaggt ccttgaagga agcctatggc cattccatct cctgtcggaa
     1441 gagccatcat agtatctttt ggcgttgatc taaaggtaga gcaattcatt atacttttat
     1501 ttagagtttc aattttcttt atttggatct ttgttgacat agaaggatca gataagccta
     1561 caatgtcgat aaagaagaag ctggcatgaa ttaggttagg gccagtttta agaatcaaac
     1621 ctataacatc atcagcttaa tagatatttg ctgtagtaat aataatttta tttcatttta
     1681 ttattgttca ggcactatag aggattgttc tttaataccg ccgacggcaa attttgaaaa
     1741 gtgttgtgta tgtaagatat aaccacattc ctcgtgagcg tctagcgtcg cttgtcgtat
     1801 tggtttatcc aattgctgcc acttaccagt agattcatta aatgaataca acttaatatc
     1861 agggcaaccg tctggaagct tagtaatagg caaatctagc gatttggtta caactatgtt
     1921 gatatcaggt gatgctgcaa atgattttga gtctgaaaag ttaattactt ttactggcac
     1981 tgttgccgcg cctatatagc ctatatttag aaacaatgcc acaatgtcaa cgggaacttt
     2041 agataacctg aaagaagatg gtacattgtt tgaggtgcta aaactaaatc ctacattgtt
     2101 agcatcttga gaaaactcca ttctaaaatt ttctaccttg gctatgccag atcccatcga
     2161 tggattttga ttgagtaaga cggtcatacc aggaaatatc tttgctatga ttggagttaa
     2221 ggtgatactg ttattgccta aaccctgttg cttaactaca aaagctggtg aaacataagt
     2281 tacacgagaa gcaatatctt tgacaggtgc aggatatgta gggattttaa atatcttgta
     2341 tatctgcgat gctgatgctg tagctggtac tgaggtttta aatgtaactg gtttcagctg
     2401 taatgttgat gcattgccag ttaatcttga aatctgtttt tcagaaccaa caagtaaacc
     2461 agaaggtaat tggtcaactc tgcttaaagg tattcctcct gctacagaag ctccattaga
     2521 aacaaaagtt cgaagtgagc tatcattaag gtacggagcg gttactttgg cgaatcctgt
     2581 aaacggtaag tttaactgtc tattttcaat tgtaacaaca ggatttggat ttgtcttatg
     2641 aagagtaact cttgttttta gcaatactgg cccaaaaccc ggagaagatg tttcatttat
     2701 aagataaggt gagaatttag catttcttag tactataatt ccactatcag gatcggaatc
     2761 taaagtggca ttattgtcat gaacagtaag ggaacccttt agcgtaaatg gatttggagt
     2821 tattttaaat tttgaatgcg gaattacttt atctgtatct actatgacct gctttattgt
     2881 tagcgctcca tttgattttt gttcagtact tgcttgtaaa gcagtactat ttgttgtagg
     2941 agctgatttt tccagggatg ttgcattatc tatagatgaa ggaggtagat aaggtatgac
     3001 agcactatta ctctgagcag acacacttaa aggtaattca cataggaaaa gaataacata
     3061 cgcagtagca atgagactgg aaattagagc cgctc
//
LOCUS       DASQSJ010000258         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_149610, whole genome shotgun sequence.
ACCESSION   DASQSJ010000258 DASQSJ010000000
VERSION     DASQSJ010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149610"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VE223_05100"
     CDS             complement(<1..266)
                     /locus_tag="VE223_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21000.1"
                     /translation="MISGRETTTNKDIIEIGLGSIGKVKIMKALAEEGKMITIYTLHK
                     KTHLKRDDIKRNLDDLMKIGWVNQSKLANVMYSVNRENDYVNRL"
     gene            complement(259..1428)
                     /locus_tag="VE223_05105"
     CDS             complement(259..1428)
                     /locus_tag="VE223_05105"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZC21001.1"
                     /translation="MSESSIFHDRSKLSPRYIPSDLPHREKQIEQIQFVFKDSYSKPD
                     GFPLAVLQVIGPAGIGKTSTVLKFSKLLEINFASNRLTIKTAYVNLKLQGGNKYAIYR
                     LLLERIAPELPAQGLSAEEMLRYLLRYLYENKKYALIILDEIDYLIKITKDSGIIYDL
                     TRLNEFDPDHPCNVKGVIFIARSTEFYSRLDKGELSTLGRVPMEFPTYSVKQISDILV
                     SRCSEAFNSKAIGSDVIDEISKITASAAVNGDIRYALDLLLYAGNLAESQGTGRVSLD
                     QIRKVHGQIHPSITTEEIEDLPKNQVFTLMALIRTLVAKKKQYAELKEIRPRVIELTE
                     EFKLKKFDVEDSLHDLQIRKLIEIRSLKEIGIHGASLQELEPILQKQIKGDRKND"
     gene            complement(1553..>2125)
                     /locus_tag="VE223_05110"
     CDS             complement(1553..>2125)
                     /locus_tag="VE223_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21002.1"
                     /translation="SKKYDTNYQPFYPTWMLSAYALSLESRRLGFEEVVDIGSGDGRI
                     AYCSKLLGMNSVGIEIDSDLVKLQHKISNSTNIKYRILNEDATTVEYCKLNLSKPMFF
                     ISGLPESGEMLANDVLTKIEQIRDLKYSAGINFMGSHTTKQYSRDKTKWGWGRIIEHF
                     DLDLIGCLTLPTHWTNDQQIDTAYVYTRFK"
BASE COUNT          608 a          412 c          345 g          760 t
ORIGIN      
        1 atcaaacgat ttacataatc attctcccga ttcacactat acataacgtt cgcaagctta
       61 ctctgattta cccatcctat tttcattagg tcatcaagat tacgtttgat gtcatctctc
      121 tttaagtgag ttttcttgtg aagtgtatag atagttatca tcttgccttc ctctgccaaa
      181 gctttcatta tcttgacctt gcctatgctg ccaagaccaa tttctattat gtccttgtta
      241 gttgttgttt ctctaccact aatcattttt acgatctcct ttgatttgtt tttgaagtat
      301 cggttctagt tcctgtaaag aagcaccatg tattccgatt tcttttagtg accggatctc
      361 aatcaatttt cttatttgta gatcgtgaag gctatcttcg acatcgaatt tctttaattt
      421 aaattcttca gttagttcta tcacacgggg acgaatttct ttgagttcag catattgttt
      481 tttcttggct acaagggttc tgatcaatgc cattagagta aaaacctggt tttttggcag
      541 atcttcaatc tcttcagtag taatagatgg atgaatttga ccatggacct ttcggatttg
      601 atctagactc actctacctg ttccctgaga ttcggcgaga tttccggcgt aaagaagaag
      661 atcaagggca taccttatat cgccattgac tgcagcagat gcggttattt ttgaaatttc
      721 atcaatgaca tcagatccaa tagcttttga gttaaatgcc tctgaacatc ggctgaccag
      781 tatatcactg atttgtttaa ccgaatatgt aggaaattcc attggaaccc tgcccaaagt
      841 acttaactct cctttatcaa gtctactgta gaattccgtg ctccttgcaa taaaaataac
      901 accttttaca ttacatggat ggtcaggatc aaattcgtta agacgagtaa gatcatatat
      961 aattccactg tcttttgtaa tctttatcaa atagtcaatt tcatcgagaa taatcaatgc
     1021 atatttcttg ttttcatata aataacgcaa tagatatctt aacatctctt cagcactcag
     1081 accctgtgca ggtagctcag gagcaatccg ttctaataat aatctataaa ttgcatattt
     1141 gttcccaccc tgtaatttta aattcacata agcagttttt attgttaatc tattgctcgc
     1201 gaaattgatc tctagtagtt ttgaaaattt tagaacagtg gacgtcttgc ctatgcctgc
     1261 tgggccgata acttgaagta ctgctaatgg aaatccatct ggtttagaat aagaatcttt
     1321 aaagacaaat tgaatttgct caatttgttt ctcacgatgt ggaagatctg atggtatgta
     1381 tctgggtgac aattttgatc tgtcatggaa gatggaactt tcagacattt tgcaagacaa
     1441 taaattcatc aaggaattct attaaaaagt atcctctgga gtggaatgaa tcttatgata
     1501 aagatgttgt tatcatcctc ttcattgtcg tcatcgtcat cttcttgata gattatttaa
     1561 atctagtgta tacatatgca gtgtcgattt gttgatcatt ggtccaatga gtaggcaaag
     1621 taaggcatcc tatcaaatcg agatcaaagt gttctataat tctaccccaa ccccactttg
     1681 tcttatctct ggaatattgt ttcgtagtgt gacttcccat aaaattaata cctgcagaat
     1741 atttcaaatc tctaatttgc tcgattttgg taagcacatc gttcgcaagc atttcgccag
     1801 attcaggcaa accagaaata aaaaacatgg gttttgaaag atttaacttg caatattcaa
     1861 ctgtcgttgc atcttcattc aatattctat atttaatatt agttgaatta gatattttat
     1921 gttgaagctt tacaagatca ctgtcgattt ctatcccaac tgagttcatt cccagtagtt
     1981 tactacaata tgctatcctc ccatctccag atcctatatc tacaacttcc tcaaaaccca
     2041 gtctcctaga ttctagcgac aatgcgtaag ctgatagcat ccatgttgga taaaagggct
     2101 ggtaatttgt atcatatttt ttact
//
LOCUS       DASQSJ010000259         2762 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_230016, whole genome shotgun sequence.
ACCESSION   DASQSJ010000259 DASQSJ010000000
VERSION     DASQSJ010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230016"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VE223_05115"
     CDS             complement(<1..668)
                     /locus_tag="VE223_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008612 - peptidyl-lysine modification to
                     peptidyl-hypusine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HZC21003.1"
                     /translation="MIIKPRKNKNKERQVSKAVKDYSIKPNNIKSIFHTMGESGGFES
                     RNLSNSLEILQRMQKEVQCTKFLSFVGALISTGVRGIIRDMIKSKMFDCIITTCGALD
                     HDIARTYDNYYAGEFRMNDYSLFKKNIHRLGNVLIPMNNYGPLIEEKVQACLKDLYYK
                     HGKRDIATYEIVDYIGSTLDESSFLYWAHRNKIPVIVPGIVDGAVGSQIWFFHQQHKD
                     FKIN"
     gene            complement(871..1236)
                     /locus_tag="VE223_05120"
     CDS             complement(871..1236)
                     /locus_tag="VE223_05120"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HZC21004.1"
                     /translation="MEEQKNGSEPRKQLPEDSYSGYYWGNEPYDSSNIAGRKTDEELK
                     NNIDQNLRNNSNISSNQIEVYVNNAAVTLKGSVKTYEERRLAGQEAWNTSGVVKVLKD
                     LQVLEPETAGPTKLSEKKS"
     gene            1451..2536
                     /gene="speY"
                     /locus_tag="VE223_05125"
     CDS             1451..2536
                     /gene="speY"
                     /locus_tag="VE223_05125"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HZC21005.1"
                     /translation="MDSRHSFSGRKIDPPNVLPNMTVSQLIDYYAITGYNARRLSEAA
                     EIMKLMIETNSTVCLTLAGAMTPIGMGKAVAIMIESGFIDWIVTTGANVYHDLHFAYD
                     LPVRQGQFNVDDDILYSKQIVRIYDTYIKEVGTLQAQDVIVQNQLTKNPELILPQVSS
                     TADISHILGKAAQETSNHPEKSFLASAYKHSVPVYMPAIGDSSIGLNMLPLLFRENTV
                     APNVILDIAESAAILWKSDASGAVELGGGVPKNFFQQTGPALYQILKIKEGGHDYIIQ
                     LTDARPDTGGLSGATLQEGKSWGKIKTSHKGNVIVYGDSSVYFPLLCSYVLSECKQKS
                     SKKLYTKKDAWTAELKQAYLKKKRKNK"
BASE COUNT          852 a          533 c          501 g          876 t
ORIGIN      
        1 atattaattt tgaagtcttt gtgctgttgg tgaaagaacc aaatctgact accgacggca
       61 ccatctacta tccctggaac aataactgga attttgtttc tatgtgccca atacaaaaat
      121 gaagattcat caagagtact gccaatataa tctacgattt catatgtcgc gatatctcgt
      181 ttcccatgtt tgtaatacaa gtctttcaga caggcttgca ctttttcttc gatcagtggc
      241 ccataattgt tcatcgggat aagtacatta cccaagcggt ggatgttttt cttgaatagt
      301 gaataatcat tcattctgaa ttcacctgca taatagttat catatgtcct agcaatatca
      361 tgatcgagag cgccgcaggt agtaattatg caatcgaaca ttttgctttt tatcatatca
      421 cggataatcc ctcgaacacc agtagatatt agcgctccaa caaaagacag gaactttgta
      481 cattggactt ccttttgcat acgttgcaaa atctctaaac tgttagaaag gtttcttgat
      541 tcaaagccgc cagattcccc cattgtgtga aagattgatt taatgttatt gggttttatg
      601 gaataatcct ttactgcctt gcttacttgt ctctctttat tcttgttttt tctaggcttg
      661 ataatcatga attcagatta ctagcgtagt ataaaatatc ttcttggtaa ggaaaataat
      721 tctccgaaaa tactctttga tgctgtaaga agttaacttc aaaatacaat tgtttacaat
      781 tgatcactta tagcaagata gatattccat ataatataaa agtggaaaag cctccgaatt
      841 taacaaaata aacacctcga tccaacgagc tcacgatttt ttttctgata atttggtcgg
      901 ccctgcagtt tccggctcaa gcacttggag atcttttaat actttgacaa cccctgaagt
      961 attccaagcc tcttgacctg ccaagcgtct ttcttcgtaa gtctttacac tgccttttaa
     1021 ggtgacggcc gcattattga catacacttc aatttgattt gaactgatat tactattatt
     1081 tcttagattc tggtctatgt tatttttcaa ttcctcgtcg gttttgcggc ctgcaatatt
     1141 cgatgagtca tatggttcgt ttccccagta atatccggaa taagaatcct ccggaagctg
     1201 ttttctaggt tcacttccat ttttttgttc ttccattatc taggtaggat tgtacttaac
     1261 tgatttaact attggatata attcttctag tgcttaacca gaagctgttc ttctttacaa
     1321 tctggttcta aatgctgcag tctcaactat agctaaatat gacaccttgg gtatgcaaat
     1381 acatctaatc gcattgttct aatttatgtt caatacattt tttaaaagta agatgatttc
     1441 tattatccgg atggacagca ggcattcctt cagcggcaga aaaatcgatc ctccaaatgt
     1501 tttacccaat atgacagttt cacagctgat tgactactat gcgataacag gttataatgc
     1561 ccgccgacta tcagaggcag ccgagattat gaaattaatg attgaaacga attccactgt
     1621 atgtttaact cttgctgggg caatgacccc aattggaatg ggtaaagctg tcgcaattat
     1681 gatagaaagt ggatttatcg actggatcgt tacaactgga gctaatgtat accacgattt
     1741 acattttgct tatgatttac ctgtacgcca aggacaattt aacgtagacg atgatatcct
     1801 gtattcaaaa caaatagtta gaatatatga tacttacata aaggaggtag gcactttgca
     1861 agcccaagat gtcattgttc aaaatcaact aacaaaaaat ccggaactga tattacctca
     1921 agtttcatct accgccgaca tatcgcacat attaggtaaa gccgcacagg aaacatcaaa
     1981 tcatcctgaa aaatcgtttc tagcatcagc atacaagcat agtgtaccag tttacatgcc
     2041 agctataggc gattcttcaa tcggtcttaa tatgcttcca ctattgttta gagaaaatac
     2101 tgtagctcca aatgtgattt tagatatagc tgaatcagct gcaatactat ggaaaagcga
     2161 cgcatccggt gcggttgagt taggtggagg cgttccgaag aactttttcc agcaaactgg
     2221 accagcatta taccagatat taaagataaa agaaggtggg catgactata taatccaatt
     2281 gaccgacgct agacctgata caggaggtct atcaggggcc actttacagg aaggtaaaag
     2341 ctggggcaag attaagacat cacataaagg aaatgtgata gtttatggtg attcatctgt
     2401 ttactttcct ctgctgtgtt catacgtgct ctcagaatgc aaacaaaaaa gttcaaaaaa
     2461 actatatacc aagaaagacg cttggacggc agaactgaag caggcatacc tcaaaaagaa
     2521 aagaaaaaat aagtgaagca atattgattt gagaacatac ctcaagtttc atttcccgac
     2581 actgtgtgta aaattaacca gagactgatt gtaagaaatt aacagaagtc aaatatttga
     2641 ttagcagatg gatctattgg atacatgttc tatctatgac tgggtccgcc tccaacagta
     2701 ctttgatttg cattttgtaa tgatgtacct tggggtttta ctaacgcggt tacattgcca
     2761 ga
//
LOCUS       DASQSJ010000260         2154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_230118, whole genome shotgun sequence.
ACCESSION   DASQSJ010000260 DASQSJ010000000
VERSION     DASQSJ010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230118"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(641..1666)
                     /locus_tag="VE223_05130"
     CDS             complement(641..1666)
                     /locus_tag="VE223_05130"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZC21006.1"
                     /translation="MLEYLQKAKALGLLTLILSLITTLALTTHFGLASAQIKTLMQPT
                     GIFFQIDNVTFSHHMASVNGIQLHYVIGGHGDPVFLLHGWPETWYEWHKVMPALAKNY
                     TVIAPDLRGLGDSSKPLTGYDGKTLAEDMHQLVTQLGFKRIFLVGHDLGAQQAYSYAA
                     AHPTEVRKLVIMDYFVPGFTPPHALDHVWWIPFHQLPDLPEALVDGKETTYLSWFYHN
                     FAYNPAAITQADINEFVSHYSAPGGMRDGFNYFRAFPQDAIENVNYSKTKLTMPVLAV
                     GPSSAPGFGGNVTANVALYSMQALAQNVRGVQVPNSGHWIPEERPDFVVKLLGNFFGG
                     NTTKTSK"
     gene            1891..2118
                     /locus_tag="VE223_05135"
     CDS             1891..2118
                     /locus_tag="VE223_05135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21007.1"
                     /translation="MNNKHARLYILRHSQATHLAKHLTEAQMWVFFGWIVSTKVVRRY
                     IHLSGRDVDNTLIMLNEGVSSRIEDDYIALA"
BASE COUNT          691 a          390 c          424 g          649 t
ORIGIN      
        1 atggaatcat gacattctat atgacacatg actgactaaa gtcgcatcag atatttctga
       61 ctacatgatg cttagattga aagaaaaagt tatactgcaa tggcttagat ctttcgttct
      121 ttatcgtatt gtaccggata ataggagata tcaaatggat catagaatta ttttatcaaa
      181 caagcagcaa gagcggatta tacatcacgt caggtttgat ttaattcagg aaatgacgag
      241 ggacaaacca caaaccttgg tttgccattg aacttagtta ttgtcactgt tttgtaaagt
      301 gttcttaatg ttgtctgttc acccttctta atcaatactg cattataggg tgttgataat
      361 acataaaaaa ttccattttg ctgttaattg gttaggagag ggttatgaca acatccatca
      421 ctgccaagtt tggccacatt atcctctaaa aacttgaaat ctaatattag gcacacacaa
      481 caggaccaga tagagataat gcttgtagtg gtcttatgtt tatctgctaa atgccagtag
      541 ttatcatcgg gtttgattga ttgcaaagat tgaattgact tctgcagatc attcgatgta
      601 agcatggtaa taatacactt gcagatttag tgagcattac tcatttgcta gttttagttg
      661 tattacctcc aaagaaattg ccaagcaatt ttactacaaa gtctggtctc tcttctggaa
      721 tccaatgacc tgaattggga acttgaacac ctcgaacatt ttgagctaat gcctgcatcg
      781 aatacagtgc gacattagca gtaacattac ctccaaatcc gggggctgaa ctgggtccta
      841 cagccagtac aggcatcgtg agtttagtct ttgaatagtt cacattttca attgcatcct
      901 gtgggaaagc tcggaaatag ttaaatccat cacgcattcc acctggagca gaataatggc
      961 tgacaaattc gttgatatct gcttgggtga ttgcagccgg attatatgca aaattatgat
     1021 agaaccatga tagataggtt gtctcttttc catctacaag agcttctggt aaatcaggaa
     1081 gctggtgaaa aggaatccac catacatggt cgagtgcatg gggaggagta aatccaggga
     1141 caaagtaatc cataatgact aatttccgta cttctgttgg atgtgcagct gcataagaat
     1201 aggcttgctg tgcccccaaa tcatggccga ctaggaaaat tcttttaaat cctagctgag
     1261 taactagttg atgcatatct tcagctaagg ttttgccatc ataaccagtt aatggttttg
     1321 aagagtctcc aagtcctctc agatcaggtg caataacagt ataattctta gctagggctg
     1381 gcattacttt atgccactca taccatgttt ctggccatcc atgtaataaa aatacagggt
     1441 caccatggcc tcctataaca taatgcaatt gaataccatt aacagaggcc atatggtgag
     1501 aaaatgtcac gttatcaatc tgaaaaaata taccagtagg ttgcattaat gttttgatct
     1561 gcgcggaagc taaaccaaaa tgggtagtca aagctaaagt tgtaataagt gacaggatta
     1621 gagtcaataa ccctaaggct tttgcttttt ggagatattc taacatttta tatgaaaata
     1681 taaatagtaa tagtatataa gaccattgta taagaataat atagagattt ccgaaataat
     1741 gtcagaaata ctcaaagatt ctattttcat ccagtcgaaa actccctata atacacccgt
     1801 ggttttggct tcgaattcct ttcaactaag tagtcataaa agtccctagg agctgagaaa
     1861 ataattgaag aggcgctgcc aaagtctggc ttgaacaaca aacacgctag gttatatatt
     1921 ctacgtcatt cacaagcaac acaccttgct aaacatctaa cagaagccca aatgtgggta
     1981 ttctttggct ggatagttag tactaaggtt gtacgaaggt acattcatct atctggaaga
     2041 gatgtagaca atactcttat tatgctaaat gaaggtgtgt catcaaggat agaagatgat
     2101 tacattgcct tggcttgatg gaccactaac gttgatgcaa aagcattgaa tgca
//
LOCUS       DASQSJ010000261         3160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_413829, whole genome shotgun sequence.
ACCESSION   DASQSJ010000261 DASQSJ010000000
VERSION     DASQSJ010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_413829"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..465
                     /locus_tag="VE223_05140"
     CDS             256..465
                     /locus_tag="VE223_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21008.1"
                     /translation="MPVNNEMVENRIPISLREFLDLMVAVDTISLFGGLGFSRLLRSA
                     SGFNITNPTSNSASTNHFAQQLQQQ"
     gene            526..1716
                     /locus_tag="VE223_05145"
     CDS             526..1716
                     /locus_tag="VE223_05145"
                     /inference="COORDINATES: protein motif:HMM:NF012415.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HZC21009.1"
                     /translation="MINMAEGWISCINCNNRFRAFIRFCPICGSKNPFYNRAPPSKNL
                     FRKKADKKAIVFAASIIVVIISIVLLSNVFTKNNGSNVNNDLYIENPKSLEIQTHPNI
                     AVDNSLLQYALYKINEDRAKYNLPPVQLSRNEAAQIHAEDILRTKVISHWTTDGMKPY
                     MRYSIYNGTGYVSQNIAITSISGAGTINPYTEINGSEWQFVNNDTICCNDGHRHNILD
                     KHHTQVSIGIAYNDHFFALVQNFENNYIQFNQPFIQDKTHVQISGRLLPEKNNNIDGI
                     DIYYDKTPTPSVYEQHKNDKSYGPGQAVASVFNPLNFNLWIVYIREHIYSSIGISQNI
                     SLIPADKWSIDDQTIDIRFDLSPILKNDGVYNIVTFREDEQKNQFPVTTYSVFVRTNT
                     TSSR"
     gene            complement(2264..2602)
                     /locus_tag="VE223_05150"
     CDS             complement(2264..2602)
                     /locus_tag="VE223_05150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21010.1"
                     /translation="MVQKQIAFEKTRQQGEVLTLSDIAPNWAKRLGGQQQLPFPMSVT
                     WLRWWFEIIYPPKCVVGEAHGFTRSYTDSCAECGKIGDKFSLYFTLHLRSKLEENKHR
                     FVKHWIKEHG"
     gene            2931..>3160
                     /locus_tag="VE223_05155"
     CDS             2931..>3160
                     /locus_tag="VE223_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21011.1"
                     /translation="MTRSGDRSTSSSLRNSSEYDNNRNKRNPTATAPQAVANSNTPIS
                     SRSSSSFLELENKISKEVPQNRPNEICEFMKL"
BASE COUNT         1069 a          579 c          561 g          951 t
ORIGIN      
        1 gacatgttac aacggttata aagcctaaaa gtatgataga acatgagcat gattttgtca
       61 aagaaacaaa tagagacctc atccactgcg ccacttgctg tgcacgttac tgtaacatgt
      121 gtggtaagag actggaagat gaagtaatta atcaccaatg ttactatcta aggtaactat
      181 gcaagtggag tgatttgaag aaagtattcg gcaaatatcg gttaaggtat tatcagctta
      241 atcttgggct gcaatatgcc agttaacaat gaaatggtag aaaatcgaat accgatatcg
      301 ttgcgtgaat ttctggattt aatggttgca gtagatacca tttcgttatt tggtggattg
      361 ggtttttccc ggctactgcg ttctgcatcg ggatttaaca ttacaaaccc tactagtaat
      421 agtgctagca ctaatcattt tgctcaacag ctacagcagc aataaacata gaacaactaa
      481 taagtatgga cgatgccaaa accaataaaa aaatcaaagc aatagatgat aaatatggca
      541 gaaggatgga taagttgtat taattgcaac aaccgattta gagcgtttat acggttctgc
      601 ccaatttgcg gaagcaagaa ccctttttac aatagagctc ctccaagtaa gaatctattc
      661 agaaaaaagg cagacaaaaa ggccattgtc tttgcagcat ctattattgt tgtcataatc
      721 agcattgtgc ttttatcgaa tgtatttacg aaaaataatg gctctaacgt aaataatgat
      781 ctatatatag aaaaccccaa atctctagag atacaaacac atccaaatat cgcagtagat
      841 aacagccttc tacaatatgc tttatacaaa ataaatgaag atagagcaaa atataactta
      901 ccacctgttc agctcagccg caatgaagca gcccagattc atgcagaaga catcctaaga
      961 actaaagtaa ttagtcactg gaccacagat ggcatgaaac cgtatatgag gtattcaatt
     1021 tataatggca caggatatgt atcacagaat atcgcaataa ccagtattag tggcgccggt
     1081 acaataaatc cttacaccga aataaatggc tctgagtggc agtttgtgaa taatgataca
     1141 atatgttgca atgatggtca cagacacaat attctagaca aacatcatac tcaggtcagt
     1201 ataggcatcg cttataatga tcattttttt gcattagtcc aaaattttga gaataactat
     1261 attcaattca atcaaccatt tattcaggat aagacgcatg ttcagatctc aggacgatta
     1321 ctcccagaga agaacaacaa cattgacggt attgacatct actatgataa aacaccgact
     1381 ccctcagtat atgagcaaca caaaaatgat aaatcatatg gaccaggaca ggctgttgcg
     1441 tctgttttca atcctctaaa tttcaacctt tggatagtgt atatcagaga acacatttat
     1501 tccagcatcg ggatatcaca gaatatttcg ctaatacctg ctgacaaatg gtcaatagat
     1561 gatcagacaa tcgatatcag attcgatctt tcaccaatat taaagaatga cggagtctat
     1621 aacatagtca catttcgcga agatgaacag aaaaaccagt ttccagtaac aacatattca
     1681 gtttttgtaa gaacaaatac aacttcatca cgatagggca ttcattaatt ctttattctc
     1741 atcgagtatt tctatggtag taacattatt ttcaagcaga tgatcatttg ggccatgtta
     1801 ggagtatttg aatcctgata tgctacatat agctataagc tggtactgct atactgttga
     1861 agttagatga gaataattgg caggttgatt attgattaga ttggccggat tttgacaatt
     1921 ttaatgcttt gttgcataac tctgttatca gtctgtaaca gcagaaatat ttgccttcgt
     1981 agtaataaat caaatataat tagtgataag atatattgaa atgtcaatat ttcccgatta
     2041 atttagtatg caacaatgca aattttaata tgttttgaag tttcttagta tattaccttg
     2101 caatttgggg catcaacgtc ttgtggaaat aaatcaaata tcttatctaa tatctaatag
     2161 attcttgata tctggcaagt gataaagaag atcctgaccc ttgttgttga gggcgagcca
     2221 attcaattct ccaacgggtt gcaggaacag tctgagaact aaactaaccg tgttctttaa
     2281 tccagtgttt gacaaaccta tgtttgtttt cttctagttt ggaacgcaaa tgcagagtaa
     2341 aataaagaga gaacttgtcg ccaattttac cgcattctgc gcaactatct gtgtaagacc
     2401 ttgtgaaacc atgtgcttcc cctacgacgc atttcggagg gtaaatgatt tcaaaccacc
     2461 atcgtagcca tgtaactgac ataggaaaag gtagttgttg ttgtccccct agccgttttg
     2521 cccagttagg tgcgatatcg ctcagagtta atacttctcc ttgttgtctg gtcttttcaa
     2581 aagcaatttg cttttgtacc attatattat aatgcttctc ctattatttc aaaattgcga
     2641 gtattgcgcc tttcgcatta acttccataa caagttacaa cgatactcac tattccatag
     2701 taaggtcacg caccacttaa ctactaaatt gtatgtcgct tcagatttta tctttttttt
     2761 ctggagtctt agaaattact gaattaatta attaaaatct atacaggaga tgttatgacg
     2821 gccgcaccta accaaaaagg taagtttatc ggataggccg cgaaggagtc caaaatatgc
     2881 ttcaggtcca tgcagctatt atatacaata tacacgagtt gaatagcagg atgacacgca
     2941 gtggtgatag atctacttct tcctctttga gaaattcttc tgaatatgac aataatagaa
     3001 ataaaagaaa cccaacagca acagcaccac aagcagttgc taactcaaac actccaattt
     3061 cctcacgatc atcatcttca tttttggaac ttgagaacaa aatttcaaaa gaggttcctc
     3121 aaaatcgacc aaatgagata tgtgaattca tgaagttatt
//
LOCUS       DASQSJ010000262         7171 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_253889, whole genome shotgun sequence.
ACCESSION   DASQSJ010000262 DASQSJ010000000
VERSION     DASQSJ010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7171
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_253889"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(273..1484)
                     /locus_tag="VE223_05160"
     CDS             complement(273..1484)
                     /locus_tag="VE223_05160"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZC21012.1"
                     /translation="MELEITIINGILATITFGIFGTWIYFIGYVLKSLKQSPALECID
                     TSVIAKNIKVSVILPARNEEKYIAKCLESLINQDYVNFEIIAINDSSTDRTIDILCQY
                     ARKSSSIVIVNAKPKPEGWIGKNWACYEGYLRATGDVFLFTDADTVHSPSVMSLAVGH
                     LEQKSLEALTAIPKLLCKDVLTKITLPLLLNFLHSRFSALRVNDPNTKTGYFFGSFYM
                     ITRRTYEAVGTHKVIRHELVEDGALGSKVKEGKYRMKMVRGEHYIEAIWARDLNTLWH
                     GLRRLMISICSQNIREASLMTIAIFFLLLEPFLLISYSLMIYHRISDIVSQLMWDINL
                     ITIAIVTLASAIQSKFAVFQNPLYALACPLGGAIISLCFLSSILDAKKVGAVNWRGRK
                     YTINENQHPLE"
     gene            complement(1507..1947)
                     /locus_tag="VE223_05165"
     CDS             complement(1507..1947)
                     /locus_tag="VE223_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HZC21013.1"
                     /translation="MVIVQVAREMLAPLDKVWDIISDIDNEPLYWRGTKYIKNISKIG
                     NVVEREVVIAFRESKCKETVVLNPKKMVKVNITNGPLEGSKIITLDSTGPSNTTVYVK
                     WDIRLSGFMRMFTVFIKKHIREGTEEALSRIASKTDRESDHLLK"
     gene            2200..2484
                     /locus_tag="VE223_05170"
     CDS             2200..2484
                     /locus_tag="VE223_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21014.1"
                     /translation="MEKKIHVAVTIVVMAFGLILATVGSAQSGHAQKNATSSASSAAK
                     SAGGAMNKTAGNMTSSAGGAAGSNKTSGGNASSSNPLAKVPVIGKLFGGK"
     gene            2680..3030
                     /locus_tag="VE223_05175"
     CDS             2680..3030
                     /locus_tag="VE223_05175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HZC21015.1"
                     /translation="MGISEQEEELITYEQFSKIHLRIGKVIRAEKVPGMKKIFKVTVD
                     IGEEQRDLAVGAALYYNPEELVGRAVVVCTNLEPKKIGGIISNGMLLAADGPEGRPVF
                     LTITENVSNGSLVH"
     gene            complement(3112..3780)
                     /locus_tag="VE223_05180"
     CDS             complement(3112..3780)
                     /locus_tag="VE223_05180"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HZC21016.1"
                     /translation="MHKPIIYLGPSLSHEKARKILDADYRPPAKKGDFLRLIGLQNDA
                     NIIGLVDGLFLQDYPPTPIEVYQIAIKKNTLLFGAASLGALRAVELEKFGMIGIGKIF
                     ELYKKGKIHADDEVAVTFAQDKQTLQSEAMIDIRFNLFVAQRKGILDEVTKRAIAKVA
                     KSIYFPYRNYDDIIEQTKKLYPELKSHLESFRFYIQHNRQSLKERDAIKLIRYIKENY
                     VDKQ"
     gene            complement(3773..5113)
                     /locus_tag="VE223_05185"
     CDS             complement(3773..5113)
                     /locus_tag="VE223_05185"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HZC21017.1"
                     /translation="MANTSMSIGKLLLRSRKKWTAKGTSRIKPAKETLEEVLSLAQKI
                     GVTRLADITDMDILRIPNYSAILPGTEDYIWVYSGKGPTKTHAKVSALMESIERYSSL
                     PSGTPRNFIQKSYDQLSNTHRVLHPEEVVEPMRFQYRNDMILDFLPGFDLFTGEEIMV
                     PAALALFRYSPKAPAVDPFAFHHTNGLASGNVEEEAICHALCEVIERDAMSLAELRAS
                     AIPFHFLKAMTKALEIEGYPIPTIRADKFTDDPSLYPDVDISDAEFEPIKSVANKFSK
                     AGIPLIIKDITSSVGIPTFNASSIEWVTHDYGYLAEGHGTHPDARIALLRAITEVSQT
                     RAANIQGARDDLRKINYGQDNTNDKRAWQFMPSSNRINLSEVRTYSNEDILEDIKLLL
                     DHLKEDRLTTAIIVNLTNPDIGIPVVRAIVPGLETFKITKSIIGHRAKRYFKNA"
     gene            complement(5422..6819)
                     /locus_tag="VE223_05190"
     CDS             complement(5422..6819)
                     /locus_tag="VE223_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21018.1"
                     /translation="MSDIISWDKAIDMKVKSSDNKDLGKIQSITKDYIQTKEGLVSKN
                     YYFIPKYHIQGYDGDKLWVSLTKDDVKARFEKEKAPDPSEFDTPEYNQRKTNMVKQYP
                     DFENNIPPYSGGGGQETQSSTSVPSTASQDMVGLPWENVIDKTVKSSDDQELGKVESV
                     STYYLESKEGHVSKKHYYIPKYYVQGFDGKNLHTSLTKDEIKNKYERDSPPSESEFKT
                     QEYEEQRKKMDSTYPQFSDGVPFMAKEPGVALESESTGETLDIPWEEVIYKRVRTTDN
                     VDIGDIETVGKEFIVVREGDVKIHHYYIPKSYITNYDGSSLWIDAPSGLVSGKFERET
                     EPTPEELRIMSEELPKRKRTAKAGQSADQSDDEREKAYEEGSAGTESTRKEDPLKEYR
                     DKEPMTPAKIAEHEPTAVHREMTEKIRGGGKEEEVPNPEAAKERARRSGMAKGTDSDL
                     ETGSEYEQGVAGSNK"
     gene            complement(6964..>7171)
                     /locus_tag="VE223_05195"
     CDS             complement(6964..>7171)
                     /locus_tag="VE223_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21019.1"
                     /translation="DSYDITIYSDHGKVLWKKVNQTPTAGRGLATVRFGNGGYTGPMT
                     IQVTNIKSGNIPPNSATFSAKTGG"
BASE COUNT         2008 a         1404 c         1269 g         2490 t
ORIGIN      
        1 tattattaat aaacacttag agttgaatat agctatttgt cttgacgtag gtaactgttc
       61 tgcacgttta atgaccttta gtgctttaaa ttaacatatc gaagtcgttc aagcccatcg
      121 acgcccttgt ttattcgatt gaacatatat ctgtctgttt atcagtatca tctggctaga
      181 aatttctatc cgatacaaga cgcgttttct gacaactcct gtgctcttgc ttaccatgtg
      241 ttaggctctt cgcagctaat tagcaaacga ggttactcaa gtggatgttg attttcatta
      301 attgtatatt ttctacctcg ccaattcacg gctccgacct tttttgcatc aagaatcgac
      361 gataaaaagc aaagagaaat gattgctccc ccaagcgggc aagctagcgc atataatgga
      421 ttttggaaaa cggcaaattt tgattgtatt gcacttgcta aagttacaat agctattgtt
      481 attagattga tatcccacat aagctggcta acaatatcgc ttatcctgtg atatatcatc
      541 agcgaataag atatcaatag aaaaggctca agtagtaaga aaaatatcgc aattgtcatt
      601 aaggatgctt cccttatgtt ttgactacaa attgagatca ttaaccttcg cagtccatgc
      661 cagagagtgt tgagatctcg agcccagatt gcttctatat aatgttcacc acggaccatt
      721 ttcattctgt actttccttc ctttacttta cttcccaatg caccatcttc aacaagttcg
      781 tgccttatga ccttgtgtgt acctactgcc tcgtaggtac gtctagtgat catataaaaa
      841 ctaccaaaaa aataaccagt tttcgtattg ggatcattta cacgcaacgc agaaaatcta
      901 ctatgaagaa aatttaaaag caaaggcaga gtgatctttg tcaaaacatc cttacacaaa
      961 agtttaggta ttgcagtaag tgcctctaag cttttctgtt caagatgtcc aacagctaaa
     1021 gacatcactg agggagaatg tacggtatct gcatcagtaa agaggaatac atctcctgtt
     1081 gctctcaaat atccctcata gcatgcccaa ttttttccaa tccacccttc tggctttggt
     1141 ttagcattaa caatcacaat agaagagctt tttcttgcgt attgacagag tatatcgatt
     1201 gttctgtctg tagaagaatc gttgatggcg ataatttcaa agttcacata atcttggttt
     1261 atcaaacttt caagacattt tgcaatgtat ttttcttcgt tgcgggcagg aagaattacg
     1321 ctaactttaa tatttttagc aattacagat gtgtcaatgc actccagcgc cggagattgt
     1381 ttgagagatt ttagaacata ccctatgaaa taaatccatg tgccaaaaat tccaaacgtt
     1441 atcgtcgcta agattccatt tattatcgtt atttcaagtt ccatatgcac tccacgcctg
     1501 gtgctactat ttcagtaggt gatcggattc tctatcagtt ttacttgcga tcctagatag
     1561 cgcctcctct gttccttctc ttatgtgttt ttttataaat acagtaaaca ttctcatgaa
     1621 accagaaagt ctgatatccc acttcacata tactgtagta ttactaggtc cagtagaatc
     1681 tagtgtgatg atttttgatc cttccagcgg cccatttgtt atatttactt tgaccatttt
     1741 ttttggattt aatacaacag tttctttgca ttttgattct ctaaaggcaa ttactacttc
     1801 tctttcaacg acgtttccga tcttactgat atttttgata tacttagtac cacgccaata
     1861 gagcggttca ttatcgatat ctgatattat gtcccaaact ttatctagcg gagctagcat
     1921 ttcacgggca acctgtacta taaccataat tttaaaatgt ccttaacaat atgccgagat
     1981 ccctctcaaa aggatagttg tacacgtcat cttatccaag atagttgtcc tatattttct
     2041 tttataaatg atgcttcgcc taagaccagg ttatgcataa ttgttgctat aatctaggca
     2101 tatttacgta tcaaagcaat catataataa aaatctagat tttaattcca tattatagaa
     2161 atgaaagtat taaaaataga tgttattaat ctatttgcga tggaaaaaaa gatacatgta
     2221 gcagtcacaa tagttgtgat ggcttttgga ctcattttag cgacagtagg ttctgcacaa
     2281 tcaggacacg ctcaaaaaaa tgcgacaagt agcgcaagta gtgctgcaaa gtctgcaggt
     2341 ggcgcgatga acaaaaccgc aggtaacatg acctcttctg ctggcggagc tgctggatca
     2401 aacaaaacta gcggtggcaa tgcatcttct tcaaatccac tggctaaagt tccagtaata
     2461 ggaaagctat ttggcggtaa gtgaaaagaa gaccatagaa gaaccaagta gttaagcata
     2521 gtaaaacctt gttgcaaaaa agcaacaaga aattttttta catatttact cctataagat
     2581 caattcagtc ttcatttaac gttcataatt aattaaattt ctagataaat tcgtcaacta
     2641 acaaaaataa ttttaacagg gtagtgatta ctttacttta tgggtatatc cgagcaagaa
     2701 gaagaactta ttacatatga gcaattttca aagatacatt tgagaatcgg caaagttatt
     2761 cgggctgaaa aggtccctgg tatgaagaag atctttaagg taacagttga tatcggagag
     2821 gagcaaaggg accttgcagt aggcgctgcg ctttattata atccagaaga gttagtcggt
     2881 agggcagtgg tagtttgtac aaatctagaa cctaagaaaa tcggcggtat aatttcgaat
     2941 ggaatgttac ttgctgccga cggacctgaa ggaagaccgg tattccttac tattaccgaa
     3001 aacgtcagca atggatctct tgttcattag tattcagtat ttgccgagaa attctgggag
     3061 ataatcttaa atcaggaatt tttggccgta gaactttcta catcttaatg cttactgctt
     3121 gtcaacataa ttttctttta tataccttat tagttttatt gcgtcccgct cttttaggct
     3181 ttgtctatta tgctgaatat aaaaacgaaa tgactccaaa tgacttttca attcaggata
     3241 caatttcttt gtttgttcaa taatatcatc ataatttcta tacggaaaat agatactttt
     3301 agcaactttg gctatagctc ttttagtgac ttcatcaagt attccttttc tctgtgcaac
     3361 aaatagatta aatctgatgt ctatcatagc ttcagactgg agagtttgtt tgtcttgtgc
     3421 aaaagtcact gccacttcgt cgtcagcatg tattttacct ttcttgtata attcaaaaat
     3481 ttttcctatt ccaatcattc caaacttttc gagctcaact gcacgaagag cgccaagact
     3541 tgctgcccca aaaagaagcg tatttttttt tatagctatc tgataaactt ctattggagt
     3601 tggggggtaa tcctgcaaaa acaagccgtc aactaatcca attatatttg catcattctg
     3661 caaacctata agccgcaaga aatccccttt ttttgccggc ggccgataat ctgcgtctag
     3721 aattttcctt gctttttcgt ggctaagact agggccaaga taaattattg gtttatgcat
     3781 ttttaaaata cctttttgct ctatggccta tgatcgattt agtaatcttg aaggtttcta
     3841 gtccggggac aattgctcgc actacgggta taccaatgtc aggattagtc aagttaacta
     3901 ttatagctgt tgtcaaacgg tcttctttta aatgatctaa taataactta atatcttcaa
     3961 gtatatcttc gttggaatat gttcttactt cagagagatt aatcctgttg ctagatggca
     4021 tgaactgcca agcacgttta tcgttagtat tgtcttgtcc atagtttatt ttccttaaat
     4081 cgtctcttgc tccttggatg ttggccgctc tggtttgtga aacctctgtt atggcacgta
     4141 atagtgcgat tcttgcatct ggatgagttc catggccttc agcaaggtat ccatagtcat
     4201 gagttaccca ttcaatgctg cttgcgttaa aggttggaat acctacagag gatgtgatat
     4261 cttttattat caatggtatt ccagcttttg aaaatttatt ggctacactt tttattggct
     4321 cgaattctgc gtctgatata tctacatctg gatacagact aggatcatct gtgaatttgt
     4381 ctgcacggat tgttggtatc ggatatcctt ctatttccaa tgctttcgtc atagctttga
     4441 gaaaatggaa aggtatagca ctggcacgca attcagccag gctcattgcg tctcgctcaa
     4501 taacttcaca taatgcatgg caaattgctt cttcttccac attgccagag gcaagaccat
     4561 ttgtatggtg aaatgcaaat ggatcaactg caggagcttt tggagagtat ctgaataatg
     4621 caagagctgc agggaccata atttcctcgc ctgtaaacaa gtcaaatcct ggaagaaaat
     4681 caagtatcat gtcgttccta tattgaaatc tcataggctc tacaacttct tctggatgca
     4741 atactctatg tgtatttgat aattgatcat atgatttttg gataaaattt cttggtgtcc
     4801 cacttggcaa ggaagaatat ctctctatgc tttccattaa cgcgctaact tttgcatgtg
     4861 tctttgttgg acctttacca ctataaaccc aaatataatc ctctgtacct ggcaaaatag
     4921 cagagtaatt gggtatgcgt agtatatcca tatctgtaat atcagcaagc cttgttacac
     4981 ctatcttttg agctaatgat aatacctctt caagcgtctc ctttgcaggc tttattctcg
     5041 aagttccctt tgcagtccat tttttcctgc ttctaaggag caattttcct atgctcatgg
     5101 atgtgttagc cataatttag ttcatatcaa gtttacgaaa aagacatagg aatatatatt
     5161 agacttcgta ttcgtgctgc tgtttggacc aaatacagaa ggacgctgag gtcattagcg
     5221 aaattctatt aagagctagc agcgaaccag aattcaggag gctattgatt aggaatcctt
     5281 caaagttttt agaacaatat aacatttcac cggaggccaa atcagtaatt agaaaaagca
     5341 taattgacct cacacaatag cgacaatagt aatgaataaa gtatcagacc agagcaaaaa
     5401 ggaattataa atagattttg tttatttgtt tgacccggcg actccttgtt cgtattcgct
     5461 accggtctct aaatcactat ctgttccttt agccatacca cttcttctag ctctttcttt
     5521 tgctgcttca ggatttggta cttcttcttc ttttccacct cctctaatct tttccgtcat
     5581 ttctcgatgt acagctgttg gctcgtgctc cgctatcttt gcaggagtca ttggctcttt
     5641 atctctatat tcttttagtg gatcttcttt tcttgtgctc tctgttccgg ctgagccttc
     5701 ttcataggct ttttcccgtt cgtcatcaga ttggtcagca gattgacctg ctttggcagt
     5761 tctttttctt tttggcagtt cttctgacat tattctaagc tcttctggag ttggttcagt
     5821 ttccctttcg aatttgccgc ttacaagtcc acttggagca tcaatccata aagagctacc
     5881 gtcataatta gtaatatatg attttggaat gtaataatga tgtattttta catctccttc
     5941 cctcactaca ataaattcct ttcctactgt ttcaatatct ccaatgtcta cattatcagt
     6001 agttctgaca cgtttataga ttacctcttc ccatgggatg tcgagtgttt ctcctgttga
     6061 ttctgattca agtgctactc ctggttcttt agccataaat ggtactccgt ctgaaaattg
     6121 tgggtatgtc gagtccattt tttttctttg ttcttcatat tcctgagttt taaactctga
     6181 ctcagaagga gggctgtctc gttcatactt attctttatt tcatcttttg tcaatgaagt
     6241 atggagattc ttgccatcaa atccttggac atagtattta ggaatgtaat aatgcttctt
     6301 acttacatgg ccttctttgg attctaagta gtaagtagag acactttcaa ctttacctag
     6361 ctcttgatca tcgcttgatt ttacagtttt atcgataaca ttttcccagg gtagaccaac
     6421 catgtcttgg gaggcagttg atggaacact agttgacgac tgtgtttctt gcccaccacc
     6481 gccactatag ggaggaatat tattttcaaa atccggatat tgttttacca tgtttgtttt
     6541 cctctgatta tattctggtg tgtcaaattc agaaggatca ggagcttttt ccttctcaaa
     6601 tcttgccttt acatcatcct ttgtgaggga aacccacagc ttgtcaccat cgtatccttg
     6661 tatatggtat tttggaataa aataataatt ctttgacacc aatccttctt tggtttgtat
     6721 gtaatcctta gttatagatt ggatcttgcc caaatcttta ttatcactag attttacttt
     6781 catgtcaatg gccttatccc atgatataat atcagacatt ttccttattc atatgctaat
     6841 tctatcacat gcaatttatt agtttaggct gattttacat attttatttg atttttgcct
     6901 gcatggatga attcatttgt aattgtgtga gttttgatag atagacagat agatagatag
     6961 atatcatccg cctgttttgg cactaaaggt tgcagagttt ggcggtatat tacccgattt
     7021 tatgttagtt acctggatag tcatcgggcc agtataaccc ccgtttccaa atctaactgt
     7081 tgcaaggcct cttccagctg ttggggtctg atttactttc ttccaaagta ccttaccatg
     7141 atctgagtaa atagttatat cataactgtc t
//
LOCUS       DASQSJ010000263         2067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_572777, whole genome shotgun sequence.
ACCESSION   DASQSJ010000263 DASQSJ010000000
VERSION     DASQSJ010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572777"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..125)
                     /locus_tag="VE223_05200"
                     /pseudo
     CDS             complement(1..125)
                     /locus_tag="VE223_05200"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
     gene            complement(375..1193)
                     /gene="larE"
                     /locus_tag="VE223_05205"
     CDS             complement(375..1193)
                     /gene="larE"
                     /locus_tag="VE223_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HZC21020.1"
                     /translation="MTGVHPTDDLKRLIDWFLSNGDKTVVALSGGVDSAVLALAAKRA
                     FGNNALSVTANYKTLSYQELSAARKVAREIGIKHKVIKYSELESSDFVKNDQLRCYHC
                     RKELGLRLVNEANKFKTNLVVDGTNLDDLKEYRPGITGLKENGVRSPFLELGIDKSVI
                     RAIAQHFGLSVYDKPSNACLASRIPHGTPVTYEKLRRIEKSEIIVMKIFNIRQVRVRD
                     HGDIARIEVGKEELTKLFDVDKLAIIDCRLKELGFKFVAIDAGGYRTGGLVVIR"
     gene            complement(1203..>2067)
                     /locus_tag="VE223_05210"
     CDS             complement(1203..>2067)
                     /locus_tag="VE223_05210"
                     /inference="COORDINATES: protein motif:HMM:NF014072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LarC family nickel insertion protein"
                     /protein_id="HZC21021.1"
                     /translation="NEISSIDTFADLVGCATALQDLGLLSSRIFSTKIAVGGGTLKFS
                     HGTIPNPSNIILEIFKGKPFTLIGGQREGELTTPTGAAMLVNLTSECINYYPCFSPER
                     MGYGMGHKKLRQIPNLLRLVIGNSSLVLKTNTDNIFVIETNVDDISGEIIGNLIDLLT
                     DAGAKDVTAIPGVTKKNRPMHLLRIITDQTQLDGILEMLFRESGSTGVRVQEIQRFIL
                     PRTIITVPVNILDNHFNIRVKIAKDTVGDIVNTKPEFEDIKAIASKLGIPLKRTMEIV
                     NADILQKIGTR"
BASE COUNT          577 a          436 c          339 g          715 t
ORIGIN      
        1 atttcttttg tgcacactgg agattcagca gccggaaaga atgcaagtat tacttccttc
       61 cctctatagt cactcaattt ttgcattttc atatcgatgt ctggcaactg aaaatcaggc
      121 gcttcatcac cgacatttgg aaccgttgta attgaactat tatgcatatg taatataagt
      181 taaaattgac aatattaatg cttacaataa cggtttgtga agctgtatta catactactg
      241 taattgatac ttaagatgat taatgcacgt gcttttttgt tattatcctg ataagagttg
      301 cttttatctt agttttagca gtgcatcatt ttgggatctc gccaatccat ttgatcgact
      361 ggacttaata aagatcacct tattacaact agacccccgg tcctgtatcc accagcatca
      421 attgccacaa acttgaatcc tagttccttg agtctacaat ctattatagc taatttatca
      481 acgtcaaata atttagttag ctcttctttt cccacttcta ttcgtgcaat atctccatga
      541 tctcttaccc ttacctgcct aatattaaat atcttcataa ctataatttc tgatttttcg
      601 attcttctaa gtttttcata ggtgacaggg gtgccatgtg gaatccttga cgcaaggcag
      661 gcattggatg gcttatcata tacagacaat ccaaagtgtt gagcaattgc tcttatgaca
      721 gatttatcta tgcccaattc caggaaagga ctccttactc cgttttcctt taatcctgtg
      781 attcctggtc tatattcttt cagatcatct aaattggtac cgtcgacaac tagatttgtt
      841 ttaaatttat ttgcctcatt cacaagcctt agacccaatt cttttctaca atgataacac
      901 cgtagctgat cgttctttac gaaatcagag ctttctaact cactatactt gattacttta
      961 tgtttaatac cgatctccct tgctactttt cttgctgcgg ataactcttg ataggagagg
     1021 gttttgtaat tagcggttac agataaagca ttatttccaa atgccctttt tgcagccaaa
     1081 gctagaacag cgctatccac gccaccagat aaagcaacaa ctgtcttgtc gccattactt
     1141 aaaaaccaat ctatcaatct ctttaaatca tcggtaggat gaacacctgt caatacacgt
     1201 cactacctag tcccgatctt ttgtagaatg tctgcattaa caatttccat cgttcttttc
     1261 aatgggatgc ctaattttga ggctatggcc tttatatctt caaattcggg tttggtattt
     1321 acaatatcac caactgtgtc ctttgcaatc tttacacgaa tattaaaatg gttgtcaagt
     1381 atatttactg gaacggtaat gatggttctt gggagaataa atctctgtat ctcttgaacc
     1441 cttacgcctg ttgatccaga ttctctgaat aacatctcta aaataccatc tagctgagtt
     1501 tggtcggtta taattctgag aagatgcatt ggtctatttt tctttgtcac gcctggaatt
     1561 gccgtcacat ctttcgcacc agcatctgtc aacagatcta ttagatttcc gatgatttcg
     1621 ccagaaatat cgtctacatt agtttcaata acaaagatgt tatctgtatt tgtttttaaa
     1681 actagtgacg agttgccaat cactaacctc aatagatttg gtatctgtct taattttttg
     1741 tggcccatac cgtaacccat tctttcagga gaaaaacaag gataatagtt gatacattct
     1801 gatgttaaat tgaccagcat tgccgcacca gttggagtag tcagttctcc ttccctctgt
     1861 ccgcctatta gggtaaatgg tttgcccttg aaaatttcaa gtataatatt acttgggttt
     1921 ggtatagttc catgtgaaaa tttcaaagtt ccaccaccca ctgcaatctt tgtcgaaaat
     1981 atgcgagaac taagaagtcc aagatcttgc aaggcagtag cgcaaccgac cagatcggca
     2041 aaggtatcta tgctcgaaat ttcgttt
//
LOCUS       DASQSJ010000264         2606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_55486, whole genome shotgun sequence.
ACCESSION   DASQSJ010000264 DASQSJ010000000
VERSION     DASQSJ010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55486"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(325..1056)
                     /locus_tag="VE223_05215"
     CDS             complement(325..1056)
                     /locus_tag="VE223_05215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21022.1"
                     /translation="MVIFTLVLVFSFYTVKPADAHLTKKFGNLSITVGWSNEPALVGE
                     LNNAIIQVNQTSGKTTTGVINALANMNILAKYGGVTKSIDFVPSEQTDGLYNGKIIPT
                     RIGSYSLVINGSIQGQKINTEVPLDEVQGKQQISFPDSSGSSDVAGGGGGGSATGAAS
                     NSNNVGPQLQGIVSQLSNDIDSTKNSVDTVAKNNVDTQKSIQDLKNAVDRTYMIGMAG
                     IGAGIAGIIIASVALSRKDILKVSS"
     gene            1206..>2606
                     /locus_tag="VE223_05220"
     CDS             1206..>2606
                     /locus_tag="VE223_05220"
                     /inference="COORDINATES: protein motif:HMM:NF025046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HZC21023.1"
                     /translation="MIPRFSHRRNQAVLLVLVITISLSLLILFPNGIPKSYAHAFTIK
                     SDPSPSQSLPKSPSKVDVYFSEPVDIRYSKLMVIDASGKQVDNKDEHYINGDQTTLSV
                     TLPGDLKDGVYTVSSKVLSAADGHVVDNAFVFGIGEAAIPTQASSTSNVQTQLYIPNA
                     IARFPALVGQVMVVGAAFSTLWLWKPISKIAWLKDSLAEMRNNIDRNFIILVLIGSII
                     LVVSNFGIIYVQANSINTGIVEAIGTKFGTVWIARAAESFILLAISLAMFRKAMKRTT
                     KNFAASPTKGEVLGIFAIGLTILATTSLIGHGAANGQVLPITIDFIHNLAASLWIGGI
                     IYIGFIVVPKLRHADGLEEYVKASALSILIPRFSTVPVIILGVIVVTGPFLLYMLESN
                     LDLTLASLYGKWLIIKLSLAAVMIALGGYNQIIVYRQALRASILSTTVRGTAGGGGEI
                     IEAKTNNNNNNNNNNGN"
BASE COUNT          792 a          475 c          486 g          853 t
ORIGIN      
        1 tatggtacaa cctacgaagc agatcaggaa atctccacaa tagccataaa tttgaattca
       61 cttgcaccaa gctgctagtg ctaacaaata tgaagatatg gagatactgc tgtaagaaaa
      121 atgataatga ttaactattc atactctata atgtatgatt tcttgtaact tatcaaaatg
      181 aataggttta ggattttatt cttttaatct gttaggatag tatggacttt tttattttaa
      241 gtgtcccaga ttatatatgt atatatattt tatgtataat tggagtcaag atctgacttc
      301 atttacttgt aatcaatcca catattatga tgaaacctta aggatatctt tacgagaaag
      361 agctacagat gctatgataa tcccggctat acctgcccct attccagcca ttcctatcat
      421 atatgttcta tcaacagcgt tctttaaatc ctgaatggac ttttgtgtat ctacattatt
      481 tttggccact gtgtctacgc tgtttttggt tgagtctata tcatttgaca gctgactgac
      541 gattccttgt agttgaggtc cgacattgtt actattactt gcagcccctg tagcactacc
      601 accaccccct cctcctgcta catcactgga accactacta tctggaaaag atatttgctg
      661 ctttccttga acctcatcaa gaggtacttc agtattaatt ttctgccctt gtatactacc
      721 atttataaca agactatatg acccaatcct agtcggaatt attttaccat tatataatcc
      781 gtcagtttgc tcagagggca caaaatcaat tgattttgtt actccgccat actttgccag
      841 gatattcata tttgccaagg cgtttatgac gccggttgtt gtttttccgc tagtctggtt
      901 tacttggata atggcattat tcaattctcc tacaagggca ggctcattac tccaaccgac
      961 tgttatcgac aggttaccaa acttcttggt tagatgggca tctgcaggtt taacagtgta
     1021 aaaagaaaaa actaaaacta aggtgaagat gaccaatatt ggtagtaaaa actgcatttt
     1081 tacttgcata taatgtatgg aatgaatcta attatttatt attctttact tgaagttcga
     1141 tagttgtact agaaaaatag gaaaaatcaa atatgttaat gatacagata tgatgatgat
     1201 ataacttgat cccaagattt tctcaccgtc gtaatcaggc tgttctatta gtgttagtca
     1261 ttaccatatc tttgtcatta ctgatattat ttcccaatgg aatacctaaa tcctatgctc
     1321 atgctttcac gataaaaagt gatccctctc cttcgcaatc actgcccaag tcgccgtcaa
     1381 aagttgacgt atactttagc gaacctgtag atattcgtta tagtaaacta atggttatag
     1441 atgcaagtgg aaagcaagtt gataacaagg atgagcatta tatcaacggt gatcaaacga
     1501 cattaagtgt aactcttccc ggtgatctca aagatggagt atacacagtt tctagcaagg
     1561 ttctttctgc tgctgatggc cacgttgtag ataatgcttt tgtatttggc ataggagaag
     1621 ctgcaattcc cacccaagct tcaagtacat cgaatgttca aacgcaactc tatataccta
     1681 atgctattgc aagatttccc gcattagtag gccaggttat ggttgttggt gcagccttct
     1741 cgactctctg gttatggaaa ccaatatcaa aaatcgcatg gttgaaagat agtctggcag
     1801 agatgcggaa taatatcgat agaaatttta taattcttgt gctgattggt tctattattt
     1861 tagtggtatc taattttggg ataatttatg ttcaggcaaa ctctataaat actggaatag
     1921 ttgaagctat tggaactaag tttggcactg tgtggatcgc aagagcggcg gaatcattca
     1981 tattgcttgc gatttccttg gccatgtttc gtaaggcaat gaaaagaaca acaaaaaact
     2041 ttgcagcttc tccaacaaaa ggagaggtac taggcatatt tgcaattggt cttacaatac
     2101 tcgccaccac aagtttgatt ggtcacggcg ctgccaatgg tcaagtacta ccaataacaa
     2161 ttgattttat acataatttg gcagcatcac tttggattgg cggaataatt tatattggat
     2221 ttattgtggt tccaaaatta agacacgcgg atggtttaga agaatatgtc aaggcctctg
     2281 ctctatcaat tttgattcca cgattttcaa cagtccctgt aataatactc ggggttatag
     2341 tagttactgg tccgtttttg ttatacatgc ttgagagtaa tctagattta accttggcct
     2401 cattgtatgg aaaatggcta attataaaac tctcacttgc tgcagtcatg attgctctag
     2461 gaggatacaa tcagataata gtatatagac aggctctgag ggccagcatc ctttcaacga
     2521 ctgtcagagg tacggcagga ggagggggag agataattga ggctaaaact aataataata
     2581 ataataataa taataataat ggaaat
//
LOCUS       DASQSJ010000265         2588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_230691, whole genome shotgun sequence.
ACCESSION   DASQSJ010000265 DASQSJ010000000
VERSION     DASQSJ010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230691"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1474
                     /locus_tag="VE223_05225"
     CDS             <1..1474
                     /locus_tag="VE223_05225"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HZC21024.1"
                     /translation="YVILLFFIGILAAITHLYNPIGFPPGPSNDESIYMRRSMHVLTG
                     QGPQEGSLYDHPYFSQLFLASTLGVIGYPKSSYPFLGSLQSVETLYLIPRVLLGILAI
                     IDTFLIYKIAGNLYGKKVALIASILFAVMPLTWLIRRVWLEPIQLPFILSSILFATYI
                     KINDKTNENKSNKLNLAVLFSGVFLGLAIFTKIPAITMIPLVAFLIYTGRNNLKRLLL
                     LFIPVILIPLIWPAYAIYNGQFDFWLSGVLWQTHRGIHTFFSSLIYDFNIDPLLIVLG
                     ISGAVFAALKRDFFLLFWFIPFLMFLYLIGFVSYWHIVPLLPALCIAAARLLEFLFNV
                     ASRKKTYQKLITSIVITAVGMFGLINTILLVIPINHNSAYFEAAAFIIKYLRSSSSSD
                     ITVISNPFYSWIPQSILNLDYNYVDYYNGDISVKTHKVLLIVDPALIYILKNHEAADL
                     IQKNFNLYTANRIAYFVGSPNRNDQVSVYLYESNANGKAK"
     gene            1779..2033
                     /locus_tag="VE223_05230"
     CDS             1779..2033
                     /locus_tag="VE223_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21025.1"
                     /translation="MFRHPLTCCSGSCILVGCTADDENPKISRAFAGSVLRMHNTPTA
                     NNVDANNRSTPIPARSEKLNMLQEILSVRINDLRNYQHIV"
BASE COUNT          747 a          503 c          478 g          860 t
ORIGIN      
        1 atatgttatt ttactcttct ttataggaat attggcagca attacacatt tgtataatcc
       61 tatcggattt cctcccggcc catctaatga tgaaagtata tacatgcgta ggagtatgca
      121 cgtattaaca ggccaggggc ctcaagaagg atcactatac gatcaccctt atttttcaca
      181 gctatttttg gcaagcacat taggagttat tggatatccc aagtcatctt atccatttct
      241 tggaagtctg cagtcggttg aaacgctata tctcattcca agagtgttat tgggaatcct
      301 tgctataatt gacacctttc ttatttacaa aatagctggg aatctatatg gcaagaaggt
      361 cgcactaatt gcttctattc tatttgcagt gatgccgtta acttggctga tcagaagggt
      421 ttggttagag cctattcagt tgccatttat tttatcttca atattgtttg caacgtatat
      481 aaaaataaac gacaaaacga acgaaaataa gagtaacaaa ctaaatttgg cggttttatt
      541 ctcaggtgtt ttcttaggtt tggcaatatt tacaaaaatt cctgctatta ctatgattcc
      601 gctggttgcc ttccttatct atacaggtag aaataatttg aaacgtctat tactgttgtt
      661 tatacctgta atattgatac cgctaatttg gcccgcatat gccatctaca atggccaatt
      721 tgatttctgg ctgagcggtg ttctgtggca gacgcataga ggcattcaca cgttctttag
      781 ttccctgatc tatgatttta acatcgatcc attattgatc gttttgggca tatccggtgc
      841 tgtatttgca gccctaaaaa gggatttttt tcttttattt tggttcattc catttctcat
      901 gtttttgtac ctgataggat ttgtttctta ttggcacata gttcctttgt tacctgcact
      961 ttgtattgca gccgccaggt tgctagaatt tctgttcaac gtagctagta ggaaaaagac
     1021 ctaccagaaa ctgattacgt ctatcgtgat cacggccgta ggaatgtttg gattaataaa
     1081 caccattcta ctcgtaattc cgataaacca taattctgct tactttgaag cggcggcttt
     1141 tattataaaa tacctacgtt ctagcagcag tagcgatata accgttatct caaacccatt
     1201 ctattcttgg ataccgcagt ctatacttaa cttggattat aattatgtag attattacaa
     1261 tggcgatata tcagtcaaaa cccacaaggt tcttttgata gtagaccctg cattgatata
     1321 tatactaaag aaccatgaag ctgccgattt aatacagaag aactttaatt tgtataccgc
     1381 aaacaggatt gcttactttg tggggagccc caaccgaaat gatcaggtct ctgtttacct
     1441 ctatgagtca aacgctaatg gtaaagcaaa gtaatttatt tagcggttca tccagaatgt
     1501 aaccttcctt ctatacaaat ctatacgcaa gagcaggaaa ttgcctatca tgatgaggga
     1561 agcggaagtg gggaggccag ctgataggca agtgaatcag actcggttag aattgtagtt
     1621 ttaacaaaaa caagtcatct tgaggtataa atcaggactt cattcaaaat tataaaatcc
     1681 tataggctgt gcgttgattt gcattgacgg acaatcgtta tgttatctaa gggaacggta
     1741 aaacgaacgg aattgtctgt tcatgggaac aggtagaatt gtttcggcat ccgctgactt
     1801 gttgttctgg aagttgtatt cttgttggat gcactgcgga tgatgaaaac ccaaagatat
     1861 ctagggcttt tgctggttct gtgctcagga tgcataatac tcctacagca aacaatgtag
     1921 atgcaaataa cagaagtact cctatccctg cacggtcaga aaaactcaat atgctacaag
     1981 aaattctttc tgttcgtata aatgacttga ggaattatca acacatagtt taacgccgta
     2041 tcatttacta gaaaaagaat aaagcaattg aataagattg aatatgttgt tccaattaat
     2101 caaatagggc tggatacaga taccgcctaa acgggaaaga gatatcaatc tcacctatcc
     2161 taggcccttc ggtcctaatc gagtccaact actttacttt aaacatcata cacaacatag
     2221 gggcggtggc tgcaacaaga cacaatgtaa tgttgccttg gtaccggcgg catagttatc
     2281 tggtaatttt taatttttaa cccacaacct acttttcgta ataccgcata tctgttgtat
     2341 atgtgattct tgttgcttct ttcttgctct taaacttgcc ttatattttc tgtttcttgg
     2401 tctcgtcctt aatctgtatc cacaacaagg acactatatt ccatcccatt ttataaatat
     2461 ctcacatatc tgacaacgct tttgtccact agtataagga ccagacttag atggtttttg
     2521 tgctttatga cgtatgcata tgcccttaca agtcatattc tttctttatg ccaatcctcc
     2581 ttctagct
//
LOCUS       DASQSJ010000266         2321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_532445, whole genome shotgun sequence.
ACCESSION   DASQSJ010000266 DASQSJ010000000
VERSION     DASQSJ010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_532445"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(342..524)
                     /locus_tag="VE223_05235"
     CDS             complement(342..524)
                     /locus_tag="VE223_05235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21026.1"
                     /translation="MNNKYTKLAAIVAAIITTATLASAMVLLSSTTFQAATAVIDTST
                     GERKAVPMATLGDNNV"
     gene            1011..1727
                     /locus_tag="VE223_05240"
     CDS             1011..1727
                     /locus_tag="VE223_05240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21027.1"
                     /translation="MGKKATGLGVTEFFLRLMAWLCLRNDHYKNSQMCIVTGPNIDIA
                     IKLIKRMKALFEPKLGISFDTKETVLELNGCTIEAYPSNHIDAYRALDNPKFILIDEG
                     DFFRKGEQEDVRHVSERYITKSDPYMVMVSTPNSPDGLFGRIEKEPEDTCIYKRLFLD
                     YTYGIGKIYTADEIERAEQSPSFEQEYNLKYLGRIGNVFHTKDIEAAIEKGRKYNPDD
                     YNPIITLLYIKINGNRPSIW"
     gene            1847..2050
                     /locus_tag="VE223_05245"
     CDS             1847..2050
                     /locus_tag="VE223_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21028.1"
                     /translation="MSKYQVDKTYIDGANPSFIKSLKLQIGEEADYDKVIARYKSEGF
                     GDDAALKDMKIVPVNFNKEYKQC"
     gene            2061..2255
                     /locus_tag="VE223_05250"
     CDS             2061..2255
                     /locus_tag="VE223_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21029.1"
                     /translation="MILEHEPRKIAINPDRFDKLITALRTAVDNDGTLDKETTSYNDM
                     FDAFRLSLKFYHFGEIGSNY"
BASE COUNT          826 a          377 c          441 g          677 t
ORIGIN      
        1 aaagtgaaag cttgttttat tactgcttat gatgtatatt acaaatcatt aagagagata
       61 tatcctgact ttgaagtaga ttgctttatc acaaaaccaa ttcaaaatga agatctacta
      121 aaagcagtac aagatatgac accagcaata aaagatacat ggtaactgca ttcattactt
      181 cttgtatctt tgttgatcac gtcttctatg tgtattatat agctgtcaat atcatcaatt
      241 tctgcatcct gtgaattaga tttaggggta ttgctcaagt tcattttatt gcccaaatgt
      301 ctttccacct tgacactttg aacattacct caccaagtaa cttagacgtt attatcgcct
      361 aaagtggcca ttggtactgc tttcctctct cctgtggatg tatcgattac agctgttgct
      421 gcttgaaatg ttgttgagga taacaagacc atagcagatg ctagcgtcgc agtagtaatg
      481 attgctgcta caatagctgc tagttttgta tacttgttat tcactataat ttcactatgt
      541 aagagggttc tatataagga cggaactata cttacgaatt taagagaccc agcagatccc
      601 aaaggataaa gctgatcata ggctaattac attcatcgag tcgggagctg ataatcagat
      661 cctgaatagg actgaaaaga taaagctgac tcaatagcat tagtattcgt tcaaagtggt
      721 aatagtattc aaggacttac aaaagcttgt ttcgcataag cagaaataaa acacacgtaa
      781 agagctattc caaaggctaa aagacaaaca attttggata tgggacaaac aacagcacaa
      841 gcaagaacat attaaaacat atggagactg ctgctttacc acattattgg cttacctact
      901 aaagaaacaa tagaaaaacc aatgtttgat tatgagaaaa tattgtatga ctcactttta
      961 gataacgaga gttgtaatgc tctaaatcat actttcaagt acaaacatct atggggaaaa
     1021 aagcaactgg gttaggagtt actgaatttt tcttaaggtt gatggcatgg ctttgtctgc
     1081 gaaacgacca ctacaaaaat agccagatgt gcattgtaac tggacctaac atagacattg
     1141 ccataaaatt aatcaagaga atgaaagcat tgtttgagcc aaagctagga attagttttg
     1201 acacaaaaga aacagtactt gagctaaatg gctgtactat tgaagcatat ccgtcaaatc
     1261 acatagatgc atacagagca ttggataatc ccaaattcat cttaatagat gaaggggact
     1321 ttttcagaaa aggagagcaa gaagatgtaa gacatgtatc tgagcgctat attacaaagt
     1381 cagatccata catggtaatg gtttcaactc ctaattctcc agatggtttg tttgggagaa
     1441 tagagaaaga accagaagat acatgcattt acaaacgtct ttttctggat tatacatatg
     1501 gcattggtaa aatatacact gcggacgaaa tagaaagagc cgagcaatca ccttcatttg
     1561 agcaagaata caatctaaaa tacctgggca gaataggaaa tgtatttcac acaaaagaca
     1621 tagaagcagc aattgagaaa ggcagaaagt ataaccctga tgattacaac cccattatta
     1681 cactccttta cataaaaatc aatgggaata gacccagcat atggtagttc ggcttttggt
     1741 atagtggtaa cagagtgggt tgatggaata gtacagatat tgcatacatg ctgaagaata
     1801 tcacagacct gactataatg agatgttatc tgtggtgtat ggattaatgt caaagtatca
     1861 ggtggataaa acatacattg atggtgccaa tccttcgttt atcaaatcgc tcaagctgca
     1921 gataggtgaa gaagcagatt atgataaagt aattgccaga tacaaatcag aaggatttgg
     1981 agatgatgct gctcttaaag atatgaaaat agttcctgtt aacttcaata aggagtacaa
     2041 gcaatgttag gacattgcaa atgatactgg aacacgagcc tagaaaaatt gctatcaatc
     2101 cagataggtt tgataaactg attactgcat taagaacagc agttgataat gacggtacat
     2161 tagataaaga aactacatct tataacgata tgtttgatgc atttagacta tcattgaagt
     2221 tctaccattt tggagaaatt ggaagcaatt attaagttat gtatacaata taaggtaggt
     2281 cacatcgatc tttactctat tctattaaat gctattttat t
//
LOCUS       DASQSJ010000267         2536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_510009, whole genome shotgun sequence.
ACCESSION   DASQSJ010000267 DASQSJ010000000
VERSION     DASQSJ010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510009"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(286..780)
                     /locus_tag="VE223_05255"
     CDS             complement(286..780)
                     /locus_tag="VE223_05255"
                     /inference="COORDINATES: protein motif:HMM:NF021350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA-associated domain-containing protein"
                     /protein_id="HZC21030.1"
                     /translation="MEIPAVHYSVLLGFLEVLDDIGNKSDVAGIASKQGLELDDLLPI
                     LESGEMLGLIQVRAGDVSITEKGHLFIVASPKVRKKILRETLIELDVFKKLVELIRQS
                     ENGHIIKSDVLEFISSRNTSATDSDRSNEFDWLIEWGRQALILTYDSNKESISIRQQR
                     NQKY"
     gene            complement(1029..>2536)
                     /locus_tag="VE223_05260"
     CDS             complement(1029..>2536)
                     /locus_tag="VE223_05260"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HZC21031.1"
                     /translation="GFFPAAIAFFIAIFNGSAIGIELAAIFLIFTSMVWNMIFSVYES
                     VLSIPSELLETTHVYRANPILQFRRLYLPASIPKLIYNSIVSWAGGWYFLTAAEIISL
                     GSKTFTLQGLGSLLGNSVSSGQYVQALVALATLISIIMLTDFFFWRPLESYATRFKYD
                     YSSSDMDGPRRHHYHFGLALRKAAFPSIHLSYLSFRNPRPLLHLKSNRLIEIMTKIAY
                     GAELRVFPAIHKWFDDKRNLRTFEYIALPVLIALALLLIIFDGEVIYKSFSALSNMYL
                     SLYDDPRSVKIVSQIPLALLLSYLRISAAYLITLAWTIPVAIRIAHNPRFDLIMPLFQ
                     TFAAVPATAFFPFVVILVNYVPGGFEFLSILLILTGMQWYVLFNLIGGVRSISGDIEE
                     TARAFRTTKALYIRRVLFPSIYPSFITGSITGWGGGWNSLIVAEYLVFGNYKYSVLGM
                     GSLLDKAAYDVGNTILLLLIVGVMSAVIVTINRLVWRRLYRKVIRKYSMSS"
BASE COUNT          819 a          479 c          488 g          750 t
ORIGIN      
        1 ccgccagcga cacatagaca tattacagaa aagatacatt tttagcatca tcaaatgcca
       61 gatcacaaaa gcagagccat taattaaaaa atatcagact aaagggtacc ttaccaacaa
      121 tgagtttctt gagcttttga aaataaaatc agaatatgac aagggtagag gaagatagga
      181 gagatccact gaggatgaag aatatgatga taataatatt tgtgataacg ttaaatcaat
      241 aattgaagaa tctaggccga cttgtattga acagggtgaa aatgactaat acttttgatt
      301 acgttgttgt cttatactga tactctcctt gttagaatca taagtcagga taagtgcttg
      361 tcttccccat tcaatgagcc agtcaaattc atttgatcta tcgctatccg tagctgatgt
      421 attacgacta gaaataaatt ctaagacgtc actctttata atatgcccat tttcactttg
      481 tctgatgagt tcaactaatt tcttgaatac atccaactcg atgagtgttt cccgtaatat
      541 tttttttctt acttttggac tagctactat aaataaatgt cctttttcag ttatggatac
      601 gtcgcctgcc cggacttgaa tcaatcctaa catttctcct gactcaagta ttggtagaag
      661 atcatctaac tccagacctt gtttagacgc aatacccgct acgtctgact tgttacctat
      721 atcatccaac acttctaaaa atccaagaag aacggaataa tgaactgccg gtatctccaa
      781 cttttttgta tgccataatt atttaattta tcagtgattt aaatttttat ttttaaatta
      841 agggggtcca tggtgtagtg aactggataa ttatcagaat gatgtcatca cacactaacc
      901 tggaagcgtg tgtcgcctga cttaagtcgt tacaatcaca attattccta ccaagtcata
      961 tttgctattt catagaaaat ttacgttaaa gaggcgaata ataataaaga aacaaacttt
     1021 ccaataactt agctgctcat gctatatttt cttattactt ttctatacag tcgtctccac
     1081 actaaacgat tgattgtaac gattactgcc gacatgacac caactatcaa aagtagcagt
     1141 atggtatttc ctacatcgta tgcggcctta tccaaaagag atcccatgcc aagtacagaa
     1201 tatttgtagt ttccgaatac aaggtattcg gctactatca aagagttcca tcctccgccc
     1261 caacctgtga tgctgccggt tataaatgat gggtatattg acggaaacag gacccgtcta
     1321 atgtacaggg ctttagtggt tctgaatgct cgcgctgttt cttctatgtc tccggatatt
     1381 gagcgcactc caccaattag gttgaataac acgtaccatt gcattccggt cagtatcaac
     1441 aatatggata gaaattcaaa tcctcctggt acgtaattta caagtatgac cacaaatgga
     1501 aagaatgcag tagcagggac agcagcaaag gtttgaaata ggggcataat aagatcaaac
     1561 cttggattgt gtgcaatcct aatggctaca ggtatagtcc atgccaacgt aataagatag
     1621 gctgctgata ttcttagata agacagtaaa agtgctaggg gaatttggga aacaatcttt
     1681 acgctacgtg gatcatcgta gagtgataaa tacatgttag agagagcaga aaaggatttg
     1741 tatattactt caccgtcaaa gatgataagc aaaagcgcaa gcgcaattag aactggtaat
     1801 gcgatgtact caaatgtcct gagatttctc ttatcgtcaa accatttatg gatggcagga
     1861 aatactctta gttcggctcc atatgctatt tttgtcatta tttctatcaa cctgtttgac
     1921 tttaagtgta acagaggtct tggatttcta aacgagagat atgataggtg aattgatgga
     1981 aatgcagctt ttctcagtgc aagtccaaaa tgatagtggt gacgcctagg accatccata
     2041 tcagaggaag aataatcata tttgaagcgg gtggcatatg attccaaggg ccgccaaaag
     2101 aagaaatccg tcaacataat aattgaaatc aatgttgcca gtgctactaa ggcttgtacg
     2161 tattgtccag aagaaacaga attaccaagc agactgccta acccctgcag tgtaaatgtc
     2221 tttgatccta aggatattat ctcagctgcg gtaagaaaat accatccgcc ggcccaagag
     2281 acgatactat tgtagatcaa tttaggtatg ctggctggaa ggtagagtct tctaaactgc
     2341 aaaatggggt ttgctctata gacatgagtt gtttcgagta gctctgatgg aattgagagt
     2401 acagattcat agactgaaaa tatcatattc cacaccatgc tagtgaatat caggaatatt
     2461 gccgctaact cgattcctat tgcgctcccg ttgaatatgg ctataaaaaa tgcgatggct
     2521 gcaggaaaga aaccaa
//
LOCUS       DASQSJ010000268         5147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_150734, whole genome shotgun sequence.
ACCESSION   DASQSJ010000268 DASQSJ010000000
VERSION     DASQSJ010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_150734"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            314..577
                     /locus_tag="VE223_05265"
     CDS             314..577
                     /locus_tag="VE223_05265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21032.1"
                     /translation="MSLFPNEDVLTKEIESWKGFAGSLQSQIYKELFNKMLNDCYKYV
                     IAINAKGDPFPTEPFLMSLLLSQHKIIEWLTDQVSDHQMIKVG"
     gene            683..1063
                     /locus_tag="VE223_05270"
     CDS             683..1063
                     /locus_tag="VE223_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21033.1"
                     /translation="MLFFKTSANIRWKKISHTWRTPTYEQQKFLRSSIISSGLNATPV
                     IDRFYFHSVYFREPGRILFEIATNRPGFTTDEKVEELGSKLMLPPWLEPEHKDLEKIL
                     PQLHLPKPRGKSAKTKTQFADEDK"
     gene            1953..3527
                     /locus_tag="VE223_05275"
     CDS             1953..3527
                     /locus_tag="VE223_05275"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HZC21034.1"
                     /translation="MLISAAKSAAISSLKFPFHLNGHQLYAVDAWILGGMRGSIIYSS
                     GTGKTEIAFECARRAAAAAMNTLNKQEVRAGSLFLPSTSSFQSQSFDIVFLVPRIVLI
                     NQNLKRLVNYGVSREKIGVYFGEQKEINKEITISTYQSVIRVPSLIRKSKMVVFDEVH
                     LVSDSAKVLRNIFDVVIEDHTKALLGLTATINEKISKYNTILTVLPPVKKYLLKEAVE
                     DGRLTRPVVIPIKVKLTEEERKLYDIFSTKIKNISDRFKRYDANSMTLLLKKGGFASG
                     MAKAWFSNVRKRKALLASADNKISAVVDVILSKHSNQRIMVFSETLESINKLKSKLKS
                     EHVSSTVIDSRINSLDRQKILSGWGKDFYVLLSVHTLEIGYDVPEVGVEIILATTSNI
                     NQVIQRIGRIVRKYEGKKRALIYVVYACETKDDVILEIVRRAVEMDETKPVTNREPQD
                     LRIKRAYDILELNSYEPTIIQDSNYNQKLFHVRSGKEKDKFYEVNTELKTCSCPDFEF
                     KALRCKHIIAAEITKS"
     gene            complement(3782..4465)
                     /locus_tag="VE223_05280"
     CDS             complement(3782..4465)
                     /locus_tag="VE223_05280"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HZC21035.1"
                     /translation="MSFQDRKDAAEQLVKKLEQWLEKNKTIEEQKNSDSSVILAIPRG
                     GVVIGDILSSILDIKLDIIVSRKIRAPDNPELAIGAVMPDGRYFLNQDIVNMLKVTQR
                     YIEAEVNIQRSEIENRLLLFRGNKYYELNDKTVILVDDGIATGSTIFAAAKWTTNNQK
                     CKELVVAVPVAPPDTINKLKKEVSDKVIVLYTPELFSAVGQFYENFEQVTDDTVKEIM
                     KRHGYAVKN"
     gene            4762..4971
                     /locus_tag="VE223_05285"
     CDS             4762..4971
                     /locus_tag="VE223_05285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21036.1"
                     /translation="MIKTMNKVLFITAVALVFASALVSTGVMQSAHACPDKSSAATSK
                     VNPATPSNAQLTQPSSPQLAIGHTA"
BASE COUNT         1650 a          904 c          977 g         1616 t
ORIGIN      
        1 agaaaattcg taaaacatat tgaagatgat tttgacacgc cacaggcatt agaaattatg
       61 gcagatgcca caaagagcga atcatcgatt attgctttga ggaatatggt gagtatattc
      121 ggtcttagat attgaactta gactccctac tattatagcc cgtgatgaaa tagttgcaaa
      181 atgctctgct aataaatcaa gatttaattt tattatctgt agttctcttt tcaaattttt
      241 ttagtcagct gagaagaact ccctccctgt agggagctcc tacttttata aagaacagca
      301 agatcttggc attatgagtt tatttccaaa tgaagatgtt ttgaccaaag aaattgaatc
      361 atggaagggt ttcgcaggta gcttgcaatc acaaatatac aaagaattat tcaacaaaat
      421 gttaaatgac tgctacaaat atgttattgc aattaatgct aaaggcgatc cttttcccac
      481 tgagccattc ctcatgtcgc tcctactatc acaacataag ataattgaat ggttaactga
      541 ccaggtgtca gatcatcaaa tgataaaggt tggttagata ttgaagccac tgcggcttcc
      601 aatatatgga caataattcc ggtatgttgt ccgcctacca ggcttgcata ataatcaact
      661 actttgtaag ttttgaataa atgtgctttt ctttaaaaca tctgcaaaca taagatggaa
      721 gaaaatatca catacatggc gtacgccaac ttatgaacaa caaaagttcc tgcgtagtag
      781 cataatcagc tcaggattaa atgcaacacc tgttatagat cgattctact ttcattctgt
      841 atattttcgt gaaccaggcc gtatcctctt tgaaattgcc acaaataggc caggatttac
      901 aacagatgaa aaggttgaag aactaggtag taaactcatg cttcctcctt ggcttgaacc
      961 tgagcacaag gatcttgaga aaatcctgcc tcaattacat ttaccaaagc caagagggaa
     1021 aagtgctaag actaagactc aattcgctga tgaggacaaa taaaaacaaa atggagaaaa
     1081 aggctaagct tggattcaat cgttgtttat tccttagcat acactagtac tctctttact
     1141 tcatgatact gtaggtaaaa agaagatacg attccgctcg gacagcaaat acgtccggag
     1201 gcggctatgc ttagtcctcg aggcaaagtg ttgaagaata gaatgtctcg cgcttttcgg
     1261 cggctagctg aaggagtttt gatatagacg atctgaaatt ccgtactaat gaattgtcgg
     1321 attttgcaaa tgattcgtca aaggcatatg gcttcaataa gcaacgcata tagccgtagg
     1381 tgttataatg gtgcaaatat agcatccagt ttattattag ttcgtacagg aatactatac
     1441 tgtgttatct ttttagtgct tatggttcta cttcaaccaa agggagggtc tttctggctg
     1501 gaaaaagagg tcataaattg agaatggagg aggttaagaa agcagaagaa tggttatctt
     1561 ctttcaagta atattatata tttgcgttca agacattgcg cctatatgta atattctggg
     1621 tcgtccttgc tatttctgtt tatcgatacc tttgaatgaa gctgttgtgt aaggattgta
     1681 ttattcggaa cctattttac ctattttaat acattaaact aaaatgaact taataacgtg
     1741 ataatggtgg gacgtgttgt agcaccagta cttttactaa gtcgaccccc tctccgttct
     1801 acttgagtgc tctttcttaa tatgttggtt atgcattctt tggttgttat aaaggaaatg
     1861 aaaactgaaa ttgcactact cccatgcact actatgaccg tccctcagac atgcacttca
     1921 aagttctttg tttgtactaa attgaggtgc ttatgttgat ttcagctgcg aaatccgcgg
     1981 ccatatctag tctaaaattt ccttttcatt taaatggaca tcagctttat gcggttgatg
     2041 catggattct aggtggaatg cggggttcaa tcatatatag cagtggtaca ggtaaaaccg
     2101 aaatagcatt tgaatgtgca agaagagcag cagctgctgc tatgaatact ctaaacaaac
     2161 aggaggtaag agcaggctca ctatttttac cttcaacttc atcgtttcaa tcccagtcat
     2221 ttgatattgt ttttctagtt ccacgtattg ttttgatcaa tcaaaatctc aaaaggctgg
     2281 ttaattatgg ggtttctaga gaaaaaatag gggtgtattt tggagagcaa aaagaaatta
     2341 acaaggagat aacaatcagt acatatcaaa gtgtaatccg cgttccctct cttattcgca
     2401 aatccaagat ggtggtcttt gatgaagtgc atttggtaag cgatagcgct aaagtactac
     2461 gtaacatatt tgatgtggtc atcgaagatc acaccaaagc tcttttaggt ctgactgcaa
     2521 caataaatga aaagatttca aaatacaata ccattttgac agtcttgcct cctgttaaaa
     2581 aatacttgtt aaaagaagct gtcgaggatg gcaggcttac aagacctgta gtcattccaa
     2641 taaaggtaaa gctcacagaa gaagaacgga aattatatga tatcttctca acgaagatca
     2701 agaatatctc tgatcgtttt aaaaggtatg atgctaattc tatgactcta ttgctaaaga
     2761 aaggcggttt tgcttcggga atggcaaaag catggttttc aaatgtcaga aagagaaagg
     2821 ccttgcttgc tagtgcagat aataagatat ctgcagttgt ggatgttata ttaagtaagc
     2881 actcaaacca aagaatcatg gtttttagtg aaacactcga gtctatcaat aagctaaaat
     2941 cgaaattaaa atcagaacat gtcagctcta ccgtaataga cagcaggatt aattcattgg
     3001 ataggcagaa aatattgtct ggatggggta aggatttcta cgttttgtta tctgttcata
     3061 cattggagat aggatacgat gttccggaag taggagtaga aataattttg gcaactacat
     3121 caaatattaa tcaggtaatt caaagaatag ggaggatagt aaggaaatac gaaggaaaga
     3181 agagggctct gatatatgtc gtttatgcat gtgaaaccaa agatgatgta atcttggaaa
     3241 tagtaaggag ggctgtagaa atggatgaaa cgaaaccagt aacaaataga gagccacaag
     3301 atctgcgtat taagagagcg tacgatatat tggaattgaa ttcatatgaa ccgacgatca
     3361 tacaagactc aaactataat caaaaattat ttcatgtaag aagcggtaaa gaaaaagaca
     3421 aattctacga ggtcaataca gagttaaaaa cgtgttcgtg tccagatttt gaatttaagg
     3481 ctttgagatg caagcatatt atcgcagctg aaattacaaa gtcttgaacc ttacttttgg
     3541 cttaataccc taaagcaagt gtcatgtaat agtaacactt tttggactag aattcaataa
     3601 tttttgttat gctcatatag accgtacggc acatttccgc aaaaatgaaa ctgaacattt
     3661 gcacaatgct attaatgtac tggtcttccc tacattcctt cgatatattt gaatagtatc
     3721 ccttttttct tcattgtgaa ttagctatga taaatcgacc aattgaatgc ctctagagtt
     3781 atcaattctt gactgcatat ccatgtcttt tcattatttc ctttactgta tcatcggtaa
     3841 cttgctcaaa attttcgtag aactgcccga ctgcactaaa tagttctggt gtataaagca
     3901 ctattacttt atctgatact tcttttttta gcttatttat tgtatctgga ggtgctacag
     3961 gaactgccac aaccaattct ttgcattttt gattgttagt tgtccatttt gccgcagcaa
     4021 atattgttga tccagttgca ataccatcat cgactaatat taccgtcttg tcatttagct
     4081 catagtactt attacctcta aaaagtagta atctattttc tatttcgctt ctttgtatat
     4141 ttacttcggc ttcaatgtat ctctgagtga cttttaacat attcacgata tcttgattta
     4201 ggaaatatct accatcaggc attacagcgc ctattgcaag ctcaggattg tcaggcgcgc
     4261 gaatttttcg tgaaactatg atgtcaagct taatatcaag tatggatgac agaatatcgc
     4321 caataactac tccaccccgc ggaatggcta aaatgacaga agaatcagaa tttttttgct
     4381 cttcaattgt cttatttttc tccaaccatt gttctaattt cttgacaagt tgctccgcag
     4441 catctttcct atcttggaac gacattatct agttccatac attctagacc ataaaaggtc
     4501 gactataaat aagcttaaat aggcttatga aagaataaag aggtcattat tgatactcat
     4561 cctatctact gatggcaact tatcgatatg taatatcttt tcaactgcaa ggcttagtac
     4621 taaccgatag gcaaagaaaa cagaaaactt aggacaataa tagtgaatat agacacaatg
     4681 ctctgtttaa gaagccattt ggtgggttat gtggatgaga tcatgattat tatatcaaat
     4741 cttttatata ttgtaacttc aatgataaaa acaatgaata aggtactctt cataactgca
     4801 gtggcattag tgtttgcaag cgcgcttgtt agtaccggtg ttatgcaatc agctcatgcg
     4861 tgccctgaca aaagcagcgc cgcaacatca aaagtgaatc cggctactcc gagtaatgct
     4921 caactgacgc agccgtcgtc accgcaatta gcaataggcc atactgccta attttatttt
     4981 attgtaattt gctatgtaaa attcccattg ttgatatagc agatttctgg tgaataagga
     5041 tatgaagtat catttataca aaccaccttt ggtttcattg ctcttagtat gcaccaccta
     5101 tccttgtcag aatcagcagt gaagatggat ttgttggccg atatatt
//
LOCUS       DASQSJ010000269         2790 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_373203, whole genome shotgun sequence.
ACCESSION   DASQSJ010000269 DASQSJ010000000
VERSION     DASQSJ010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373203"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1380
                     /locus_tag="VE223_05290"
     CDS             <1..1380
                     /locus_tag="VE223_05290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21037.1"
                     /translation="VKQQQQQQSSSKYSTYFDTFYNTTRSLNNASSFFSSSHSNAFIP
                     YQRPSARSTGMKPSSSSSAPAPQQDLLSQMITEFSLEYARELARKAASSAATTTIAST
                     PQPNMQSSPIQGSLLYNPILDVHKQQQEEEEDVFGYRFEICKDCLYTEPLKVSFGKGG
                     TKDNSNNSTNNSNNNNGAVDGVVPRKEQKHVCNPKVVASNRKEVQDIEGSVKTMVDNL
                     PKIASRMTKWSINSQNKRISLIAVRIPHKIKNNDHEDNYNNIAGNTSADDNNDDDDDN
                     DIQPQQDIIVIPNPKNPKQQITFQCSEEKHINLSLISNETSKNHYAARAIKYGHPILT
                     NEEMEDFLNMVQTSTFAIFKIHKPSPTTATASSLQHLQQQQQHHHHHKQQDEPIGLYF
                     LAIIPYDDILLYLQSWLPNEINDSNDSNNNKSIQSNSANEDFLSLCNHLANISNFTIP
                     MRSPSSSSV"
BASE COUNT          987 a          538 c          431 g          834 t
ORIGIN      
        1 gtaaagcaac aacaacagca acaatcatct tcaaaatata gcacgtattt tgatactttt
       61 tataacacaa ctagaagcct aaataatgct tcatccttct tttcttcttc tcactctaac
      121 gcatttatac catatcaaag accctcagct agaagtactg ggatgaaacc atcttcatct
      181 tcatcagcac cagcgccaca acaagatcta ctaagtcaaa tgataactga attttcttta
      241 gaatatgcta gagaactagc tcgcaaggca gcatcatctg ctgctactac cactattgct
      301 agcacacctc aaccaaatat gcaatcatct ccaattcaag gtagccttct ctataatcct
      361 attttagatg ttcacaaaca acaacaagaa gaagaagaag atgtatttgg ctatagattt
      421 gaaatctgca aggattgcct atatacggaa ccactaaaag ttagttttgg taaaggtgga
      481 acaaaagaca atagcaataa cagcactaac aacagcaata acaataatgg tgctgttgat
      541 ggcgttgtac cacgaaagga gcaaaagcac gtctgtaatc ccaaagtggt agcctccaat
      601 agaaaagaag tacaagatat agagggcagt gtaaagacaa tggttgataa cctaccaaaa
      661 attgcaagta ggatgacaaa atggtcaatt aatagtcaaa acaaacgtat ttctttgatt
      721 gccgtcagga tacctcataa gattaagaat aacgatcatg aggataatta taacaatatt
      781 gctggcaata cttctgctga tgataataat gatgatgatg atgataacga tatccaacca
      841 caacaagata ttattgtaat accaaatcca aaaaatccaa agcaacaaat cacatttcaa
      901 tgctcagaag aaaagcatat caatctctct ctaatatcaa atgaaactag caaaaatcac
      961 tatgctgcta gagctattaa atacggacat cctattctga caaatgaaga gatggaagat
     1021 ttcttgaata tggtacaaac ttcaactttt gctatattta aaattcataa gccttcacca
     1081 acaacagcca cagcatcatc attacaacat ttacaacaac aacaacaaca tcatcatcat
     1141 cataaacaac aagatgaacc aataggtctg tactttctag caattattcc ttatgatgat
     1201 atattattgt acttgcaatc ttggttacca aatgaaatta atgacagtaa tgacagtaat
     1261 aacaataaat ctatccaatc taactctgca aacgaagatt ttttaagctt atgcaatcac
     1321 ttggctaata tttcaaactt tactatacca atgaggtcac catcatcctc tagcgtgtaa
     1381 gagcaataat tcctaacatc catgtcattg atattagacc attcaaactc gactgtcata
     1441 cattagttca tgcacgtcac atccccccat ataactttaa aagcacgagt attacttaat
     1501 acctacatcc atggaggatc aataatagtc ttatagtaac atcgagtcat tcatttgagg
     1561 aattcgttgt ctgcttcata ttatcaaatt gcttctaaag catctggtat ttcattgtca
     1621 agttccatct tcaaccatat cattcaaata ggaaaatcat gtacctagca atacatgact
     1681 actacagcaa atttgccatg tggatgtatc ctaagttgga gcgatcatca agttaaagct
     1741 gcattatgtt ttggacatac tttggcatac gtcacttggg agggttccaa gcatgatttc
     1801 gtcaagaagc ttgctactcc agatatttca aaatagtcaa ctttaaattg ccaccttaat
     1861 tcatgtcttt caggatctac aaaattacat gcttgaggtt tgtttcgtag aagaaatgtc
     1921 ttataagcag aggcagcctt agcaaataga cacagtaatc accaaaataa aacaaatgct
     1981 aaaaaacaga gtgcatttta gtatttttgt taaaatgcct agtaagagta cagcaattgg
     2041 atttccattg tttgatcgat tgtgtgagca agaatgtatg atatattttg cacttaagta
     2101 attcgattca tgatattgat atcaaaaata tataggcatc acgatagcaa taaattccca
     2161 aatgtctagt gtctttaatt cttacttgaa gtattactac taataccaac cactctacca
     2221 atacaaaata gaaaattccg actagctctc aaagacatgt ggctttcctt ttaaggcagc
     2281 ttctagtagg ttccaaagca gccctttggt ttgcccttac cgccatatga tcgtggagtt
     2341 ctccaattct ctcgaactga agctatacct attactacta taacatggcg gcaactcatc
     2401 atttctatgg acacaacagg cctttaccta ttgtgcagat tctgaatgat ggatcgttct
     2461 tctcttttgg ttagtcggat gtactgtatt gtagtagaga cctaatttat aacttcaagt
     2521 ttaaactaat tgataaaaag atagaaaatc tgtataacat agatgatctt taattgctaa
     2581 gatatgtaag gaaattgaat tttaaaattc aataaagtag gtttaaaata aaatagaagc
     2641 tataggatta gtaagccttt gattttatct attttaatcc cagcatacta ttaactccac
     2701 tagcatttcc tcttactgaa ggcggagcat gtgccgcgtt agtagatatg ccagttggag
     2761 acaccggtgc ggtagtattt tctttggtaa
//
LOCUS       DASQSJ010000270         2058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_231306, whole genome shotgun sequence.
ACCESSION   DASQSJ010000270 DASQSJ010000000
VERSION     DASQSJ010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231306"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..867)
                     /locus_tag="VE223_05295"
     CDS             complement(<1..867)
                     /locus_tag="VE223_05295"
                     /inference="COORDINATES: protein motif:HMM:NF014072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LarC family nickel insertion protein"
                     /protein_id="HZC21038.1"
                     /translation="MTRIAIIDSQITGISGDMLLSSLIDAGANKNKVINAIIACQDFV
                     KGSKIMDANFYKTISHGFSATRFELKYKDSTSHRRGTEMYRSLALCCDSLDLEQRAKT
                     FVLESLKTIITSEAFIHGVEISKVHLNEISSIDTFADLVGCAIALQDLGLLSSRIFST
                     KVAVGGGTLKFSHGTVPNPSSIILEIFKGKPFTLVGGQREGELTTPTGAAMLVNLTSE
                     CINYYPCFSPERMGYGMGHKKLRQIPNLLRLVIGNSSLSLKTNTDNVYVIETNVDDIS
                     GEIIGNLMELLTE"
     gene            1033..1947
                     /locus_tag="VE223_05300"
     CDS             1033..1947
                     /locus_tag="VE223_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HZC21039.1"
                     /translation="MTIAIIGAGKVGAYAALNCGLRELDDVLLLDIVEGLPQGEAMDI
                     NHQLAERGSDCIIRGSTNYEDMKGSDIVIVVAGMGRKPGMTRMDLLKTNADIVKNVAL
                     KIATYAKESKIIIVTNPLDPMTYLTLKITGFGKNNVMGMGGMLDLSRFKNFIQDATKV
                     SRQSIQALVIGEHGENMLPLIRFSSIGGIPLTQVISKEQAQDIFDHTKKVAAEVIALK
                     GATIFAPGNAIATMVEAIIKNKRSVIPVSTLLEGEYGASNLCIGVPTIIGSNGVEKII
                     ELELDTIEQNIFNQGITSLRDAINALSI"
BASE COUNT          656 a          383 c          402 g          617 t
ORIGIN      
        1 ctctgtcaat agctccatta gatttccaat gatttcgcca gaaatgtcgt ctacgttagt
       61 ttcaataaca tagacattat ccgtatttgt ttttaaactt aatgacgagt tgccaatcac
      121 caacctcaac aggtttggta tctgtcttaa ttttttgtgg cccataccgt aacccattct
      181 ttcaggagaa aaacaaggat aatagttgat acattctgat gttaaattga ccagcatcgc
      241 cgcacctgtt ggagtagtca gttccccttc cctctgtcca cctactagtg taaacggttt
      301 gcctttgaaa atttcaagta taatactact tgggtttggt acagttccat gtgaaaattt
      361 caaagttcca ccaccaactg caacctttgt cgaaaatatg cgagagctaa gaagtccaag
      421 atcttgcaag gcaatagcgc aaccgaccag atcggcaaag gtatctatgc tcgaaatttc
      481 gtttaaatga accttgctga tttcaacgcc atggataaat gcctcagatg taataattgt
      541 cttgagtgat tctaatacaa atgtctttgc acgttgttct aggtccaagg aatcacagca
      601 tagggcaagt gatctataca tctctgttcc tctgcgatgg ctagtactat ccttgtattt
      661 caattcaaac cgcgtggcac tgaaaccatg tgaaatagtt ttgtaaaaat ttgcatccat
      721 gattttactt ccttttacaa aatcttggca agcaataatt gcattgataa ctttattttt
      781 attcgctcct gcatctatta gactcgagag tagcatatcg cctgagatac cagtaatctg
      841 tgagtcaatt atcgcaatcc ttgtcatata tttatgaaaa aggctctaca ggtctcatta
      901 taacatttgc tttaaaatat atctaagatg catttcagta ttagggatac taacacgatt
      961 tataaattat ccattttacg aaatccgagt ctttgtaaac ttataagtaa tcgaacactt
     1021 tgacaagctt aaatgactat cgctatcata ggagcaggta aggttggtgc atatgcagcg
     1081 ttgaactgcg gcctgagaga actagatgat gtattattgc ttgatattgt cgagggactt
     1141 ccacaaggag aagccatgga catcaatcac caattagctg aaagaggatc tgattgtata
     1201 attcgaggtt ccactaatta tgaggatatg aaaggatctg acattgttat agtcgttgcc
     1261 ggaatgggaa gaaaacccgg aatgacaaga atggatcttc ttaagacaaa tgcggacata
     1321 gtaaaaaatg tcgctttaaa aatagcaact tatgctaaag aatcaaagat aattattgta
     1381 acaaatccac ttgatccaat gacttaccta accttgaaga taacaggttt tggcaaaaat
     1441 aacgtcatgg ggatgggagg aatgcttgac ttgtcgaggt tcaaaaactt cattcaagat
     1501 gctacaaagg tatctagaca atccatccag gcactcgtga tcggtgaaca tggtgagaac
     1561 atgttaccgc tgatcagatt ctcttctata ggcggcattc cactcacgca agttatttca
     1621 aaagagcagg cacaagatat atttgatcat actaaaaagg tggcagctga agtcatcgca
     1681 ttgaaaggcg cgactatatt cgcgccggga aacgccatcg caacaatggt agaagctatt
     1741 attaaaaata aaaggtcagt tattccagta tctactctat tagagggtga atatggagcc
     1801 agcaatctgt gcataggcgt gccgactata ataggttcca atggagtgga gaaaattatt
     1861 gaactcgaac ttgataccat tgaacagaat atttttaatc agggaataac tagtctaagg
     1921 gatgcgatta atgctttgtc aatataactg accctttctt gtattgtaat aacttttgtg
     1981 ttataacatg aatataagga ctatattgga gaaatattcg cgtggtcagc ttaccataga
     2041 tgaggtgcaa agacatat
//
LOCUS       DASQSJ010000271         2731 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_470872, whole genome shotgun sequence.
ACCESSION   DASQSJ010000271 DASQSJ010000000
VERSION     DASQSJ010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_470872"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1520)
                     /locus_tag="VE223_05305"
     CDS             complement(<1..1520)
                     /locus_tag="VE223_05305"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HZC21040.1"
                     /translation="MLTGEKDQSRYPQEPPQLPQYDVSPALKKLTLMFIGAMLINFLI
                     AGICAVGMRIIQADVPITKFGVDSIQQNVLFYSLLTSHGQVMFFGVLSMNTMWFGYYA
                     TSKWGRKPLLGMKWAKISFWMMESAVVLIFLSPVSGFGAGWYNLMPLTFLPGTPTMTW
                     GTTAAITFMAGDVLVGVAITIFCIVILLTLLRGKIPVGTQMYGARHGENAVPKEEQDL
                     EEGEDPRSIQDLDHTHQEDLPAEVRWVSLLGINGWFTRKWRDVTPAVPILLVASFVTA
                     MIQIVANPGLFVQLANGFLSIQNPISSSNWLLTKDAWWFFAHPIVYFPLLIFLGGMYF
                     FAPRYGKERVSFNKWNYRPWVFYFIFSVLVFSHHVFMDIPNPIWLQIVSQTASLGIVW
                     PSSLTIFTALLFIWRSKISWNVTTRFFYAGLAGWAFGGFQGTQFGMWGTDVYLHNTMA
                     MPGHIHLMLLLGPLLMAFGVLYAIIPDLTKKHMSKNLGEIHFWLTIFGGFGLALLFA"
     gene            1737..2441
                     /locus_tag="VE223_05310"
     CDS             1737..2441
                     /locus_tag="VE223_05310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21041.1"
                     /translation="MADTNKREAGRRQSEHNHQQQYTQEYRKQYSTKKGAGYGGFAGF
                     IAAISFTGIMLYMPFIFHFPEGTFIYTLGTTATGIKSDPVISGLAGFAIILIQGIVVG
                     IIFGIVTSKVKALHPSHKKKGVGLGLATGIIAFLVLYLPVMLSVYPQLLSRAFTSYPT
                     AELTTRGIQSYNNMIVSSYPKYLPGILGLGALAYSVYNFDLMKMKEKERQEKEEEEEA
                     KKAQDEKTRNDTRQQK"
     gene            2528..>2731
                     /locus_tag="VE223_05315"
     CDS             2528..>2731
                     /locus_tag="VE223_05315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21042.1"
                     /translation="MIVFGTLIATSLQPNLLAVTEKDLASHMVLEHTLFFFLGAISVQ
                     VAETVLRLIVSFENTKKRKNRSHT"
BASE COUNT          897 a          518 c          516 g          800 t
ORIGIN      
        1 gcaaagagca atgctagacc aaatcctcca aagattgtca gccaaaagtg aatctcacca
       61 agattcttac tcatgtgttt tttcgttagg tcaggtatta tagcatagag tactccaaat
      121 gccataagaa gaggacctaa taagagcata agatggatgt gtcctggcat tgccattgta
      181 ttgtgtagat aaacatcagt tccccacatt ccaaattgag ttccttgaaa tccgccaaat
      241 gcccatcctg ctaatccagc gtaaaagaac cgtgttgtaa cattccatga gatttttgac
      301 cgccatataa atagaagagc tgtaaatata gttagtgaag atggccagac tatcccaaga
      361 gatgcagtct gcgatacaat ttgaagccaa attggatttg gtatgtccat aaatacatgg
      421 tgagaaaata caagcacaga aaaaataaaa tagaacaccc atggacggta attccattta
      481 ttaaatgata ctctttcctt accataccta ggagcaaaga aatacattcc acctagaaat
      541 atcagcaacg ggaagtatac gatagggtgg gcaaagaacc accatgcatc cttggtcaaa
      601 agccagttag aagaagagat tggattttga atagataaaa aaccattagc aagttgtaca
      661 aatagaccgg ggtttgcaac gatctgtatc attgctgtta caaatgaagc gactaacaat
      721 attggtacag cgggtgttac gtctctccat ttccttgtaa accatccatt tatccccaat
      781 aatgataccc accttacttc tgcgggaaga tcctcttggt gtgtatggtc caaatcctgt
      841 atagaacgag gatcttctcc ttcctctaaa tcctgttctt cttttggtac tgcgttttct
      901 ccatgtcgcg ctccatacat ctgagttcca acaggtatct ttcctctcag cagagttaac
      961 aaaattacaa tacagaatat ggtaattgct acacctacga gaacatctcc tgccataaat
     1021 gttatagcag cagttgtacc ccaagtcatt gtcggtgtac cgggcaaaaa ggttagaggc
     1081 atcaggttat accatccagc accaaaacca gagacaggag acaagaatat tagtactact
     1141 gctgattcca tcatccaaaa tgaaatcttg gcccatttca tacccaacaa gggtttccta
     1201 ccccatttgc ttgttgcata gtagccaaac cacatcgtat tcatagacag tactccaaag
     1261 aacattactt gaccatggga agtaaggaga gaatagaata gcacattttg ttgaattgaa
     1321 tcaacaccaa attttgttat aggtacatct gcttgtataa tgcgcattcc aactgcacag
     1381 attcctgcta taagaaagtt gatcagcatc gctccaataa acattagagt taattttttg
     1441 agtgcaggtg aaacgtcgta ctgcggtaat tgcggcggct cttgaggata tcgactttga
     1501 tctttttctc ctgttaacaa tctttactta aactcttgaa tgttgttgtt aacgtgtata
     1561 taaaacattt taatctattt agaatcgttc gttcgtttat agggtattag tagtagctgc
     1621 aagagattca gactaaaaaa gaatatttat gggatgcatc ttatctctaa cattctttat
     1681 aatttttgta attgaatcat taaatatgat tttttataat aatagtacca ctttatatgg
     1741 ctgataccaa taagagggaa gcaggaagaa gacaatctga acataatcat caacagcagt
     1801 atacgcagga atacagaaaa caatacagta caaagaaagg agctggctat ggtggatttg
     1861 caggctttat tgctgctatt agttttactg gaataatgtt atatatgccg tttatttttc
     1921 actttccaga aggtactttt atttatacat taggaacaac tgctacaggc ataaaaagcg
     1981 atcctgttat aagtggtctt gcaggctttg ccattatcct tattcaagga attgttgtag
     2041 gtatcatatt tggaattgtt acatcaaagg tcaaagcgct tcatccttct cacaaaaaga
     2101 aaggcgttgg acttggcctt gccactggaa taattgcatt cttggtcttg tatttgccag
     2161 taatgctgtc tgtgtatccg caattactta gcagagcatt tacaagttat cctacagcag
     2221 agctgacaac acgagggata caatcttata ataatatgat tgtatcttca tatccgaaat
     2281 acctaccggg catacttggt ctaggagctt tggcatactc agtctacaat tttgatctta
     2341 tgaaaatgaa agagaaagaa aggcaagaaa aggaagaaga agaagaagca aagaaggctc
     2401 aagacgaaaa aactagaaat gacacccgtc aacaaaaata aagggaggca aagggtggaa
     2461 taattttcaa ttgtcatcca atggagtttt agtatggttt ggcaaaaata ttcgtagtta
     2521 tatcttaatg attgtatttg gaactctcat tgctacctct ctccagccca atttacttgc
     2581 agtaactgaa aaagaccttg ctagtcatat ggtgttagaa cacacattgt tttttttcct
     2641 tggtgccatc tcagttcaag ttgctgaaac agtcttgagg ctgatcgtat cgtttgaaaa
     2701 tacaaagaaa agaaagaaca gatcacacac a
//
LOCUS       DASQSJ010000272         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_373476, whole genome shotgun sequence.
ACCESSION   DASQSJ010000272 DASQSJ010000000
VERSION     DASQSJ010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373476"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(331..558)
                     /locus_tag="VE223_05320"
     CDS             complement(331..558)
                     /locus_tag="VE223_05320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21043.1"
                     /translation="MKQKGISFEMRVVSTKAGYNKVPYDPFIIAENVKYNVPSFATIT
                     KGRFSEIKTTTNDIPFNDYWNDTDSLDIRVV"
     gene            complement(794..1417)
                     /locus_tag="VE223_05325"
     CDS             complement(794..1417)
                     /locus_tag="VE223_05325"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HZC21044.1"
                     /translation="MMLRALESPERAHTLLIGPPASAKSLFMLEIERLMPQNKVYFTE
                     GSATTKAGIQKFIAENPHKEIIIIDEIDKMPTKDQEGLLTMMERGEFTSTKVRNTQTV
                     KANIVIFATSNSVQRLSKPLLSRFTIFEIPEYTYEEFEAISIRIIKKLPHNVVVQIAS
                     SIWKSGSKDIRDVLKIAKLCNAADTEEDIKRLISIHQKYHKTGREYN"
     gene            complement(1623..2039)
                     /locus_tag="VE223_05330"
     CDS             complement(1623..2039)
                     /locus_tag="VE223_05330"
                     /inference="COORDINATES: protein motif:HMM:NF016798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUN14 domain-containing protein"
                     /protein_id="HZC21045.1"
                     /translation="MVVVDAAAQNVTSLTPLLTTVGFGGLVGYLIGMAIRYIVKIIAI
                     IVSLFLAALMYLQSQGIVNVNWTKLQAMSQPVLSSLTNSLNSTKSGVGVVTGHNSSTP
                     AIRNLIHNSLPFIPIDMGLPLVGSAGLGFILGLTRR"
     gene            complement(2040..2231)
                     /locus_tag="VE223_05335"
     CDS             complement(2040..2231)
                     /locus_tag="VE223_05335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21046.1"
                     /translation="MVSTTTKATGITQDRTEKLGITLPKSILQKIDDKRGDIPRSTYI
                     QRAIESFLNIKTKKGAERK"
     gene            2380..2670
                     /locus_tag="VE223_05340"
     CDS             2380..2670
                     /locus_tag="VE223_05340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21047.1"
                     /translation="MVMLCNAKIYTNIDNNKIIIVTNKNKQEYLPCMLCGRRRIKPTQ
                     KHTSMGMTKIEHISDGICRQCAWETIKHKCKICGEVIGKGYPRLIAHITSHF"
     gene            2849..3097
                     /locus_tag="VE223_05345"
     CDS             2849..3097
                     /locus_tag="VE223_05345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21048.1"
                     /translation="MEDDRNNQEWKPITNGLPEPSGTIISVIAANPKAEGEFYVINNR
                     GIFCSTDSGNSSKMLDGVAWPKHYLSQHPRALAIRQNG"
BASE COUNT          932 a          567 c          533 g         1080 t
ORIGIN      
        1 caattcgtac acaatcccta atatctcgag atttgttcca aacagcatta gctataacat
       61 actaccactt ggcgggatac caaaatttgt cattgctaaa gcgtcagcaa tgatatgtga
      121 atccaagaat ccgagtcatt acatttgcaa gtgtcgtaac agcattttgt gatactgccc
      181 gaaacttgcc cattttatat caattatctg ctggtactaa agcttcatgg tatattatct
      241 atctgcaatg gttctaaaaa ggcacttatt ttttcctagt gtctcacagc atcatacatt
      301 ctttttgctc tatcaaggat atctttaatc ttaaaccact ctgatgtcta aagaatcagt
      361 gtcgttccaa tagtcattaa atggaatatc gttggttgtc gtttttattt cgctaaaacg
      421 tccttttgtt attgttgcaa atgatggaac attgtacttt acgttttctg ctataatgaa
      481 cggatcgtac ggtactttat tgtatcctgc cttcgttgaa actacccgca tttcgaatga
      541 aattcctttc tgtttcattt ctttttgaaa ctcgcaaatc tgcgactctc agcatcagaa
      601 attctaatct ctccctgaac ttttcattaa tcgtttgaat gacttcaggc aatgttgtcg
      661 gaacatcggg cattaagaag cagaagagag ttaaatttat gagtaaagat tattttggtc
      721 cgtccaaaag ttcgactcac tgaatcgtca cataaatagt acattccttt gtatttctgg
      781 ataatgttac aagtcaattg tattccctac ctgtcttgtg atacttctga tgtatagata
      841 tgagcctctt tatgtcttct tctgtatctg ctgcattaca caactttgca attttcaaaa
      901 catctcttat atctttgctt cctgatttcc atattgagga agcaatttgt actacaacat
      961 tgtggggcaa ttttttgatt attctgattg atattgcttc aaactcttca tatgtatatt
     1021 ctggaatttc gaaaatagtg aacctgctaa gtagaggttt acttaacctt tgcacactat
     1081 ttgatgttgc aaatattacg atgttggctt ttactgtttg tgtattcctg actttggtac
     1141 ttgtaaactc tcctctttcc atcatagtta gtaaaccttc ttgatctttg gttggcattt
     1201 tgtcaatttc atctatgatg ataatttctt tgtgtggatt ttctgctatg aatttttgta
     1261 ttcctgcttt tgtagtagca cttccttctg taaaatacac tttgttttgt ggcattagtc
     1321 tctctatctc taacataaat aatgattttg cagaagctgg tggccctatc agcaaagtgt
     1381 gagctcgctc tggagattcc aatgctctta acatcatctc tttgatgtca tcaagtcctt
     1441 ctatacttga aaaaactttg agtgctcgct ctcttaaggt taatttcgat tcgttaggaa
     1501 tttcatgaac gtcatcttgt gatttatgtt ttttaagaaa attaaatatt ttgaatcatc
     1561 acctattaca tgacgtccaa ccaatattat gtttagttat tgggcacaat tgcatatcat
     1621 tatcatctcc tagtcaggcc aagaatgaac ccaaggcctg cactgccaac taaaggcaag
     1681 cccatgtcta tcggtatgaa aggtaagcta ttatgaataa gatttcggat agcaggagta
     1741 ctactattat gtcctgttac tactcctaca cctgattttg tggaattcag actgtttgta
     1801 agagatgaca gaacaggctg tgacattgct tgtaattttg tccagttaac attaactata
     1861 ccttgtgatt gcaaatacat tagagcagca agaaataaac tgactattat tgctattatt
     1921 tttacaatat atcttattgc catacctatt aaatatccaa ctaatcctcc aaatcctaca
     1981 gtagttaaaa gtggtgtaag gctggttaca ttttgagcgg ctgcgtcaac aacaaccatc
     2041 tattttcttt cggctccttt tttggttttg atattaagaa aactttcaat agctctttga
     2101 atgtatgtgc ttctaggaat atctccacgc ttatcatcaa ttttttgcaa tattgatttg
     2161 ggcaaagtaa ttccaagttt ttctgtccta tcttgagtaa taccagttgc ttttgtagtt
     2221 gtactaacca tacttgtaaa ttatatataa caactcttag ctataagagt tccttttctc
     2281 aataaaatat ctccaattta ttattataca acaattatag atcgtagcca gttcaaatga
     2341 ttcgctacat gctgtcataa tgaacgattc tagacgataa tggtaatgct ttgcaatgct
     2401 aaaatatata ctaatataga taataacaag atcataattg taacaaataa aaataaacag
     2461 gaatatcttc cctgtatgct ctgtggaaga aggaggatta aacctactca gaagcatact
     2521 tcaatgggaa tgacaaaaat agagcatatc agtgatggaa tctgtaggca atgtgcttgg
     2581 gaaacaataa agcacaaatg caaaatttgc ggtgaggtta ttggaaaagg ttatcctaga
     2641 ttaattgctc atattacctc acacttctaa tgaacttttg tacaatgaag acagagatat
     2701 agatattatt tcgataaact ctgaaaaggc aaacacttca gataaatagt tagtagtcga
     2761 tgaagatgaa aaaggtcaac atcctcagct tggcaagcac attctatcga agatgccgaa
     2821 tcgttggtat atagaaggtg cttggaaggt ggaggatgat aggaataatc aagagtggaa
     2881 accaattacc aatggtcttc ctgaaccaag tggaacaatt atttccgtca ttgcagcaaa
     2941 tccaaaggct gaaggagagt tctatgttat caacaaccgt gggatatttt gctctactga
     3001 ttcgggcaat tcatcgaaga tgcttgatgg tgtcgcatgg cctaagcact atctttcaca
     3061 acatcctcgg gcacttgcaa taagacaaaa tggatagata aagagctgtg cg
//
LOCUS       DASQSJ010000273         2680 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_231710, whole genome shotgun sequence.
ACCESSION   DASQSJ010000273 DASQSJ010000000
VERSION     DASQSJ010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2680
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231710"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..503
                     /locus_tag="VE223_05350"
     CDS             <1..503
                     /locus_tag="VE223_05350"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HZC21049.1"
                     /translation="DQTMHYSISKIILQWAIENECELIISAAGMPVSQENTGVSSAAE
                     LKTEKANEAETHVFAAASTTRAIEKLANAGVPALPNGSVTGIAALLLNEGLWMNFDVI
                     VLLVKVLKDVPDFRAAAALSEAISKIIPGASCDIASLLQEAAQIEKNLRKIKTEQTDP
                     DVRIYR"
     gene            484..675
                     /locus_tag="VE223_05355"
     CDS             484..675
                     /locus_tag="VE223_05355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21050.1"
                     /translation="MLEYIAKGSHIIGIMPFRRRNHDKAMKLFEESLELSKEIEDRRG
                     ITIFMIRLGNVASKEAGLV"
     gene            754..1560
                     /locus_tag="VE223_05360"
     CDS             754..1560
                     /locus_tag="VE223_05360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21051.1"
                     /translation="MSTHLTFFKKSIFVLSKNPILFLLPSIGSILSITVEIIFATNLY
                     YSNGNKVFFPDSILVGLFFAAFTIIYFQLGISKKSIIRLRATPKNNYYSTDVLELFII
                     YSIYSLLLVFIGGYEGQVRETYSINSDPFSLYVSKVTTYHNIIAIIPAGIVTVLSYTL
                     ASILFSAWMVQYMLLKDQDMQYGLIQSFRKLAYNSTFKDTRKKMLLLFLVTLVISILD
                     FVLSNIAITPIADALHSYLYQFVILSVVDSLYAPFFLICLFLIIPSGSIS"
     gene            complement(1759..1914)
                     /locus_tag="VE223_05365"
     CDS             complement(1759..1914)
                     /locus_tag="VE223_05365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21052.1"
                     /translation="MKPLETLFWLGTAGVLYVAANTIVKNVAKDVVKDVFKQTERRSN
                     HNRCLWW"
BASE COUNT          856 a          486 c          476 g          862 t
ORIGIN      
        1 tcgaccagac aatgcattat tctatatcaa aaataatttt gcagtgggcg atagaaaatg
       61 agtgtgaact cataattagc gctgccggta tgcctgtctc ccaagagaat acaggagtgt
      121 cgtcagcagc agaattaaaa acagaaaaag caaatgaagc tgagacgcat gtctttgcag
      181 cagcaagtac tacacgtgct atagaaaagt tggctaatgc aggtgttcca gcattgccaa
      241 atggctctgt tactggtata gctgcattgt tattaaatga gggtctatgg atgaattttg
      301 atgtaattgt attgctagtt aaagttttaa aagacgtccc agattttcga gcagccgccg
      361 ccctctcaga agcaataagt aagataatac cgggtgcatc atgtgatatc gcttccttac
      421 ttcaagaagc agcacaaata gaaaaaaacc taagaaagat taaaaccgaa cagacagatc
      481 ctgatgttag aatatatcgc taaaggctcg catatcatag gaataatgcc cttccgcaga
      541 agaaaccacg ataaggcaat gaagctattt gaagaaagct tggaattaag caaggagatc
      601 gaagatcgaa gaggcattac tatatttatg ataagattag gaaacgttgc ttcaaaagag
      661 gcaggcttag tatagattct gtttgttgtt atagacattg ttgccagatc tgtagataat
      721 tattaaattc agaaataaca aaacaattaa cagatgagta ctcaccttac tttttttaaa
      781 aaaagtatat ttgtgctttc taaaaatcca attcttttct tgttaccttc aattgggtca
      841 atattatcca tcacagtcga gattattttt gctaccaatc tttactacag taacggcaat
      901 aaagtttttt tcccggatag catactcgtc ggcttatttt tcgctgcatt tacgattatt
      961 tattttcaat taggaatatc aaagaaatct attatcagat tacgtgcaac gcccaagaat
     1021 aactattata gcacagatgt tttagagctt tttataattt attcgattta ttctttacta
     1081 ctcgttttta tcggaggata tgagggccaa gtacgtgaaa cttatagtat aaactcggat
     1141 cctttttcgc tgtacgtgtc caaggttacg acttatcata atattattgc tattattcct
     1201 gccggtattg tcacggtctt gtcttacacg ctggcttcta tcttgtttag cgcctggatg
     1261 gtccaataca tgttgttaaa agatcaggat atgcaatatg ggttaataca atccttcagg
     1321 aaattagctt acaacagtac attcaaagac actaggaaaa aaatgctgtt attatttctt
     1381 gttacactag taatctcaat tcttgatttc gttctttcaa atatagcaat tactcctatc
     1441 gcagatgctt tacattcata cctataccaa tttgtgatct taagcgtagt agattcactt
     1501 tatgcacctt tctttctaat atgtctattt ttaattatac catcaggctc gatctcctaa
     1561 tctcctaacc aagttcctta tcttaagatg caactgttcc tatagtctta ttcccttgca
     1621 tctactccaa aatcttcatg taatcattgt tctcagctcc tagaggttaa tgacagaaca
     1681 tcactcttaa aagaaagata atgatcgata ctaaatacta agtattgtgg gagaatagat
     1741 cggttgattg attggttact accaccacaa gcaacgatta tggttgctac gccgttcagt
     1801 ctgcttaaat acatccttta ccacgtcttt tgctacgttt tttactatgg tattggcagc
     1861 cacatacaac acaccagctg tacctaacca aaatagtgtt tctagtggtt tcattttata
     1921 tcaaatgtaa ttggtcctca ttatataaaa gcctacacaa tatcatatat gagaatactt
     1981 agctaatcat atattcagag aggtttaaaa tgatttgtat catatacatc ttatcatacc
     2041 aaagaatacg ttagcattac ctttcaaaat aattgcggta agaatctcaa gtgtactcgt
     2101 ggtaattttt caagaaggta tccttatgct tatcttcaaa atggctcact ataaagtcta
     2161 gtcctacatc atgatggaat cattccagga attcgacttt ccattttggc tgatgttttt
     2221 gcatgtcgga tgtcaccacc attttccatc atgttgtaaa cactttgtct ctattgtaaa
     2281 gttgtgaagc cacgaagggt atgaaggatc tgcgaacaga ttggccacat cgcgaagatg
     2341 atatgggaag caatcatgat atatgacaag aaacgggact ctcctaccag caacttgctc
     2401 caagacattt tggacaagag aacctcaaat ggttcttcgt ttacgaagtg gtgcagggat
     2461 aaaagactac cgaataattg aattgttgga tagcagtttt gtgagaatat ttgtcgatca
     2521 gaattagatg attgtacgtc agggactggt actagcaact agtgtagtgg aattagtggc
     2581 atcctaatct ataaaagcct ctaaaaaaag tttttttagt aacttaaata tatctacata
     2641 ataaagactt cgcttatggc aaaagtacaa cattacaggg
//
LOCUS       DASQSJ010000274         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_471285, whole genome shotgun sequence.
ACCESSION   DASQSJ010000274 DASQSJ010000000
VERSION     DASQSJ010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471285"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            293..1549
                     /locus_tag="VE223_05370"
     CDS             293..1549
                     /locus_tag="VE223_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HZC21053.1"
                     /translation="MVGIEIGHIVQDFTVIMVVASIMALVSYKLKQPMVIGYIIAGMI
                     IGPYTPPFSLVVNLDVLNLFSEIGIILLLFVVGMEFPIEKLKSIGRKALVIALSEALG
                     TFAAGIVIGQSVLHYSVYNSLFLGLAISVTSTVIVMRILEELDVIKEEASQLILGVAV
                     IEDIVIISMLAILQSVVTSTGHLSVLELGLSIGTVLAFIAGVIIIGSKTIPKFVDYVG
                     RTNQHDLLIVTVLGVAFGLSFIAYEIGISVATGAFFAGVLIAESKVHSVTRVIATPIK
                     DMFAAIFFVSVGALMNIALIPTFIIPALVLILISIAAKFFTVLVSSRLQGISMLTSLR
                     TGFGLSSSGGELALVVAKGGVDIGATSSFILPMVGAMTVITTFITPYMIKIGWNLAHA
                     LGNFNKNDNKEGWRQRLEFSFFKRKE"
     gene            complement(1906..>2611)
                     /locus_tag="VE223_05375"
     CDS             complement(1906..>2611)
                     /locus_tag="VE223_05375"
                     /inference="COORDINATES: protein motif:HMM:TIGR02276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HZC21054.1"
                     /translation="TNKQANTVSVLNTLRNNNKVIATILVGNFPGNSSSGIASNTANG
                     KIYVANIGSGIVSVIDSSTNSVVNNIKGFFSPSGIAYDSGNGHIYVTNKQANTVSVLN
                     TLRNNNNVIATIHVGTSPSAIAYDHANGHIYVANSGSSHSRGTISVIDDLTNKVISTI
                     GVGTGPNGVAYNPASGKIYVANTLSNTISVIDGFTNNVIATIPVGINPYGVLYNPANH
                     YIYAANYGSNTISVIR"
BASE COUNT          785 a          418 c          523 g          885 t
ORIGIN      
        1 gatttgccaa tacaaaggtc ctatacttaa acagctgaaa attactgtat agcttctatt
       61 ctttctcgac atattatcat cattttattc atgtttttgc aaaagtctga aaagaatatg
      121 ctaccatatt agatcttaat atcgaacggt tcaacaacga tttattcagt catgtctatg
      181 caggccgcat acatgaggat tttatcagtg gtattagtag cggcgtaaaa ggtaactcga
      241 caaatgcggc gagacttttt taccacagta gatctagtta gtttgttgtt gtatggttgg
      301 tatcgagata ggtcacatag ttcaggattt tactgtcata atggttgtag catctatcat
      361 ggccttagtt tcatacaagt taaagcaacc aatggtcatt ggttatatta ttgctggtat
      421 gattatcggt ccatacactc caccttttag cttggttgtt aaccttgatg tactcaatct
      481 attttcagaa attggaataa ttctgttgct gtttgttgta ggaatggaat ttcctattga
      541 aaaactaaaa agtattggta gaaaagcatt agtaattgct ctatctgaag cattgggtac
      601 ttttgctgct gggattgtaa taggtcaaag tgttttgcac tattctgttt ataatagcct
      661 atttctagga ttagcaatat ctgttacaag cacagtaatt gtcatgagga ttttagagga
      721 gttagacgtg ataaaggaag aggcatcaca gttgatttta ggtgttgctg tgattgaaga
      781 cattgtaata atatctatgt tggcgatttt acagtcagta gtaacatcta caggtcattt
      841 atcggtccta gaattaggat tatccattgg aactgtgtta gcatttattg caggcgtaat
      901 aataataggt tcaaaaacaa taccaaagtt tgttgattat gtgggaagaa caaatcaaca
      961 tgacttgcta atagtaaccg ttctcggtgt tgcatttggt ctttcattta tagcatatga
     1021 aatagggatc tctgttgcta caggtgcatt ctttgctgga gtactgatag cagagtcgaa
     1081 ggttcattca gttaccaggg ttatagcaac gccaataaaa gatatgtttg ctgccatatt
     1141 ctttgtatcc gttggcgctt taatgaatat tgctctcatt cctacattca taattcctgc
     1201 tttagtatta atattaatat caatagcggc aaagttcttt actgtacttg tatcgtccag
     1261 actccaagga attagtatgc tgacttcgct aagaacagga tttggtttat catcgtcagg
     1321 tggagaactt gctcttgtag ttgctaaagg tggagtagat attggcgcca caagttcttt
     1381 tatattgccg atggtcggag caatgacagt aattactact ttcataacac catatatgat
     1441 aaagatagga tggaatcttg cacatgctct tggtaatttt aataaaaacg ataacaagga
     1501 gggttggagg cagcggcttg aatttagttt ctttaaaaga aaggaataat aatataatga
     1561 taataacaaa agtaataagt tgtaacatta tgacctgata gttaaaacct tgatttgtcc
     1621 gatacagcta aggatggaag agcatatttt caaggactag gagctgtact cggccgaggc
     1681 ggtcatgtat cctttaggag aagcagagat gaggactcaa atttggtgat actaccaggt
     1741 ttgtattgac atatgttcac ataataagcc cagccaactg gaaagagcct ctatctaagt
     1801 gttgaaatta atattggaat atgtggcgta ataggaaatg tgaccacata ttcatgtata
     1861 ttagcaaaag tctctagatt cagtttcctg tattttttca aatcatcagc gtattacaga
     1921 gatagtattt gaaccatagt tggctgcata aatgtaatgg ttagcagggt tatagagaac
     1981 tccatatgga ttgataccaa ctggtatagt cgcaattacg ttgttcgtaa agccatctat
     2041 aacagatata gtatttgata acgtattggc tacatatatt ttaccactag cagggttata
     2101 agcaactcca tttggaccag tacccactcc tatagttgaa atcactttat ttgtcaaatc
     2161 atctattacg gatatggtac ctctagaatg gcttgatcca ctattggcca catatatgtg
     2221 accgtttgca tggtcatagg caattgcaga aggagatgta ccaacgtgta tcgttgcaat
     2281 cacattattg ttattcctta atgtgtttag gactgatact gtatttgctt gcttatttgt
     2341 aacatatatg tgaccattac cagagtcata cgcgatgcct gaaggactaa aaaagccttt
     2401 gatattatta actacgctat ttgttgaact atctattact gacacaatgc ctgagccgat
     2461 attggctacg tatatcttac cattggcagt attagatgca atgccgctag aactattacc
     2521 tggaaaattg ccaactaata tcgttgcaat cactttattg ttattcctta atgtgtttag
     2581 gactgatact gtatttgctt gcttatttgt a
//
LOCUS       DASQSJ010000275         2764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_351757, whole genome shotgun sequence.
ACCESSION   DASQSJ010000275 DASQSJ010000000
VERSION     DASQSJ010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2764
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351757"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            394..1095
                     /locus_tag="VE223_05380"
     CDS             394..1095
                     /locus_tag="VE223_05380"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HZC21055.1"
                     /translation="MKAVILAGGLGKRLRPLTDERPKPLIEVLSIPIIEWQIKWFRKH
                     SINEIVICVGYLKEQIIDYIGSGNKFGVKVGYAVEEEPLGTGGALKNAQSLLGGVEED
                     GFFMINGDILTDLHPTSLICDNYAALALVPLRSPYGVVDLDQKSYVLGFIEKPQIRDK
                     WINAGVYYLRKDVFNYLPENGNIEVTALPTMARERKLKAVKYENSFWRSIDSHKDIEE
                     ASKELKSKELINEFG"
     gene            1082..2062
                     /locus_tag="VE223_05385"
     CDS             1082..2062
                     /locus_tag="VE223_05385"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZC21056.1"
                     /translation="MNLDRIGYNPGSLLSMQEVLTFAKLANDKPNVNSLWIPESWGRE
                     AFASLGALSQITTKPKLGTSIISIYSRTPATIAMGATTLDTLSNNRMIIGLGASTPTL
                     VENWHGQNFEKPLLRMREYVECLKQMITGEKVNYTGNYVRVQDFKLLYRPQRQRIPIF
                     IAAVNRYMISLACDIADGVLLYLRPFDELKKTTSYIKSITKNKTFEIACVIISAVSNK
                     EPQKARARAAKTLAFYVAVGEYSSRFISDNGFGDEVKQIVSEYRRNGLDSASRFVSEQ
                     MLDSLTICGNSEECLKSLNKFISAGISLPIIQVNPTGNTQSSIKEMLAAF"
     gene            2064..>2764
                     /locus_tag="VE223_05390"
     CDS             2064..>2764
                     /locus_tag="VE223_05390"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HZC21057.1"
                     /translation="MQRVAVAAYATSEFRKESKLSLFELGSEPCIEILKKNKIQKHEI
                     DAVLFSTCSTEQYSSNILSEMLGITPRISHRIESLCNSGTNAIVSAYSYISSGLCDSV
                     LVAGAEKATTSANRLIWDISRGSFTFTVFWAALFARAHMRKYGTTEEEMAFVSVVNRK
                     SAEKNPNAIFRSKITISDVMQSRKIVEPIKLLDCSYICDGSSAILLLSEGKAKKVTDN
                     PVWVKGIGQHTTGAS"
BASE COUNT          944 a          459 c          588 g          773 t
ORIGIN      
        1 agataaggtc attgagacaa ttgaggaatt aagtgatgtc aggatcctag gtgttatacc
       61 atttcttaag actctaaagc tgagcaaaat gagacttgca attgaacgga atttagacat
      121 taatgaaata ttgttgatgt aggaactgaa agttgtaatt atcaattttt tcatattaag
      181 ccttcatgtg atattggttg gacttggagt caggaagagt aaaatcgata taaagagata
      241 ctaaaacaaa aatgaatgat ctttgaataa aaaggatgat ggacaacaaa gagattttcg
      301 atgttgaaag caaatgtggc gcgacttaaa acattaaatg acgtggagct aaattgagaa
      361 aatgcttaaa taaaatatgc tattcagaaa atcatgaagg ccgttatctt agctggtggg
      421 ttaggtaaaa ggctaagacc actgactgat gaaagaccaa aaccgttgat agaagttctg
      481 agtattccaa tcatagaatg gcagataaaa tggttcagaa aacattcgat taacgaaatt
      541 gtcatatgtg tagggtatct caaagaacaa atcatcgatt acattggaag tggtaataaa
      601 tttggcgtta aagttggata tgcagtggaa gaagaacctc tcggcactgg cggcgcttta
      661 aagaatgcac aaagccttct tggcggagtt gaggaagacg gattctttat gataaatggc
      721 gatatcttga cagatttaca cccaacttcc ttgatttgtg acaactacgc ggctctggcg
      781 ctagttccac taagaagccc gtatggtgta gtcgatctgg atcaaaaatc gtatgttcta
      841 ggatttatag agaaaccgca aataagagat aaatggataa acgctggggt ttattacctt
      901 agaaaggatg tattcaatta tttaccagag aacggcaata tcgaagttac cgccctgcca
      961 acaatggcga gagaaagaaa attaaaagct gtaaaatacg agaattcttt ctggagatca
     1021 attgattccc acaaggatat agaagaggca tcaaaagagc taaaatcaaa ggaacttata
     1081 aatgaatttg gataggatag ggtacaaccc cggcagcttg ctttcaatgc aagaagtgct
     1141 tacatttgca aagttagcaa atgacaagcc aaacgttaat tcattatgga taccagagtc
     1201 gtggggacgt gaggcttttg cttccttagg tgcgctatct caaataacga ctaaacctaa
     1261 gctggggaca tcaattataa gtatatactc aaggacgcct gcgacaatag ctatgggcgc
     1321 cactacattg gatacgcttt ccaataatag aatgattata gggctaggag ccagtacgcc
     1381 aacattagtc gaaaattggc atggtcaaaa ttttgaaaaa ccattactta gaatgcgaga
     1441 gtatgtcgaa tgcttaaaac agatgataac aggagagaaa gtaaactaca ctggtaatta
     1501 tgtcagagtt caagatttca aactattgta cagaccacag agacaacgga taccgatttt
     1561 tattgcggcc gtcaataggt acatgatatc gttagcttgc gatatcgctg atggagttct
     1621 actttacctt cgtccatttg acgaattaaa gaaaactacc tcttatatta aatcaattac
     1681 taaaaataag acttttgaaa ttgcctgtgt aatcattagt gcagtttcga ataaagagcc
     1741 tcaaaaagct cgtgcccgtg cggcgaagac tcttgcattt tatgttgctg taggagaata
     1801 ttctagcagg ttcatatcag ataatggttt tggagatgaa gtaaaacaga ttgtttcaga
     1861 atatcgacgc aatggattag acagcgcgtc aaggttcgta tccgaacaga tgttagattc
     1921 tctaactatt tgtggcaata gtgaggaatg tctcaaatcg ttgaacaaat ttatatctgc
     1981 tggaatttcc cttcccatca tccaagttaa tcccacagga aacacccaaa gctcaattaa
     2041 ggagatgctt gcagcctttt agaatgcaga gggtagcagt agccgcatat gcaactagtg
     2101 aattcagaaa ggaatcaaaa ttatctttat ttgaattggg ttcagaacct tgtattgaaa
     2161 tactaaagaa aaataaaatc caaaaacacg agatagatgc agtcttgttt tctacttgtt
     2221 caacggaaca atatagttca aatattctct ctgaaatgct tggtattact cccagaatat
     2281 cacataggat agaaagtctt tgtaattccg gtaccaatgc catagtttcg gcttattcat
     2341 atatttcttc aggtctctgt gattccgtgt tagtagcagg agccgaaaag gctactactt
     2401 ctgctaacag gcttatctgg gatatttcca gaggctcctt tacattcacg gtcttttggg
     2461 ctgctctttt tgctcgagct catatgcgaa agtatggaac caccgaagaa gagatggcgt
     2521 ttgtttcagt agtaaaccgt aaaagtgcag agaaaaatcc aaacgctata ttcaggagca
     2581 aaataacaat tagcgacgtt atgcaatcaa ggaaaattgt ggaacctatt aaattgttag
     2641 actgttccta tatatgtgat ggctcttccg caatcttgtt attgtctgaa ggtaaagcaa
     2701 aaaaagtaac tgataatcca gtatgggtaa aaggaatagg acaacatacg actggagcta
     2761 gctt
//
LOCUS       DASQSJ010000276         5082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_113091, whole genome shotgun sequence.
ACCESSION   DASQSJ010000276 DASQSJ010000000
VERSION     DASQSJ010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5082
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113091"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(329..649)
                     /locus_tag="VE223_05395"
     CDS             complement(329..649)
                     /locus_tag="VE223_05395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21058.1"
                     /translation="MNVNMRSVYFGIGLILTATASMVLLWIPSIELYAQQQPITEAIR
                     QNSEVSVVTVAHENATSVSLISTKPAQLAQAVSMIELQFHMHVVSKSILPFPEMEYRV
                     VMSK"
     gene            864..1277
                     /locus_tag="VE223_05400"
     CDS             864..1277
                     /locus_tag="VE223_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21059.1"
                     /translation="MKNNPRSNNADTLLKLYEIYDKHRDAILWFLEELDANNYEEYLK
                     KYSGTSSGRSKFIAVCGFFELSGVLVSYGLIDQNLYFDMFNPNPFWEKAKSIVEGMRE
                     KRPHIYEKFELLNNKRLSWTKKRGRTKKEALKSIT"
     gene            complement(1627..2043)
                     /locus_tag="VE223_05405"
     CDS             complement(1627..2043)
                     /locus_tag="VE223_05405"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HZC21060.1"
                     /translation="MSQEPNNEITHSSIRKLFEGKNLAFVSTLMKDGHPHNTPTWIDI
                     EDGNIFVNTAIGRIKQKNVSRDPRLSIAIVDQNNPYDMVTVRGRVIEQITGNAADEHI
                     DKLAKKYLGKDKYPNRAPGEKRVILKIKPERVFHMK"
     gene            2339..4120
                     /locus_tag="VE223_05410"
     CDS             2339..4120
                     /locus_tag="VE223_05410"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HZC21061.1"
                     /translation="MQKTLSEGVFSIHSVKDSTRFSDFADTCEKIRATPSKNMKINIL
                     SRYLLSLDDESLAIAVLFFSNRIFPRGSKFVMNVGFSTILLALSEIASLDPNQIQQIY
                     LQHGDMGALSEYAVSKKNMVSLFQQQALTLSSIYCRLKEVADTIGSGSGKDRKNILKG
                     ILINSSPLEAKYLIKIINAETRIGLTEGLVEIAISKAFGRDLTSVRDAMLVSGDISHV
                     ALLARRGSLYTALVRPFTPISYMLADVMLTAEEIIKYYPKPLICEYKYDGMRAQMHKV
                     GQEIRLFSRKLADVTNAFPELVSAATAATTVGSSSSSVGDIDFILDGEVMAFQDGKPL
                     HFQELQRRLHKKNVTEQIMTEIPLVYVVYDVMYFNGENTITKSIKERKEILSTISFKE
                     PIINSSYKVVNSEQEIIAMFEKSRDIGHEGLVLKDPDSHYHPGKRGRYWVKLKKELDT
                     IDAVVVSAEYGHGKRAGLLSDYTFAVREDNNYNSSKLRTIGKAYSGLTDVEITEMTKK
                     LTSIMIRDEGYGIIVKPEIVLEVAFDSIQKSDRHDSGYALRFPRIKNIRGDKNVADID
                     TLQRVEQIYEKQAYIMSKIGRHGSKMD"
     gene            complement(4389..>5082)
                     /locus_tag="VE223_05415"
     CDS             complement(4389..>5082)
                     /locus_tag="VE223_05415"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015786.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZC21062.1"
                     /translation="SSSSSSSNHILDYNPQYYWTEQGKTYKEQFRYNKKFELQEQMLI
                     DYLKNNVSLSSSASVLEVGCGFGRITKLLLINFPNIKEYLAVDLSAHQIENAKEYVRP
                     AEMLIKKEGKANPDIKFIVSDIQSLQINKKYDLVIASEVLLHVLPSEINEVVSKLVHL
                     SNRHVVNIDWYEEQTPKNVAPHNFIHNYEGIYKSMPSITHVNRIPIEKKGSLLSFKLD
                     TKQSIFHALLNN"
BASE COUNT         1588 a          897 c          999 g         1598 t
ORIGIN      
        1 catacatata gatactgcaa ctctgcgttt gaaaggaaaa tcatgttagt ttatattacg
       61 ttatccatag tctgcgaagg taattgtatt tatgttctca tacgttttta taatctattt
      121 gttcaaatag tttcttctca tacgttatga ctaaatcctg attgctgata tgctgctgct
      181 cctcgtgatt tgtttccatt atttgactac atgtatgcat atgcatgcaa acttgattag
      241 ataagatcct ggttttcatt atggctaggg aagatgttag attgaagaaa attctatagg
      301 gatacttgaa ttggtctaat tcaatggctc actttgacat aactacccta tattccattt
      361 caggaaacgg cagaatcgat tttgaaacaa catgcatatg gaattgtagt tctatcatcg
      421 atactgcttg agcaagctgt gctggctttg tagatatcaa tgacacgcta gttgcattct
      481 catgtgcgac cgtaacgacc gatacttctg aattctgtct tatggcttct gttattggct
      541 gttgttgtgc gtacagttct atactaggta tccatagcag caccatacta gctgtagcag
      601 tcaatatcaa gccgatacca aaataaactg atctcatgtt tacgttcatt gtttcatttc
      661 attatccaaa tagagactat catttacaat tgtttctata atatattttg cgtgattctg
      721 ggtcactacg cctgtcgttc gctaccttct tcaagtatac ttcgtaccta tcacggccct
      781 ctatttttta atgtttgttc ctgttacgat gttactttat ttacaaaaag ttttaactgc
      841 cttgctatac aaacacatag tgcttgaaga ataatcctag gagtaacaat gcagatacac
      901 tgctaaagct atatgaaata tatgataaac acagggatgc aatcctatgg ttcttggaag
      961 aactggatgc aaataattat gaagaatatt tgaaaaaata ttctggtact tcaagtggaa
     1021 gatccaagtt catagcagtg tgcggatttt ttgaactatc gggtgtcctt gtaagctatg
     1081 gcctgataga tcaaaacctt tactttgaca tgttcaaccc taatcccttc tgggaaaaag
     1141 ccaaatcaat agtagaaggg atgagagaga agagacccca catttatgaa aaatttgagt
     1201 tattgaataa taagagatta agttggacca aaaaaagagg taggacaaaa aaagaggctt
     1261 taaaaagtat aacatagtta atgcgatgtc taaaacagag cggtatcata gcttcttgct
     1321 ggaaaagcga aggaaaaggg tcgttcttgg cgatcgagtt gtagaattgg atgcagcagc
     1381 atagcatagt tcataactaa gcgaactgct ggggcggatg aaattgattg atagaacaag
     1441 gaaatcgacg gtataagtat agataataag tatagataat gccaggctgg tactaagtag
     1501 tacaatttgc agttcatagt tttccgcaga agagaggaat aaagataggt agacaagtag
     1561 tagtagtggt ggtggtggtg gtggtcgtct ttgtctgttc caagtgcagc tctgaactta
     1621 tcagctttat ttcatatgaa acaccctttc aggctttatc ttcagtatga ccctcttttc
     1681 tcccggtgct ctgttaggat atttgtcttt accaaggtac ttttttgcca atttgtctat
     1741 gtgttcatca gcagcatttc cagtaatctg ttctatcact ctccctcgca cggtaaccat
     1801 atcgtacgga ttattttggt cgacgatagc tatcgataat ctcgggtccc tggatacatt
     1861 cttttgcttt attcgaccta ttgccgtatt tacgaagata ttaccatctt cgatatctat
     1921 ccatgtaggc gtattgtgag gatggccatc cttcattaat gtggagacaa aagcgagatt
     1981 cttgccttca aaaagtttcc tgatagaaga atgagttatt tcgttattcg gctcctgact
     2041 cataataagt aaatgcctaa ctcatctaat aactcttgta ctataatttt caagactttt
     2101 ttcacttcat gaagaccaga gtataaaaca ttagcgaaaa ctaagggcaa ttacgacacc
     2161 ggagtctagt ctaactgcct tagaagtatt aagacaattc aagtttcgaa atgagcgtga
     2221 attcccatta ttacggtgac caaaagacgc cactaacgac agacatatat cgactcatgc
     2281 aattagttga tagttttgtt agattacaaa ttctctgaag cgaatatatt ggttggtcgt
     2341 gcaaaaaact ctaagtgagg gtgtattctc cattcattca gttaaagatt caactcggtt
     2401 ttcggatttt gcagatacat gtgaaaaaat acgagcaacc cctagcaaaa atatgaagat
     2461 aaatatactt tccagatacc ttctttcctt ggatgatgaa tctttggcta ttgctgtcct
     2521 gttcttttct aatcgaatat ttccacgagg ctcaaaattc gtcatgaatg taggatttag
     2581 cacaatatta ctggcacttt cagaaatagc tagtctggat ccgaatcaaa ttcagcagat
     2641 atacctgcag catggagata tgggtgcatt atctgagtat gccgtatcaa aaaagaacat
     2701 ggtttcactt tttcagcaac aagccttaac cttatcatcc atctattgcc gacttaaaga
     2761 agttgcagat accataggct ccggttctgg taaagacagg aaaaacatct tgaaggggat
     2821 acttatcaac agctcccccc ttgaagcaaa atatctgata aaaatcataa atgccgaaac
     2881 taggatcggt ttaacagaag gtctggttga aattgcaatt tcaaaagcat ttggtcgaga
     2941 ccttacgtca gttagagacg cgatgcttgt ttcaggagat atttcccatg tggcgctcct
     3001 agcaaggaga ggctcactat ataccgcact agtcagaccc tttacaccca taagttacat
     3061 gttagcagat gtaatgttaa cagcagaaga gataatcaag tattatccaa agcctttgat
     3121 ttgtgaatac aaatatgacg gtatgcgagc acagatgcac aaggttggac aagaaattag
     3181 actgttttca cgtaagcttg ccgacgttac aaatgcattt cctgaattgg ttagtgctgc
     3241 tactgcagcg acgactgtgg gatcgtcgtc atcatcagta ggggatattg attttatttt
     3301 ggacggagaa gtaatggctt ttcaagatgg caaaccactt catttccaag aactccaaag
     3361 aaggcttcat aaaaagaacg tcactgaaca aataatgaca gaaatcccac tcgtatatgt
     3421 agtatacgat gttatgtatt tcaacgggga aaacacaatt acaaagtcca ttaaagaaag
     3481 aaaggagatt ctatcaacta tttcttttaa agaaccaatc atcaattcaa gctacaaggt
     3541 tgtaaattct gaacaagaaa ttattgcaat gtttgaaaaa agcagagaca ttggtcatga
     3601 agggctggta ctaaaggatc cagattctca ttatcatcct ggaaaaagag gacgatattg
     3661 ggtgaagctc aaaaaggaac tagatacaat cgatgcagtt gttgtatctg ctgaatatgg
     3721 acatggaaag agagcaggtt tgctgtctga ttacacattc gcggtaagag aagacaataa
     3781 ttataatagc agcaaattaa gaacgattgg caaggcctat tctggattaa ccgatgttga
     3841 aataactgaa atgacgaaaa aactgacatc aattatgata agagatgagg gctatggaat
     3901 aatagtaaag cccgaaatag ttttggaggt tgcatttgac agtatccaga aaagtgatag
     3961 acatgatagc ggttatgcat tgcgttttcc cagaataaag aatattcgtg gagacaaaaa
     4021 tgttgcagat atagatacgc tccaaagagt cgaacaaatc tacgagaagc aggcttacat
     4081 aatgagtaaa ataggtaggc atggcagcaa gatggattga tgggcatatt cttctcttta
     4141 tttacacttg actaaagccg ctatgctcag ctaatcagat tagcgtcatt attcgtatta
     4201 tgttagtggg agttaaggcg tggcacatct tgaattggag aatcattgta ctccttccgg
     4261 gatcactaga taccattaca ttgtaacaag ttggaaggaa gcacatatgt atgattgcat
     4321 catataatgc acaaattcaa tcctatcttg aatcaaatag tatagtaatc cgatccttca
     4381 gaaaccactt aattgtttaa tagagcatga aatatggatt gctttgtgtc aagcttgaat
     4441 gataacaacg atcctttctt ctctattgga atcctattaa catgagttat cgaaggcata
     4501 ctcttgtata ttccttcata gttatgtata aaattatgtg gtgcgacgtt ctttggagtt
     4561 tgttcctcgt accagtcaat attcactaca tgcctgttcg acagatgaac aagtttactt
     4621 acaacctcat taatttccga tggcagtacg tgcaaaagaa cttctgatgc tattaccaaa
     4681 tcatatttct tgttaatttg aagagattga atatctgata ctatgaattt tatatctggg
     4741 ttcgcttttc cttctttttt tatcaacatt tccgccggtc tgacatattc tttggcattt
     4801 tctatttgat gtgctgacaa atctacggca aggtactctt ttatgttcgg gaagtttatt
     4861 agtaataatt tagttatgcg cccgaatcca caacccactt caagtacact tgcggaagac
     4921 gaaagtgaaa cattattttt tagataatca attagcattt gttcctgtag ctcaaacttt
     4981 ttgttatatc ggaactgttc cttgtacgtc tttccttgtt ctgtccagta atactgcggg
     5041 ttgtaatcta ggatatgatt tgatgatgat gatgatgatg at
//
LOCUS       DASQSJ010000277         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_113254, whole genome shotgun sequence.
ACCESSION   DASQSJ010000277 DASQSJ010000000
VERSION     DASQSJ010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113254"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..>2243
                     /locus_tag="VE223_05420"
     CDS             41..>2243
                     /locus_tag="VE223_05420"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase I"
                     /protein_id="HZC21063.1"
                     /translation="MYFWRDRTNHKPYCFTKIQYRSMVEKIVEKEKKYALEQTIKKDL
                     ISDSEVDLLKIIAPDPLSIGGTENSIREKVTSWEADIKYHENYLYDTGLIPGAYYIRR
                     GEEIIQFENQISHQVQQELENLLWNRIKEVPGKGNNDEYHQYITRWAELLNQPIPDLK
                     RISVDIEVESEEGRMPTPRDHDRRVIAVGFVASDGFKKVLLLKQEKSINPDAPLIHEA
                     ELCHTEKELLQKSFKIISSYPIVISYNGDDFDMPYLYARSQDPRIDPVSRIVIPKNEI
                     PIIIKRDTFIKRGSQAEPVQIRHGLHIDLFRTFQNRSVQIYAFSHKYSEYTLNAICEA
                     LLNDSKIEFEGDIGELPMHKLAQYCLKDADLTFKLTSFNDNLLMKLLIVIARISRLSI
                     DDIARFGVNQWIRGMLYYEHRHRNILIPRRAELQAKGSASTTAIIKEKKYRGGLVVEP
                     VLGIHFGVIVVDFASLYPSIIKVHNLSYETVNCTHQSCKNDPNQQIPGTTHWICKEKR
                     GLTSLLIGSLRDLRVNYYKYLSKNKALSSEERQLYNVVSQAIKVILNASYGVMGAEIF
                     PLYCLPVADATAAIGRTTTTKTIEKCKEIGIDVVYGDTDSLFLKNPTNAQVEQISAWA
                     RSNLGVDLEIDKQYRYVVFSELKKNYLGVLADGTVDVKGLTGKKSHTPPFIRNAFYNI
                     LDILSKVNSEIDFESAKEKIKNIIQENARNLESRKIPSSDLSFNVMENKSPG"
BASE COUNT          806 a          377 c          435 g          625 t
ORIGIN      
        1 aacgatttat ctaaagtttt atgatactaa agataacact atatatttct ggcgcgatag
       61 aactaatcac aaaccatatt gctttacaaa aatacaatat cgcagtatgg ttgaaaagat
      121 tgttgagaaa gaaaaaaaat atgcgctaga acaaacgatt aaaaaagatc tgatctctga
      181 tagtgaggtt gatctattaa agataattgc acctgaccca ttgtctattg gtggtacgga
      241 aaacagtatt cgagaaaaag tcacttcatg ggaggcagac ataaaatatc atgaaaatta
      301 tctttacgat actggattaa ttccaggtgc atactacatt agaagaggag aagaaatcat
      361 acagtttgaa aaccaaattt ctcatcaagt tcaacaagaa ttggaaaact tgctatggaa
      421 tagaataaag gaagttccag gaaaaggaaa taatgacgaa taccaccaat atattactag
      481 gtgggcggag cttctcaatc aacctatccc tgatctaaaa aggatttctg tagatattga
      541 ggttgaatcc gaagaaggaa gaatgcctac tccacgtgat catgatagac gcgttattgc
      601 tgttggattt gttgcaagcg acgggttcaa aaaggtgctg ctattaaaac aggaaaaatc
      661 tatcaaccct gatgctcctt taatccatga agcagaactc tgccacactg aaaaggagct
      721 attacaaaaa tcatttaaaa ttatcagctc atatccaatt gtcattagtt ataatggtga
      781 tgattttgac atgccatatc tttatgctag gtcccaggat ccgagaattg atcctgtcag
      841 taggatagtc ataccgaaaa atgaaattcc aatcataatc aaaagggata cttttataaa
      901 aagaggttcc caagctgaac ctgttcaaat aagacatgga ttgcacattg acctgtttag
      961 aacatttcaa aatagatccg tacaaatcta tgcttttagt cacaaatact cagaatatac
     1021 acttaatgca atttgtgaag ctctgctaaa cgatagtaaa atcgaatttg aaggcgatat
     1081 tggcgaatta ccaatgcaca agttagcaca atattgtctt aaagatgccg atctaacctt
     1141 caaattgaca agtttcaacg ataatttgtt aatgaagctc ctgatagtca ttgcaagaat
     1201 aagtaggtta tctatagacg atattgcaag atttggagtc aatcagtgga taaggggtat
     1261 gttgtattat gaacaccgtc atcgaaatat tcttattcca agacgtgctg aactgcaggc
     1321 aaaaggcagt gcttcaacta ctgcaataat aaaagaaaag aaatatcgtg gtggactggt
     1381 ggtagaacct gtccttggta tacattttgg tgttatcgtg gtagactttg caagtcttta
     1441 tccaagcatt attaaagtac ataatctctc ctatgagaca gtaaattgta cacatcaatc
     1501 atgtaaaaat gatcctaatc agcaaatacc gggtactaca cactggatat gtaaagaaaa
     1561 gagggggctt acatcactct tgattggatc gctacgcgat ttaagagtca actactacaa
     1621 atacctgtcc aaaaataaag cattgtcttc tgaagagcgg cagttgtaca acgtagttag
     1681 ccaggcaatt aaggtgattc tcaatgccag ttatggagtg atgggcgcag agatatttcc
     1741 tctctactgt ttaccggtag ctgatgcaac tgctgccatt ggaaggacga caactacaaa
     1801 gacaattgag aaatgcaaag aaataggtat tgatgtagta tacggagata ctgactcact
     1861 tttcctaaag aatccaacta atgcacaagt tgaacagata tccgcgtggg caagaagcaa
     1921 tcttggagta gatcttgaaa tagacaagca atatcgttat gtggtattca gtgaacttaa
     1981 gaaaaattac cttggtgtat tggcagatgg aacggtagac gttaaaggtc ttactggaaa
     2041 gaaatctcat actcctccat ttatacgaaa tgcattctat aacattttgg atattttaag
     2101 taaggtgaat tcagaaattg attttgaatc cgccaaagaa aagatcaaaa atattatcca
     2161 agaaaatgcg agaaacttgg aatctaggaa aataccatca tctgatctca gctttaatgt
     2221 aatggaaaat aagtcccctg gca
//
LOCUS       DASQSJ010000278         2433 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_351986, whole genome shotgun sequence.
ACCESSION   DASQSJ010000278 DASQSJ010000000
VERSION     DASQSJ010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351986"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            798..1268
                     /locus_tag="VE223_05425"
     CDS             798..1268
                     /locus_tag="VE223_05425"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HZC21064.1"
                     /translation="MCNLTIHPNFIGYHKCGYANCPICKNAITNSQYWYHIRSHPGHE
                     NDSPPLPREKSEARGKYKRSYSEAEGNSNSNSSSSSSSSRSFGYSSLAGRPTAVLEVG
                     KEYEVDVTEISRQGDGIARVRGFVVFVKNAKVGQKVRIRVEHVGNRYATATMAS"
     gene            1779..2057
                     /locus_tag="VE223_05430"
     CDS             1779..2057
                     /locus_tag="VE223_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21065.1"
                     /translation="MENQGSNPNSSNSCDSRIHAYKNGKTMEECRQEAIKTTELLSEE
                     ISNIGEVSWKRVLEVTDYDELVYKLTLKYLRQKGYDIGNNTIPRVKNI"
BASE COUNT          819 a          399 c          471 g          744 t
ORIGIN      
        1 actaagcttg ctggaataat tgcggcagta tactctattt ggattctaac tatcgattgc
       61 ctaccagaga agatacggga gtactgatgg gaactcactt cttatttgag gccgcaatta
      121 ttccagcaag catagtaatg acatatttga tgtgccacat acagtagttg atatggtaaa
      181 ccgttagagc tatgccaagg actgatcatg tataaaagag tatgactttg agcatatctt
      241 ctcccacaag ccttcagacc aattaatttt acctatagac tcgcaaaaat taggcataag
      301 gttaaatctt tgaatataca tatatataat catccgacta gccaaaagag aagaacgatc
      361 catcattcag aatctgcaca ataggtaaag gcctgttgtg tctacagaaa tgatgagttg
      421 ccgtcatatg atgataatag gtatatcttc aattcgaaag aacttgaaga actccacgat
      481 gatatggcgg taagggcaaa ccaagaggtg gcattggaac ttattaaaaa gccatcttaa
      541 taggaaagcc acatgtcttt gagagctagt cggattttaa tattaagcaa taccttataa
      601 aattaaataa gtctgacaag tgatttcact gtgagcttgc tggatgtatc agcatacatg
      661 taataagacc taagctgcgt gtaatgatgt aaattgacat attttttaga tgagcatcta
      721 gccgatacat ctaattgtgc attagtgcta agaagtgttg agcatacttg aataattata
      781 ataataatat atgcaacatg tgcaatctaa ctattcatcc aaactttata ggatatcata
      841 aatgtggtta tgcaaactgt cctatttgta aaaatgcaat cacaaattca caatactggt
      901 atcatataag atcacatcca ggacatgaga acgacagccc tcctctacca agggaaaaat
      961 ctgaagccag aggaaaatat aagagaagtt atagtgaagc tgagggtaat agtaatagta
     1021 atagtagtag tagtagtagt agtagtagga gcttcggcta tagttctcta gctggaagac
     1081 caacagcagt attagaggta ggcaaggaat acgaagtaga tgttacagaa atcagcaggc
     1141 aaggagatgg aattgcgaga gtacgaggat ttgtagtatt tgttaagaat gcaaaagtcg
     1201 gacagaaagt taggattagg gttgagcacg taggaaatag gtatgctaca gcaacaatgg
     1261 catcataaga attagttgtt ttctttttat tgttaggtca taagcgatca ggcgatgcag
     1321 gcgatatttg tttataatat aggattgtag ttaccgtaac catttcgctt tattctttat
     1381 tctttgggat aatatcaccc atgtattttt tcttcaactt tttgctttca ggatttttcc
     1441 aataagcata gtaataaggc ccatgcttta gtacacacat ttgctttcca catttgacgt
     1501 agcagcaatt ccaatggcaa tttccataat tcaattgagt tcaaaaggcg ggtagctagt
     1561 atacactaaa catagaacaa gcccgggtac tctttttgcc attctttcaa agtactcaac
     1621 gaaagccttc ttaccatcag ccacctcagc acataagact atctatctat atatacatga
     1681 tggctataat tatttccttc caaaatgctt accattagct ctaaaaagat tcataacaaa
     1741 taaactgttt aaattgttgc taacccgttt ttaacatagt ggaaaatcag ggtagtaatc
     1801 ctaatagtag taatagttgc gattctcgta ttcatgctta caagaatggc aaaacaatgg
     1861 aggagtgcag acaagaagca ataaagacta cagagttatt atcagaggaa atttctaaca
     1921 ttggagaggt ttcgtggaaa agagtgttag aagtaacaga ctatgacgaa ctagtctaca
     1981 aattgacctt gaaatattta agacaaaaag gctatgatat tggcaataac actatacctc
     2041 gtgtaaagaa tatttgaata tagatagtct gcatattatc catcattacg ttgctgtaat
     2101 atgcagtata gaggagatta cacttgtatt aatcccaacc agctcgttga aatagttgag
     2161 ccaatttcaa ctgatgtgtt cagatctttg gaaattgtcc ctcaatgtag tacaatccta
     2221 tgtatgtaga ggtcgctata atgttaaatc atttggcaac tatatggtat accaattaag
     2281 tcttatgtaa agacgtcatc gtataagtca tctctcattt gttaattttg attggacttc
     2341 cttcagctga attgaatgct gttgtgacct tttgagaaga gggtagcttg cttgtatatt
     2401 cttgattgcc atttatttga tcagaaatcc tct
//
LOCUS       DASQSJ010000279         4699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_152100, whole genome shotgun sequence.
ACCESSION   DASQSJ010000279 DASQSJ010000000
VERSION     DASQSJ010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152100"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1187
                     /gene="rpoA2"
                     /locus_tag="VE223_05435"
     CDS             <1..1187
                     /gene="rpoA2"
                     /locus_tag="VE223_05435"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit A''"
                     /protein_id="HZC21066.1"
                     /translation="GRKASEHDIKNILAKYAENLNPRLRKNLEDSLLENRLSKEGAEK
                     VLKKTVDLIEKALAEPGEAVGVVTAQSIGEPGTQMTLRTFHFAGVKERNVTLGLPRLI
                     ELVDARKKPVTPTMDIYLDDNHKSSREKALEVAREIIFTRVSDLVEKTDTDYSGILTF
                     QFSEDKLLERGCEIKEVHEVLKGSKKKYEIQLNDKKQFIKITIPDEPDAQTLLTLKNK
                     LLNTRVKGVPDIERVTIVKQDQEWVIQTAGSNLSKVVAINGIDTSRITTNNVYEIWQT
                     LGIEAARTALVKEITNTLEEQGLEVDTRHIMLVADLMTSKGYLQQIGRHGIAGTKTSV
                     LARAAFEITVPTIAKASLEGQVETLRGVTENVIVGATVPVGTGMVELYMMVKEQSGQD
                     DR"
     gene            1168..1491
                     /locus_tag="VE223_05440"
     CDS             1168..1491
                     /locus_tag="VE223_05440"
                     /inference="COORDINATES: protein motif:HMM:NF013417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal L7Ae/L30e/S12e/Gadd45 family protein"
                     /protein_id="HZC21067.1"
                     /translation="MAKTIDKVLKDALTANKYRFGTKEVLKSVKGSKLIILSTSVEDE
                     NRSMIEEQAKSSNVPVYKFDGNSFKLGKLCNKPFRISIIALKAGTDTQINSILSESTK
                     EQKTI"
     gene            1795..2277
                     /locus_tag="VE223_05445"
     CDS             1795..2277
                     /locus_tag="VE223_05445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HZC21068.1"
                     /translation="MMTEKIKLTSDELRLISLFQSITSATARDCIVDDKMDRVIFIVN
                     KGQMGLAIGKGGTTIRQLQNVVAKKVELVEYSDDPSEFIRNILNSEMINEVKINERVD
                     GTMQAIVSVDAKKKGVVVGKEGRNAEKARLLAKRYFQISNVLIVSEDQFPMHKNQVNI
                     "
     gene            2278..2715
                     /locus_tag="VE223_05450"
     CDS             2278..2715
                     /locus_tag="VE223_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HZC21069.1"
                     /translation="MAKSPLGLFAGRVLKAKRNRARWANKYYKRRMLMLDKKANPLEG
                     SPQARGIVLEKVGIESKQPNSAVRKCVRVQLIKNGKSITAFLPKDGALNFVDEHDEVG
                     LEGIGGSMGGAMGDIPGVRWQVFKVNGVSLNELVRGRKEKPRR"
     gene            2721..3329
                     /locus_tag="VE223_05455"
     CDS             2721..3329
                     /locus_tag="VE223_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HZC21070.1"
                     /translation="MSGKERVNILLFNKWDTSKIEVSDLGLQKAISLRLPGVYPITFG
                     RHEHQRLKKAEVNVIERLANNMMHFGKRYAKNTGRMGGKKMRVLKIIKTALDIIHVET
                     GKNPVELVVRAIENASPNEDTTRIVYGGVVYHVSVDVAPLRRVDLALRFIAEGVKEST
                     YSNPQAIEEALANEIIRAANNDMASHAIKKKNEQERIAMASR"
     gene            3391..4584
                     /locus_tag="VE223_05460"
     CDS             3391..4584
                     /locus_tag="VE223_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21071.1"
                     /translation="MNGKDESVFTKSALMGTRSGRIILKQILFRESGYKQFSKYKQKT
                     EQEFPEFTKRFLVSLHEKITSDTNPSGTLKKFLDEVGSSEFTLDEHKINDVKSRLSKP
                     DVLSDRLGRILNSNFVKMTFPVFTALFDGASDYLKENVPTDIKNSIIDGHILAIDLSE
                     PMDRIIDKDEDFEYLDDYKLMSPYILEIAREKISRGGDSILKTFEEGFKDARIGQYID
                     SKLKSKPESIYDEGMIGCYKKYRAVMGSAGRNMALNHRPLGDIYHLGMAKAGECVGCG
                     NEIEDAVKSGSIKIPSWPLYYSLNVGDIKKGFELTMKKSKIYSDDARIALQMLPQGYP
                     IMPFLEFLFVTISHYNEYWYNEMVRRNLFPYFEKNTNVLVDYQKNIKALENKDKEKKV
                     FSGSS"
BASE COUNT         1676 a          777 c         1029 g         1217 t
ORIGIN      
        1 aaggtaggaa ggcctcggaa catgatatca agaacatatt agcaaaatac gctgaaaatc
       61 ttaaccctcg gctacgaaag aacctagagg attctttgtt ggaaaacaga ttgagcaaag
      121 agggggccga gaaagtattg aaaaaaactg ttgacctaat tgaaaaagct ctcgcagaac
      181 ccggtgaagc agtaggcgtt gtaactgcgc aatcaattgg cgaacccgga acccaaatga
      241 ctctaaggac atttcacttt gccggtgtga aagaaagaaa tgttactctg ggtcttccta
      301 ggctaataga gttggtagat gccagaaaga aacccgtaac accaaccatg gatatatacc
      361 ttgacgataa tcacaagtca tccagagaaa aggcgctaga agttgcaaga gagatcattt
      421 ttacgcgagt aagtgattta gtagaaaaaa cagacactga ctatagtggc atactcactt
      481 tccaattctc agaggacaag cttttagaac gaggttgcga aataaaagag gtccatgagg
      541 tcttaaaagg ttccaaaaag aaatacgaaa ttcaactaaa cgacaagaag caatttatca
      601 aaataactat ccctgatgaa ccagatgctc aaacgctttt gaccctaaag aataagttgc
      661 taaatactcg cgttaaagga gtacctgata tcgaaagagt tacaattgtc aagcaagatc
      721 aagagtgggt tattcaaact gctggatcaa acctttccaa agtggtagca ataaatggaa
      781 tagatacttc gaggatcaca acgaataatg tttacgagat atggcaaacg cttggaatcg
      841 aggcagctcg tacggctctt gtaaaagaga tcacgaatac tcttgaagaa caggggcttg
      901 aggttgacac aagacatatt atgttagtag cagatctcat gacatctaag ggatatttgc
      961 aacagatagg cagacatggt attgctggaa ccaaaacatc tgttctggct cgtgcagcat
     1021 ttgaaattac tgtaccgact attgctaagg cttctctgga gggtcaggtt gagacattaa
     1081 gaggagttac agaaaacgtt atagtgggtg ccacggtacc tgtaggaaca ggtatggtag
     1141 aactctatat gatggtgaag gaacaaagtg gccaagacga tagataaagt acttaaagac
     1201 gccttgactg ctaataaata tcgatttgga acaaaagaag tacttaaaag cgtcaaaggt
     1261 tcaaaattga taatactctc cactagtgtt gaagacgaga atagatccat gatcgaagag
     1321 caggctaaat cgtccaacgt tccggtttac aaattcgatg gcaattcttt caaacttggc
     1381 aagttatgca ataaaccatt cagaattagc ataattgcac taaaggctgg aacagataca
     1441 caaataaact ctatcctttc agaatcaaca aaagagcaga aaacaatttg acagaatact
     1501 aataatagta agacttctag gatgtcatta tcatactaaa atttaattta ttcttcagat
     1561 ttccaatgat atacgaattg cccaaaatct tgcgtactaa gttaattttt aaaaacacga
     1621 tctagatacg tagtctagag cacattggaa aggtacgatt tgcgtactga gcacatgtta
     1681 atagcagtac aaagtatgat cgcgaataga cttaaattgg acttcgtcaa tcagcatgaa
     1741 ttgttgttca atgctatcaa aatgcaaatg ctccgactat tttagaggtt gtagatgatg
     1801 accgagaaaa taaaattaac ttctgatgaa ttacgcttaa tatctctctt tcagagcatt
     1861 acaagcgcta ctgcaagaga ttgtattgta gatgataaaa tggaccgagt aatttttatt
     1921 gttaataagg gtcagatggg tctagcaata ggtaagggtg gcacaacgat cagacaatta
     1981 cagaacgttg ttgcaaagaa ggttgaactt gttgagtatt cagatgatcc ctctgaattc
     2041 atccgaaaca tactgaattc tgaaatgatc aacgaagtaa agataaatga aagggtcgat
     2101 ggaacaatgc aggctatcgt gagtgttgat gctaaaaaaa agggagtagt agttggaaaa
     2161 gaaggccgaa atgcggagaa ggctagattg cttgcaaaac gatacttcca aatatccaat
     2221 gttttaatag taagtgagga tcaattccca atgcataaaa atcaggtgaa tatttagatg
     2281 gctaaatcac cactagggct atttgcaggt cgcgttctca aagcaaaaag gaaccgagct
     2341 aggtgggcga ataagtatta caagcgaaga atgttgatgc ttgataaaaa ggctaaccca
     2401 ctcgaaggct ctccacaggc tagaggtatt gttttagaaa aagtgggcat agaatccaag
     2461 cagcctaatt ctgctgtcag aaaatgcgta agagtacagt taataaaaaa tggtaaatca
     2521 ataacagctt ttcttcccaa agacggtgct ttgaatttcg tcgatgagca cgatgaggtc
     2581 ggattggagg gaatcggagg atcgatggga ggagctatgg gagatatacc aggagtccga
     2641 tggcaagtct ttaaagttaa tggcgtatca ttgaatgaac ttgtccgcgg gaggaaggaa
     2701 aaacctagga ggtaactaag atgagtggca aagaacgtgt aaacatatta ttattcaata
     2761 aatgggatac aagtaagatt gaagtaagtg atcttggcct ccaaaaagca atttcgctaa
     2821 gattgccagg tgtataccct atcacctttg gaagacacga acatcagaga ttaaagaaag
     2881 ctgaagttaa cgtcatagaa agattagcaa acaacatgat gcattttggt aagagatatg
     2941 caaagaacac cggtaggatg ggaggtaaaa agatgagggt tcttaagatc attaaaactg
     3001 ctcttgacat catacatgta gaaacaggta agaaccccgt agagctagtg gtaagagcta
     3061 ttgaaaatgc atcaccaaat gaggacacaa cccgtatagt ttacggtggc gtcgtatatc
     3121 atgtatctgt agacgtcgca ccactaagaa gagttgatct tgcgcttaga tttattgctg
     3181 aaggtgtgaa agaatctaca tattctaatc cacaagcaat cgaagaagcc ttagcaaatg
     3241 agatcataag agcagcaaat aatgatatgg caagtcatgc tataaagaaa aagaacgagc
     3301 aggagcgaat tgcaatggcc tctcgttaat tcgttgttta ctgatcttaa tagttaaata
     3361 attgctgatt gttacttcaa ctgtatatgt atgaacggaa aagatgaatc tgttttcaca
     3421 aaatctgctt taatgggaac cagatcagga agaattatcc tcaagcagat actctttagg
     3481 gaatctggat ataaacaatt cagtaaatac aagcagaaga cagaacaaga gttccctgaa
     3541 tttacaaaaa gatttcttgt ttccttgcat gaaaagatta cttctgatac caatccttct
     3601 ggcacattga aaaaattctt agacgaggta ggatcctctg agttcactct ggatgagcac
     3661 aaaatcaatg acgtaaagtc aaggttgtca aaaccggacg tactctcaga ccgtttaggc
     3721 agaatcctga attctaattt cgtaaagatg acatttccgg tttttacggc attgttcgac
     3781 ggggcatcgg actatttgaa agaaaatgtg cctactgata taaagaattc catcattgat
     3841 ggccatattt tagcaattga tcttagtgag ccaatggaca gaataattga taaagacgaa
     3901 gatttcgagt atcttgacga ttacaaactt atgagtccct atatattaga aattgcaaga
     3961 gaaaaaattt ctcggggtgg cgattctatt ttaaagacat ttgaagaagg attcaaagac
     4021 gcaagaattg ggcaatatat agactccaag ttgaaaagta agccagagtc catttatgat
     4081 gaaggcatga taggctgtta taagaagtac agggcagtaa tgggatctgc cgggagaaat
     4141 atggctttaa atcataggcc tttgggagac atttaccatt tgggtatggc aaaggcaggt
     4201 gaatgtgtgg gttgtgggaa tgaaatcgaa gacgctgtga agagcggatc tatcaaaatc
     4261 ccatcttggc ctctatacta ctcgttaaac gtcggagata taaagaaggg ttttgagctt
     4321 acaatgaaaa aaagtaagat ctattccgat gacgcgagga ttgcactaca aatgctacca
     4381 caaggctatc caattatgcc atttcttgaa tttctatttg tcacaataag tcactacaat
     4441 gaatattggt ataatgaaat ggtcaggcgt aacctgtttc cttacttcga gaagaacact
     4501 aatgtccttg tagattatca aaagaatata aaggctctag aaaacaaaga taaggagaag
     4561 aaagtattca gcggtagtag ttaagtagtt aagtgcaaag atacgccaaa ttttttctat
     4621 atcacacaat aaataatcct gatgatggat agcgcagaaa taatttggat caatcaaaac
     4681 ctaatttata gccgaacac
//
LOCUS       DASQSJ010000280         7100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_56336, whole genome shotgun sequence.
ACCESSION   DASQSJ010000280 DASQSJ010000000
VERSION     DASQSJ010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7100
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56336"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(63..788)
                     /gene="hisA"
                     /locus_tag="VE223_05465"
     CDS             complement(63..788)
                     /gene="hisA"
                     /locus_tag="VE223_05465"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HZC21072.1"
                     /translation="MCHEKMRIIPAIDIMDGNVVRLRKGNPDDKVTYSNNPIEIAKKW
                     EISGADILHVVDLDAALSTNKNNIEIISKLIDAVNIPVQVAGGIRSIEAINEMFSKNA
                     AKVVLGTMAYKEPDSIRHIAKKRGEKIIVSIDQNDGKIMINGWREIAGPRIDEAINLF
                     MSMGIREFLVTSVDRDGMLTGPDISTLSYASSFPGVRIIASGGISSIEDVIRVRSIGC
                     SSIILGKSLYESNLSIEKVKALV"
     gene            complement(770..1390)
                     /gene="hisH"
                     /locus_tag="VE223_05470"
     CDS             complement(770..1390)
                     /gene="hisH"
                     /locus_tag="VE223_05470"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HZC21073.1"
                     /translation="MTKIAIFDYGAGNLFSLKASLERNGAQRVFIIHDMKNLDKFDGL
                     ILPGVGNFDPAIKSIEPNKELLIEAIKDSMPMLGICLGMEMLFNKSEEGMLEGLKILD
                     GDVLMLPKKKVKIPHIGWNNLEISKKETKLLEGIRNSSWVYFVHSYYVSPKIKSIVAA
                     KSEYDIVIPAVIEKDNIFGTQFHPEKSGNIGATIIRNFLGVCATRK"
     gene            complement(1390..1986)
                     /locus_tag="VE223_05475"
     CDS             complement(1390..1986)
                     /locus_tag="VE223_05475"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HZC21074.1"
                     /translation="MSYPLRRIAKMERITKETSVAVEVNIDGSGKTAVKTNIPFIDHL
                     ITAIGKHSMIDIILSGKSNDGITHHLIEDVSIILSQTIDKALCDRSQITRFGYAIVPM
                     DESLAYVSIDLVKRQFCNIQLKLTRDVIEGIPREDLEHFVCSLIQNLNACTHIVIEYG
                     NNDHHKIESAMKAFAISLRMASSIDEKRKGVPSTKGTM"
     gene            complement(1998..2990)
                     /locus_tag="VE223_05480"
     CDS             complement(1998..2990)
                     /locus_tag="VE223_05480"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HZC21075.1"
                     /translation="MYKSIGKRVFINRKLKSFNVDCALFDIDGVIVDVRKSYDLAIKK
                     TVDFIVKHITGTSIFDGLVTEEMILKFRRTGGFNNDVDTSYAIIISALADYYHGNVNQ
                     LRKFIHNVATKANASGIISVERFLSSSPSLEKLKELLAYPGPVGQSIVATVFDELFYG
                     PELFKKKHRLEPKYYFGKPLIENDILVATRTAINALSEIFNGNIAIVSGRSKLAAEHS
                     LKPIFDIFNQHVSIYLEDENRKYSKPNPYAIKKAMSNMNAKTAIYVGDSAEDILMTRR
                     IEEETGVKITFFGIYGCSTKPADTIKLFKENGADAIIETVNQLPNILNKALIKL"
     gene            complement(2983..4065)
                     /gene="hisC"
                     /locus_tag="VE223_05485"
     CDS             complement(2983..4065)
                     /gene="hisC"
                     /locus_tag="VE223_05485"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HZC21076.1"
                     /translation="MNNWVYAKLDKISKFDTYNISEKNKDSLKLDANENYVLKKKFIL
                     EIALQAAKDTDLREYPIDQFKELYRQLAKYTGISKKYIAVGNGSDQIIELILSIIDKG
                     QRVTIFTPTFSYFINRCKFHDLTVDRVPLSRENNALDKVEFLKSAKRSDIVYICSPNN
                     PTGNQFDKQPILEIIDLLKDKLILLDEAYVEFADYSLIQVATKYDNVVVLRTLSKAFG
                     LAGARVGYFIANERFAQIFRSKIQSPYPLNSLSLTIASLALSQFKYVNKTVKTIKDER
                     KRVFDQISRIKGIKAFESNANFIFFESHNKYNAILKSLKKERLVVKAFGNVEGRIGCI
                     RVTIGTKNMNDRFLESIERAVCKQNV"
     gene            complement(4062..5354)
                     /gene="hisD"
                     /locus_tag="VE223_05490"
     CDS             complement(4062..5354)
                     /gene="hisD"
                     /locus_tag="VE223_05490"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HZC21077.1"
                     /translation="MIKTIIIIDPRSDAAKLRNSISSISDDLFQKTKLIMDDVAKYGD
                     SALFDYTEKFDGVRLNSLKVTDEEIKKAYNKVTTEQVHSIKIMKERLIMGEKVLLKRL
                     RGIVMSSRGVRVQRIVRPVSSVGCYIPGGKARYPSTMVMCAIPAKVAGVKRVVALSPP
                     LRDGTVDPLTLVAADICDVDEFYKVGGAHGIMALAFGTPTISKVSKIVGPGGIFVTIA
                     KILASSKVSIDMIAGPTELLIYADSKADPKLIAFDLISQSEHSYDTLCGLVTTSKEFA
                     VQVTDTLQSILEKSTIKRADIVKRSLEENGFIAVCKNESAAVEFINELAPEHLEIIAT
                     NARTISKNIISAGLVLIGKYTPSSASDYCLGSNHVLPTSGFSKSRASLSVLDFVKIVN
                     TIQATKQGLKKVEPIVKQISMAEGLTNHYEAIRERFKK"
     gene            complement(5351..6331)
                     /gene="hisG"
                     /locus_tag="VE223_05495"
     CDS             complement(5351..6331)
                     /gene="hisG"
                     /locus_tag="VE223_05495"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HZC21078.1"
                     /translation="MPTVKFAVPKGSIEEATFRILEEAWQSISGKRRTYRIRLSDPEI
                     EVKILRPQEIPTYVQEGFYDVGITGKDWIREANADVRTLLDLEYGRVKQVIAIPENFE
                     ANDLTSLIIDFAKKNKPLRLSSEYLTTTASHIKSNHAYKKYFGDTNPMIITPWLRVGE
                     NKNVQIYLSFGATEAKPPEDVDAIFDITETGTTLGQNNLKIIDTVMESTAVLLANKNA
                     LKDAKKKEKIADMVALLKGVVEGRKKLHIFVNVEERNLDNLLKNMPALKRPTISPLSE
                     KGWYGVNTVIDKNEFIKIVPMMRKMAQGLVVMETRQILPLDDLNIDDEYS"
     gene            complement(6756..>7100)
                     /locus_tag="VE223_05500"
     CDS             complement(6756..>7100)
                     /locus_tag="VE223_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21079.1"
                     /translation="MAVGIVGGVVSVHPVAKVALKILGVKTSNELAMILSAIGLAQNL
                     AAIRALASEGIQKGHMKLHARNVAVMAGAKSDLVDRVAKRITEENNINITRAKEILAL
                     LMKINKNRKKFT"
BASE COUNT         2012 a         1407 c         1138 g         2543 t
ORIGIN      
        1 tgactactcg gccatcgtcg acatctaaac atggaatgat cctctttgct agtggcatct
       61 atctatacca acgcctttac tttctcaata cttagattgc tctcataaag ggactttcca
      121 agaatgatag aagagcaccc aatactccta actctgatta catcttcaat gctagaaatc
      181 ccaccacttg ctattattct tacccccggg aagctacttg cataagacaa agttgagata
      241 tccggtccag ttaacattcc atctctatct acacttgtta ccaaaaattc tctaatgccc
      301 attgacataa atagatttat cgcttcatct attcttggac cggcaatctc tctccatcca
      361 tttatcataa tcttaccatc attctgatca attgagacta tgattttctc gcctcttttc
      421 ttagcaatat gtcttattga gtctggttct ttgtaagcca tggttcccag tacaacttta
      481 gctgcatttt tactaaacat ctcatttata gcttcaatcg atctaatgcc accagctact
      541 tgaacaggaa tattgactgc atcaattagc tttgaaataa tttcaatgtt gttcttattg
      601 gtagacaatg ctgcgtcaag gtcaacaaca tgtaatatat cggctcctga tatttcccat
      661 ttttttgcaa tttcaatagg attattacta tatgtcacct tatcgtcagg attgccttta
      721 cgaagtctga caacgtttcc atccataatg tctattgcgg gtattattct cattttctcg
      781 tggcacatac tcctagaaaa tttctgatta tggttgcacc tatattacct gatttttcag
      841 gatggaattg ggtaccaaag atattatctt tctcaattac tgctggaata acaatatcat
      901 attctgattt tgcagccact atgcttttaa tttttggaga tacataataa gaatgtacaa
      961 aatataccca cgaactattt ctgatgcctt ctaaaagttt agtttctttc ttagatattt
     1021 caaggttatt ccagccaata tgtggtatct tgaccttttt cttgggcagc attaatacat
     1081 ctccatcaag aattttaagg ccctccaaca ttccttcttc gcttttgtta aataacatct
     1141 ccatgccaag gcaaatacct agcattggca tagaatcttt gatagcctct atcaacaatt
     1201 ctttattggg ttcaatagat tttatagcag gatcaaaatt gcccacgcct ggaaggatta
     1261 atccatcaaa tttgtcgaga ttcttcatgt catgaattat aaaaacgcgt tgggcgccat
     1321 ttctttctaa agatgccttt aaactgaaga gatttcctgc cccatagtcg aatattgcta
     1381 tcttggtcat cacattgttc cttttgtgct aggtactcct ttccttttct cgtcaatact
     1441 agaggccatc ctaagggata ttgcaaatgc cttcattgca gactcaattt tatgatgatc
     1501 attatttccg tattcaataa ctatatgtgt acaagcgttc aaattctgta taagtgaaca
     1561 tacaaagtgt tcaaggtctt ctcttggaat tccttcaata acgtctctag ttaattttaa
     1621 ttgtatattg cagaattggc gttttacaag atctattgat acatatgcta gtgattcatc
     1681 cattgggact attgcatatc caaatcgagt gatttgcgat ctgtcacaca gtgctttgtc
     1741 tatagtttgt gaaagaatta ttgacacatc ttctatgagg tgatgcgtaa taccgtcgtt
     1801 ggatttgcca cttaggataa tatcgatcat actatgctta ccaatagcag taataagatg
     1861 atctatgaat ggaatatttg ttttgactgc tgttttacca gagccatcaa tatttacctc
     1921 tactgcaact gatgtctctt tggtgattct ttccatcttt gcaattcttc gtagaggata
     1981 agacatgacc aagataatta caattttatc aatgctttat ttaatatgtt tggtagctga
     2041 ttgacagttt cgattattgc atcagcgcca ttctctttga atagtttgat ggtatccgca
     2101 ggtttagtac tgcatccata gatgccgaaa aaagtgattt taacccccgt ttcctcttca
     2161 attcttctcg tcatcagtat gtcttctgct gaatctccaa cgtaaatcgc agttttggca
     2221 ttcatattac tcatagcttt ttttattgca tacgggttgg gtttagaata ttttcgattt
     2281 tcatcttcaa gatatataga tacatgttga ttgaaaatat caaatatggg ttttaaggag
     2341 tgctctgccg ccagtttact cctacctgaa actatagcaa tattgccatt gaatatctct
     2401 gagagtgcat ttatcgcagt tctggtggcc acaagtatgt cattttcaat tagaggtttt
     2461 ccaaaataat attttggttc aagtctgtgc tttttcttga ataattctgg tccatagaat
     2521 agttcatcga aaacggttgc tacaatgctc tgcccaacag gaccagggta agccagaagt
     2581 tccttaagtt tctcaagaga aggcgaggag gataagaacc tttcaactga aataataccg
     2641 cttgcattgg ctttagtagc tacattatga ataaattttc ttagttgatt tacattcccg
     2701 tggtaataat cagccaatgc tgaaatgatt atggcataac ttgtatcgac gtcattatta
     2761 aaacctcctg tacgtctaaa ttttagaatc atttcttccg ttactaagcc atcaaagata
     2821 gatgttcctg taatatgttt aacaataaaa tctacggttt ttttaatagc cagatcgtat
     2881 gactttctta catccacaat gacgccatcg atatcaaaaa gagcacaatc cacattaaat
     2941 gacttgagct ttctatttat gaaaactctt ttgcctatag atttatacat tctgtttaca
     3001 tactgctcgt tctatagatt caaggaatct gtcattcata tttttagtac cgattgtgac
     3061 tctaatgcaa cctatgcggc cctcaacgtt gccaaatgcc ttaactacta acctttcttt
     3121 tttcaatgat tttagaattg cattatattt attatgagat tcaaagaaaa tgaagttagc
     3181 attagactca aaagccttga tacctttgat tctactaatc tggtcaaata ctctttttct
     3241 ttcgtcctta atcgttttga ctgtcttgtt gacatatttg aattgtgata atgctaggct
     3301 tgctattgtt aatgataggc tattcagagg ataaggagac tgaatctttg atctgaatat
     3361 ttgtgcaaac ctctcatttg ctataaaata gcctactctg gctccagcca atccaaatgc
     3421 tttagaaaga gtacgcaaca caacgacatt atcatatttg gtagcaactt gtattaagga
     3481 ataatctgca aactcgacat aagcctcgtc aagtaaaatt agcttgtctt tgagcaaatc
     3541 tataatttct aatattggct gcttatcaaa ctgattgcct gttggattgt ttggagaaca
     3601 aatgtataca atgtcagatc gtttagcgct ctttagaaat tccactttgt ccagagcatt
     3661 attttctctg ctgagtggca ctctatccac tgtcaaatca tgaaatttgc aacggtttat
     3721 aaaataagaa aatgttgggg taaaaatcgt gactcgctgt cccttatcga taattgacag
     3781 aattaattca attatttgat ctgacccatt tcctactgca atatactttt tactaatacc
     3841 tgtatatttt gcaagctgcc tataaagttc tttgaattga tctattggat attccctcag
     3901 atcagtgtct tttgctgcct gtaaagcaat ttctaaaatg aattttttct tcagcacata
     3961 gttttcattt gcatctaatt tgagtgagtc tttatttttt tcagatatgt tatacgtatc
     4021 aaatttagaa attttatcta attttgcata cacccaattg ttcatttttt gaatctttcc
     4081 cttattgctt catagtgatt cgttaaccct tcagccattg aaatttgttt aactattggc
     4141 tccactttct tcaaaccttg tttggttgct tgaatagtat ttacaatctt tacaaaatca
     4201 agtactgaaa gcgaagccct tgatttacta aaccctgatg ttggcaaaac atggttagaa
     4261 cccaagcaat aatcactggc tgaagatgga gtatattttc caattagcac taagcctgca
     4321 gatattatat tctttgaaat ggttcttgca ttagttgcaa ttatttctag atgttccggg
     4381 gctagttcat ttataaattc tactgcagca gattcgtttt tacataccgc tatgaatcca
     4441 ttctcttcta aacttctctt tactatgtca gcacgtttga tggtactctt ttcaagaata
     4501 gattgaagcg tatctgtcac ctgtactgca aattccttac ttgttgtaac caggccgcat
     4561 aaagtatcat aactgtgttc cgattgtgag attaagtcaa aagcaattag ttttggatca
     4621 gctttggaat ctgcatatat caatagttct gtaggaccag cgatcatatc tattgaaacc
     4681 ttactagaag caaggatttt ggcgatcgta acaaatattc ctcctgggcc tacgatcttg
     4741 cttactttgc taatggtagg agttccaaag gccaatgcca taattccatg agcaccgcct
     4801 accttataga attcatcgac atcacaaata tctgcggcaa caagagttag gggatcaact
     4861 gttccatctc ttaatggggg cgataatgct actactctct ttactccagc aacttttgca
     4921 gggatggcac acattaccat agtgcttggg tatcgtgctt ttccaccagg aatatagcat
     4981 ccaacactgg aaactggtct aacaatacgt tgaactctta ctccacgcga cgacattaca
     5041 attccacgaa gacgcttcaa aagcaccttt tcacccatga tcaatcgctc cttcattatt
     5101 ttgatagagt gaacttgctc tgttgtaact ttgttgtagg ctttcttgat ctcttcatct
     5161 gtaactttta atgaatttaa tcgtacaccg tcaaattttt ccgtataatc aaaaagagca
     5221 gaatcaccat attttgctac gtcatccatt atcaatttcg tcttttgaaa taaatcgtca
     5281 gagatactgc taatagaatt gcgtaatttc gcagcatccg atctggggtc aataatgata
     5341 attgtcttta tcaagaatac tcatcatcta tatttagatc atctagtggc aaaatctgcc
     5401 ttgtctccat tacaactaga ccttgagcca tcttcctcat cattggaact attttaataa
     5461 attcgttctt gtcaataact gtattgactc cataccaccc tttctcactt aatggactaa
     5521 tggttggtct tttcaatgca ggcatgtttt tcagcaagtt atcaaggttt ctttcctcta
     5581 cattgacaaa aatatgaagc tttttccgtc cttcgactac cccctttagt aatgcaacca
     5641 tatctgcaat tttctctttc ttttttgcat ctttgagagc atttttattt gcgagaagaa
     5701 ctgcagtaga ttccattact gtatcaatta ttttgaggtt attttgtcct aaagttgtac
     5761 cagtttcggt aatatcaaaa attgcatcaa catcttctgg tggttttgct tcggtagctc
     5821 caaaggagag atatatctgc acatttttgt tttctccaac tcttaaccaa ggagtaatga
     5881 tcataggatt agtatctcca aagtacttct tataagcatg gtttgatttg atatgagaag
     5941 cagtagtggt gagatattct gaagataacc taagaggttt gttttttttt gcaaagtcta
     6001 tgatcaaact tgtcaggtca ttagcttcaa aattctctgg gatcgctatt acttgtttta
     6061 cccttccgta ttctaagtca agcaatgttc ggacatcggc attagcctct ctgatccagt
     6121 ctttgccggt gattccaaca tcatagaatc cttcctgtac ataagttgga atttcctgtg
     6181 gtcttaagat tttgacctct atttcaggat cgctgagtct tatcctatat gtacgtctct
     6241 tgccactaat gctttgccag gcctcttcaa gaatcctgaa tgtggcctct tcaatactac
     6301 cctttggaac tgcaaatttc actgtaggca tatggataat tgagcacatc tgctatagga
     6361 tatatattta taggaatagt tagttagcta tacttgccca gtatagaata aattttaatt
     6421 cagttgttag gtagtttaaa accatcaaga gtaccttttt cgatacagtt gcatgtattt
     6481 acaaaaagtc tttaagcaag ccttttctgg cttagaatta tcatcatgac ttaaaagatt
     6541 attccttgaa ccagcagctt ttatatttat atgattagca gaacaaagaa tttgcatgct
     6601 gaccatattt attcaaaatt taattttcaa gaattcgtaa tgaaatgtgg tttttactat
     6661 ttcaacttag ttcctgtctg ttcaagttaa ttggctattc taatggaaaa gtgtaacaag
     6721 gtatcgcaca ctatgtgatg gtttcttaat aagatttagg taaatttttt tctattcttg
     6781 tttatcttca tcaacaatgc caaaatttcc tttgcgcggg ttatgtttat attattttct
     6841 tcagtaattc tctttgcaac cctgtcaact agatcacttt tagctccagc catgaccgca
     6901 acgtttcttg cgtggagttt catatgacct ttttgtatgc cttctgaagc taaagctcta
     6961 attgcagcta aattttgcgc aagaccaatc gcagatagta tcattgcaag ctcattagaa
     7021 gttttaacac ctaaaatttt taatgccacc ttcgctacag gatgaactga tactaccccg
     7081 cctacaattc caacggccat
//
LOCUS       DASQSJ010000281         3834 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_192361, whole genome shotgun sequence.
ACCESSION   DASQSJ010000281 DASQSJ010000000
VERSION     DASQSJ010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3834
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192361"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VE223_05505"
     CDS             complement(<1..224)
                     /locus_tag="VE223_05505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21080.1"
                     /translation="MNKTKNSSMLQMMFIVSLVAANVLLGLGGFKAANAQQSAGDTTQ
                     FKRILNDCNTVINAHTPDVNKLQSCDQKISS"
     gene            complement(217..672)
                     /locus_tag="VE223_05510"
     CDS             complement(217..672)
                     /locus_tag="VE223_05510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21081.1"
                     /translation="MFELTEYANGQRRRRQQQQQTLELQRLRIEYEKMYAVYKTILPK
                     VKRALITDLLSRQENYSTDGKDAPMYTIEVFTKKGIDSEEAKMYIIHKTGMVPSIYDY
                     GTHYVTNQRLTLEILKEISDCDDVLEITGEYSGSCASIGSVHERSEKDE"
     gene            815..1132
                     /locus_tag="VE223_05515"
     CDS             815..1132
                     /locus_tag="VE223_05515"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC21082.1"
                     /translation="MNNAITSQANNQIITTIVNKRSKKRLLIIDDEPDITLTFKISLE
                     STGLFEVYTFNEPLKALANFKAHFYDLVLTDIKMSKMTGCEFSQKIRETDNDAKICFF
                     DSF"
     gene            complement(1264..1638)
                     /locus_tag="VE223_05520"
     CDS             complement(1264..1638)
                     /locus_tag="VE223_05520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21083.1"
                     /translation="MMLTQSDGSFLFSMSGLTLILLFMSLVVFGWLAIRYRNIRSFEF
                     QISIFITSYVVGEIMEDYRMPFLSAFPYIGSQIHIASAVLLAMILWLRLYSARKGGRS
                     MLDKVEPVEEGGISGGSNDSNV"
     gene            complement(1635..1952)
                     /locus_tag="VE223_05525"
     CDS             complement(1635..1952)
                     /locus_tag="VE223_05525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21084.1"
                     /translation="MISTQTEIQIIQAIVYLIAAAIPIYLTHILKKRDDGSNNHHFKL
                     LTTILAGFVLMQGFYHIVGALGFSLLAKGVLEPLSFGILLLFGSIYFVNRSKAKKEEV
                     RVQ"
     gene            complement(1956..2108)
                     /locus_tag="VE223_05530"
     CDS             complement(1956..2108)
                     /locus_tag="VE223_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21085.1"
                     /translation="MMLPSYGNKHGDKFQMRIPSLDSKSGIEQPTFISSCYYNNQCIL
                     ENGAAA"
     gene            2122..2793
                     /locus_tag="VE223_05535"
     CDS             2122..2793
                     /locus_tag="VE223_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21086.1"
                     /translation="MNNKKITKTMMKRPSTRTTRTTITSTTIIAIVASAAVILGIPQP
                     QNQISHNALAQSYGSIGMTAAANSAVSVNPNQSTNKEFWINTVHLDGMTNLNAAKFCD
                     TCSQNTPLHPAEKPPVNSTIPTGGGFRITEPNKVGAWDFRSFTFSPAQIVVNQGDKVT
                     LHFVGVQGVHHIITVDGVGSFTLLRGQIHTVSFTANNPGTINYYCHIHMPNMVGQILV
                     LNKSV"
     gene            complement(2921..>3834)
                     /locus_tag="VE223_05540"
     CDS             complement(2921..>3834)
                     /locus_tag="VE223_05540"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZC21087.1"
                     /translation="KIPETMKLGAPVLRVRNIDTVLAFYENNLGLQVNKRYQSNEDGG
                     GSGNLIYELDFKQRESSTQEPLLILNHDPDATIPSSHSAGLFHFAILVPDRKSLASTY
                     LALKNSGVRYDGFADHLVSESLYLRDPENNGIEIYRDRPAIEWPHDSEGHIMMDTLPL
                     DLNSLSAEMNTMENGRKNNAKTFPAGARIGHIHLRVTNLERSIKFYHQKIGLDITLNC
                     SSMGAAFLSAGGYHHHIGMNTWLSLNGKSHTSREAGLENFTINIPDKSIVGALVSNIH
                     DTNYAQENENQLFIPDPDGITFLIRSQ"
BASE COUNT         1220 a          754 c          668 g         1192 t
ORIGIN      
        1 gacgaaattt tctgatcaca actttgcaac ttattaacat ctggagtatg agcatttatc
       61 actgtattac agtcatttaa gattcttttg aattgcgttg tgtccccagc tgattgttgg
      121 gcattagccg ccttaaaacc acccagcccc aataatacat tagcagcaac aagagagaca
      181 atgaacatca tttgtagcat agatgaattt tttgttttat tcatctttct cactacgctc
      241 atgtaccgac cctatggaag cacagctacc agaatattca cctgtaattt ccaagacatc
      301 atcgcaatca gagatttcct tgagtatctc taacgttagc ctttgatttg tcacataatg
      361 agtaccataa tcatatatag atggcaccat tcctgtctta tgaattatat acattttggc
      421 ttcctctgag tctattccct tttttgtaaa tacctctatc gtatacattg gtgcatcttt
      481 gccgtcagta ctgtaatttt cctggcggga aagcagatca gtaatgagtg ctcgttttac
      541 cttaggaagg atggtcttat ataccgcata cattttctca tattctattc ttagtcgttg
      601 taattccagt gtttgttgtt gttgttgtct tcgtcgtcgt tgtccgtttg catattctgt
      661 tagttcaaac atatttgttt tctgttatga tattacttta tcatattttt aaaaataggg
      721 acaaattcca tttgtggatt ccaattttgg aatccatact cggaattcgt ggttgttttt
      781 aatagcttaa taaaactaac gtatatcata agcaatgaat aatgcaataa cttcacaagc
      841 taacaatcaa atcattacaa caatagtaaa caagcgtagt aaaaaaagac ttttgattat
      901 agatgatgaa cctgatatta ccttgacttt caagatatct ttagagagta ctggattatt
      961 tgaggtttat acattcaatg aacctttaaa agcattagca aatttcaaag ctcatttcta
     1021 tgatctagta cttactgata ttaaaatgtc aaaaatgact ggatgtgaat ttagccaaaa
     1081 gataagagag actgataatg atgccaagat ttgttttttt gacagtttct gaggattatt
     1141 ggccagactg cattataaag aaccaatcgc aataggcgat ttggtaagca aatgaaatca
     1201 aattcaaaga ggctcgctgt tgagaataac aaacctaatt ggattttgaa attgccctta
     1261 ttgttataca ttactatcat tactaccacc actaatgccg ccttcttcta ctggctctac
     1321 cttatcaagc atgcttctgc cgccctttcg cgcagagtat aatcttagcc ataatatcat
     1381 ggctaaaagt accgctgatg ctatgtgaat ttgcgatcca atataaggaa aagctgaaag
     1441 aaaaggcatt ctataatcct ccattatttc tccaacaaca taagacgtga tgaatattga
     1501 tatttgaaat tcaaagctcc taatatttct atatcgaata gcaagccatc caaatacaac
     1561 caatgacatg aagagaagga tcaatgtcaa tccactcatg gaaaacaaga aactaccatc
     1621 gctttgagtt agcatcattg taccctaact tcctcctttt ttgctttaga tctatttaca
     1681 aaataaatag atccaaataa aagtagtatc ccaaatgaaa ggggctctag tactcctttc
     1741 gccaataggc taaaaccgag cgctcccaca atatggtaaa agccttgcat taaaacaaaa
     1801 cctgcaagta ttgttgttag tagtttaaaa tggtgattat tactaccatc atctcttttc
     1861 ttcaatatat gagtgagata gataggaatg gctgcggcga ttaaatacac gatagcttga
     1921 ataatctgta tttcagtctg tgttgatatc aattattatg ctgctgctcc attttctaaa
     1981 atacactggt tgttgtagta acagcttgat ataaaagtag gctgctcaat tccacttttg
     2041 gaatccaaag atggaatccg catttggaat ttgtctccat gcttattacc ataagaaggt
     2101 aacatcattc ttagaacaaa aatgaataac aaaaaaataa caaaaacaat gatgaaaaga
     2161 ccctcaacaa gaacaacaag aacaacaata acttcaacaa ctatcatagc aatagttgca
     2221 tctgctgctg taattcttgg aataccacag ccacagaacc aaatttcgca caacgcatta
     2281 gcacaaagtt atgggagtat tggaatgaca gcagcagcaa actctgctgt atcagttaac
     2341 ccaaaccaat cgaccaacaa ggaattctgg ataaatacag tacatcttga tggaatgaca
     2401 aacttaaatg cagccaaatt ctgtgatacc tgcagccaga acactccact gcatccagca
     2461 gagaaacctc ctgtaaactc tactatacca actggaggag gattcaggat tacagaacca
     2521 aataaagtag gagcatggga ctttagatca tttacattct ctccagccca gatagtcgtt
     2581 aaccaaggcg ataaagtcac tctccatttt gtaggagtac aaggcgtaca tcatatcata
     2641 actgtcgacg gagttggaag ctttacactt ctgagaggac aaatccacac agtatcattc
     2701 acagcaaaca accctggaac cataaattac tactgccaca tacacatgcc aaacatggtt
     2761 ggccagatat tggtgctaaa caagtcagta tgaatatgat attggcaaca ctactgaata
     2821 tcatcgtatg ctaaatagca gaagaggtac tattgatagc atacttcaaa tatttttgat
     2881 taaataagag gagcaggaag agtaaccaaa cgccgaaact ttattgtgat cgaatcagga
     2941 acgttatacc atctggatct ggaatgaaca attgattctc gttttcctgt gcgtaattag
     3001 tgtcgtgaat attcgaaaca agcgccccga caattgattt gtctgggatg tttattgtaa
     3061 agttttctaa tcctgcctca cgactcgtat gactttttcc atttaaacta agccaggtat
     3121 tcattccaat atgatggtgg tatccgcctg cagaaaggaa agccgcaccc atcgagctac
     3181 aattcaatgt tatgtccaga ccaatcttct gatgataaaa ctttattgac ctttcgaggt
     3241 ttgtaactct gagatgtata tgtcctatcc ttgctccagc aggaaatgtt tttgcattat
     3301 tttttctccc attctccata gtgttcattt cagccgacaa agaattcaga tccaatggaa
     3361 gtgtgtccat cataatatgt ccctcagagt catgaggcca ttcaatggct ggtctatctc
     3421 ggtaaatctc tatgccatta ttttcaggat ctcggaggta taatgactca ctgactaggt
     3481 ggtcggcaaa gccgtcgtag cgcactcctg agtttttaag ggctaggtag gtagatgcaa
     3541 gactttttct atcaggaaca agtatcgcaa aatgaaagag tcctgctgaa tgcgatgaag
     3601 gtattgttgc atcgggatca tgatttagta tgagaagtgg ctcttgggtt gatgattccc
     3661 tttgtttgaa atcaagttca tagattaggt taccactacc accaccatct tcgttacttt
     3721 gatatctttt atttacttgc aatccaaggt tgttttcata gaatgctaga actgtgtcaa
     3781 tatttctaac ccttaatact ggagcgccaa gcttcatggt ttcaggtatc ttaa
//
LOCUS       DASQSJ010000282         3479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_192588, whole genome shotgun sequence.
ACCESSION   DASQSJ010000282 DASQSJ010000000
VERSION     DASQSJ010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192588"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(383..817)
                     /locus_tag="VE223_05545"
     CDS             complement(383..817)
                     /locus_tag="VE223_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21088.1"
                     /translation="MVSSLHIKNLLHRKIPFRLIIPLITAAMMLVVIIIDSFFTSFPA
                     ITFAWVLVGIVIGFPFGRLTKISWNSDKTQLVLDGSGMALLVAYIVTSIIRSIILRME
                     FGYLSYVLAITLLASVGGAIGRTLGMMKQIQLAVKSNRPSSG"
     gene            973..1263
                     /locus_tag="VE223_05550"
     CDS             973..1263
                     /locus_tag="VE223_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21089.1"
                     /translation="MTSFEQIANAATTSSTTTKSSTTTSPNGNNINCQSKTGTANTQT
                     NLGTLKLGGAKCTGENGGTATVGGIKSNSGAIGMHGIKGPNGNSHFGGFIKR"
     gene            complement(1936..2763)
                     /locus_tag="VE223_05555"
     CDS             complement(1936..2763)
                     /locus_tag="VE223_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HZC21090.1"
                     /translation="MQTNYAIFKARPNIFLSFFFSNPEMKTLPFIIVTLFSGAIAGIV
                     LGLINQAIVEPFIDKAISIETQRQIARGESVDTTQQSQYRMWQKGGEVVAALIYGISL
                     SALFGIVFVYSRRSLPSFNNKRKALFLAAIMFFVVFLIPSLKYPANPPAVGNPSTIYY
                     REMLYVGFIAVSGFSALALALSYKGLQRYFPEKPTRLIVPLIYAVIMISAYIAFPSNP
                     DKVTIPADLIISFRIGSVFTIGIFWGVLGIIVGFFWDKFKLHETNRIAPSSSDAFVS"
     gene            complement(2791..3024)
                     /locus_tag="VE223_05560"
     CDS             complement(2791..3024)
                     /locus_tag="VE223_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21091.1"
                     /translation="MSVIIKQVAKESSDIPKLAIGILAAILVLSMFIVGYDQGQLVQA
                     LAVPMGIHLNHDQVMLIHEFNHDLRHAAGFPCH"
     gene            3171..>3479
                     /locus_tag="VE223_05565"
     CDS             3171..>3479
                     /locus_tag="VE223_05565"
                     /inference="COORDINATES: protein motif:HMM:NF044549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21092.1"
                     /translation="MHTYVKALTKIASRYAPSRMLSFELVHIFKAFQLLDKSEHVSRT
                     LLCHELALGEGSVRTLLKHLKMQNLVRSTNGGTWLTEKGKALSSELLHSIPSETIMPK
                     C"
BASE COUNT         1141 a          655 c          629 g         1054 t
ORIGIN      
        1 tagggcagca gcctttgaac atcgtattgc tgcgtgcata ctaaatgact gtgtttatga
       61 tggctatgat gccaatgcat caagttttcc caaatcgtta ctaacggcga atatttgatt
      121 ggctagataa aacgctcaac aatgtataag caatgatcac tattatactg acaacccatc
      181 atatagaaga agctgatatg ttatgcattt tgagaaatgc cttttggtct tggtaaaaaa
      241 ggtgaagagc aacaaccatt gttacaaaca taacagacaa agaagaccta agggaaatca
      301 aaaaaatagc tcatatgcta aaccccaacg aggaagtatt tgctgttgca gaactgcgat
      361 acgcaataca acaatactaa ctctagcctg aggatggcct gttagactta actgccagct
      421 gaatttgttt catcattcca agtgtcctcc caatcgcacc tccaactgag gcaagcaatg
      481 taatagctaa gacataggac aagtagccaa attccatgcg aaggattatg ctcctgataa
      541 tgctggttac aatatatgcc acaaggagtg ccatacccga tccatccaag acaagctggg
      601 tcttatcgga attccatgaa atctttgtta aacgtccaaa tggaaaacca ataacgattc
      661 caacaagaac ccatgcaaaa gtaattgcag gaaacgatgt aaaaaatgaa tcaataataa
      721 taacaacaag catcattgca gcggttatca atggaattat cagtctgaaa ggtatctttc
      781 tatggagtag atttttgata tgcagggatg ataccaatta atatctagat atgatgatca
      841 atcatacctt tgctctcaaa tccagtcagt tgaatttata tacatatctc aatgcatcgt
      901 gcatacatgg attcgaaaac tctcattctg accatactaa tagtatcaac aatctgcgtt
      961 gtactggtga caatgacatc atttgagcaa atagcaaatg ctgcaacaac atcatcaaca
     1021 acaacaaaaa gtagcactac aacaagtcca aatggaaata acataaactg tcaatcaaag
     1081 acaggaactg caaatactca aacaaaccta ggtacattaa agcttggagg tgcaaagtgt
     1141 acgggtgaaa atggtggaac tgcgacagta ggtggaatca aatctaattc aggagctata
     1201 ggaatgcatg ggattaaagg acctaatggt aattctcatt tcgggggatt tattaaaaga
     1261 taaataactg acaaattctt tttttatgtt tatgcttcta aggtagtcat tccaagtagt
     1321 tatctatctt ttatcaggat ctttgagctt ttgatcttcg tatcaagaaa tgaaataatt
     1381 tgatctttct tagtcatttc atataaagtc gtatcgtttc ctagccattt tgcaaaacta
     1441 atacctcctt tattgctctt gttgtcatta ctatgttaga tatagcatat ttttccaata
     1501 gttgtatatg agccagagta gttagcgggc ccgtcgggat gcaaatgaaa attcaaccga
     1561 atccttttac atgattcttt atctaaaacc ctgatgttta aaagtactag tccttagcca
     1621 cttcgttatt tataagatct cagtttgtta tcgccataat ccctcttcca tgatagatct
     1681 taagatataa acaagacgta gttatcaaac ccttaaagat agagaccctc catatctttt
     1741 tcgataggag gattgactct atcttgtccc tggagtagag agtgagtgaa tgaatgaatg
     1801 agtaaatgaa taacacccgc gtataccgca atagtttggc ttttactgtt tgctaaggtt
     1861 tacttctttg tttagaggga aatcatgttc attgttaatt caggataacg gtaacttctc
     1921 tgcaatatta tcaaactagc taacaaaagc gtcagaagac gatggggcaa ttctgtttgt
     1981 ttcatgtagc ttgaacttat cccagaagaa cccaacaata attcctaata ctccccaaaa
     2041 tataccaata gtgaatacag agccaattct aaagctaata atcaagtctg ctggaattgt
     2101 aactttgtca gggtttgatg gaaatgcaat atatgcacta atcattatta ctgcgtatat
     2161 taacggaact atcaaccgtg tgggcttctc tgggaagtat ctctgcaacc ccttatatga
     2221 taatgcaagt gccaaagcac taaatcctga aactgcaata aagccaacat acaacatctc
     2281 tctatagtat attgtagatg gatttcctac tgcaggtggg ttagccgggt atttcaatga
     2341 tgggattaga aatactacaa agaacattat agctgctaaa aacaatgctt ttcttttgtt
     2401 attaaagcta ggtagtgacc gtctgctgta tacaaaaact atcccaaata gtgctgataa
     2461 cgatatgcca taaattagtg ctgcaactac ttctcctcct ttttgccaca tacggtactg
     2521 agattgttgt gtggtatcaa cactctcccc tctagctatc tgccgctgcg tttctatgct
     2581 tatagcttta tcgataaatg gttctacaat agcctggtta attaagccaa gaacaatacc
     2641 tgcgatagct ccagagaaaa gagttacgat gataaaaggt agtgttttca tttcagggtt
     2701 agaaaaaaag aaagaaagaa agatgtttgg acgagcttta aatatcgcat agtttgtttg
     2761 cattaccttt gtttattttg ttttatttta ctagtggcat ggaaagcctg ctgcgtgtct
     2821 caaatcatga ttgaattcat gtattaacat tacctgatca tgattcaaat gaatgcccat
     2881 gggtacagct aatgcttgca ccagctggcc ctgatcgtat cctactatga acatgctaag
     2941 tactaaaatt gcagctagta ttcctatggc tagtttcggt atgtcactac tttccttagc
     3001 aacctgcttt attataaccg acatttgtga tctctatctt tcataatgtc attatatata
     3061 agagataggt tagtttatcc aactcttata ctcctctgtc taacgaatac aattaaatgc
     3121 aattggggct cttgtcatca tgctgtcata cacgctagtg caataaagat atgcatacat
     3181 atgttaaagc attaacaaaa attgcaagca gatatgctcc aagtagaatg ctttcttttg
     3241 aattagttca tatttttaag gcgtttcagc ttttggataa aagtgaacat gtgagtagga
     3301 cactgctctg ccacgaattg gctcttggtg aaggttctgt gagaacgctg ctcaaacact
     3361 taaagatgca gaatctagtt agatcgacaa acggcggaac ttggctgaca gaaaaaggaa
     3421 aagcactttc atcagaacta ttacattcaa tcccatctga aaccattatg cctaaatgt
//
LOCUS       DASQSJ010000283         2500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_34315, whole genome shotgun sequence.
ACCESSION   DASQSJ010000283 DASQSJ010000000
VERSION     DASQSJ010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34315"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..644
                     /locus_tag="VE223_05570"
     CDS             186..644
                     /locus_tag="VE223_05570"
                     /inference="COORDINATES: protein motif:HMM:NF015557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HZC21093.1"
                     /translation="MWTSMLVGAALMVGLQIISIQAAFKLINLDVMGFLFGIFRIVSA
                     LDKSGVLMLVSARMLSKTRNNTELILMIFVVGLGLGFLSAFLVNDTIALLGIPLVIYV
                     FKRISIRPSILPIALSFGTSVGSSMTPIGNPQNLLIGNSEWNTTTVYNVS"
     gene            720..902
                     /locus_tag="VE223_05575"
     CDS             720..902
                     /locus_tag="VE223_05575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21094.1"
                     /translation="MLLKTKTKIYSQSGTAGRKEQYILEENVISDADAKQYTAKIYRT
                     AHNAIIRICRVAFLKL"
     gene            1052..1528
                     /locus_tag="VE223_05580"
     CDS             1052..1528
                     /locus_tag="VE223_05580"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HZC21095.1"
                     /translation="MMSGALQLNCKSQISEESSSKEYCTWQQVEVLVEKLAHTIQSSG
                     KEYDVILAITNGGIIPAKLIARELNVNHIQFIPIRNKKLYIEEIHPLHKGRKYLIVDD
                     IYDTGDTFNKVYVVVKEFDCDFAFLMTRYKNSNAPLVAKVLNHEKWIVFPWERKRY"
     gene            1689..>2500
                     /locus_tag="VE223_05585"
     CDS             1689..>2500
                     /locus_tag="VE223_05585"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HZC21096.1"
                     /translation="MEHAANYEQKINTNTTVNSSDDLDFFSISDLKRRIDLATGQKKA
                     ELVVKNANLVNVFSGEIHRSDIAIADGIFVGCGPTEEYREYEAQNFIDAQGRFMCPGL
                     IDGHIHLESTFLPPREFCSIVALHGTSAVICDPHEIANVLGLPGIDYFLYSRLPVKVY
                     VMMPSCVPATHMETSGAVILDKDIRKYMDSNSSLVIGLAEMMNYPGVISKDYQTLSKL
                     IAAGSRPKDGHAPLLSGKSLDAYIIAGLGSDHECTNLKEAIEKIRKGMHIMIR"
BASE COUNT          823 a          404 c          484 g          789 t
ORIGIN      
        1 atttgatgag tagcttcgca gcacatatct ctaatgcgct acaagaagaa gaacgaataa
       61 agcatattag atgaaatctt ccaataatgc agcagcaaca agagcaatcc attattattg
      121 caatagccat ttttgcagta gtctattttc tcatcgtatt tggaagaaga tgatttaata
      181 ttccaatatg gacttctatg ctggttggtg ctgcacttat ggttggtctt caaatcataa
      241 gcatacaagc tgcattcaaa ttaatcaatt tagatgttat gggatttctt tttggcatat
      301 tccgtattgt ttctgcactt gataagtctg gagtgctcat gctagtatca gcaaggatgt
      361 tatcaaaaac aagaaacaat acagagttga tactaatgat atttgtagta ggtttgggtt
      421 tgggttttct ttctgcattt ttggtgaatg ataccattgc attgcttgga atcccacttg
      481 ttatttacgt attcaaaaga attagtatta ggccttcaat tctgccgatt gctttatcat
      541 ttggaactag tgttggaagc tcgatgactc cgataggaaa tcctcaaaac ctgttgattg
      601 gcaattcaga gtggaatacc actaccgttt acaacgtttc ttagatttct tgacattcca
      661 actctagtta atttgtttgt aacatatttt attttgaaac tatcctacag aaaagaatta
      721 tgttgttaaa gacgaagacg aaaatctatt cacaaagcgg taccgctggt aggaaggaac
      781 agtatattct agaagaaaat gtcattagtg acgctgatgc taagcagtac actgcaaaaa
      841 tttatagaac tgcacataac gcaattattc ggatctgtag ggtggctttc cttaaacttt
      901 gataattccc gagagagtga gtgtacacga gatattcaaa tcactctcct atttccacgc
      961 ttttgcgagg atggatgctt caatgtttat tactaggaaa atttgccata tgattatttt
     1021 aggatcgtta ataaagtaat tattgaacaa aatgatgagt ggagcactac aattgaattg
     1081 taagtcacaa ataagcgaag agagctcgtc aaaagagtat tgtacatggc agcaagtaga
     1141 agtgctagta gagaagcttg cacatacaat acaaagctca ggtaaggaat atgatgtgat
     1201 cttggcgatt acaaatggag gcattattcc agctaaactg atcgcacgag aactaaatgt
     1261 caatcatata caattcatac cgataagaaa caaaaaattg tatatagaag aaatacaccc
     1321 cttacataaa ggcagaaaat atcttattgt cgatgatata tacgatactg gtgatacatt
     1381 taacaaagtc tatgtcgtag taaaagaatt tgactgtgac tttgcatttc ttatgactag
     1441 atacaaaaat agtaacgcac cactagttgc aaaggtatta aatcacgaga aatggattgt
     1501 atttccctgg gaaaggaaac gttactaacc atattctata ctatattgta tatgttctac
     1561 ttgtacctgg atagcttatc acaggataat tctttgtcag taccattacc attatattat
     1621 tattgtgaac ggaatgacta agaatgttta taatcttgga ttttggactt tgatattgca
     1681 tttattcaat ggaacatgct gcaaactacg aacaaaaaat caataccaat acaacggtta
     1741 attcatcgga tgatcttgat tttttttcga tatcggattt aaagagaaga attgatctgg
     1801 caacaggcca gaaaaaagct gagttagttg taaagaatgc aaatctagtc aatgtctttt
     1861 caggagagat acacaggagt gatattgcta ttgctgatgg aatatttgta ggctgtgggc
     1921 caactgaaga ataccgagaa tatgaagccc aaaattttat cgatgctcaa ggaagattta
     1981 tgtgtcctgg gcttatagat gggcatattc atttagaatc tacttttcta cctccaagag
     2041 aattttgtag catagtggca ttgcatggga cttcagctgt tatatgtgat cctcatgaaa
     2101 tagctaacgt acttggtcta ccaggtattg attattttct ttactcaaga ttacctgtca
     2161 aggtttacgt tatgatgccg tcctgtgtac ctgctacaca tatggaaaca tccggtgcag
     2221 taattcttga taaggatatc cgcaaataca tggattccaa ttctagtctt gttattggat
     2281 tagcagaaat gatgaattat ccaggagtca tatccaaaga ctatcagact ttatctaaat
     2341 tgatagcagc aggctcaaga cccaaagatg gacatgctcc actcctttca ggaaaatcat
     2401 tggatgcata tattattgct ggcttaggta gtgatcatga atgtacaaat cttaaagaag
     2461 cgatagaaaa gatacgtaag ggcatgcaca taatgatacg
//
LOCUS       DASQSJ010000284         6422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_472767, whole genome shotgun sequence.
ACCESSION   DASQSJ010000284 DASQSJ010000000
VERSION     DASQSJ010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6422
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_472767"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(198..602)
                     /locus_tag="VE223_05590"
     CDS             complement(198..602)
                     /locus_tag="VE223_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21097.1"
                     /translation="MKSLRKNDFRTLIVVLLFGFYGQFVIVNQSQPMIIYTLNASLSS
                     NNNNNTPSIIVSNSSNIPQPFQLSYKMLINESYSLTQSYQKEIGKWQSRQYDNKTMIL
                     ITDNYLPKFQKLVNRAASLQPTTYERVWSSIN"
     gene            1110..2111
                     /locus_tag="VE223_05595"
     CDS             1110..2111
                     /locus_tag="VE223_05595"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZC21098.1"
                     /translation="MVKFSILAAHEQVNPVDLLSDVLIMEQNEIERCWTSDHYMPWWH
                     TGASGGAAWPWLGAALAKTNKIIIGTGITPPILRYHPAIVAQVFATLGFMFPRRVFLT
                     VGRGESLNEVTSGSYWPSSFERFKRLKEAIHLIKKLWTEDWVTFRGEYYWVKDSNLYT
                     KPKNPIPLYIAGLGPQSARLAGQEGDGLVTNELDAEKIKNKLFPAFKEGARIAGKDYS
                     SLEKILFIPASYDEDKQKALESIGFWRGSMIKAFYDADIHDPRKIEENGQVVGYDVME
                     KMALVISNSEEGIMKLKKYVDLGFTEIVLTNSSPNREKFVKLLSKQIIPEFKGTGIQ"
     gene            2611..3090
                     /locus_tag="VE223_05600"
     CDS             2611..3090
                     /locus_tag="VE223_05600"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC21099.1"
                     /translation="MLSSNHERSQQQVQQQYKDHTQIDKAIKRILIISPEDDVNLALK
                     TALEQGEGKASGSYNFRVECFNNPVLAIRNFKSDFYDLLIVDVIMPQINGFDLTEEIK
                     KIDQNLRVCFLIAGEVPGKLRANQFRVEGEEGYEDKFIQIPIENNNLVRLVTVVIGS"
     gene            3538..3927
                     /locus_tag="VE223_05605"
     CDS             3538..3927
                     /locus_tag="VE223_05605"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HZC21100.1"
                     /translation="MNYNKLTPEEERVIVNKATEVPFTGKYDNFYEEGTFICRRCNAP
                     LYSSKSKFDAGCGWPSFDENFPNAVERVPDPDGIRTEIQCANCGGHLGHEFLGERITD
                     KNVRECVNSLSLRFIPKGEELPKTIHE"
     gene            3920..4471
                     /gene="msrA"
                     /locus_tag="VE223_05610"
     CDS             3920..4471
                     /gene="msrA"
                     /locus_tag="VE223_05610"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HZC21101.1"
                     /translation="MNDKTEIATIASGCFWCTEAIFKRLKGVKSVLSGYGGGTVKNPS
                     YDQVCTGKTGHAESVQIEFDPKVIPFKKILEIFWHTHNPTTLNRQGNDVGTQYRSVVF
                     YHDKTQKEIAERVKKEIEKNGVYKDPIVTEITPFKNFYVAEDYHKNYYEEHQDAPYCD
                     FVIDPKIRKLLQQYGDDVKDEYK"
     gene            4875..5342
                     /locus_tag="VE223_05615"
     CDS             4875..5342
                     /locus_tag="VE223_05615"
                     /inference="COORDINATES: protein motif:HMM:NF017704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21102.1"
                     /translation="MMQDIRVTYKRDLKVSLGSITIDAKEGDISSLPRWLAKLLADES
                     VIEIQDNDSSAYISRALNRERISKPHDLSGLDPDFYIRVHDYLEGLNEREKESIIVSL
                     LSFVTSRLEKIVKLAAASALSPELEAKLSVEEKELYLLIHSYSSEFKQKVLKI"
     gene            5339..>6422
                     /locus_tag="VE223_05620"
     CDS             5339..>6422
                     /locus_tag="VE223_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HZC21103.1"
                     /translation="MNEQQEEQTTSALANDLEKFLRAFKDRDRRYKFFDRINHMMVDN
                     SNSLVIDYIDLDTFNPGLAKRITHNPDEMLEAFNEAVLYILNEIHPDYAQEIRDKIKV
                     RIGNYTVQKGLRDINAEMIDKLIGVSGMVVRSSEVKPLAKKIGYRCLNCNTINEAQLK
                     GLILKKPLKCINCSEKELEMDPDNSIFTDFQLVRLQELPEDLPAGQLPHYIEVTVMGD
                     LVDRCRPGDRIMLTGIVRIEQEQIAPQVKTSLFRLRMEGNNIEYLGGIAGTKDTRTLE
                     RIAISTENEKQILAIANKSDAYDKLIASFAPHVYGHEVIKEAILLLIIGSITKKLDDG
                     STRRGDINILLVGDPGTAKSEMLKFAA"
BASE COUNT         2198 a         1046 c         1262 g         1916 t
ORIGIN      
        1 tctgataatg cgaggttatc ccttcggccc gatcggagag cattttccaa ttttaagaaa
       61 tggcaaagaa tagtttccat cccatgacgt ttgttgagcc ggaaacagtg tttgacgcaa
      121 atgtccaatc cggcacggta agaattttgc attccgtagg ttctgaagta actactacta
      181 actggagtgg tttcgtatta gttgatggag gaccataccc tttcataagt ggtgggctgc
      241 aaagatgccg ctctattaac taatttttga aattttggca aatagttatc ggtgatcaaa
      301 atcattgttt tgttatcata ttgtcttgat tgccatttgc ctatctcttt ttgataactc
      361 tgagttaggg aatatgattc gttaataagc atcttataag aaagttggaa gggttgaggt
      421 atattgctac tattgctgac gattatgcta ggggtgttat tgttattgtt actggataaa
      481 gatgcattta acgtgtatat tatcattggt tgtgattgat taacaataac aaattggcca
      541 taaaagccaa acagtaacac cacgatcaaa gttctaaaat cattttttct cagacttttc
      601 aaatttatct tatcgcttac tctaataaat aaaacttact cacaagtgca agcgttcttc
      661 tttcagcagt attagcgctg tctgtattag ccaaagctga ttttggccct tctgcatttg
      721 cacatataat aacacccaag gtgacatagc attcttctaa ggttgtattt tttagataaa
      781 attgcaaatg tcctatcttt cttgtgacat gttgaataga attatgagaa gttggacggt
      841 atattagacg ttgctaatat ccttgcatta tttgatatta ctgtatgcta atacatcgtg
      901 tgttacaaga tgttgaatta aaaaataata tatagtagca gtatgtagat aattgctaat
      961 tctcatgttg ttattgctat tataaccact gaaagacaac cagaattaat agatcagctt
     1021 tttcaatcct aactaaaaca gctgcaaaaa caggttcatg agttcagaaa aaggtaaaat
     1081 aagcgaagag gaagttttga tcttaaaata tggtaaaatt cagtattttg gctgcccatg
     1141 agcaggtaaa tcctgttgat ttattaagtg acgtcctcat aatggagcaa aacgaaatag
     1201 agagatgctg gactagtgat cactatatgc catggtggca tactggagct tctggtggtg
     1261 ccgcttggcc gtggcttggc gctgctctag caaagaccaa caaaataatc ataggtactg
     1321 gtataacgcc tccaatactg aggtaccatc cagccatcgt tgcacaggta tttgctacgc
     1381 taggctttat gtttccaaga agagtattcc ttactgtagg gagaggagaa tctcttaacg
     1441 aagtaacttc cggcagttac tggccttcta gttttgagag atttaaaaga ctaaaagaag
     1501 caatacattt aatcaaaaaa ctctggacag aggattgggt tacgttcaga ggagagtact
     1561 attgggtaaa agattctaac ctctatacca agcctaaaaa tccaattcca ctgtatattg
     1621 ctggcttagg cccacagtca gctagattag caggccaaga aggggatggc ttggttacaa
     1681 atgagcttga tgctgaaaaa atcaaaaata agttatttcc tgcctttaaa gagggagcta
     1741 gaatagcagg caaagattat agctcgttag aaaagatttt atttattcct gcatcttacg
     1801 atgaagacaa gcaaaaagct ctagagtcaa ttggtttttg gagaggatct atgataaaag
     1861 cattctacga tgcagatata catgatccaa gaaaaataga agagaatggc caagttgttg
     1921 gttatgatgt aatggagaaa atggcgcttg taatatcaaa ttcagaagaa ggaataatga
     1981 aacttaaaaa gtatgtggat ttagggttta cagaaatcgt tctaacaaat tcaagtccta
     2041 atcgtgaaaa gtttgtaaag ttactatcta aacagataat tccggaattt aagggcacag
     2101 gtatacaata gtagtgctag tggtatgata atagataatt aactaaacag attgatactc
     2161 cactattttt gcaaatacag gagtgaaatg ctgctattgt tatgttatcc aatgtcaaac
     2221 ttgattgaaa tcacagaata cttttcttaa agttggtctc ttagatcgcc cgtattcatt
     2281 attgcaccag gtgtatgtat tgcttcgttt cgtttcgtct taaatggcca actaagtcac
     2341 tgtcgtctat tatggctcca aaattagcta tatcggattt taaattttta accatagaaa
     2401 tgttggttgg ggcaaccgct cttggcattt gcataggtct acagccacct tgaatgctgg
     2461 taagtattgt tcacatattg tcaaataaat cacggagtca aaatcattca tgccatcaaa
     2521 aaaaagcaca cattgactat aagcagcaaa tcagagaaat aagagattta gtttaccaga
     2581 gtaaataact agccgtctct actacagact gtgcttagca gcaatcatga acgaagtcaa
     2641 caacaagtgc agcagcaata taaggaccat acacagatag acaaagcaat aaaaagaatc
     2701 ttaataataa gccctgagga tgatgttaat ttagcattaa agactgcttt agaacaggga
     2761 gagggaaaag ctagtggcag ttataatttc agagttgaat gttttaacaa tcctgtttta
     2821 gcaataagaa atttcaaaag tgatttttat gacttgctta ttgtcgacgt tataatgcct
     2881 caaataaatg gttttgattt aactgaagaa atcaaaaaga tagatcaaaa tctaagagtt
     2941 tgtttcctaa tagctggtga agttccagga aaacttagag ctaatcaatt tagagtggaa
     3001 ggagaagaag gatatgaaga caagtttata caaataccta ttgaaaataa caatcttgtt
     3061 aggctggtaa ctgttgtaat aggttcataa attgataatg tattttgtat tgtgttatta
     3121 tagaattata aaaattgtta ccactaattc tacctatctg agaccagatt gtcatggcat
     3181 ggtttatcgc cagcatcaag ataaaagtcc atgtgaagca caagaattaa ttaaaatatt
     3241 catacatcaa tataacatac atataataaa actttcatac taagctgagg gcaagtagga
     3301 gtttttgtat ctgtttttgt gtttgttgtt tcctgcattc tatcttatat gtatcccata
     3361 tatgacgtga tataataagt ggttttgatt tcatattatt tgtatcatga taaagctaag
     3421 cagatccagg aggatgtcgt ttctagtttg tatttcactt actttactaa aacatataaa
     3481 taaataaaat gaaaaatacc atatagaagg cttcgagatc aggtgaggca cttaagtatg
     3541 aattataata aactaacacc agaagaagaa agagtcattg taaataaagc aacggaagtt
     3601 ccgttcacag gcaaatatga taatttttac gaggaaggaa catttatctg tcgtaggtgt
     3661 aatgcgcccc tctattcatc gaaaagtaag tttgacgcag ggtgtggatg gccgagtttt
     3721 gatgagaact ttccaaacgc agtagaacgc gtgcctgatc ctgatggaat aagaacggaa
     3781 atacaatgtg caaactgtgg tggacattta ggacatgaat ttctcggaga acgtataaca
     3841 gataaaaatg ttcgagaatg tgtcaactca ttatcattac gttttatacc aaagggagag
     3901 gagctgccaa aaaccataca tgaatgacaa gacagaaatt gcaacgattg caagtggatg
     3961 tttttggtgt acggaagcaa tcttcaaaag actcaaaggt gtgaaatcag tcttatcagg
     4021 ctatggagga ggaacagtga aaaatccttc ctatgaccaa gtatgcactg gaaaaacagg
     4081 acatgcagaa tcagttcaga tagaatttga tccgaaggtt atacctttta aaaaaattct
     4141 cgagattttt tggcatacac ataatccaac cacccttaat agacaaggta atgatgtagg
     4201 cacacaatac cgatctgtag ttttttacca tgacaaaacg caaaaggaga ttgctgagag
     4261 agtaaaaaaa gaaattgaaa aaaatggtgt ttacaaagat cctattgtga cagaaattac
     4321 cccttttaaa aatttttatg ttgcagaaga ctatcacaaa aattactatg aagaacatca
     4381 agatgcgcca tattgtgatt ttgtcatcga tccgaaaatc cgcaaactgc ttcagcaata
     4441 tggagatgat gtaaaagacg aatataaata aacggcgaca tggtatgcat tatattggta
     4501 atggttctac gtccttctac caacattcag tttccataaa ttgagtcatt aatccaatat
     4561 tttatcaaat ggcagttatg taggattatc ctctacataa tactattcgc gattttaatc
     4621 taaaagttgg tattctatta atatttctaa aatttttacg atagcagtaa gtaactattg
     4681 acgcaaagca taagttttac atctagaaga ttacaagtca taaaatatct agagttattt
     4741 attatatttc cttaactatc tcatttagat taacaaaaga tataattgtt tgggatccat
     4801 gatatcatat attaatcaca atgacttcac gccacaagat agaaactatt cagagcgcat
     4861 accattttga atacatgatg caagatatcc gtgtaacata caagcgtgac ttaaaggtat
     4921 cattgggaag cataacaatt gatgccaaag aaggtgacat atcatctctt ccacgctggc
     4981 tggcaaaact tttggctgat gaaagtgtca ttgaaattca agataatgat agttcagcat
     5041 acatttcaag ggctttgaat cgtgagagaa tatcaaaacc tcatgatctg tctgggttag
     5101 atcctgattt ttatattcga gttcatgact atttagaagg attgaatgaa agggaaaagg
     5161 agagcatcat agtttctcta ctttcgtttg tgacatctcg ccttgagaag attgtaaaat
     5221 tggcggctgc ttcagctctt tcgccagaat tggaagcaaa actctcagtt gaagaaaaag
     5281 aactttatct gttgatccat agttattctt cagagttcaa acaaaaggtg ctaaagatat
     5341 gaatgagcag caggaggagc aaaccacatc agcattagcc aacgacctcg aaaagttttt
     5401 gcgtgcattc aaggatagag atcgaaggta caaatttttt gacagaatta atcacatgat
     5461 ggtagataat tctaattcac ttgtaataga ttatatcgat cttgatacct tcaatccagg
     5521 cctcgccaag cgaattactc acaatccgga tgagatgtta gaggctttta acgaggcagt
     5581 attatatatt ttaaacgaaa ttcatccgga ctatgcacag gagatccgcg acaaaatcaa
     5641 agtcaggatc ggaaattaca ccgtacaaaa gggcttgcgc gatatcaatg cagagatgat
     5701 cgacaagcta ataggagttt ctggcatggt agtcagatca tctgaagtaa aaccacttgc
     5761 taagaaaata ggatatcgct gcctcaactg taacaccatt aatgaggcgc agctcaaagg
     5821 actgattttg aaaaaaccct tgaaatgtat aaattgttcc gaaaaggagc ttgaaatgga
     5881 tccagacaat agcattttca cagactttca attggtgagg cttcaagaac tgccagaaga
     5941 tctaccagct ggtcagcttc cacattatat agaagtcaca gtaatgggag atttagtaga
     6001 ccgatgccgt ccgggcgata ggatcatgtt aactggaata gtaagaatag agcaagaaca
     6061 aatcgctcca caagtcaaaa ccagcctttt cagactgcga atggaaggaa ataatattga
     6121 atatcttggt ggaattgcag gcactaaaga tactcgaact ctcgaaagaa tagctattag
     6181 cactgaaaat gaaaaacaga ttctggctat tgcaaacaag tctgatgcgt atgacaagct
     6241 gattgcttct tttgctcctc atgtctatgg ccatgaagta attaaggaag caattctgtt
     6301 attgattata ggttcaataa caaaaaaact ggatgacggt tctacccgtc gaggcgacat
     6361 taatatactt ttggttggcg acccaggtac tgccaaatca gaaatgctaa aatttgctgc
     6421 ta
//
LOCUS       DASQSJ010000285         2145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_574182, whole genome shotgun sequence.
ACCESSION   DASQSJ010000285 DASQSJ010000000
VERSION     DASQSJ010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574182"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VE223_05625"
     CDS             <1..550
                     /locus_tag="VE223_05625"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HZC21104.1"
                     /translation="INPLILNRWSPRSMTGEELSDNDMMSLFEAARWAPSSSNNQPWR
                     FIYAKRNTEKWDKLFNLMFEGNKIWTKNAAVLVVVISRKNSEQNEKPSKTYQYEAGSA
                     WENLALEAATRGLVAHGMAGFDYEKARKDLDIPDNFDVMAMIAIGKMGTKESLPLALQ
                     EKEHPNDRKPLAEIIMEGQFRK"
     gene            833..1150
                     /locus_tag="VE223_05630"
     CDS             833..1150
                     /locus_tag="VE223_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21105.1"
                     /translation="MSKTMYYFLVSIVFTTTVAILVIAIAHFDVVVAQSNNNNNKQAG
                     GSSSNQSRATSLSTQGQGIPGAQTNANPLAQAPITGIKVKPPNNTSNVSPLQKTNMTG
                     AFP"
     gene            complement(1305..1511)
                     /locus_tag="VE223_05635"
     CDS             complement(1305..1511)
                     /locus_tag="VE223_05635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21106.1"
                     /translation="MMKNKGFNNNNNNKTRKASNRLFEVIELYEGEPITFQNRKRNKK
                     QTDSSNQDNNMDKKRKIMLVIPSK"
BASE COUNT          709 a          358 c          401 g          677 t
ORIGIN      
        1 aataaacccc ttgattctaa atagatggtc tcctagatcg atgacaggag aagagttaag
       61 cgacaatgat atgatgagcc ttttcgaagc tgcaagatgg gcaccttctt cttctaataa
      121 tcaaccgtgg agatttattt atgcaaaaag aaacacagaa aaatgggata agctcttcaa
      181 tctaatgttc gaagggaaca aaatctggac aaagaacgca gcagtgctag tagttgtaat
      241 ttcaagaaag aattccgaac aaaatgaaaa accatcaaaa acatatcaat atgaggccgg
      301 ctctgcgtgg gagaatttag cgttagaagc agcaacaaga ggactagtag ctcatggaat
      361 ggcaggattt gattatgaga aagcaaggaa agacctagat attccagata actttgatgt
      421 aatggcaatg attgctattg gtaagatggg aacgaaggag agcctgccac tggcgcttca
      481 agaaaaagag catccaaatg atagaaaacc tttagcagaa atcataatgg aaggacagtt
      541 tagaaagtag caattctaat atctttctat gatttgactt atcttccttt tttactgtga
      601 acacctaatg caatacaaaa tgataaatca aatgaggatg caagtactga tattagtaaa
      661 caagaagagg cactagcata gttgacacat acatgttatc gttagtagca aaataaaaaa
      721 gaaagaatcg gtagaaatac ataggcctga tcaagatacg caagccattg cgaataatcg
      781 aagatacaaa taatcaaaag tagttaaatc atattatgaa caggatttta ttatgtcgaa
      841 aaccatgtat tattttctgg tttccatcgt gtttactact actgtggcta tattggttat
      901 tgcaatagct cattttgatg tcgtcgttgc tcagagcaac aacaataaca acaaacaagc
      961 tggaggatca tcgtcgaatc aatcaagagc aacatcgtta tcaactcaag gtcagggaat
     1021 acccggtgct caaacgaatg caaatccttt agcacaagcg cctataactg gtatcaaggt
     1081 aaagcctcct aataatacta gcaatgtttc tccattgcaa aagaccaata tgacaggcgc
     1141 atttccctaa tcagctttgt ttacttttga gttaaagaca gtatttgaac gtactcagtc
     1201 atttataata tcagatagga caatgattat aaatctttaa gagtagtatc atactgcaat
     1261 tgtaaggata ccttcttcct ctcgtatttt tgttcgtatt atcgctattt actaggtatt
     1321 acaagcatta ttttcctttt cttgtccata ttattatctt ggttgcttga gtctgtttgt
     1381 tttttgtttc tctttctatt ttgaaatgtt attggctcac cttcatacaa ctctataact
     1441 tcaaacaatc tattactcgc ctttcgtgtt ttgttattgt tattattatt aaagcccttg
     1501 ttcttcatca tatgtatgtt tgttgtgatt tgtaccaagt atttagatgg aagagcactt
     1561 gatcagaagg gagggaggga caataactgt tgtaatctag gctacattag gtctgtatat
     1621 atatgaacaa aatgatggtt cattgctaaa aggactttga atagttctta cttaagattc
     1681 aaatttacta tatattgtta tggtcctctg aattctacaa tggagtaaaa tgcattctta
     1741 cctgaatgat taaagttcgg tgatggtgta gatatgtgca ttatcttcat ttttgcagca
     1801 tctgctagtt tccatatgaa tccttttggt aactgtactt tggtgtcttg ctcttctcct
     1861 ggccaccacc acggatatag gcagttagag agatatcatc tatactataa ttataaatgc
     1921 attttgtatt ctgaaatttt caaacacaag gataccgcta aacccttaag acaggcgtta
     1981 tcacaaaaat aaatagatgg ctttaaagga agttacatgt ttgattgata ataatgtaga
     2041 tgtactgcta ccaaatactc aggtggcctt tcgtccaact ctcggtgaaa attggtttga
     2101 acggacgtta atagcagaac acggtttttc tgtagctata agatt
//
LOCUS       DASQSJ010000286         2814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_114598, whole genome shotgun sequence.
ACCESSION   DASQSJ010000286 DASQSJ010000000
VERSION     DASQSJ010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114598"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VE223_05640"
     CDS             complement(<1..290)
                     /locus_tag="VE223_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HZC21107.1"
                     /translation="MSYTSIIMEIFHHNKNICDQCGQKFKSYEDLIDHARHTHHHPIV
                     KCHDCGKEFIHEKDRLHHVREEHEKKMDHRSHKWEHAHDKKTSPQEQVDEYT"
     gene            570..854
                     /locus_tag="VE223_05645"
     CDS             570..854
                     /locus_tag="VE223_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21108.1"
                     /translation="MGISIAISLTISMLLPFPMSLVTIIGIFILLNFYLRKRMMKKNG
                     MGIFGAMNPTSSSSSFLGETSLNYYCMSCGTKHRKNACPKCGSKMKRVGL"
     gene            complement(1170..2015)
                     /locus_tag="VE223_05650"
     CDS             complement(1170..2015)
                     /locus_tag="VE223_05650"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HZC21109.1"
                     /translation="MKLANRKSSNKKIQGKIVLITGSSSGIGRQAAIDFAENGAQTII
                     LASRSKSKLEELERRIGSDFSSEVLVYPIDVSKEEDVRRMGREILDKFKYIDILVNNA
                     GFGIYNKVQDQQIEEIKSIIFTNYLGMVYCVKVFLDSMIERRSGHIINVASVAASFGV
                     AGLASYCASKYAMMGFSESLHHELYGSGVRVTVVSPIGVKTNFFNNESFHRHTPNYTG
                     FMLEPKKVSKAILAAANSHRLEIMVPFYVRAGVWFKHTLPYAINPLVGYLFRKQLNKS
                     KNEKK"
     gene            complement(2171..2470)
                     /locus_tag="VE223_05655"
     CDS             complement(2171..2470)
                     /locus_tag="VE223_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21110.1"
                     /translation="MSYNVRTLSDSIKFYLPRTEGYLEIIRHIAEQYGAMSLIEFDGY
                     FEGKFEPTKYMRVEVHVNDAKEDGLIEFANKIRIMLKQKSLAFEFNNRLILVEES"
     gene            complement(2605..>2814)
                     /locus_tag="VE223_05660"
     CDS             complement(2605..>2814)
                     /locus_tag="VE223_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21111.1"
                     /translation="LMVTDVANINAVATKEMMSADLFRFIERCVDEFLIRINGSEGSY
                     LSDPFKYNYWRTCFSCPHAFVREES"
BASE COUNT          848 a          544 c          459 g          963 t
ORIGIN      
        1 tgtgtatatt catcgacctg ctcttgcggg ctcgtctttt tgtcatgcgc atgctcccat
       61 ttatgacttc tgtggtccat cttcttctca tgttcctctc tcacatgatg caatctatcc
      121 ttctcgtgga tgaattcttt gccacaatca tgacatttta cgatagggtg atgatgtgtg
      181 tgtctggcat ggtctatcaa atcttcataa cttttgaact tttgcccaca ttgatcacag
      241 atatttttat tgtgatgaaa tatctccatt attatgcttg tatatgacat ctgttaaaag
      301 aatttcgtga ataacctctg ctgtgttctt ctattggatg gtgagaatat ccttgaattt
      361 gaagctgtcg ttacttccgt taaccttcgt acttctttat ctgtcagttg cgttgcaata
      421 tggttcatgc aagtataatg catggactaa cattgttaac tcacaacgtt aatcaaattc
      481 ttaatatttc ctatatacta taatatatta gtcgagcaaa gttgagttta aataataata
      541 agcagtttct tatacagcaa ctaacttgga tgggcatatc tatagccatc agccttacta
      601 tctcgatgtt attgccattc ccaatgtcat tagtcactat aataggaatc tttattttgc
      661 ttaacttcta cttaaggaaa agaatgatga aaaaaaatgg aatggggata tttggtgcaa
      721 tgaacccgac atcatcctca tcatccttct taggtgaaac ctccttaaac tattactgta
      781 tgagttgtgg gacaaagcat agaaaaaatg catgccccaa atgcggctca aagatgaaaa
      841 gggtaggatt atgatttgca ttgtaatgat gtagagaata tcgaggtctt ttgatataca
      901 atacttgctt gtagtctgca tcttattgaa ggaatctgaa acagcaccac tgaaagatca
      961 gttttgatcg taagggacaa taggccaaat tttcgacgca gactccttgt aatagagggt
     1021 caaacttatg gatcacataa ttggcttgaa tatttctgtt tcctgttctt gttattgatc
     1081 tattagcatc atctttgtta tgatagaact attgcttgca taaacaagct gcatgttagt
     1141 atcagcattt aaatcgagac catactttgt tacttctttt cattttttga tttgtttaat
     1201 tgctttctaa aaagataacc aactagtggg ttgatcgcat agggtagcgt gtgtttaaac
     1261 catacccctg ccctaacata aaatggaacc attatctcaa ggcgatgaga gttggccgca
     1321 gcaagaatgg cttttgacac ctttttgggc tcaagcataa agcccgtata attaggggta
     1381 tggcgatgaa atgattcatt attaaaaaaa tttgtcttta ctccgatcgg acttacaact
     1441 gttacccgta caccagaacc atacaattca tgatgtagcg attcagagaa acccatcatg
     1501 gcatatttag aggcacaata tgatgctaaa ccagcaaccc caaaactcgc tgcaactgat
     1561 gcaacgttta ttatatgacc tgatctcctt tcgatcatag aatctaaaaa taccttgaca
     1621 cagtacacca tccccaggta atttgtaaat ataattgatt ttatttcttc gatctgttga
     1681 tcttgtactt tattgtatat tccaaaacca gcattgttta ctaaaatatc gatgtatttg
     1741 aatttatcaa gtatttccct tcccattctt ctaacgtcct cttcttttga tacatcaatt
     1801 ggatatacca aaacctcaga ggagaaatct gatcctattc ttctttcaag ttcttctaat
     1861 tttgattttg accgtgaagc cagtatgatt gtttgagctc cgttttctgc gaagtctata
     1921 gcagcctgtc ttccaatacc agatgaggaa cctgttatta aaacaatctt cccttggatc
     1981 tttttattac tactctttct atttgctagt ttcaatcgaa ctgtgtatta aatatacaac
     2041 agcatataca aatgattctt tcagattatc cttcaatgat aaaagaatca gaatacggat
     2101 tagcttaacg attactagtc gacagttatt atcgtcacca ccatgctcga gaaaagaaca
     2161 aaacttgcaa ctagctttct tctacgagta ttagacgatt attaaattca aaagcgagac
     2221 ttttttgttt aagcataatc cgaattttat ttgcgaattc tataagacca tcctctttag
     2281 catcgttaac atgcacttct acccgcatat atttagtggg ttcaaatttg ccttcaaaat
     2341 agccatcaaa ttctattaga gacatggcac catattgctc agctatgtga cgtattattt
     2401 ccaaatatcc ttctgttcgt ggaagataaa actttataga atcgcttaaa gttcttacat
     2461 tataactcat aattgttgtt cctttagcaa tgctaggaat taataagtag atcatactat
     2521 aataatccaa tatgttctct acaagaagat atttcgaact acaaggttga tcaatgcgtt
     2581 atatgctaat gtttacgata aacctcagga ttcttctctt acaaatgcgt gagggcaaga
     2641 aaaacaagtt ctccagtaat tgtacttgaa gggatcagaa agataggatc cctccgaccc
     2701 attaatcctt ataaggaact catctacaca tcgttctatg aatctaaata gatcggcact
     2761 catcatttcc tttgttgcaa cagcattaat attcgcaacg tccgtaacca tcag
//
LOCUS       DASQSJ010000287         2597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_374356, whole genome shotgun sequence.
ACCESSION   DASQSJ010000287 DASQSJ010000000
VERSION     DASQSJ010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374356"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(434..1759)
                     /locus_tag="VE223_05665"
     CDS             complement(434..1759)
                     /locus_tag="VE223_05665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21112.1"
                     /translation="MKRFSVREWLLYPAQKNVRKGFADGLGLPVTGMYSHRRFLLGCI
                     IASLGIFISATGGSWDISNHLLNKPETFFSAPHAMLYTGVGSAMVGCIVMFRAYKSMH
                     TSCHLIGTSAKLVIVGISMLITAGPVDFGWHSAFGLDGLLSPPHFVLLMGMIISSPGS
                     LLGIIILCTNCNNKLHNDNNNNAAASNLENVSVYKQPSSVSSGTSILVRTSYIAIILI
                     IMGLMPVWMSLDGMISMFSLPFSKTQYFNFNPDPSYAAVFATVGYPFLLSLILISCFR
                     LGENRFGVVSIAGSIYLAVTAITAIIPNESLISTLPFYIMNLVPLIAVDILLSVFQHR
                     YLFSISIGGAILGSTFFMVQYPLITYVYNEVVTKQAFVWPSLTSSVYFGMIGNIYPLL
                     VIPGIAMGIIGAITANRILSVILSSIITHIPKNFITQEQSSSSFYTDRN"
     gene            complement(1950..2573)
                     /locus_tag="VE223_05670"
     CDS             complement(1950..2573)
                     /locus_tag="VE223_05670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21113.1"
                     /translation="MNIGYKYISDGHKRNRIIVVLIILSLAVYFSISIYVLPSLYIST
                     PKLRPLPLIINTKISAPQIRLGKTFYLDVTAENAGDNADIQIVSAGFPNLTSIGRYIN
                     IRQSDFTQKPLFVNIGDKVGSNYTGLENIVYAKYPSIEAFSRPWHSKNIHHIEFEVKP
                     TSVGKFVIFLKTVALPHSGDFAHYPRSGIKDFQNEFVKVYSIEVLQT"
BASE COUNT          855 a          489 c          477 g          776 t
ORIGIN      
        1 acgttgatag acccaatttg aaatgtcctt attgtgagtc tccatttgat acaaaagaag
       61 ggctctcaaa acatatagac aggctgcacg gtggggctgg cgttcttgag ggggacgtaa
      121 gacgcatatt tgaatagaaa aaacaacaca taatgcgacc accaaccaat tttctaaatg
      181 taaagacata acgatagcca caggtctgat ttcatgtccg aggcgtcata tagatagtgg
      241 cttttttaga ccaggtcagc tgtacgcact tcaatcattc cattcgttac ttctactgat
      301 tggattgcct tagtgctatt gtgtatattt acatcccagt atgagcagca gcggcatcat
      361 ttgggtctgc tgtaaacagt cgtagttatt gcaaaggcaa cttatcttaa gatacagagg
      421 atgctataaa tcctcagttt ctatctgtgt agaaagaaga agaagactgt tcttgggtta
      481 tgaaattctt tggtatgtgt gttatgatag aactgagaat gactgataaa attctgttag
      541 cggtaatcgc tccaattatt cccatagcaa tgcccggtat taccaataga ggataaatat
      601 tgccaatcat tccaaagtat acagaagatg ttagacttgg ccaaacaaag gcttgttttg
      661 taactacctc attgtagaca tacgttatca agggatattg caccataaaa aaagtcgatc
      721 caagaattgc acctccaata gagatggaaa atagatatcg gtgttgaaat acagataaca
      781 aaatatctac tgcgataaga ggtactaaat tcataatgta aaaaggaagt gttgaaatca
      841 acgattcatt tgggattata gccgttattg cagtgactgc aagataaatg gaaccggcta
      901 tagatacgac accgaacctg ttttccccca atcgaaaaca agaaatcaaa ataagtgata
      961 aaagaaacgg atagccaact gttgcaaata ctgccgcata ggatggatct ggattaaaat
     1021 taaaatactg agtctttgag aatggcaggc tgaacatact aatcatacca tcaagcgaca
     1081 tccacacagg catcaatccc attatgatca aaattatagc aatatatgat gtccgcacta
     1141 aaattgaagt acctgacgaa acgctcgatg gttgtttgta gacactgaca ttttccagat
     1201 tggatgcagc agcattatta ttattatcat tatgcagttt attattgcag tttgtacata
     1261 aaattattat tccaagcaaa gatcctgggc tgcttatgat cattcccata agaagtacaa
     1321 aatgtggagg gcttagcaat ccatccaacc caaaagcaga atgccatcca aaatcaacag
     1381 gacctgctgt gataagcatc gaaataccaa caattactag cttagcagaa gtaccgatga
     1441 ggtgacagga agtgtgcata gatttatacg ctcggaacat tactatacaa cccaccatag
     1501 ctgaaccaac ccccgtgtac agcatggcat gaggagctga aaagaaggtt tcaggtttat
     1561 tcaacaggtg gttcgagata tcccagctgc ctccagttgc agatatgaag attcctaaac
     1621 ttgctattat acaaccaagt aaaaaccttc tatgagagta cattccagta acaggcagtc
     1681 ctaaaccatc agcaaagcct tttcttacat ttttttgcgc tggatacaac aaccattccc
     1741 ttacgctaaa gcgtttcatt gaagccaatt tagatattgc tttaattgat atatattgat
     1801 aatgatcata tttcaatgct ctatgcactc agttatgtta gtcatatact tgttgtcagc
     1861 aattagttcc tagtcatctg gggagataaa accttgttgt atcaactact agtcaactac
     1921 ctttccgcac atgtccagat tgcttgtttt taagtttgga gcacctcaat agaataaact
     1981 tttacaaact cattctgaaa atctttgata ccactacgag gatagtgagc gaaatcacca
     2041 ctatgtggta atgcaacagt ttttaaaaat attacaaatt ttcctactga ggtgggcttt
     2101 acctcaaatt ctatatgatg tatatttttg gaatgccatg gtctgctaaa tgcttctata
     2161 gaagggtact ttgcgtaaac aatattttct aaaccagtgt agttcgatcc aactttatca
     2221 ccaatattta caaacaaagg tttttgagtg aaatcagatt gtcttatgtt gatatatcta
     2281 cctatgcttg tcaaatttgg aaaaccagct gatacgattt gaatatctgc attgtccccg
     2341 gcattttccg ctgttacatc aagataaaat gtctttccca agcggatctg tggagctgat
     2401 atctttgtat tgataattaa cggtaatggc ctaagcttag gtgtgctgat atataaactt
     2461 ggcaaaacat aaattgaaat tgaaaaatat actgctagag acagaatgat aagtacaact
     2521 ataatgcgat ttctcttgtg accatcagat atatatttat atcctatatt catctatatc
     2581 ctaacactct tctttct
//
LOCUS       DASQSJ010000288         3594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_233575, whole genome shotgun sequence.
ACCESSION   DASQSJ010000288 DASQSJ010000000
VERSION     DASQSJ010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233575"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VE223_05675"
     CDS             <1..273
                     /locus_tag="VE223_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21114.1"
                     /translation="NELNIKKRKDVSVEDNNKEDGDNNDFIDVGRIRLNRKKQKEGLE
                     SLKNVSTCNDIDNGKIKPVFAGAAISGLFAIFYDGVDYCTGFTCEK"
     gene            complement(545..868)
                     /locus_tag="VE223_05680"
     CDS             complement(545..868)
                     /locus_tag="VE223_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21115.1"
                     /translation="MALYMVKARPRKDLLQNLQKDLSSGKISKMRPFGHALQYSLENA
                     RIDDNENADYAIWVEEDYCSPPLAMERESVLDRYFNDIEVVRIESEEEGWNMIKEKPS
                     LWNKK"
     gene            complement(931..1059)
                     /locus_tag="VE223_05685"
     CDS             complement(931..1059)
                     /locus_tag="VE223_05685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21116.1"
                     /translation="MNSCFDPEPSYNQYDASMVDVNDAFIGAIDAIGTEIGDFLSI"
     gene            1218..1391
                     /locus_tag="VE223_05690"
     CDS             1218..1391
                     /locus_tag="VE223_05690"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HZC21117.1"
                     /translation="MPSSSAYNKLENVLILQGGGSLGAFGCGVFKTLANNNIKLGIVA
                     GTSIGGINANLDI"
     gene            complement(1490..2998)
                     /locus_tag="VE223_05695"
     CDS             complement(1490..2998)
                     /locus_tag="VE223_05695"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HZC21118.1"
                     /translation="MDKQQQEEKERTFDLVVIGTGTAASTTAADCSSAGWSVAVIDSL
                     PFGGTCALRGCDPKKVLVEAARVIDSNQRHEGKGIIGSEAIHIKWNDLIRFKRTFTDP
                     FPKNREDGYINAGIAPFHGHARFIGPTTVKVEKIHSNSNNNNNNKAILNSRHILIATG
                     SKPMSLNVPGSENIITSDQFLDFGYDRLPDRIVFVGGGYISFEFAHIAARAGAKVTIL
                     HRGKRPLEHFDPDLVNRLVERSRDIGIDVRLRSEVKSIDKLSSILSSSSPSTTKSSSH
                     SHKLIVHYSSSLDNSKHGGNNDKISKIQADMVVHGAGREPNIDTLDLNAAGIEYTHRG
                     ITVNQYLQSISNPSVYAAGDAAANMGLPLTPVASYDGAVVANNLIKGNTLKSNYTGLP
                     SVVFTIPPLVSVGMQEKEAKEKGLRVKINYQDTSGWASNRRVGETCAAFKVLVDEDTN
                     KILGAHILGPHADEIINIFSIAIRLGLTTKDLNDPILYTYPTTSSDILYMLQ"
BASE COUNT         1151 a          680 c          657 g         1106 t
ORIGIN      
        1 aatgaattga atatcaaaaa aagaaaggac gtatctgtag aggacaacaa caaagaagat
       61 ggggataata atgatttcat agatgtaggc aggatacgtc ttaatagaaa gaagcagaaa
      121 gaaggtctag agagtctgaa aaacgtatct acatgcaatg acatcgataa cgggaaaata
      181 aaaccagtat ttgcaggagc agcaatttct ggtctttttg caatcttcta tgatggtgtt
      241 gattactgca caggattcac ttgcgaaaag tgataagcgt tcaaacgtgg tttaataata
      301 acatagtcat atctacagta taggagataa atcttcaaaa caatcttttg tttagtagca
      361 aatattcaca tattaaccag tttggctcca tctatcttcg acgaatcatg gaacagtgga
      421 attaatgcta agatgagaaa gcatacacta aataaatcag cttttgatac tataacagaa
      481 gaagctgatt attggctcat tattcttgat gatgaggact acaatgatga catatgtata
      541 tgtcttattt tttattccaa agactcggtt tctcttttat catattccat ccttcctctt
      601 ctgactcgat acgaaccact tcaatatcat taaaatatcg atcaagtaca ctttctcttt
      661 ccatagccaa tggtggtgaa caatagtctt cctctaccca tattgcgtaa tcagcattct
      721 cgttatcatc aatcctggca ttttcaagac tgtattgaag agcatgtcca aatggtctca
      781 tttttgatat cttgccagag ctcaaatcct tttgtagatt ttgtaataga tcctttcttg
      841 gtctggcttt gaccatatat agtgccatat agataactac gcgagtatta cataaaaaga
      901 tggtttaatt gtttgaggct gcattgcttg ctatatcgaa agaaaatcac ctatttcagt
      961 tccgatagca tcaatagctc caataaaagc atcattcaca tccaccatgc tggcatcata
     1021 ttggttgtaa gagggttcag gatcaaagca gctattcaca ttatatcatg aaatcgtacg
     1081 tatgtaaaca aaaaaagaat cgaagactat agatgataaa actaaaaaaa tgaaaacaaa
     1141 taatgaaaaa tgatgacaga aggtcgggcc aatacttcat caaacaaagt caatagtaat
     1201 atagcaatag aagcacagtg ccatcatcat cagcatacaa caaactcgaa aatgtgctga
     1261 tacttcaagg tggtggttct ttgggagcat ttggttgtgg agtattcaaa acacttgcaa
     1321 ataataacat aaaacttggt attgtcgcag gaacatctat tggaggaata aatgccaact
     1381 tagatatttg atgtaaacac gtcgatggtg cgacaagatt ttatcttttg tatatcttca
     1441 aggagagcaa attatatttg tctatactac tgtcccagaa tattgatatt tattgtagca
     1501 tataaagtat gtctgaggag gtagttgggt aagtataaag tataggatcg ttaagatcct
     1561 ttgttgtgag ccctaatcta atagctattg aaaatatgtt aataatttca tcagcatggg
     1621 gacctaggat atgagctcct aatattttgt ttgtatcttc atctactagt accttaaatg
     1681 cggcacaggt ttcacctacc cgcctatttg atgcccaacc agaagtatct tgatagttaa
     1741 ttttaactcg cagtcctttt tcttttgctt ctttttcctg catacctaca gaaacaagag
     1801 gaggaatagt aaatacaaca ctgggcaagc cagtataatt ggacttcaga gtattaccct
     1861 tgattaaatt attggctaca acagccccat catagcttgc tacaggagtt agtggtaggc
     1921 ccatattggc agcagcatca cctgccgcgt aaacagatgg atttgaaata ctttgcagat
     1981 attgatttac tgttatgccc ctatgagtat attctatacc cgctgcattc aaatcaagtg
     2041 tgtcaatatt cggttcccta ccggcaccat gtaccaccat gtcggcttgt atttttgata
     2101 ttttatcatt gttcccgcca tgttttgaat tatctaatga agaagaataa tgcacaatta
     2161 gcttatgact atgactgcta gatttcgtcg ttgatggcga tgacgacgac aatattgatg
     2221 ataacttatc aatactcttg acttctgacc gtaatctgac atcaattcct atgtctctgc
     2281 ttctttctac caatctgttt acaaggtcag gatcgaagtg ttccagaggt cttttaccac
     2341 gatgtagaat tgtgaccttt gctcctgctc gtgcagcaat atgtgcaaac tcaaatgaaa
     2401 tatatccacc tccgacaaat acaattctgt caggtaatct gtcatatcca aagtctaaga
     2461 attgatcgct tgtaatgatg ttctctgaac caggaacatt tagactcata ggttttgaac
     2521 ctgtagctat tagaatatgc ctactattga ggatagcttt attattatta ttattattcg
     2581 aattgctatg tattttttcc actttaacag tggttggacc aatgaagcgt gcgtgaccat
     2641 gaaacggcgc aatgcctgca ttaatataac catcctctct attttttggg aaaggatcag
     2701 taaaggtgcg tttaaacctt atcaaatcat tccacttaat gtgaattgct tctgaaccga
     2761 ttataccctt gccttcatgc ctttgatttg aatctattac tctagctgct tcgacaagca
     2821 ctttttttgg atcacatccg cgtaaagcac acgttccgcc aaatggaagt gagtctatta
     2881 cagccacact ccagccagca gaactgcaat ctgccgcggt tgtagaagct gcagtaccag
     2941 ttcctataac tactaaatca aacgtacgtt ccttctcttc ctgctgttgt ttatccatgt
     3001 tcactaacaa ctaaattctc aagataatat gcttgtgaca tatataagag agattcataa
     3061 atgagacagg taagaattga caagcagagg tgcttgagga taccatcttc agatagagaa
     3121 tctacggcta gagacataac aaaaataata tattcatatt ctagatggtc taacctagaa
     3181 ggactataga agttttcatc ctttatttca aggcctctgg ataagtcaag tctcacaagc
     3241 aggatttaga gtgcatttca tggaaccaga gctaacctgc ataggtaggc gccagtagta
     3301 caagggcagc tcctgcaaca agttccaaga aagcccgaca gcttcaaaaa taataataaa
     3361 acgcttcaga tgatctctgc aacggtcttt gcaatcccag gagggtatta cgaaatgtaa
     3421 atcccctaaa atccttgacg attacagctc aagttataga ttcaaggcac gaggttatat
     3481 tttgattatc tgactaatga atttacaaaa ttttgcacaa agtcggggac gcaaaaatgt
     3541 aaagccgtac agcagcacaa gttcaagtct tctgcgttat tcgatggatg gtca
//
LOCUS       DASQSJ010000289         2282 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_415353, whole genome shotgun sequence.
ACCESSION   DASQSJ010000289 DASQSJ010000000
VERSION     DASQSJ010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415353"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(339..731)
                     /locus_tag="VE223_05700"
     CDS             complement(339..731)
                     /locus_tag="VE223_05700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21119.1"
                     /translation="MNNRFAITRPNLPVLLVLVFIVIIGMIGIPFGDPRFVIYAILIE
                     LLYISLAALIAKGYAKALYACIFLSVLIIVGNSFVTAHIHRIMTFSRPLNTLVLIIGG
                     YILQGLLAYTSIAAIRKHNRSKSVLTNI"
     gene            1969..2265
                     /locus_tag="VE223_05705"
     CDS             1969..2265
                     /locus_tag="VE223_05705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21120.1"
                     /translation="MLLDNSSRNDKNNIIGKRVRLIHTDDDRFTHLRAGDMGTVSDAT
                     LLPESMGGKKQVWIQWDNGSKFAMIEDLDKDKIEILFEDSDGDYQKKDRKQETK"
BASE COUNT          745 a          398 c          451 g          688 t
ORIGIN      
        1 ccagttggta gtctagcctt tcttgccaat tcagtaggta tgtataaaga tgaatatgac
       61 aggtcgggcg atggaatgac tacaaactat ctttggaaac gttaaagcta tttaatgagc
      121 gacagcttat ctattcggaa aagggtggag gaaatatggc ttcagagagt aatatgacag
      181 agctcaatga aaagtaactt acatctgctg caaatgcaat agaaacttcc ttcatgatat
      241 tcattgtaaa gtagttttga ttttgggaat tggtagagtg agaatgagga gaagcataag
      301 cataaggaga ttaatcattc taccttgaaa taacctaatc atatattagt cagtacggat
      361 tttgatctat tgtgttttct tattgctgct atactagtat atgctaatag accctgtaat
      421 atgtatcccc ctatgattaa aaccaaagtg ttaagtggcc tagaaaaagt cattatcctg
      481 tgaatatgcg cagtaacaaa actatttcct acaataatta ggactgaaag aaaaatacaa
      541 gcataaagtg cctttgcata gccttttgca ataagagctg ccagagatat atacaacaat
      601 tcaattaata ttgcataaat aacaaacctt ggatcaccaa aaggaatccc tatcatacca
      661 attattacga tgaaaactaa tacgagtaat actggtaagt ttggcctcgt gatcgcaaac
      721 ctgttattca atgatttact tataacatca ttctttcaat aatataattt aacctgtctg
      781 tctctaagtg tattagatat atctatcatt attgttatta tcatagttgc tgccataact
      841 ttatctatct tttggcatca ttcatcatag caattgcaat aattgctgct ggattgacct
      901 gttactcatt gatattggaa tactaaagac gaatggcgag atttctgctt ggattttata
      961 gagcagtaag acagacagac gacaaggtta atgagatgta atatattaat tttttattgc
     1021 aaaaccaatt gcaatagaag agttggtaaa atggataaga taataacgat gaatgcaggc
     1081 taaagtgtgt ataagtcatc agactcctac tacaatattc ttctccaatt ccactttagc
     1141 ttgattctgt ttaggcaagg gttcactcca cattagctaa tgattcctct gctactatta
     1201 gtaggacaac agtcacaact acaaacagca cagtatattc cttaggatat gctgatactt
     1261 gggcatgtag aaattgtaaa atcaaggccg acaaacactt tacgcaaatg catgattgta
     1321 gcgggaaagg atagagaaga atttgtatga aagattggtt ttcttccact ttctgtagag
     1381 attttctgtc ttcttatcaa ctaatttaaa cttgaaaata taaatcacgc ttctaccaac
     1441 aacaatcatc cgactaacca aaagagaaga acgatccgtc attcagaatc tgcacaatgg
     1501 gtaaaggcct attgtgtcca tagaaatgat gagttgccgc catgttttga gaaataggta
     1561 actccagttc gagagaacct tggagtagtc gagtcacatg gtggtaaggg caaaccaaaa
     1621 ggctggctct gaacctattg aaagctgtct taaaggaaag ccacatgtct ttgagtgcta
     1681 gtcggatcca ttcttatcat atcattattc tcttcatagg ttctgtcaag tcttaggttg
     1741 acctagttat gacaccaaca ttgcgccatc ttaagacgcg taagagttct tcactacgtt
     1801 cctgtgccgt tttgtaacct ctccattgag tccttctgtg acaacagcag ccattgattt
     1861 cgtgcttgat gatatccttt tctggaagca tgtatgtcat ccccttcagc tagtcaaaaa
     1921 gctgttcgtc gatccgacaa ggttaatggg gggtttgttt gattatcttt gttgttggat
     1981 aatagcagta gaaatgataa gaacaacatt attggcaaac gcgttcgtct gatccatact
     2041 gacgacgatc gattcaccca tttgagagca ggtgacatgg ggacggtatc tgatgctact
     2101 ttgttacccg agtccatggg cggtaaaaag caggtatgga tacaatggga caacggttcc
     2161 aaatttgcaa tgatagaaga cttggataag gacaagattg agatattgtt cgaagacagc
     2221 gatggcgatt atcagaaaaa agataggaag caggagacga aataaagaaa attgtaacaa
     2281 cc
//
LOCUS       DASQSJ010000290         8175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_512577, whole genome shotgun sequence.
ACCESSION   DASQSJ010000290 DASQSJ010000000
VERSION     DASQSJ010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8175
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_512577"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..245
                     /locus_tag="VE223_05710"
     CDS             63..245
                     /locus_tag="VE223_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21121.1"
                     /translation="MLPQCGIDVRNDYINRNYDSNLAYQLAADYLQVRGGLGLGTTTT
                     TTSFGSGGLTSSRTVD"
     gene            complement(710..1060)
                     /locus_tag="VE223_05715"
     CDS             complement(710..1060)
                     /locus_tag="VE223_05715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21122.1"
                     /translation="MAGEDLLANSCSGIGDPDMSGEHHQHKEEAGGGYQNRLIPVAWA
                     ILVMGVSLAVVILLYVWIGHIGPSYSSDTLQRQQQELRQQYHLPYRPVITDPKVLQTP
                     PSERGLPGYDTSPQ"
     gene            complement(1481..2968)
                     /locus_tag="VE223_05720"
     CDS             complement(1481..2968)
                     /locus_tag="VE223_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HZC21123.1"
                     /translation="MVDFSSKLQKFDLIVIGSGSGLDVANAAYQHGLRVAIIEKNRMG
                     GTCLNKGCIPSKLLIHSADVAETIKHARLFGLKVDGFSVDFPAIVERVNGITDSMSDE
                     IRKSLEGMENPKLFTKECKFVGEKTISIRSDDKNRHDDDSETITADRILIASGTRPRI
                     PRIEGLEGSGYITSDEALRLKKQPNVLTIIGGGYIACELAHFFGALGTKINIIQHGDA
                     LIPDEDNEISKKFTEIFSKKYNVYLDYETEFVSNKDEDGDNDSNSEFHVIAKNTSGKS
                     IEVYSDQLLIAAGRIPNSDKLDLEKTGVKINKKGFVITDRYLETNVKGIFALGDAIGR
                     FLFKHSANHEAQYAYYNLLHPDSMIPVSYHAMPHAIFSSPQVAGVGFTEQEIIKEQEK
                     NNNNPGSIIEYQKSVYHYIDTAMGQALQDQDGFVKFLVDKKDKKILGCHIIGSQASIL
                     IHEVLVAMKVDANNNGGGTIDNITKTIHIHPSLSEVVARAAGENN"
     gene            4300..4503
                     /locus_tag="VE223_05725"
     CDS             4300..4503
                     /locus_tag="VE223_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21124.1"
                     /translation="MAEKTLIISLLANKSSKSLEKTKTRTIAQLTQSNSTRSTTTIRH
                     PIGTAMDRYIRSIRAMNKRTAYE"
     gene            complement(5020..5169)
                     /locus_tag="VE223_05730"
     CDS             complement(5020..5169)
                     /locus_tag="VE223_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21125.1"
                     /translation="MSLYIMIMRGTQSLSSILQNRHDDSPNNNTVTTVDEFKELREMP
                     FLESS"
     gene            complement(5183..6313)
                     /locus_tag="VE223_05735"
     CDS             complement(5183..6313)
                     /locus_tag="VE223_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21126.1"
                     /translation="MAIILDVVVVLIAFIRYYTVTSLTLSIQHTNQQQQQQQLIKYYC
                     SKCDTLLKTTRDDFDIDFKFSNSQEECPCCGSLISKTLRKEKVHGTATTTNMDLSSSS
                     LCLLPPPPKIQTAYEQFSNRLTFGIEKIDSVLELTTGETVCIVSTDHNNSNNKYANNI
                     LLSRLCVRALMLKIQGGFNSPEVIFVDAAGNTSDIYQCVNFARQYGLNIKKTLQSIVV
                     SRSFTMYQLANTIINDLPKVLEQFSGAKVIVIGNLLSLFVNDPQVQIKEAKSLIRQIV
                     NAVKMYTYNNNILSVISFSCCSNNTKTYARLILERIDKYIEITTRRGVGEEDGNDKRK
                     RKRKNDDDLSIDIKIKNDKNHSRQQQRSVILQEKVLHLASRE"
     gene            6327..6569
                     /locus_tag="VE223_05740"
     CDS             6327..6569
                     /locus_tag="VE223_05740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21127.1"
                     /translation="MLQGTVELGPVTLPAGTILCVSAIGAVVSEITPGGTVLTATVFL
                     RTDLTPAGTPPTCTAGQVAILASGTVLPALLIDSLQ"
     gene            6770..7381
                     /locus_tag="VE223_05745"
     CDS             6770..7381
                     /locus_tag="VE223_05745"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HZC21128.1"
                     /translation="MWFMSQGTNNVDFTVIFDGNNLDEWQMAGKGKFVVLRGEEEEEE
                     EEQSIILQTEGGMGLLWYTKKMYRNFILKLDWKVNRKSDNSGIFVRFPNPDNDPIIAV
                     NNGYEIQIDDLAMPDGNTIHQTGAIYGFAAPSYSSKQIASKDAGQWNRFEIKVVDQSY
                     SVILNNILITEFVGTRSLQGFIGLQNHDSKSKVSFRNIMIKEI"
     gene            7490..7684
                     /locus_tag="VE223_05750"
     CDS             7490..7684
                     /locus_tag="VE223_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21129.1"
                     /translation="MNTCAMTGCTKSTIVISPIDIKWFYKISKEGLCINRKDLHKIIE
                     DPNMPKDVKKQITKIFPHLS"
     gene            7927..>8175
                     /locus_tag="VE223_05755"
     CDS             7927..>8175
                     /locus_tag="VE223_05755"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HZC21130.1"
                     /translation="MQHNNIRLDNTDLQIIRLLARDCRTPYRNISSIVGITTNAVKER
                     IVRMVSNGIIQKFVVLVNPIIFGYEKECILILRHIDKII"
BASE COUNT         2633 a         1416 c         1448 g         2678 t
ORIGIN      
        1 tgggttaaat ctataagtaa atcagtttta cttttaatgc tttggtacac cataacaatt
       61 caatgctgcc acaatgcggt atagacgtaa ggaacgatta catcaaccga aactatgata
      121 gcaatctggc atatcaactt gcagcagact acctacaagt aagaggtgga ttgggtttgg
      181 gaacgacaac gacgacaaca tcttttggat ctggaggttt gacatctagt aggacggttg
      241 attaggatca gcaacgataa caactaaaac cgcaacactg gcagtagatt acctcttcgt
      301 tcaagtcctg ggttagcagg aggtgctggt gttggcagta gtaatagtag tgcaagttta
      361 ggaaatagcg aagggacagg acgtaatagt atgctgcaac agattccatc caagcctaca
      421 gattttcctc acaatcatcc aagtgttata caagttcatg tagatcggat atgactcaac
      481 aggaaaaaca aatcaatacc aatagcaata atgataacag tagtatgtat gccgagattt
      541 caggacaagg tgatatatac ttcttttata gacaagaaaa gtgctgaaga atccggtttg
      601 tcatatattg ttaatcaagg atcaagggca aatacttgaa tgggattgtt tcctgaatca
      661 gcaacgtaaa cattacttaa agaatcaagc gcaaggtcgt agcaaaaatt tattgaggac
      721 tagtatcgta tcctggtaat cctctttcag aaggaggtgt ctgaagtact tttggatctg
      781 ttataacagg tcgatatgga aggtgatatt gttgtcttaa ttcttgctgc tgtctttgca
      841 gcgtatctga cgagtaacta ggtcctatat gaccaatcca aacatacaaa agtattacaa
      901 cagcaagaga tactcccatt accaatattg cccatgcaac aggaataagc ctgttttgat
      961 atcctcctcc tgcctcttct ttatgttgat gatgttcacc agacatatcc ggatcaccaa
     1021 taccactgca cgagtttgct aataagtctt ctccagccat ggtaacagat tagggttgcc
     1081 attcaaatca ttgaatgaat aaatgaatgg caatagctga ttggccttga tcagttcttt
     1141 ctaagtggta gaaccttact gggaatgcga actatctgct acagctgcca ttggaagaaa
     1201 gagaaggtga aatagctgat ggcttttcat acacataaga cgatataata actatgaact
     1261 cgaagaaatt atcggcaaat ataaaacatt ggaatgaaaa acataaagaa tcattattgt
     1321 ctctgatttg cagatcaaaa gagttaactg caattgcaaa attgtatctg tgattaggat
     1381 ccatgcgatt tatcaattct taatagaatt cttatgagtg ccagttatat tggaagtatt
     1441 ggatgggaca ggagcattta tcgagctgtg gctctaatct tcaattattc tctcctgcag
     1501 ctcttgcaac tacttcagaa agcgatgggt gaatatgaat ggtttttgta atgttatcaa
     1561 ttgtaccacc accattatta ttagcatcca ccttcatagc tactaaaact tcatgaataa
     1621 gaattgaagc ttgacttccg attatatgac atccaagtat tttcttatct ttcttatcca
     1681 cgaggaactt tacaaaaccg tcttgatctt gaagtgcttg tcccattgca gtatctatat
     1741 aatgatatac agacttctga tattctatta tgcttccagg attattgtta tttttttcct
     1801 gttcctttat tatctcttgt tctgtaaatc ctactcccgc aacttggggt gagctaaaaa
     1861 tcgcatgggg catcgcatgg taactgactg gaatcatgct atctggatgt aataaattat
     1921 aataagcata ttgcgcttca tgatttgcac tgtgtttgaa caagaagcgt ccaattgcat
     1981 ctcccaatgc aaatattcct ttaacgttag tttcaagata tctgtctgtt ataacgaaac
     2041 cctttttgtt aatctttaca cctgtcttct ctaagtcaag tttatctgaa tttggaattc
     2101 ttcctgctgc aataagaagt tggtctgaat aaacttctat tgattttcct gaagtatttt
     2161 ttgctatgac atggaattca ctattactat cattatcacc atcttcatcc ttatttgata
     2221 caaattcagt ctcgtaatcc aaatatacat tatatttttt ggaaaatatt tctgtgaatt
     2281 tttttgaaat ctcgttatcc tcatcaggta tcaatgcatc tccatgctgt ataatattga
     2341 tctttgttcc cagagcacca aaaaagtgag ctaactcaca agctatgtat cctccaccta
     2401 taatggtgag cacattgggt tgctttttga gacgtagtgc ttcatcgcta gttatatatc
     2461 cacttccttc aaggccctct attcttggaa ttcttggtct agtaccagaa gcaattaata
     2521 tcctatccgc agttattgtt tcactgtcat cgtcgtgtct gtttttatcg tcactgcgta
     2581 ttgagattgt tttctctccg acaaatttgc actcttttgt aaagagtttg gggttttcca
     2641 taccttcaag gctctttcta atttcatctg acattgaatc tgttatgcca ttaactcgct
     2701 caacaatcgc tggaaaatca acagaaaacc catcaacctt tagcccaaaa agacgtgcgt
     2761 gcttgattgt ttcagccaca tccgcactgt gtattagtaa cttggatggt atacaacctt
     2821 tattgagaca agtcccaccc attctgttct tttcaataat tgccactcta agtccatgtt
     2881 gataggctgc gttagcaaca tctaatccag aaccactacc tataactatt agatcaaatt
     2941 tctgcaattt agaagaaaaa tctaccattc tccgttctaa tatatttaat gagcaggttt
     3001 gtcatttaag ttattatcaa tagatgtgaa tctgacgagc ccttatacga caatttctaa
     3061 caatccatat ggaagtcgca aaatacctta tgtggtcctt tagcggaagc aaatcaagaa
     3121 attcaatgta acgtctcata cagcgaaaca aaaacaaatc cattgtatga gattacactt
     3181 cttggataca accagaaaag atgcgaagaa tcaatcagtc gatccattta aagtacttga
     3241 tgccggaagc actgagcaac caataccaaa acggtatgcc atctagatac gagatcagac
     3301 gcgtatcctg agaaatacta attcaactat gtagagtaat caattctatt tcatgttctg
     3361 gacaaacgtg ttccaatatg atctgatgat taaaaagata tctacatcca catgagtatt
     3421 cgagctgttt tcttcttcta gtatagctac tacgatttac atcctgttcc atcaactcag
     3481 ccattgtgtt attatttatg tacattctat tagattacct tttcctttta caaattatgt
     3541 ggctctttta gcaaggcatt tactgctacc tcattaacga tgtattatat aaggatataa
     3601 tttataatag taattgtagg gagattgatc gcaaaaccat ctcctgaagg ctttgaaaag
     3661 ttggcagttc attagcatac ttgagtacat ttgctatgtc atttacatta cccattacct
     3721 cgtttacagt atcttgtcta attttaagaa cgatggaaga tgatggtggt ggtagttcct
     3781 ttcttcatac aaaagtttac aagagtgacg atttatatat taaatgccct tgcagaaata
     3841 tcaaaacatt tggtttgttg tttgattgct tacttgccta ggtttgaaag acagctagtt
     3901 acacgtaaat tcttagcttt gtcttttttt atcccattat tattattata attattataa
     3961 ttataagtca taataaattg gataatactg ctgtattact gatctattgc acaggcataa
     4021 aagatcaatt ttgaattatt attgctaatg gttctgtatg caaccaaata ttgattcttt
     4081 taataaggta gatgctgtca ccaggatatg ctatgcatag ttggtattat ttttttacta
     4141 tgatcgctcg cattctaagt gaagtttggt tttcatgttt ttcaaaaaca tgattaatgt
     4201 atttttcata gctctgaaat tccgagttgc aagatggaca tacaacctta taattgttca
     4261 tgcatattaa actaacaata catagctaat taaattgtaa tggccgagaa gacattgatc
     4321 atatctctat tggcaaataa atcatcaaag agtttagaaa agacaaagac tagaacaata
     4381 gcacaactaa ctcagagtaa ttctactcgt agtactacta ctatccgtca tcctataggt
     4441 acagcaatgg acagatatat cagaagtata cgtgcaatga ataagagaac agcatatgaa
     4501 tagcatctgc gattatccaa ctttcaagat tatgtcatga ttgcttacaa gactatacac
     4561 tagatagcat aataacaaag accaaggaag gtttgtaaaa actacaatat ctgatcttgg
     4621 ctattctgac ttttctgaat ggttcgtagg acattctggc tctacatatt ggacaaaaaa
     4681 cgattcagag aaagcagagc tatttagaaa ggttgagccc tacgtgacat ttctcaatat
     4741 ccaagagttg gaaagataag gtactgatat acaaagcaag gtagaagagt tagaagatct
     4801 aaaccaatca ttgagaaatc gtgacaaaat gaaagatgat gctatattac agctatcgga
     4861 tcagattatg gctttgacaa caaagatgca agggattgag aggaagcagc agatgtaata
     4921 atagagtgac cttagtgctt atatattata gcatatttta ggaatttgac cctattaagc
     4981 aaataaaaaa ttgcaacatg gaaacgattg cgtgagatat tacgagcttt ctaaaaaagg
     5041 catttctctt aactccttga attcgtctac ggtagttact gtgttattgt ttggtgaatc
     5101 atcatgtcta ttttgtagta tggaagataa tgattgtgtt cccctcatta tcataatata
     5161 aagagacata ttttacttct tgttattccc tagaagctaa atgtaacact ttttcttgta
     5221 atataacgct gcgctgctgc tgccgagaat gattcttgtc attctttatc tttatgtcaa
     5281 ttgacaagtc gtcatcattc ttcctctttc tcttccgctt atcattacca tcttcttctc
     5341 ctactcctct tctagtagtt atttctatat acttatcaat tctctcgaga ataagcctag
     5401 cgtacgtctt tgtgttgtta gaacaacaag aaaaagatat cacagataga atattgttat
     5461 tatatgtata catttttact gcgtttacta tttgtcttat caaagatttt gcttccttaa
     5521 tttgaacttg cggatcattt acaaacaaag acaataaatt gccaatgact attactttag
     5581 caccagaaaa ttgctcaagt actttaggta ggtcattgat aattgtattt gccagttgat
     5641 acattgtaaa tgacctgctt acaactatgc tctgcaaagt ctttttaata ttcaatccat
     5701 actgtcttgc aaaatttaca cattgataaa tatctgaagt gtttccagca gcatcaacga
     5761 atattacttc aggagaatta aagccacctt gtatttttaa cattaaagca cggacacata
     5821 gtctgctaag aagtatattg ttggcatact tattattact attattatga tccgtagata
     5881 caatacatac ggtttcgcca gttgtaagtt ccagtacaga gtctatcttt tcgattccaa
     5941 aagtaagtcg attgctaaat tgttcataag cagtttgtat ttttggtggc ggtggtagta
     6001 ggcatagtga agaagatgat aaatccatgt tagtagtagt tgcagtacca tgaacttttt
     6061 ccttccttag tgtctttgaa attaaagaac cacaacatgg gcattcttct tgtgaattgg
     6121 agaatttgaa atcgatgtca aaatcatctc ttgttgtttt taaaagcgtg tcacactttg
     6181 agcaataata ctttattagc tgctgttgct gctgctgctg attagtatgt tgaatgctca
     6241 aagtaaggct tgttaccgta tagtacctaa taaatgcgat aagtactaca acaacatcaa
     6301 ggattattgc cactgccttt gatctaatgc ttcagggaac ggtggaatta ggtccagtta
     6361 cattaccagc cggaacaata ctatgtgtga gtgcaatagg tgcagtagta tcagagatca
     6421 ctccgggtgg cactgtgcta actgccactg tctttctaag aacagattta acaccagcag
     6481 gcactccacc aacatgtact gccggtcaag tagctatact ggcgtctgga acagtactgc
     6541 ctgcattgct tatagattcc ctacaataac aacagttagt gtctgtgcgc acttgtagtg
     6601 caatggaaat acaatatctt tcgcgttgat acttttgcag cttttggata acagaagcat
     6661 aatattccat tctatcatac ttgtgtctat tttagcaata acttatcctt tctaggcttt
     6721 atacagcgca tctttttcca taaatacgta agaggattat gttatctaga tgtggtttat
     6781 gagtcagggc actaataatg ttgattttac agttatcttt gatggcaata atctagatga
     6841 atggcaaatg gctggaaaag gaaaatttgt agttctgaga ggggaggagg aagaagagga
     6901 agaagaacaa agtattattt tacaaacaga aggaggaatg ggactactat ggtatactaa
     6961 aaagatgtat cgtaatttta tacttaaatt agattggaaa gtaaatcgca aatctgataa
     7021 ttctggtatt tttgtacggt ttcccaatcc cgataatgat ccaataattg cagtaaataa
     7081 tggttatgaa atccaaatag atgatttggc aatgcctgat ggaaatacta ttcatcagac
     7141 gggagcaatt tatggctttg cagctccttc ctattcttca aagcaaatag cttcaaaaga
     7201 tgcaggtcaa tggaatagat ttgaaattaa ggtagtggac caaagctatt ctgttatttt
     7261 aaacaatatt ctaataacag agtttgttgg cactagatca ttacaaggct ttattggctt
     7321 acaaaaccat gatagcaaat caaaagtctc atttaggaat atcatgataa aagagatatg
     7381 atgaaatact gcgtaataga ctagataata tatagcaatc ttgctttgat gattatgaat
     7441 gatttatgaa tgtcaacaag gccacatatg ctttagcagt agtgataatt tgaatacatg
     7501 tgcaatgaca ggatgcacca aatcgactat tgtaataagt cctatcgata tcaaatggtt
     7561 ttataaaatt agcaaggaag gattgtgtat taatagaaaa gatcttcaca agataattga
     7621 agacccaaat atgccaaaag atgttaaaaa acaaataaca aagattttcc cacatttatc
     7681 ataagagatt aacggtagaa agtcacaaag ctttgtcact tatgacgtta ctttgaaagg
     7741 tagtatagat ttgcccggtt gctgcactac catcctatta ataggattat taatatgtgc
     7801 agctaaaaga aatataggat ttaaaatata ttgtaaaggt tagagttcgt aaatatacac
     7861 taaataggag gtaatctaga cataggaact cttatttttg tcacctttct acaagcttgt
     7921 agtatattgc aacataataa tatacggctg gataatactg atttacagat tataagatta
     7981 cttgctagag actgtagaac tccttataga aacatatctt ctattgttgg aataacgaca
     8041 aatgctgtaa aggaaaggat tgttagaatg gtttctaatg gcataataca gaagtttgta
     8101 gtacttgtaa accccataat attcggatac gaaaaagaat gtattttgat cctaagacat
     8161 attgacaaaa taatt
//
LOCUS       DASQSJ010000291         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_353796, whole genome shotgun sequence.
ACCESSION   DASQSJ010000291 DASQSJ010000000
VERSION     DASQSJ010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353796"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(269..1570)
                     /locus_tag="VE223_05760"
     CDS             complement(269..1570)
                     /locus_tag="VE223_05760"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZC21131.1"
                     /translation="MTTITKTTRTFQELGLSGEIIRALKENGFKEPFPIQEAAIPLVL
                     KGVDVIGQAHTGTGKTAAFALPILNKIKIRRNGPIQALILVPTRELALQVTNEINKFA
                     KYTGIRTAAIYGGQSIGLQYNQLRRGIQIVVATPGRLIDHIKQDSIRLDNVKYVVLDE
                     ADRMLDMGFIDDIKFILFYVNEDRQTCLFSATMPSEIMRLAQEYMHDPKEVMLNQEEL
                     SLDTIEQSYIVIPEREKFKHLCNFIKKRDKKQTIVFAATRQRARRLIDELKQEGFKAI
                     AIHGDLSQKERDNAMYRFKRGTDDILVATDIAARGIDVPAVGHVINYDIPAEPLMYFH
                     RIGRTARAGATGKAISLVSHDRVEDFNRILRKTQQPIQRLNEEMGITVPTFKQRRYDR
                     HQRGRIYWHKTNRYRSHRRSSGNGNTRSSHREQRGNNRSNR"
     gene            1787..1981
                     /locus_tag="VE223_05765"
                     /pseudo
     CDS             1787..1981
                     /locus_tag="VE223_05765"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
     gene            complement(2031..>2265)
                     /locus_tag="VE223_05770"
     CDS             complement(2031..>2265)
                     /locus_tag="VE223_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21132.1"
                     /translation="PWTTGIEMLARSRFNKIEGCTILLSKLASNDGHPHLHAFYEWVN
                     PITDEGSGAYPFRTGITTIRIALADILEKIKRE"
BASE COUNT          593 a          462 c          389 g          821 t
ORIGIN      
        1 taactcaaga aaaaagaaga tttaacgttt tctgtattat acaggtgcgc ccctcttttg
       61 catcaacctt cacttagtta tctcaataaa tccatattat tatctatgaa attaattatg
      121 tgcaacattg ctttagcaaa actttctgtt tcacctccaa ttccccgtga agtccttaaa
      181 ttaagttatg ggaactttct ggtttgcaaa acctccataa ggttataatc gctttcgaaa
      241 atgtgatggt gactattacg gagaactact atctattgct acggttatta cctctctgct
      301 ctctatggct gctgcgtgtg tttccattac cactagatct acgatgactt ctgtatctat
      361 tagttttatg ccaataaata cgccctcttt gatgtctatc atatcgccgc tgtttgaaag
      421 tgggaacagt aatccccatc tcttcgttga gtctctgtat tggctgttgt gtcttcctca
      481 aaattctatt aaagtcctca accctatcat gtgatactaa tgatatggcc ttacctgtag
      541 caccagctcg agcagttctc ccaattctat gaaaatacat caagggttcg gctgggatat
      601 catagttgat aacatgtcca actgccggaa catcgattcc ccttgctgca atatcagttg
      661 ccactaatat gtcatcagtt cctctcttga atcggtacat tgcattgtct ctctcctttt
      721 gagaaaggtc gccatgaata gcgattgctt taaaaccttc ttgttttagc tcgtctataa
      781 gtcttcgtgc tctctgtctc gtagcagcaa aaacaattgt ttgcttctta tctctctttt
      841 taatgaaatt acaaaggtgt ttgaattttt ctctttctgg gatgacaata tatgattgct
      901 ctattgtatc aagacttagc tcttcttgat tcaacattac ttctttggga tcatgcatat
      961 attcctgagc taatctcatt atttctgatg gcatagtcgc ggagaatagg caggtctgtc
     1021 tgtcttcgtt tacataaaac aatatgaact ttatatcatc aataaatccc atatcgagca
     1081 ttctgtctgc ttcatcaagt actacatatt ttacattatc cagacgaatt gaatcctgtt
     1141 ttatatgatc tatcaacctt cctggtgttg caactactat ttgtatacct cttcttagct
     1201 gattatattg aagcccaata ctttgtccac catagattgc agcagttctt attccagtgt
     1261 attttgcaaa tttgttgatt tcgtttgtaa cctgcaaagc cagctctctt gtaggaacaa
     1321 gtatcaatgc ttgtatcgga ccatttcgtc taatctttat cttgtttaat attggcagcg
     1381 caaatgccgc agtcttacct gttcctgtgt gtgcctgacc tattacatcc acgcccttca
     1441 aaactaatgg tatagctgcc tcttgaattg gaaaaggctc tttgaatccg ttttctttga
     1501 gtgctctaat tatttctcca ctcagtccta actcttgaaa cgttcttgtt gttttcgtta
     1561 tagttgtcat ctctatattc tcattttatt gttacaaaag agcacggaag tttcagaggt
     1621 atcgtacaga tttctatttg cttacatgct acagttattc tcttgtcttt ttgtttttgt
     1681 gttatacaga tataagcctt tgtgctttat tcaattaaat acctaatttg cttgattatc
     1741 atgttgaaga gatagatgaa gaaagaataa ggcagagcta cagggtgttc tcaaacacat
     1801 tcctttggga agagttgcaa gtgcagacga ggtagcaacc gtagtagaat tcttggcatc
     1861 agataaagca agttatgtta caggtgcatc atactctgtc gatggcagta tgactttata
     1921 tcctagtttt ggagttactc ctgagcatga gactacagag ctgaatagta gctgtaccta
     1981 gcagtcattc tttgctcttt ttgtggctct tacataaaag aactggaaga ctattctctt
     2041 ttaatttttt caagtatgtc agctaatgct attcttattg ttgttatgcc tgttctaaac
     2101 ggatatgctc cagatccttc gtcagtaata ggatttaccc attcatagaa tgcatgtaaa
     2161 tgtggatggc catcattaga agcaagcttg gaaagtagaa tagtacatcc ttcaattttg
     2221 ttaaacctgc ttctagctag catctctatt cctgtagtcc aaggc
//
LOCUS       DASQSJ010000292         2063 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_353842, whole genome shotgun sequence.
ACCESSION   DASQSJ010000292 DASQSJ010000000
VERSION     DASQSJ010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353842"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VE223_05775"
     CDS             <1..271
                     /locus_tag="VE223_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21133.1"
                     /translation="PWTTGIEMLARSRFNKIEGCTILLSKLASNDGHPHLHAFYEWVN
                     PITDEGSGAYPFRTGITTIRIALADILEKVKMESPPTASDTSSMR"
     gene            complement(383..1243)
                     /gene="fabG"
                     /locus_tag="VE223_05780"
     CDS             complement(383..1243)
                     /gene="fabG"
                     /locus_tag="VE223_05780"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HZC21134.1"
                     /translation="MQKKVAIVTGSSKGIGKAIAIAFAKSKEYSAIVTNSRKIEEAQQ
                     VSNEIKKLHCKSIAIEADVSKENDCIRLIEETIKHFGRIDILVNNAGIQQDLPLTEIN
                     LEEWYKIIGVDLTGPFICTREAVKHMKNQKPKGGCIINISSVHQAIPKPHYVPYATSK
                     AGIEMMTKTLALELAKDNIRANIVAPGAIDTEMNIELRENKAELESVVERIPLGRVAN
                     ADEVANVVEFLASYKASYVTGASYFVDGGMTLYPSFGTTAEHDAKEQHRSNITSTIAT
                     KSKIQRKSKR"
     gene            complement(1496..1630)
                     /locus_tag="VE223_05785"
     CDS             complement(1496..1630)
                     /locus_tag="VE223_05785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21135.1"
                     /translation="MVESVASKTVLDPHPAATTGAGIIGVDDFVVTVFLFTLGYTFVM
                     "
BASE COUNT          656 a          390 c          330 g          687 t
ORIGIN      
        1 gccttggact acaggaatag agatgctagc tagaagcagg tttaacaaaa ttgaaggatg
       61 tactattcta ctttccaagc ttgcttctaa tgatggccat ccacatttac atgcattcta
      121 tgaatgggta aatcctatta cagacgaagg atctggagca tatccattta gaacaggcat
      181 aacaacaata agaatagcat tagctgacat actcgagaaa gttaaaatgg aatctcctcc
      241 tactgcctct gatacttcct caatgcgtta ggcgtgatgt gtagacgaag caataactat
      301 gctgatgttg attttagagt tttgcacttg tcctccagac aacaatgcct tcttttgaaa
      361 gcaagacttg ttaacctgat tactaccttt ttgattttct ttgtatttta cttttagtag
      421 caatagtact agtaatattg ctacggtgct gttctttagc atcatgttct gcagtagtac
      481 caaaactagg atacaaagtc ataccgccat caacaaaata cgatgcacca gttacataac
      541 tagccttata tgatgctaag aactccacaa cattggctac ctcgtctgca tttgcaactc
      601 gccccaaagg aattcgctca actacacttt ctagttctgc tttgttttct cttagttcga
      661 tattcatttc tgtatctata gctccaggag caactatgtt tgcccttata ttgtctttgg
      721 ctaattctag tgctaatgtc tttgtcatca tctcaatacc tgcctttgaa gtagcatatg
      781 gtacatagtg aggttttggt attgcctgat gaacagacga tatatttatt atgcaaccac
      841 ctttgggttt ttgatttttc atatgcttta ctgcttccct ggtacaaata aatggtccag
      901 taagatcaac tcctattatt ttgtaccatt cttctaagtt tatctcagtt aaaggcaaat
      961 cttgctgaat acctgcgtta ttgactagta tatctattct accaaagtgt ttgatagttt
     1021 cttcaattaa tctgatgcag tcattttcct ttgaaacatc agcttcaata gcaattgatt
     1081 tgcagtgcag ctttttaatc tcgttagaaa cttgttgtgc ttcttctatc tttctagaat
     1141 tagttactat tgcggaatat tcttttgact ttgcaaatgc tatcgctata gcttttccaa
     1201 tacctttact agacccagtt actattgcaa ccttcttttg cataaattat tgctcctatt
     1261 atatattaag aggtatgaaa tctttcttat aaagaaatac atatctaaaa aagagcggca
     1321 tattgtacga caacgtgtga aaaaaacaca gttaacaaaa taaaacgtgc tgtacctttt
     1381 aatttaccat ttcctcgtac tttaccgcat acataaacat atgtacaccc ctatacatta
     1441 ttgccaacaa taacctctcc tatgtatttt aagaagatgg ccagtaattt gggaactaca
     1501 tcacaaacgt gtatcccaag gtaaacaaaa atactgtaac gacaaaatca tcaacaccaa
     1561 taatacctgc tcctgttgtt gctgctggat gcgggtctaa cactgtcttt gatgcaacac
     1621 tttcaaccat tctttacaca taaaggatac aacagaccca gcttcatatc tctaaaatac
     1681 cttcatggta ttcgttgtaa tagtgatttt gatgtacttt ggtagaaatg gtatactgac
     1741 gaggtttcgt ttgagaaatt tttcaataca caagaacgct atagagatgc ggttaaaaag
     1801 caaataacaa aagaaagagg taccaaggag tttatttgca taaagaataa agtacaagcg
     1861 ttaataaaag aatacgaaga agataagacc aatgctatta aatgtataag agaagagttc
     1921 aaagaaactc ttgaaaagta tgcatttctt tctgatgtta ttggaataga atttcccttg
     1981 ctttttaagt aactatcgga gattttataa cataaatgaa tttacacaga tcaaaagcat
     2041 aactaaaaaa gcttgattat atc
//
LOCUS       DASQSJ010000293         3965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_234163, whole genome shotgun sequence.
ACCESSION   DASQSJ010000293 DASQSJ010000000
VERSION     DASQSJ010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234163"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1044
                     /locus_tag="VE223_05790"
     CDS             <1..1044
                     /locus_tag="VE223_05790"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HZC21136.1"
                     /translation="AHPLLSEDQRNPNSHHNKTSTNTTGYVFLYYTQAQTHTGDDITE
                     GKQPLGNRLYRYELIGNKLINPKLLLDLPAIPGAIGNGGKVVIGPDNNVYVTIGDVGI
                     NGHRTKAQNIQNGSDPDGTSGILRVNQDGHPVLPGILGNKYPLNLYYSYGMWNSFGLA
                     FDPLTKILWDTQIGLPFGDEINLVRPGFNSGYGKIDGIWLHGYNIDQTEKQHVASSFL
                     HPNDLSSFGGKGKYHPPLFTWFRKAVPTGITFLNSSKMGSRYRNDDMFVADVKNGNIY
                     HFKINPQRTGLLLPTGPLADGIANSSDSLQQIIFGKGFGGITDLKVSPYDGYLYVLTF
                     NQGTIYKIVPVNK"
     gene            1527..1991
                     /locus_tag="VE223_05795"
     CDS             1527..1991
                     /locus_tag="VE223_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HZC21137.1"
                     /translation="MIEERLNSLGVKLSDTQHTIGSFVPVVITGNLVFVSGQIPIEPG
                     SNSINANYKGKVGRDISLEDGQAAARLCIINGLSELKQALGSLDKIKKFVKVSGYVNC
                     DASFTGHAKVINGASDFIVDVFGEKGKHARVSVGASSLAFDSSVEVELIVEV"
     gene            complement(2766..3938)
                     /gene="priX"
                     /locus_tag="VE223_05800"
     CDS             complement(2766..3938)
                     /gene="priX"
                     /locus_tag="VE223_05800"
                     /inference="COORDINATES: protein motif:HMM:NF033412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase noncatalytic subunit PriX"
                     /protein_id="HZC21138.1"
                     /translation="MKNDDDNFPHNIHCTVEDGLDFILSHFQEPIFPRKIMTKQLGYQ
                     VEVFNKEEALEYFKSSNYEDCRINAYPSFTEYKGINRTPISFLMVDLDLKDFGGRGGV
                     GQQKYSLKRALNKALEKIKKERKEGEGEVGSIGGNPTVLWTGNGYHIYQPVSGPVLEE
                     YETFYEFTKFLDKDLTSMFIRFAEEYFTDYTADHLHNPTVKSCLLRIPGSPNTKCNPS
                     KDQYAEVKIIERWDGKRQSIQPLLQDFRRWLIQKRIDYIEELNKQEKKRTKFQMVVSQ
                     QSQERTNRVTKIKWIEKGILENPLPDNRKYIIWRILSPYLLNVKKMAKEESYSVIKDW
                     LDRCDNLEKLNFNAKTKIREGLRGASKGYLPISLEKLKEENKALYDIVIGKDDGVY"
BASE COUNT         1226 a          700 c          722 g         1317 t
ORIGIN      
        1 gctcatcctc tcctttctga agaccagaga aatcctaata gtcatcacaa taagacttcc
       61 actaatacta ctggatatgt tttcctatat tatactcaag cccagactca taccggtgat
      121 gatattacag aaggaaaaca accattgggt aatcggttat atagatatga attgattggt
      181 aataagttaa taaatccaaa attgctgtta gatctccctg caatccctgg agctataggt
      241 aatgggggta aagtcgttat cggacctgat aataatgtct atgttacaat aggcgatgtt
      301 ggtatcaatg ggcatcgcac taaagcacaa aacatccaga atggaagtga tcctgatgga
      361 acaagtggga tactcagagt aaatcaggat ggccatccag tactccccgg tatcttggga
      421 aataaatatc cattaaatct ttactattcc tatgggatgt ggaatagttt tgggcttgct
      481 tttgatccac taacaaaaat cctatgggat acacaaattg gtttgccatt tggcgatgaa
      541 atcaatctag ttaggccagg atttaatagc ggttatggta agatcgatgg catatggtta
      601 catggctata atatagacca aactgagaag cagcatgttg cctcctcctt tcttcatcca
      661 aatgatttat cgagttttgg tggaaaagga aaatatcatc ctccattatt tacatggttt
      721 aggaaagcgg ttccgactgg aatcacattc cttaattcta gcaagatggg aagtcgttat
      781 agaaatgatg atatgtttgt tgccgatgtc aaaaatggaa atatttacca ctttaaaata
      841 aatccacaaa gaacaggatt acttcttcca accggtccac ttgcagatgg gattgcgaat
      901 agttctgatt ctcttcaaca aataatattt ggaaaaggct ttggtggtat tacagatctt
      961 aaggtaagcc cgtatgatgg ctatttgtat gtactaacgt ttaatcaagg gacaatatat
     1021 aaaatagttc ctgttaacaa gtagtaagca acgttgtacc ttcaaataaa gaattatctc
     1081 agatattggc cttgtgtcat ctgtattgtt atatagttga tttatttgtt ccaatggtct
     1141 tatcaatatc tatgttgtct tcgtctgcat tagttgtttg actaatcatt catctgattt
     1201 agtcaacgat ataaaaaagc gcttattgtg ccaagtgaga ctctctcaat agggcagtat
     1261 tacatatgct agtttgctgg gtgatacatt gaattaattc taaagagtta ctatccggta
     1321 cttctaagac ccttcatttt tggttcttat tgaatgaaca tttgtatcat gtgtcattat
     1381 attttgattt aaagcaggta cgagtagcta tgaagcagaa ggtaaaaaca atactttgct
     1441 cttcattatt aacaacatac ttgtatacaa gcaccagcca gtgaggaata gaaatgcaat
     1501 aatatgacat tgtatgcaaa attctaatga tagaagaaag gctaaattct ttaggagtaa
     1561 aattatctga tacacagcat actattggct cttttgttcc agttgttatc acaggcaatc
     1621 ttgtctttgt atctggtcag atcccaatag aaccaggttc gaattccata aatgcaaact
     1681 ataaaggaaa agtaggcaga gatatttcgc tagaggatgg tcaggctgcg gcaaggcttt
     1741 gcattataaa tgggctctca gaattaaaac aggcactagg cagccttgat aaaataaaaa
     1801 aatttgttaa agtttctggt tatgtcaatt gtgatgcgtc ttttactgga catgccaagg
     1861 ttattaatgg cgcctcagat tttatagtgg atgtttttgg tgaaaaagga aagcatgcca
     1921 gagtctcggt tggagcaagt agcttggctt ttgacagttc ggtagaagta gagctcatag
     1981 tagaagtatg acttttacat aagggattat cgacatagat gatctcctgt aagacgacgc
     2041 tacagataaa ggagaagcac ttataaaaat caagtggaac gatgtaataa agaaagaagc
     2101 aagaggaatt aataatgctg acttaggaga ggttcataca gtagaatctg acaacgtcgt
     2161 taccgaaata agcattacag aacatgatag gttctatttg ccaaagggtc ttgcggaaag
     2221 atttgacggc aaaaccctat ggttcaaaat aacagaggaa gaggcaaaca gtaaatacag
     2281 aaaggattaa agttagcaga gataatcgag ataggttatt ttaggatcta tgcttcgatt
     2341 tatatttttc atcaagactt gatatatatc acgatacttt tctaatagat ctgaccatct
     2401 tcatcaattt atactaccac ttgaagaaaa ggctctggca caactcggaa ataggtttaa
     2461 agatctaaaa agtcggcttg acctgaatta aaaaagatta gactagtcag caacataagt
     2521 attgaacgtg ataacaaaaa agaaatgcaa aaaagtcaca cgttaaatag aaaatagata
     2581 cttgagaaag catccataca aattatatca gatctatctt cggaattttc tcctaatgga
     2641 gaaaattcaa agtcggtgtt tgcaaacaga atattgatgt ggctcttctg ctccttcaca
     2701 gcaacatata acctatcaag atctactccg tttgaccaaa tgatttttgt tttgtttacg
     2761 atggttcaat acacaccatc atccttgcct ataactatat catacaatgc tttgttttct
     2821 tcctttagct tctctaaact tattggaaga taacctttac ttgcacctct aagtccttct
     2881 cttatctttg ttttggcatt gaagttcagc ttttctaaat tatcacatct atccagccaa
     2941 tccttaatta cagaataaga ttcttccttt gccatctttt ttacattcaa tagatatggt
     3001 gaaagtattc tccagatgat gtattttctg ttatctggaa gtgggttttc gagtattccc
     3061 ttctctatcc attttatttt ggtaactctg tttgtacgtt cttgactttg ttgggaaacg
     3121 accatctgaa atttagtacg ctttttctct tgtttattta actcttctat gtagtcaatt
     3181 ctcttttgaa taagccacct tctaaaatct tgcaggagag gttgaataga ctgccttttg
     3241 ccatcccatc tttctattat ctttacctct gcatattggt ctttgcttgg attgcatttt
     3301 gtgtttgggc ttcctggaat cctcagtaaa catgacttta cggttggatt gtgtaaatgg
     3361 tcagcagtat aatctgtaaa atattcctcg gcaaatcgaa taaacatact ggtcaagtcc
     3421 ttgtctaaga atttcgtaaa ttcgtagaat gtctcatatt cttctaacac aggtccacta
     3481 acaggctggt atatgtgata accattacct gtccataaca cggttggatt tccacctatg
     3541 cttcctactt ctccttctcc ttcttttctt tcttttttga ttttctctaa ggctttgttt
     3601 aatgctcttt ttaatgaata tttttgttgt cccactcctc ctcgtccacc aaagtccttc
     3661 aagtctaaat ctaccattag aaaacttatg ggtgttctgt tgatgccttt gtattcagta
     3721 aaagaaggat aggcatttat tcggcaatct tcatagtttg aacttttaaa atattctaaa
     3781 gcttcttctt tattgaatac ctctacttga tagcccaatt gttttgtcat aattttcctt
     3841 gggaatatcg gctcttggaa atgactcaag ataaagtcaa gaccatcttc gaccgtgcaa
     3901 tgaatattgt gaggaaaatt gtcatcatca ttcttcatac gtcaatcaca gtttccttct
     3961 aagca
//
LOCUS       DASQSJ010000294         2519 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_153838, whole genome shotgun sequence.
ACCESSION   DASQSJ010000294 DASQSJ010000000
VERSION     DASQSJ010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153838"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..206
                     /locus_tag="VE223_05805"
     CDS             <1..206
                     /locus_tag="VE223_05805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21139.1"
                     /translation="QMNLGNEMLQGSWRRKVCNNILKQQNQNQNHAELAYILEMPKEL
                     GETQIEISIEKEASYIVSEEVHK"
     gene            285..1265
                     /locus_tag="VE223_05810"
     CDS             285..1265
                     /locus_tag="VE223_05810"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HZC21140.1"
                     /translation="MINKIMSEKKIMHTNNALVSISKEIENIADKVSQSVVSVRSRTR
                     GNGSGVIWDADGHIVTCNHIVRKLDKVEVSLNGDSMSYLAKVVGNDPYSDIAVLKIET
                     NDIDNIPLKPIEIGDSENLKAGQFVLALANPYGEYSSITQGIITSQRRSLGVGSWWWA
                     SMTDNIVVSDARLNPGYSGGPLVDVEGKMIGLNVAYISSRGIAIRVNKVTNIADQLAR
                     DGVIKKAYIGVVTDEISLPHEIGTQLEPSQEKGLLIISVENNTAAKEAGLLIGDIIVK
                     FDNDPITNILDLRKQLLKQDVIGKPVKITIIRSEKKSELTVTPRQAPRSS"
     gene            1295..1543
                     /locus_tag="VE223_05815"
     CDS             1295..1543
                     /locus_tag="VE223_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21141.1"
                     /translation="MRYDTVNEDLIVNAVERVGKAVVNIATVRTTHDQLFRVFPVEGV
                     GSGVIINEKCHVLTNNHVVDEAHRLKVRSRMEVCSMEK"
     gene            1525..2238
                     /locus_tag="VE223_05820"
     CDS             1525..2238
                     /locus_tag="VE223_05820"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HZC21142.1"
                     /translation="MFDGKVIGKDESTDLAIVKLDSTETLPFAELGNSDDLKIGQIVI
                     AIGNPFALAGGPTVTAGILSSLNRKIQFENGVLELVQTDAAINPGNSGGPLVNTRGEI
                     VAINTAKMPYAHGIGFAVPINIAKTVMAELIQNGRIINRPWIGISYVKITRQLAQYYR
                     LPITEGVLIAHVESDSPADDVGLRKGDIIEAVDGKRIDDSTAISLNVRKKAITDKVTM
                     TINRYGRRFEVPIQLRARP"
BASE COUNT          918 a          430 c          522 g          649 t
ORIGIN      
        1 ttcagatgaa tttaggaaat gagatgctgc aaggcagttg gagaaggaaa gtatgcaata
       61 atatactaaa acagcaaaat caaaatcaaa atcatgcaga gcttgcatac attcttgaaa
      121 tgccaaagga actaggagaa actcaaatag aaataagtat agaaaaagaa gcaagttata
      181 ttgtatcgga ggaagttcat aaataataac tgccgagtac aaatccagtg tgactaagtt
      241 acatcattct cagtcaataa atagcgtatc tgaccatata tagtatgatc aataaaataa
      301 tgagcgaaaa aaagattatg catactaaca atgcattagt ttcaatatcc aaggaaatag
      361 aaaatatagc tgataaggta tcacaatcgg tggtaagtgt acgttcaaga actaggggaa
      421 atggttcagg agttatttgg gacgctgatg gtcatatagt gacatgcaac catatagtca
      481 gaaaactaga caaagttgaa gttagtctca atggcgacag catgtcctat ctagccaagg
      541 ttgtaggtaa cgatccctat tcagatatcg cagtcctgaa aattgaaacc aatgatattg
      601 ataacattcc cttaaaacca atagagattg gtgattctga aaatctgaaa gcaggacaat
      661 ttgttctcgc tctcgctaat ccttatgggg aatattctag catcacacaa ggaataatca
      721 caagccaaag aagatcgctt ggagtaggat cgtggtggtg ggcaagcatg acagataata
      781 tagttgttag tgatgctcgt ctgaacccag gatattccgg aggaccgtta gttgacgtag
      841 aaggaaagat gataggatta aacgtagcct atatttcatc tcgaggaatt gcaattagag
      901 taaataaagt aacaaatatc gcagatcaac tcgcaagaga tggagtaatt aagaaagcat
      961 acattggcgt tgtcacagat gaaatttctc ttcctcatga aataggaacg cagctagagc
     1021 caagtcaaga aaaaggcctc ttgatcattt cagtcgaaaa taacacagct gcaaaggaag
     1081 caggtctctt aataggagat atcattgtaa agtttgataa cgatcctatc acaaatatac
     1141 ttgacctaag aaaacaactc ctaaagcaag atgtcatcgg aaaacccgtg aagattacaa
     1201 taataagaag tgaaaaaaag agtgagctca cagttactcc tcgacaagcg cctagatcca
     1261 gttaacagca ctaagggtca aacaaaccag tcgcatgagg tatgataccg ttaacgaaga
     1321 tctaattgtt aatgctgttg aaagggtagg taaagctgtt gtaaacattg caactgtaag
     1381 aacaacccat gaccaattat tccgtgtttt tccagtcgaa ggcgttggtt cgggtgttat
     1441 tatcaacgag aaatgtcatg tacttaccaa caatcatgtt gttgacgaag cccacagact
     1501 aaaggtacgc tcacggatgg aagtatgttc gatggaaaag taataggcaa ggatgagagt
     1561 actgacttgg ccatagtaaa actagattcg acagaaacac ttcccttcgc tgaattggga
     1621 aattctgatg atttgaagat aggccaaata gtgattgcaa taggtaatcc atttgcctta
     1681 gctggagggc caactgtaac ggctggaatt ctaagctcat taaacagaaa aattcaattt
     1741 gaaaatggag tgctcgaatt ggttcaaact gatgcagcaa taaatccggg taactctggt
     1801 ggacctcttg taaatacccg aggtgagatt gtagcaatta acacagcaaa gatgccatac
     1861 gcacacggta tcggatttgc agtaccaatc aatattgcta aaacagtgat ggcagaacta
     1921 atacaaaatg gaagaataat aaataggcca tggatcggaa tatcgtacgt aaaaataaca
     1981 agacaattag ctcaatatta cagattgcca attacagaag gtgtgttaat agcacacgta
     2041 gaatcagaca gtccagctga tgatgtagga ttgagaaagg gagatataat tgaagcagta
     2101 gatggtaaaa gaatagatga ttctacggca atttcactta atgtaagaaa gaaggccata
     2161 acggacaagg taacgatgac tattaacaga tatggaagac gctttgaagt tccaatacag
     2221 cttcgtgcac gaccataact cttattttta tatatgtttt gcaggttaca actagttaaa
     2281 caattattgt gcttcctaac atatgtgaca atattcaaaa tataaaacga gactagaaaa
     2341 catggtcctc acctcatcaa tgtgtttcta caaagattaa ttaaatccga gagcatttca
     2401 atatcgcaac gttatctatt attgctacca tcgtcgttca tctttacttc ggctctggct
     2461 caggacagaa acttgtgtcc attatgctat cataaaaaca tagagtccaa tccttgtcg
//
LOCUS       DASQSJ010000295         6404 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_234241, whole genome shotgun sequence.
ACCESSION   DASQSJ010000295 DASQSJ010000000
VERSION     DASQSJ010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6404)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6404)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6404
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234241"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..429
                     /locus_tag="VE223_05825"
     CDS             109..429
                     /locus_tag="VE223_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HZC21143.1"
                     /translation="MSEAQPQQNQQIQKEGTHDAIYIGKKPLMAYVTSTLIQLANQPS
                     VTIKARGLSIGRAVDVSQIILKRMENAGYKIDDVRIGSETVQSEDGRTRNVSTIEIEI
                     KRSS"
     gene            479..1117
                     /locus_tag="VE223_05830"
     CDS             479..1117
                     /locus_tag="VE223_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21144.1"
                     /translation="MGRNPAAIYLGHLNPMTKAHEDVISFLQKEYNLYVFPVRFLKDN
                     VEINTRSFPFPYKIRKAMIESVLNSNDNVKILPDYTFLSPFIKYLPPIVSPYSWMLRN
                     QIVKNIQEETFIAYTGDRIERLALKIYRLHPIKAKRLKISSSAVKNMLYHQVIQGSEE
                     LGRQGEAHWQDKVPEKVVDLIIDNWEIVEKFAKSPDQTFKTMGIKFPKDGFI"
     gene            1158..2075
                     /locus_tag="VE223_05835"
     CDS             1158..2075
                     /locus_tag="VE223_05835"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HZC21145.1"
                     /translation="MRTKGAEFIWFDGKFVKWEDATIPVMSHVLHYGTSVFEGIRGYF
                     ARNNLYIFRLKEHMERLHRSARVYSFALNYSTKDLCNATIDLLRRISIRESCYIRPLT
                     FVGLHGIDLNITRDSPTHTVIIIFPFAKYFKVEGINACVSSWRRIHDTFTPPMAKAAG
                     NYLNSILATQESRRNGYDESILLDAEGNVSEAAGENIFIVRDKKIYTPFIADSVLEGI
                     TRDSTITIARNMGYELTERPIVRTELYMADELFLTGTAAEIIAVTNVDGIQIGDGKEG
                     PVTRSIREMYTKIASAEIEEYLGWLTPVW"
     gene            2069..3031
                     /locus_tag="VE223_05840"
     CDS             2069..3031
                     /locus_tag="VE223_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HZC21146.1"
                     /translation="MVDIDSKLRLAIIGVGGWGKNHARVLHGFGVLSAVCDMDAQRTK
                     EIAERYNTKSYHSIDDLLNTEKLDACLVCTPTKTHSVVAKKIMERGINVFIEKPLSFS
                     SRECEEMVEISQKKKVILTSGYIERFNPAVQDVKRLIDSKRYGDLLMMEFHRENRMPL
                     HVKDVGIIYDTSVHDIDTAMFLFNSRPHVVFARAGKKFHMYEDFATIMLGFNDQRVAI
                     IASNWITPQRVRRFSAVCTDGIIMGDFISQEIKIDHGEATIIPRRQQFQEPLTLELKN
                     FLDAIEGKIIGPVVSAADATNVTKVAEAALLSNNTGSPVYLDLK"
     gene            3036..3335
                     /locus_tag="VE223_05845"
     CDS             3036..3335
                     /locus_tag="VE223_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HZC21147.1"
                     /translation="MRKSMLDLLACPIDKHYPLELFEINIKQGDNNNNKTDDIIISEG
                     ILFCAKCYRFYPIIDEIPVLLPDELREKQKDIDFLQKWHDKIPPKVINQGNPWHI"
     gene            3339..3842
                     /locus_tag="VE223_05850"
     CDS             3339..3842
                     /locus_tag="VE223_05850"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HZC21148.1"
                     /translation="MANKDFSNSPVINYISSTARLGKGVKIWHFAYIGDETEIKDNVM
                     VGSLTHIDYKVRVGENTRIEGSVYIPPLTIIGRNVFIGPGATFTNDPYPMSPKMSGVI
                     VEDGVIIGSRAVIKPGVRIGQNSVVAMAAVVTKDIPRDVVVMGHPARIKYSREEYNKK
                     QSAWNSS"
     gene            complement(3999..5162)
                     /locus_tag="VE223_05855"
     CDS             complement(3999..5162)
                     /locus_tag="VE223_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21149.1"
                     /translation="MSAGQSSTAVYGLSTEGYRIASSIAVKGSKVSLIDESARMAIRL
                     KPDIARTYPDVSSLIEDEPLLALEPIDIAIRDASYVFFAPRIRKVGQDVKSDVTSKFR
                     DAIRMLKKGTSVIYALPTGIGGNNENITMIEHVTGLSVGKDVFYYYMPQCNASAASSS
                     EILVGSFKSKQDVQIPKMLYEPDVRRKLNFIDIISAEFVHSIKTLEHYTSVASVLEIC
                     KHVHNSEISSELMHHAFRDIYIDDIANGLYDLRAIGSSLGGAGPLMYLVNGTIKAIEG
                     YVKHIIDEIRGMLKKRDLKASRTKVSIAWTLDPNEMRGDKIELLSSLETKLKDYIGDV
                     DRQQGSGLDLYSTDKTMIILACTKNDFAKVFSKNKQISEGILMKANPACETIG"
     gene            5269..6339
                     /locus_tag="VE223_05860"
     CDS             5269..6339
                     /locus_tag="VE223_05860"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HZC21150.1"
                     /translation="MKFWFDILTPKQVMFFKPIVDSLRQHGHELLCTSRDYREAVQLA
                     RIKHLDLKIIGRHGGAGKYEKLCESANRIFKLADIIKQFEPDTAVTFSSPEGSRVAFG
                     LGIKHIGLNDSPHADSVAKLTIPLMNHLFCPWVIPYSAWYRFGICKNRITKYRALDPA
                     AWLKRTAISSIPISSTIVNKYNIDRRKKTVLIRLEEAKASYIADKKIGNKIFMIDALV
                     KDLSESTNIIILCRYEDQIKEIAERYEGRAHVIQRVIDGTLLISLANVFIGAGGTMTA
                     EASLLGKPTISIAPIQFYVEKYLLSSGLVQRACSPTDLVRLTKKMIIDNNYAKKQKKK
                     AKLILDEMDDPVDRILPFLEMS"
BASE COUNT         2142 a         1161 c         1230 g         1871 t
ORIGIN      
        1 ctatggcatc cagacctaat tttaccagac aggtagaaac ctatagaaag tcacttgttg
       61 tttaaccatc ttctagattt aaattatcct aaagcaatta catcttcaat gtcggaagca
      121 caaccacaac agaatcaaca aatacagaaa gaaggaactc atgacgcaat atacatagga
      181 aagaaacctc ttatggcata cgtcacatcg acactcattc aactggccaa ccagccttcg
      241 gtgacaatta aggcaagagg tttgagcatc ggaagagcag tagacgtttc ccagatcatc
      301 ctaaagagaa tggagaatgc aggttacaag atagatgatg taagaattgg ctccgaaact
      361 gttcagtcag aggatggcag aacacgaaac gtgtctacga ttgaaatcga aataaagaga
      421 agctcataag ggctctccga tactttttgt tatctgtaaa gctcttttgg tttaaaaaat
      481 gggaagaaat cctgctgcca tctacctcgg acacttgaat ccaatgacaa aggctcatga
      541 ggatgtcatc tctttcctgc aaaaagaata taacttgtat gttttccctg tgagattttt
      601 gaaggacaat gtagagatca acacaaggag cttcccattt ccttataaaa ttagaaaagc
      661 tatgatagaa tctgtcctta atagcaatga taacgttaaa attttgcccg actacacatt
      721 tctctctcct tttataaaat atttgccacc catagtttca ccatattcat ggatgttaag
      781 aaaccaaata gtcaaaaata ttcaggaaga aaccttcatt gcgtatactg gtgacagaat
      841 agaaaggctt gcattaaaaa tatatagact tcatcccatc aaagcaaagc ggcttaaaat
      901 ttcatcttct gcagtaaaaa acatgcttta tcatcaggta attcaaggaa gtgaagagtt
      961 aggaaggcaa ggagaagccc attggcaaga caaagttcct gaaaaagttg ttgatctgat
     1021 tatagataac tgggaaattg tagaaaaatt cgcaaaatct cctgatcaga catttaaaac
     1081 aatgggaata aaatttccca aagacggctt tatctagttt agaagatttt tataagccac
     1141 aaagcgactt gctttaaatg agaacaaaag gtgcagaatt catctggttc gacggtaaat
     1201 ttgtaaaatg ggaagatgca accattcctg ttatgagtca cgttttacac tatggtacat
     1261 cagtctttga aggtattcgt ggctactttg caagaaataa cctttacata tttagattga
     1321 aagaacatat ggaaagactt catcgatctg caagagttta ttcatttgct ttaaattatt
     1381 ccacaaagga tctatgcaat gctacaatag atttactaag aaggatcagc atcagggaat
     1441 catgctatat aaggcctttg acatttgtag ggttgcatgg catagatctt aatattacaa
     1501 gggattctcc tactcacaca gtaatcataa tttttccttt cgctaaatat tttaaagtag
     1561 aagggatcaa cgcatgtgtt tcttcctggc gtagaattca tgatacattt acaccaccca
     1621 tggctaaagc tgctggaaac tatcttaatt ctatactggc aacacaagaa agcagacgaa
     1681 atggatatga cgaatcgatc ttgcttgacg ctgaaggcaa cgtcagcgaa gcagctggag
     1741 aaaatatctt tatagtcaga gacaagaaga tttacacacc gtttattgca gattcagtat
     1801 tggaaggaat tacgcgggat agtacgataa ctattgcaag gaatatggga tatgaattga
     1861 ctgagcgtcc cattgtccga actgagttat acatggcaga tgaattattt ctaacaggaa
     1921 cagctgctga aattattgct gttacaaatg tcgatggcat tcagataggc gacggaaaag
     1981 aaggaccggt aacgagaagt atccgagaaa tgtatacaaa aattgcatct gcagaaatag
     2041 aagaatacct tggctggtta actccagtat ggtagacata gactccaagc taaggctggc
     2101 catcataggt gtaggtggat ggggtaaaaa ccatgccaga gtcctccatg gctttggtgt
     2161 cctctcagct gtctgcgata tggatgcaca gcgtactaaa gaaatagctg aaagatataa
     2221 cacaaagtca tatcattcca ttgatgattt gctcaataca gaaaagttgg atgcttgtct
     2281 agtatgcact cctaccaaaa ctcactcggt agttgcaaaa aaaataatgg aaaggggaat
     2341 aaatgtcttc attgaaaaac cgctttcttt ctcttctaga gagtgtgaag agatggtgga
     2401 gatatcccag aagaaaaaag tgattttaac atctggttat atagagagat ttaatcctgc
     2461 agttcaggat gttaagcgac ttatagatag caaaaggtat ggagatttat tgatgatgga
     2521 atttcataga gaaaacagaa tgccattgca tgtcaaggat gttggtataa tttatgatac
     2581 atcagtccat gacattgaca cagcaatgtt tctattcaat agcagaccac atgttgtttt
     2641 tgcacgcgct ggtaagaaat ttcacatgta tgaagacttt gcgactatca tgcttggatt
     2701 taatgaccaa agggtagcga ttattgcatc aaattggatt accccgcaaa gagttagaag
     2761 atttagtgct gtttgtactg atggaattat tatgggcgat tttatcagtc aagaaatcaa
     2821 aatagatcat ggagaagcca caattatccc gcgtcgacag caatttcagg agccccttac
     2881 attagaatta aaaaattttc tagacgccat agaaggaaag ataatagggc ctgtggtatc
     2941 ggcagctgat gccactaacg ttaccaaagt tgctgaagca gcacttttat ctaacaatac
     3001 tggatctcca gtttacctgg atctgaaata gacaaatgag aaaatccatg ctagaccttc
     3061 ttgcatgccc tattgataag cactatccgc tagaattgtt tgaaataaat ataaaacagg
     3121 gagacaacaa taataataaa accgacgaca tcataataag cgaaggaatt ttattctgtg
     3181 ccaaatgtta ccggttctat ccaattattg atgagatacc agttttatta cctgatgaac
     3241 ttcgtgaaaa acaaaaggat attgactttt tgcaaaaatg gcatgataaa atcccaccta
     3301 aagttataaa tcaaggtaac ccgtggcaca tctgaacaat ggcaaacaaa gatttttcta
     3361 attcaccagt aataaattat atttcatcta ctgcaagact cggcaaaggc gtaaagattt
     3421 ggcactttgc atatattgga gatgaaactg aaatcaaaga taatgtaatg gttggctccc
     3481 ttacacatat cgattataaa gtaagagttg gtgaaaacac aaggatagaa ggttcggtat
     3541 atattcctcc actgacgata attggcagga atgttttcat tggtccaggt gctactttta
     3601 cgaacgatcc gtatcctatg agtccaaaaa tgtctggagt tatagtagag gacggagtta
     3661 tcatcggtag cagggcagtt ataaaaccag gagtcagaat agggcaaaat agtgtggtcg
     3721 caatggctgc agtagtaaca aaagatattc cacgtgatgt cgttgtaatg ggacatcctg
     3781 ctagaataaa atattccagg gaggagtata acaagaaaca atctgcatgg aattcatctt
     3841 gaagaaccaa ttctgatgat attatgttat tcctagagtt aatttaaata aaatatataa
     3901 aaaagtccaa acatgattgt tacatgtagt agattatcaa acaaaatata tatctatata
     3961 tcccgaattc tatagtaatg tacgattttt cttcccaatc aaccaatagt ttcacaggca
     4021 ggatttgctt tcattagaat cccttccgat atttgtttat ttttagaaaa aaccttggca
     4081 aagtcgttct tagtacatgc aagaattatc attgttttat ctgtagaata tagatcaaga
     4141 ccagaacctt gttggcggtc cacatctcca atatagtctt ttaattttgt ttcaagtgaa
     4201 gatagtagct ctattttgtc tcccctcatt tcgttaggat ctaacgtcca cgcaatagac
     4261 acttttgttc gacttgcctt taggtcacgt ttcttgagca ttcccctgat ttcatctatg
     4321 atgtgtttga catagccttc tatagctttg atagtgccat taacaagata catcaatggt
     4381 cctgctccac caagtgaaga gcctatggct ctaagatcgt acaagccatt tgctatatca
     4441 tctatataaa tatctctaaa agcatggtgc attaattcac tacttatctc actattatgg
     4501 acatgtttac agatttccaa gacgctcgcc acactagtgt aatgttctaa tgttttgatg
     4561 gaatgtacaa attctgctga tattatatca ataaaattca gcttccgtct aacgtcaggt
     4621 tcgtatagca ttttaggtat ttgtacatcc tgctttgatt tgaaagatcc cactaggatt
     4681 tctgaactag aagcggcact tgcgttacat tggggcatgt aataatagaa aacatcctta
     4741 ccaactgaca aacctgttac atgctctatc attgtaatgt tttcattatt acctccgatg
     4801 cctgtaggca aagcataaat caccgacgtt ccttttttca acattctgat cgcatctctg
     4861 aactttgatg taacatcact ttttacatct tgtccaactt ttctgatcct tggtgcgaaa
     4921 aagacatagg atgcatccct aattgcgata tcaattggct caagagcaag taatggctca
     4981 tcctctatca gggaactaac atcaggatat gtacgcgcaa tatctggctt taatcttatg
     5041 gccattcgag cagattcgtc aattaatgaa acttttgatc ctttgactgc aatagaagat
     5101 gcaattctgt atccttctgt gcttaatcca tatacagctg ttgatgactg tccagcgctc
     5161 aaagttaatg agtctccttg ctaatcatct ctaataacct attcccacgc tatctaaaaa
     5221 gggttaaaga aaagtttttt tctatcaaaa attgccgtgt taatactatt gaaattctgg
     5281 tttgatattt taacaccaaa gcaggtaatg ttttttaaac ctattgtaga ttcacttcgt
     5341 cagcatggcc acgaattact ttgcacatct agggattaca gagaggcagt ccaacttgca
     5401 agaatcaagc accttgatct aaaaattatt ggaaggcatg gaggagctgg gaaatatgaa
     5461 aagctgtgtg aaagtgcaaa tagaatattt aaattagctg acataatcaa acaatttgaa
     5521 cctgatacag cagttacgtt ttcatctcct gaagggtcaa gagttgcatt cggtcttggg
     5581 ataaaacata ttggactgaa tgactcgcct catgcggact cggtcgcaaa actcacaatc
     5641 cctctaatga atcacctttt ctgtccttgg gttattccgt attctgcttg gtatagattt
     5701 ggaatttgca agaataggat aacaaaatat cgagcacttg atcctgctgc atggctcaaa
     5761 agaactgcaa tatcatctat tccaatatcc tctactatag ttaataaata caacatagat
     5821 agacgcaaaa agactgtctt gataagactc gaagaagcaa aagcttccta tattgcagac
     5881 aagaagatag gaaacaaaat ttttatgatt gatgcgcttg tgaaagattt gtctgaatcg
     5941 accaatataa tcatcctttg cagatatgaa gaccagataa aggaaattgc agaaaggtac
     6001 gaagggaggg cccatgtaat acagcgcgta attgatggta cgttgttaat ctctttggct
     6061 aatgtattta taggagctgg aggtaccatg acagcagagg catctctcct tggaaagcct
     6121 actatttcta ttgctccaat ccaattttat gttgaaaaat atctgctatc atcaggtcta
     6181 gtacaaagag cctgtagccc caccgacctt gttcgattga caaagaagat gatcattgat
     6241 aataattacg ccaaaaaaca gaaaaagaaa gccaagctca ttcttgatga gatggatgat
     6301 cctgtagaca ggatattacc atttttagaa atgtcgtgag taagattata aagatagtaa
     6361 aatatatacg gaaatacgcc cggaagcccg gtggaggaaa agtt
//
LOCUS       DASQSJ010000296         2269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_354359, whole genome shotgun sequence.
ACCESSION   DASQSJ010000296 DASQSJ010000000
VERSION     DASQSJ010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354359"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            463..1455
                     /locus_tag="VE223_05865"
     CDS             463..1455
                     /locus_tag="VE223_05865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21151.1"
                     /translation="MNGKHDITPALLYHRFVIFTLTVLVVIAVPLLFFINTSGAIDQQ
                     LLQKATAKGVTNSSSSSNTTDHTASQNVESLVRSILSPVPLSSSAVNESRGNRTNESS
                     AGTGHSEGVIAEKNTANLVSRTAAGTTPIKTTTIVTTKNGNTTTNSSTTPLQPSLSSL
                     RSTVNQPKSSIIKQGNNIQNTSVRNVHTLLLSHQIIPPKNFILLYSTSSYKIFNGYLA
                     AKIPCSANSVPSLQILVGHSPYLKPVQLHLVKEFSKPGDICMYDVDIGSETVTAITHG
                     NDSIDKGGGPPPPPQQQQDNTLTNTVLVLSNPTDSTVTLPNTSTVIIGVNEIGS"
     gene            complement(1529..>2269)
                     /locus_tag="VE223_05870"
     CDS             complement(1529..>2269)
                     /locus_tag="VE223_05870"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC21152.1"
                     /translation="DSIRVLFILYSALGLGVLGIYSSLSKKIEVQENTNTNTNNTNNI
                     PKALKQTLSPKSKEVIGKLSGLFAIDSFAGGFVIQSVISLWFFTKFGVDLTTISYIFS
                     IAGVLTAFSFIVAAKIADKIGLVNTMVFTHIPSNILLILVAFAPTLLLAIIFYLARMA
                     LSQMDVPTRQSYIVAVVKDEERTAAAGITNISRNIAQSISPSLAGYIFQSLSFLSAPF
                     VLGGVMKIAYDVLLYLNFRNMKAPGEKQ"
BASE COUNT          780 a          429 c          379 g          681 t
ORIGIN      
        1 aagcgttgta tattcagaag agagtctttc tttcttccta gaatcaatgt tatttttcat
       61 ggcaatctat aaaatttatg attaatcctg gcattgcaat ccttaatttg ctccctgact
      121 agatattgtc aacattgtat ataactcggc tcatgacagc cgtgaatgta tctttcttat
      181 ccttgctatg cttttcttga gtttctttga ttggtgatat gaatagttta tttttacatt
      241 gagtttgcaa cgaatactag tgctataaat aagcaatagg ctcggtattt acacgatatc
      301 atgtaaatat cagaataaac agttgaaaaa tgtctcttat aaatgaaaat cttaatcccc
      361 tgttggatgg tttttttgag tgggattgga ttacaaacat tctctaaatg ataaaaaatc
      421 ccaaagttaa gaattaatta atattccaag tctttcacat taatgaatgg gaagcacgat
      481 ataacccctg ccttgctcta ccatagattt gtcattttta ctctaactgt tttagtggtt
      541 atcgcagtac cgttactgtt cttcataaat actagtggtg caattgacca acaactttta
      601 caaaaagcaa ctgcaaaagg tgtcactaac tcaagcagca gttccaacac cacggatcat
      661 acagccagcc agaacgtaga atctttggtt aggtctattc tgagccctgt gcctttatca
      721 tcatctgccg taaacgaaag tcgcgggaat agaaccaatg agtcatctgc aggaacagga
      781 cattcagaag gtgtgattgc tgaaaaaaat actgcaaacc tggtttcacg aacagcagcg
      841 ggcaccacac caataaagac tactactatt gtaacaacaa aaaatggaaa tacaacgaca
      901 aattcgtcaa caactccctt gcagccatca ttatcttctc tacgatcaac agtaaatcag
      961 cctaagagca gcattattaa acaaggaaac aatatacaaa ataccagtgt aagaaatgtt
     1021 catacgttat tattatctca tcaaataatt ccaccaaaga actttatact tctctatagt
     1081 acttcctctt acaaaatatt taatggatat ttggctgcaa agattccctg tagtgcaaat
     1141 tctgtacctt cgttacaaat acttgtagga cattcacctt acctcaaacc agttcaacta
     1201 catttagtca aagaattttc taagcctggg gacatatgca tgtatgatgt tgatattgga
     1261 tcagaaacag taacagcaat aacgcatggt aatgacagta tagataaagg aggagggcca
     1321 ccaccaccgc cacaacaaca acaagataat acattaacaa atactgtctt ggtactcagt
     1381 aacccaacag actctacggt aacactacca aacacaagta cagtcataat tggtgttaat
     1441 gaaatcggat cataacaaga tagatgcatt gtacgtttgt tggtttgtaa tctcggattt
     1501 cagaagcaaa taacaaactc aatatttact attgtttttc gcctggtgcc ttcatatttc
     1561 tgaaattaag gtacaagagt acatcatatg caattttcat aactccacct aagacaaacg
     1621 gtgcagataa aaaagacaac gattggaata tgtagccagc caacgatgga gatatagact
     1681 gggcgatatt tcttgaaata ttggttattc ctgcagctgc agttctttct tcatctttga
     1741 ctactgcaac tatatatgat tgtcttgtag gaacatccat ctgcgataga gccattctag
     1801 caaggtagaa tataattgct aatagaagtg taggagcaaa tgcaacaagt attagtaaaa
     1861 tattagatgg tatgtgtgta aagaccattg tattaaccaa acctatttta tctgcaattt
     1921 tagcagccac aataaaggaa aaggctgtga gaacacctgc aatagagaaa atataagata
     1981 ttgttgttaa atctactcca aactttgtga agaaccacaa agatatgaca ctctgaataa
     2041 caaagccacc agcaaaagaa tcaatagcaa aaagaccaga caatttgcca atgacttctt
     2101 ttgactttgg tgacaaggtt tgcttcaaag ccttcggtat attattagta ttattagtat
     2161 tggtattagt attttcttga acttctatct tctttgaaag tgaagagtaa atccctagta
     2221 ctcccagccc aagggcacta taaagaataa aaagcactct tatagagtc
//
LOCUS       DASQSJ010000297         2792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_534278, whole genome shotgun sequence.
ACCESSION   DASQSJ010000297 DASQSJ010000000
VERSION     DASQSJ010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534278"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VE223_05875"
     CDS             complement(<1..812)
                     /locus_tag="VE223_05875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZC21153.1"
                     /translation="MISPGYAIELLRKALEQYTPSRSEASLANMIKDKCTNDLGFEQV
                     NIDNVGNVIATKGHGEPKILLCGHMDTVPGQIPVRIENGFIYGRGASDAKGPLVAMLL
                     AASEFPKQRGTIIFAGVVDEEGNATGIKQLVKSKLSPDYAIFGEPSGIDNITIAYKGR
                     LAIRLTCDVGDSAHASAPWLAKNSIEEIYDFWSTIKSEINRIGASDNKANSVTCSLTE
                     ITGGSSHNVTPQKCKITMDIRIPTITTCEEVIDLLDGAIYEVASRKRVKATY"
     gene            complement(825..1697)
                     /gene="lysX"
                     /locus_tag="VE223_05880"
     CDS             complement(825..1697)
                     /gene="lysX"
                     /locus_tag="VE223_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HZC21154.1"
                     /translation="MTEEKRSSSLSILFDSIRWEEKALYEAAKKRGIKINNIDCKSLF
                     IDLNERDPSPYTNKVIIQRCVGYFKSIHSTAALEGLGAHIINSLRTATLCGNKLFAHM
                     ELQKAGVKTPKAVSAFSQESAIAAINSLGYPAVIKPTIGSWGRLIALLRDEDASKAVI
                     EDREHMFPLYQVYYFEELVSRPPRDIRAIVIGDRVVAAIYRYSAPGEWKTNMALGGHA
                     ETCPLTNELEDICLKATRVMDGQVVGVDLMESKEHGLIVHEINNTTEFKNTVRVTGVD
                     IPGLIVDFSSKLGK"
     gene            complement(1694..1861)
                     /gene="lysW/argW"
                     /locus_tag="VE223_05885"
     CDS             complement(1694..1861)
                     /gene="lysW/argW"
                     /locus_tag="VE223_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HZC21155.1"
                     /translation="MVKCTECDAEIKVPSDSLEGEIVTCSDCGASYELIKVEEGFNIK
                     PAQVVGEDWGQ"
     gene            complement(1871..>2792)
                     /locus_tag="VE223_05890"
     CDS             complement(1871..>2792)
                     /locus_tag="VE223_05890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HZC21156.1"
                     /translation="SDVDIAINCGASWIATYMGISDIHLSTKLKITREEAKIRALDVA
                     DYIKAHGLKARFTMEDASRTDPNFLIDMCKEMNNRGIERISIPDTVGIMCPKGMYNLV
                     KTVYENIDRSKSSLDVHCHNDIGLALANSLAGCEAGAEQIHTTIDGFGERTGIPALAE
                     TAVALTLIYKSNNNLRLHMLKDLSKTISEYTDLGIPESKPIVGDSAYKHKAGTHLAAI
                     LKNPAAYEILDPKIVGNRRKIVFGELAGKNGAGYLLSLLGLEARQNEGEILARGLKEL
                     RMGDILELYLDDRLERKILNDEAPKVKAKE"
BASE COUNT          726 a          630 c          495 g          941 t
ORIGIN      
        1 ctataagtag cttttactct cttcctgcta gcaacctcat aaatagctcc gtctaaaaga
       61 tcaattacct cttcacatgt agttatggtt ggtatacgga tatccattgt tattttgcat
      121 ttctggggcg ttacattatg acttgatccg cctgtgattt cagtaaggct gcacgtgact
      181 gaattggcct tgttgtcact agctccaatt cgattaatct ctgactttat tgtactccag
      241 aaatcgtaaa tttcttcgat tgaattttta gccagccaag gagcacttgc atgagcgctg
      301 tctccgacgt cgcaagtaag cctaattgcg agcctgcctt tgtaggcgat agtgatatta
      361 tcaatgccac tcggctctcc aaaaattgca tagtctggtg aaagtttgct ttttacgagc
      421 tgtttaatcc cagttgcatt tccttcctcg tcaacaacac cagcgaaaat tatggtccct
      481 ctttgttttg gaaattcgga tgctgcaagt aacattgcaa caagaggacc cttcgcatca
      541 gatgctccac gaccatatat gaagccgttt tctatccgaa ctggaatttg gccaggcaca
      601 gtatccatgt gaccacaaag caatattttg ggttcaccat gccctttagt tgcaataaca
      661 tttcccacat tatcaatatt gacctgttca aaaccaagat cgttagtaca tttatctttt
      721 atcatatttg ctaatgatgc ttcagatctt gatggtgtat attgttcgag agctttcctt
      781 aatagttcaa tagcataacc aggggaaatc aattttattc gttcttattt tcccaattta
      841 gatgaaaaat cgactatcaa tcctggaata tcaactccag ttactctgac agtattctta
      901 aattcagttg tattgttgat ctcatgaaca attaaaccgt gttctttact ttccataaga
      961 tcaacaccaa caacctgtcc atccatgact cttgttgctt ttaagcagat gtcctctaat
     1021 tcgtttgtta gaggacaagt ttcagcatgt ccccctaatg ccatattagt tttccattca
     1081 cctggagcag aatatcgata aatggccgcg acaaccctgt ctcctataac aattgcccta
     1141 atatccctag gagggcggct aacgagttct tcaaagtaat agacctgata aagtggaaac
     1201 atgtgctctc tatcttcaat tactgccttg gatgcatctt catcacgcag aagggcgatc
     1261 aatctgcccc aacttcctat cgtaggtttg attaccgccg gatatcccaa actattgatg
     1321 gccgcaatag cagattcttg ggaaaaggca gatactgcct taggcgtctt tactcctgct
     1381 ttttgaagtt ccatgtgagc aaatagtttg ttaccacaaa gggttgcagt acggagtgaa
     1441 ttgatgatgt gtgctccaag accctctaat gcggcagttg agtgaatact cttaaaatag
     1501 ccaacacaac gttgaataat tactttattc gtatatggag atggatctct ctcattcaga
     1561 tctatgaaaa gagatttaca gtcaatatta tttatcttaa tgcctctctt cttagcagct
     1621 tcgtatagag ccttttcttc ccagcggata ctgtcgaaaa gaatgctaag agaagatgat
     1681 ctcttctctt ctgtcactgg ccccagtcct cgcccacaac ttgggctggt tttatattaa
     1741 atccttcctc tacttttata agttcgtaac ttgcaccaca atctgagcac gttacaattt
     1801 cgccttctaa tgagtctgaa ggaactttga tttctgcatc acattctgta catttaacca
     1861 ttgctattgt ttactccttg gcctttactt tcggagcttc atcgttaagt atttttctct
     1921 ctagtctatc gtcaagatat aactccaata tatcgcccat acggagttct tttaaaccac
     1981 gagctagaat ttctccttca ttttgccttg cctctaatcc caacaatgat agcaagtaac
     2041 ctgcaccatt ttttcctgct agctctccaa atacaatctt gcgtctatta cctacgatct
     2101 ttggatctag gatttcgtac gctgctggat ttttgaggat cgcggcaagg tgagtgcctg
     2161 ctttgtgttt atatgcgcta tctcctacaa ttggttttga ttctggaatt cccaaatcag
     2221 tatattctga aattgtcttg gatagatctt ttaacatatg taatcttaga ttattgtttg
     2281 atttgtaaat tagcgttaat gcaactgcag tttcagctaa tgctgggata ccggttcgct
     2341 ctccgaaccc atctattgta gtatggattt gctctgcgcc tgcctcgcat cctgccaaag
     2401 aatttgccaa tgccaatcca atgtcgttat ggcaatggac atcgagtgag ctttttgatc
     2461 tatcgatatt ttcatagacc gtcttgacaa ggttgtacat gcctttcgga cacatgatcc
     2521 ctacagtgtc tggaatactt attctctcaa tcccacggtt attcatctct ttacacatgt
     2581 caataagaaa gttcggatcg gttctgcttg catcctccat tgtgaatcta gctttcaaac
     2641 catgtgcttt aatataatca gcaacatcga gtgctcttat ttttgcctct tctcttgtaa
     2701 tctttaattt tgtagacaga tggatatctg aaatccccat atatgtggca atccatgatg
     2761 ctccacagtt gatggcaata tctacatcgg at
//
LOCUS       DASQSJ010000298         2004 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_354731, whole genome shotgun sequence.
ACCESSION   DASQSJ010000298 DASQSJ010000000
VERSION     DASQSJ010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354731"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(332..1999)
                     /locus_tag="VE223_05895"
     CDS             complement(332..1999)
                     /locus_tag="VE223_05895"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC21157.1"
                     /translation="MVERDRQEDKRENILGSGLSPFKSAIFRTLCIAALFSYVGAAMY
                     DVGASWLMTSLAPNPLFVSLITTATTLPIFLFALPSGILSDIFDRRIILLIACAYMFT
                     ISTILGILTFIGLTTPTILLIFTFALGAGTTMIRTPIIPTMSGLVGRSELPDALTLSA
                     LASNIGRVIGPTIGGFIVAAIAPWAVFFLNSASFIGMIIVLSRLPRKSNVQQHNQHQP
                     QQQQSSLPPENIIRAIRVQMRYVRYSQAAHVLIVRAGLFTLCSSALLSLLPLLAKREL
                     GLDSTGFGLLLGSFGMGAIVGGIVILPRLRPKASVESLITGSIALLAIVTFTVGYERN
                     FGILCMAMALGGAAYITILSKFYTIGIKSAPKWIGARVLAIYLLILNGGLVVGSVIWG
                     TVANIFGIPITLLVASLALAATIIAKKRYNSTLLDDLDFTPASDHWSLPPQSSVDPLQ
                     NENQALITIEYNKIDPKLSDEFEQSVRELGRLLRSEGMAYWELFQDPADIAHYIEIRI
                     ADTWTDHIRQHEYVTRNVQVMENRIRELIKDCPQPIISHYIGKSPLK"
BASE COUNT          636 a          374 c          392 g          602 t
ORIGIN      
        1 catatgacaa acgtaagatt gtggttctag gattacgttc tttcattgta gcagtttagt
       61 aacctatgtg ttataataat atcatgggta cattgccttg cattgtacct agagcagcat
      121 tataaaacat agtccatttc gagccaaata gaaatttatt caattcagga agaatacaca
      181 ctattatata ctaaaataac atatgcatct atttctatat gtatttactg ctactattgc
      241 tgatactcga agatgtagta tctgctgctg tagctgttgt ggtcttactg aaaaatgtct
      301 taacataggt cacggtcttc ctgtttaaaa actatttgag aggagatttt cctatataat
      361 gtgatattat tggttggggg caatccttga taagttcgcg tattctattt tccataactt
      421 gaacattcct agtaacatat tcatgctgac ggatgtggtc agtccaagta tcggcaattc
      481 tgatttctat gtagtgagca atatctgcgg ggtcttggaa taattcccag taagccattc
      541 cctcacttct aagaagacgt cctaattcac gtacactttg ttcaaactca tcagataatt
      601 tgggatcaat cttgttgtat tctattgtta ttagagcttg attttcattt tgtaaaggat
      661 caactgagga ctgaggagga agtgaccaat gatcacttgc tggtgtaaaa tcaaggtcat
      721 ctaacaaggt actgttataa cgtttcttag caataatggt tgcagctaag gctaatgaag
      781 ctaccaacag tgtgattggg ataccaaata tgttagctac tgtaccccat attacacttc
      841 caactaccaa gccgccattt agtataagaa gatagattgc taatactcta gctccaatcc
      901 attttggtgc agattttatt ccaattgtgt aaaattttga taatatcgtg atgtaagctg
      961 ctccacctag cgccattgcc atgcaaagaa ttccaaaatt tcgttcatat cctactgtaa
     1021 atgttacaat tgcaagtaac gctatagaac ctgtaataag ggattctacc gacgccttag
     1081 gtcgtaacct tggcaaaatt acaattccac cgactattgc acccatacca aaagatccta
     1141 atagcagtcc aaatccggtg gaatcaagtc ctaattcgcg tttagctaag agtggtaaga
     1201 gagataataa tgcactacta cataatgtaa acaaacctgc acgtacaatt aatacatgcg
     1261 cagcttgaga atagcgtaca tatcgcatct gaactcgaat agctctgatt atattctctg
     1321 gtggtagaga gctttgttgt tgctggggct gatgttgatt atgttgttgg acattggact
     1381 ttcgtggcaa tctacttagg actatgatca tgccaataaa ggaagctgaa ttaagaaaaa
     1441 atacagccca aggtgcaatt gcagctacaa taaaaccacc tatcgttggg ccgataaccc
     1501 gacctatatt actagcaagg gcactaagag ttagagcgtc aggtagttct gatcttccca
     1561 caagtccact catagtgggg ataatgggag tcctaatcat agtcgtacct gctcctagtg
     1621 caaaagtaaa tatcaaaagt attgttgggg tagtcagacc aataaaggtg aggattccta
     1681 gtatagtgga tattgtaaac atatatgcac acgcgataag gagtataatg cgccgatcaa
     1741 aaatatcgga taatatcccg gatggtaacg caaatagaaa aattggtaga gtagtagcag
     1801 ttgtgataag agaaacaaat aagggattag gagcaagtga agtcattagc catgatgccc
     1861 ctacatcgta catagccgca ccaacatatg aaaagagggc tgcaatacat aacgtcctaa
     1921 agatagcaga tttgaaggga ctcaaacctg aacctaaaat attttctcgt ttgtcttctt
     1981 gcctatctct ttcaaccatt gaaa
//
LOCUS       DASQSJ010000299         3170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_234817, whole genome shotgun sequence.
ACCESSION   DASQSJ010000299 DASQSJ010000000
VERSION     DASQSJ010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234817"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VE223_05900"
     CDS             <1..589
                     /locus_tag="VE223_05900"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HZC21158.1"
                     /translation="YGDFNNWFAAFAFWVFKYYGYRDVKIMDGGRKKWLEEDRQLTKE
                     VPNYPKGNFKASEPDDNIRVFMNYVKETLGKKDKALVDVRSPKEFTGEILAPPEYPTE
                     HAQRGGHIPGAANIPWSQAVNDDGTFKSVDELKKLYEAKGIIPDKEIITYCRIGERSS
                     HTWFVLKYLLGYPNVKNYDGSWTEWGNMIANQVEK"
     gene            complement(660..1352)
                     /locus_tag="VE223_05905"
     CDS             complement(660..1352)
                     /locus_tag="VE223_05905"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HZC21159.1"
                     /translation="MYISVECIPNNMEINRCTFPEGLLYDTEALTWLKNKDNVVTIGV
                     TTILTSIAGRLSKVKIKQVGTKIERGKSIGTLESLKYFGVVRSPIKGKIIEINDSITI
                     RPKTVNDFPYSDGWFAKLEPDIEAEFGALETIEKCYNKINSLIQQLHVRCFVAFPDHE
                     MFEIGVECAATLTKLDELLTKIPIGEVVHLVSDDPTADLEMIRWSEQNGQALLETRSE
                     GNLFHFIVKKIK"
     gene            1556..1765
                     /locus_tag="VE223_05910"
     CDS             1556..1765
                     /locus_tag="VE223_05910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21160.1"
                     /translation="MIKFKVIRDTESNQKAVEEPVPTPSPGIAVSRNLKRRWWCYDCK
                     LYFLAYDDKHEADIASKVMKKFSQT"
     gene            complement(1976..>3170)
                     /locus_tag="VE223_05915"
     CDS             complement(1976..>3170)
                     /locus_tag="VE223_05915"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HZC21161.1"
                     /translation="DQEAMAQPNTTATSPCINYNRSARLIIVTCTSAKLSDVYNELKD
                     PSILDIQKQRRPDHSFSSSNNVWLLNANLTVSKGAILYINSTDTSWLKIISDGTTAYN
                     IDVHGSLKVDSVAITSWNPATNYYAISNGTRILQSSGYEVHAGSPRPFIKIDKDATGS
                     TDITNSEIAYLGYEGGVGASVTGLTYLGGQGSILRHNNIHDLYFGFYSSNVGDMIIEG
                     NHIYNNSKYGLDPHTGTHGMLIRNNVVNDNGGIGIICSLNCYNITIEDNQVYRNAEPG
                     IFFSRNMYNSIARNNYVHDEATGIFISQSHDNEIYNNTISNTTNAIYVKDNSSNNNIY
                     QNTVIKSANGINVKSAGSGNMVYSNTIMNGYQTGKNITDLGSTTSNTITDNKETHQHR
                     HRHHH"
BASE COUNT          920 a          583 c          610 g         1057 t
ORIGIN      
        1 ctatggagat tttaataact ggtttgcagc gtttgcattc tgggtgttta aatattatgg
       61 gtacagagat gtgaaaatca tggatggagg cagaaagaaa tggttagaag aagaccggca
      121 actaactaag gaggttccaa attaccctaa gggcaatttt aaagcctctg agcctgacga
      181 taatatcagg gtctttatga attatgtaaa agaaacgctg gggaaaaagg ataaagcatt
      241 agttgatgtc agaagtccca aagagttcac tggcgaaata ttagctcctc cagaatatcc
      301 aactgagcat gcgcaacgtg ggggacatat tcccggggca gctaacatac cttggagcca
      361 agctgttaac gatgatggaa catttaagtc ggtagatgag ttaaagaaac tatacgaagc
      421 gaagggaata atccccgata aggaaatcat tacgtattgt cggattgggg aaagatcgtc
      481 tcatacgtgg ttcgtcttaa aatatctcct aggttatcct aacgtcaaga attatgatgg
      541 atcttggacg gaatggggaa atatgattgc taatcaggta gaaaaatgaa tgactataag
      601 aataataatt aacagcagtt tccacaggaa caaataaagt agatttgtga ctatttttct
      661 tattttattt tcttcactat aaaatggaaa aggtttccct cagatcttgt ttctaggaga
      721 gcctgaccgt tctgctctga ccaccttatc atttctagat ccgcggtcgg atcatctgat
      781 acgagatgta caacttcgcc tatgggaatt tttgtcaaca attcatcgag ttttgtaagt
      841 gtagcggcgc attcgactcc tatttcaaac atttcatggt ctgggaatgc tacaaagcac
      901 ctaacatgta gctgttgaat taaagaattt attttattat agcatttctc aatcgtttct
      961 aaagctccaa actcagcttc tatgtctggc tctaacttcg caaaccagcc gtctgagtaa
     1021 ggaaaatcat ttactgtctt tggtcgaata gttatggaat cgttaatctc aattatctta
     1081 cctttgattg gacttcgtac aaccccgaaa tatttcaaac tctccaatgt cccaatactc
     1141 tttcctcttt ctatttttgt ccctacttgc ttaattttta ctttagataa tctgccggcg
     1201 atagatgtta ggatagttgt aactccaatc gttaccacat tgtctttatt ttttagccaa
     1261 gtaagggcct cggtgtcata taatagtcct tccggaaagg tgcagcgatt tatctccata
     1321 ttattgggaa tacactcaac cgatatatac attggagtca tgcagctggc tgatagcata
     1381 cgttgctatg tgttaaacgt tctgagaacg tctaatcttg ttgtttaagg gttcgatatg
     1441 tcactattta ttattttaca aatctacatc ctatcatgtc aatattgtaa aacaaaccac
     1501 agctattatt ttacaaagtt ccaaaatact tatttagaaa atatatctat atactatgat
     1561 taagttcaag gtaatacgtg acactgaatc taatcaaaaa gcagtagaag aacctgttcc
     1621 taccccttct cctggaattg ctgtttcgcg gaatttaaaa cgaagatggt ggtgctatga
     1681 ttgcaagttg tatttcttgg catacgatga caagcacgaa gctgatattg cgtccaaagt
     1741 tatgaaaaaa ttttcacaaa cgtaatggcg ggcaactctt atcaccaatt tatggttatg
     1801 atgcgctccg acagatattg agttcccact tatggattaa tgcttcagta acgacgacaa
     1861 catgtccttt ttcttgataa gaaaccatat tggcatcaaa aacttgtata aatgaacgat
     1921 acatcatgtc ctcgatagat tgatcaaaag taaccgtact tcggcattgt tgttgttaat
     1981 gatgatgacg gtgacgatgt tggtgagtct ccttattgtc tgttattgtg ttactagttg
     2041 ttgaccctag gtctgtaata ttttttccag tttgataacc attcattatt gtatttgaat
     2101 aaaccatatt tccacttcca gcgctcttga catttatgcc gtttgctgac tttatcacag
     2161 tattttggta tatgttatta ttagaagaat tatcttttac ataaattgcg ttagtagtat
     2221 ttgaaattgt attattgtat atctcattgt cgtgcgattg tgagatgaaa atgcctgttg
     2281 cttcatcatg gacataatta tttctggcaa tggagttata catatttctg ctaaaaaata
     2341 tccctggttc tgcgttccta tacacttgat tgtcttctat tgttatattg tagcagttta
     2401 aagaacaaat gatccctatg ccaccattat cattgaccac gttgtttcga attagcatac
     2461 cgtgagtccc agtatgcggg tcaagtccgt atttagaatt gttgtaaata tggttgcctt
     2521 caataatcat atcgcctaca ttgctagaat agaaaccaaa ataaagatcg tgtatgttgt
     2581 tgtgtcgtag tatgctacct tgacctccga gataagtaag cccagtaacg ctggctccaa
     2641 ctcctccctc atatcctaag tatgcaatct ctgaatttgt gatatctgta ctacctgttg
     2701 cgtctttatc aatttttata aatggtcttg gtgaacccgc atggacctcg tatccactgc
     2761 tttggagtat tcttgttcca ttactgattg catagtaatt ggttgccgga ttccaggaag
     2821 ttatggccac cgaatctacc tttaggctgc cgtgcacgtc tatattgtat gcagtcgttc
     2881 catctgaaat tatctttagc catgaagtat cagtcgaatt tatgtataat atagctcctt
     2941 ttgaaaccgt caaatttgca tttaaaagcc acacattgtt actagaggag aaagaatgat
     3001 cagggcgtct ttgcttttgt atgtccaaga tacttggatc ctttagctca ttatatacgt
     3061 ctgacagctt tgcagaagtg caagttacga taattaatct tgcagatcga ttatagttga
     3121 tacagggaga agttgctgtt gtattaggtt gcgccatcgc ctcttgatcc
//
LOCUS       DASQSJ010000300         2380 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_514012, whole genome shotgun sequence.
ACCESSION   DASQSJ010000300 DASQSJ010000000
VERSION     DASQSJ010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514012"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..447
                     /locus_tag="VE223_05920"
     CDS             286..447
                     /locus_tag="VE223_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21162.1"
                     /translation="MVCLLFSPFVPLKSNAIIREAWNTTAQTTEDKGEKIQALSPARA
                     LFYEAGFTY"
     gene            425..556
                     /locus_tag="VE223_05925"
     CDS             425..556
                     /locus_tag="VE223_05925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21163.1"
                     /translation="MKLDLLTNCTVDDDDDDDDDDDAIRFVNENRTKGHYVSTWMIL"
     gene            complement(1670..>2380)
                     /locus_tag="VE223_05930"
     CDS             complement(1670..>2380)
                     /locus_tag="VE223_05930"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HZC21164.1"
                     /translation="KRHFVFLLTVIEVHNPFLTPQRTFIMSRSAKEWSSPQNALAYLN
                     VADNIPHRSEGESVLIDHLPENTKRVLDLGTGDGRLIRLIKAKKPDIEAVALDVSPTM
                     LKSARDHFANDSRVKITEHDLSQPLPDLGYFDAVVSSFAIHHLKHERKHELYEEIYDI
                     INPTGVFCNLEHVASPSVELHVKFLNAIGYTPEKEDRANRLLPMEIQLGWLRDIGFVE
                     VDCYWKWLEMALLIGYKA"
BASE COUNT          728 a          437 c          472 g          743 t
ORIGIN      
        1 aatcagacaa atactttctc tgactaataa caaaggctga ttgaagaaca tgcgtcattt
       61 tgataatata ttagcatatc attggggccg atccttcccc aacctgcaag ctcctcccca
      121 ttccaatttg gatgattgca attacatttt ggaagagcca aagttttgat ttatccttct
      181 ttctaggagg ttgaaggcaa ccgtttattg aattttattg gaggttgatc gtcttgatgt
      241 ttttctttac tctatggaca gcatctgaaa ggtattactc agagaatggt ttgtctcctc
      301 tttagcccct ttgttccatt aaagtcaaat gcaattataa gagaagcatg gaatactaca
      361 gcacaaacta cagaagataa aggagagaag attcaggcat tatctccggc tagagcatta
      421 ttctatgaag ctggatttac ttactaattg tactgtagat gatgatgatg atgatgatga
      481 tgatgatgat gcaatcaggt ttgtaaacga aaacaggact aagggccact acgtgagcac
      541 ttggatgata ctttgattag atttgcagat aacagttgtc ataaagcttt gggacttttg
      601 acaaggcaat tcctaactaa gcggtcgttt ttacttccgt aatccattcg catttgacgc
      661 catgcttatt atgatgatct tccaccgctt atctgtttgg tgcatcaata aggcagtaaa
      721 tctatcttcc ttttggttat acattaagtt aagatgttta attccgaact catctactgg
      781 cgaatcttgt aactttctaa cgtttcttcg tcgaatcctt ttaaagggtg aacatcaaga
      841 aatttgggca tgtatccagt atatttataa actttttaaa tatatcgtca tagtctcctg
      901 ctgggatatt cctctgaaga tccataactg ctttaaccct acatgaaagg ttatttttgg
      961 tgtcggcata tttgaatacg aagcaaacct gggagaggaa acagccgcgg gaaaggtttg
     1021 ggaatggaaa tgaaatgttc atagttccat cactaacggt ttggaaatag cttgattcat
     1081 tgattcacca acaaagggct tcaaagaact ctataaatgc acaggcgaca tttggggtga
     1141 ccgttctata gcaaattgtt ggtggtctgg tgagctaact gaaaaattct tcaacctaaa
     1201 tccacggcca gcaataacag aattaaaacg ggtaatatat ccgccgggac tagtaataag
     1261 accactgatc ttgatatatc aatgcattag gagctatgtt ccagagctga aaggccaggg
     1321 aggatcaaat acgacaagca agcatatata aaaaatcttc aaacaagaag cacaaacacg
     1381 tcagcaagtc atgcagcaga taatcaaaac aaggcatctt gggtcgtcag tgaaaggcta
     1441 tatagagaaa tggtctagta ttggatgcat ctataatgtt ttgggccgtt gattggttgc
     1501 tgttgccaac atgaactcaa agaagaggaa tagctaggcc tgttgctaat gctgtataaa
     1561 ataagataga taaaactgca aatatcagga attgtgttaa gattggtaga gacaagttca
     1621 tagaaaatgt aactttattg tggatactat tagtactatt accagttgtt catgctttat
     1681 atcctattaa cagagccatc tcaagccact tccaataaca atctacttcc acaaatccta
     1741 tatctctcaa ccatcctaac tgtatttcca ttggtagcaa tctattggct ctatcttctt
     1801 tttctggagt gtatccgatt gcgttgagaa atttaacatg caattcaaca gaaggtgatg
     1861 cgacatgttc taaattacaa aatactcctg ttggattgat gatgtcataa atttcttcgt
     1921 agagttcatg cttacgttca tgtttaaggt ggtggatggc aaaacttgat acaacagcgt
     1981 caaagtaacc taaatccggc agaggttgac tgagatcgtg ttctgtaatc ttaactctcg
     2041 aatcattagc aaagtgatct cttgcagatt tcagcattgt tggagatacg tctagcgcta
     2101 ctgcttctat gtctggcttt ttcgccttta tcagcctaat caatcttcca tctcctgttc
     2161 ctagatccaa aacgcgttta gtattttcgg gcaggtgatc tatcaaaaca gattcaccct
     2221 ctgatcgatg tggaatatta tctgccacat ttaaatatgc cagagcattc tgtggactag
     2281 accattcttt tgcggaacga ctcatgataa aagttctttg tggggttaaa aaaggattgt
     2341 ggacttcaat gacagttagt aagaaaacga aatgtctctt
//
LOCUS       DASQSJ010000301         6814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_514146, whole genome shotgun sequence.
ACCESSION   DASQSJ010000301 DASQSJ010000000
VERSION     DASQSJ010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6814
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514146"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(260..1213)
                     /locus_tag="VE223_05935"
     CDS             complement(260..1213)
                     /locus_tag="VE223_05935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21165.1"
                     /translation="MKSGRLALLLAVGIVIFTMTCTGWVNTGAYAQVAPSMQYQPAPA
                     QALTNNNATAPFSLPSIKLDNNTNIAIGKTGPIAVAGPDQIVKEGSTVTLNGSESRDL
                     NGIILSYSWRQIPTSHVITLSGADTPVWSFTAPRVSADTTLTFELTVTDNNGLTDNST
                     LNVLVKHVPSTANSGPTSTNNPPIAGIVPEQTPPTANPPIATPTSNQIGNGNTTNTSS
                     PLVANAGPDKITQSGSFVVLDGSSSMGNITSYSWKQVSGKSVKLTDSDTAKATFVAPS
                     LSKDSALKFKLTVNSGKDKTATSTVNINVIKDNNKSNDSKR"
     gene            1586..3187
                     /gene="pckA"
                     /locus_tag="VE223_05940"
     CDS             1586..3187
                     /gene="pckA"
                     /locus_tag="VE223_05940"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HZC21166.1"
                     /translation="MNDNPRSITTKCMVQLEKMDIRLGKIHRNLSVPSLIEIAIHRKE
                     GNFSSTGALSVKTGKFTGRSPDDRYIVDDNITHNSVDWGKNNVPISQQKFEKIFHRMK
                     KYVEGREFFVFDGYIGADVEIRLPIRVITDKAWHSFFATQIFIRPTMTELENFSPAFT
                     LLSVNDFRAIPGVEGTRTETFIIISFGEKMVLIGSTSYAGEIKKAMFSVMNYLLPKKG
                     VFPMHCSANVGTDGNTALFFGLSGTGKTTLSADPERRLVGDDEHGWSDNGIFNFEGGC
                     YAKCINLKNENEPEIWKAIRFGAVMENVIIKEGTREPDFGDGSLTENTRVVYPIEFIP
                     GAITPSVAGHPKVIVFLTADAFGVMPPIAKLTQEGAMYHFMSGYTSKLAGTERGITEP
                     KETFSQCFGAPFMPLHAKEYANMLGKKIAEHNTKVYLINTGWSGGPYGIGKRMNLKYT
                     RAMVTAALNGDLEKVPFKHNDIFNLEIPTLCPGVPSTILDPSNTWADNDKYIMSAKRL
                     AALFVKNFEKFGEISKEIRNAGPLL"
     gene            complement(3196..3336)
                     /locus_tag="VE223_05945"
     tRNA            complement(join(3196..3233,3250..3294,3327..3336))
                     /locus_tag="VE223_05945"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3251..3253),aa:Gln,seq:ctg)
     gene            complement(3382..3741)
                     /locus_tag="VE223_05950"
     CDS             complement(3382..3741)
                     /locus_tag="VE223_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21167.1"
                     /translation="MTTSSLEDTKESKVKSKGKHASSTENRRMVWEKVVWPLILEVNR
                     SYFNLKEYHTKRNEFCRLYNIQPSKVAGGFVSLLIKGILIREKNIYSIHYRLIPYMRK
                     KVNLEYGLVIREVNTKR"
     gene            3817..4554
                     /locus_tag="VE223_05955"
     CDS             3817..4554
                     /locus_tag="VE223_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HZC21168.1"
                     /translation="MNFNGSIESALDLLSKKWKIDPEIYDLHSGKRDDVVDTAVFVNG
                     VVFHIPTLTKDNLYVLWKCLWPDCHNCCERQGRLPLTKDDIKTIAKKMGYHSKADFVK
                     NETRISSWQEQEAFGNVITTITMLSLKRKTNESQEQDGTPLLCRFLDEKGYCRIHPEK
                     PGVCWLYPFASWLEVDKGQSIVHATFQLTGDCPGFYTSKSLDDMKPVLKEYSKKIYDY
                     NMDVSRTTREGFGSINIVNLQKTGENS"
     gene            complement(4984..5607)
                     /locus_tag="VE223_05960"
     CDS             complement(4984..5607)
                     /locus_tag="VE223_05960"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HZC21169.1"
                     /translation="MKKYELPQLPYGYDALEPHIDARTMEIHYTKHHQTYTDKLNAAL
                     EKCPSDVQEKDITEILANLDQVPSDQKSAINFNGGGFDNHRIFWNNMKNNGGGDPGGS
                     IADAINTSFGSFSDFKEKFSSTTALIQGSGWGWLVYNPSAKKVEYKAMPNQTSPRTEG
                     LIPLLGCDVWEHAYYLKYQNRRPDYISAWWNVVNWDDVAKRYDKLNK"
     gene            5737..6162
                     /locus_tag="VE223_05965"
     CDS             5737..6162
                     /locus_tag="VE223_05965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32e"
                     /protein_id="HZC21170.1"
                     /translation="MVINKQLLEARKKIADRRPKFVRQESWRYDRLAENWRKPKGKDN
                     KMRKQLSGVPRIVKIGYRGPKSARGLHPSGYTDNIVFNINDLTKLDPARDAARLAHTV
                     GTRKRKEIIAKAEIMHIKILNAGNLSAKKDKEEKEEEKP"
     gene            6162..6608
                     /locus_tag="VE223_05970"
     CDS             6162..6608
                     /locus_tag="VE223_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HZC21171.1"
                     /translation="MVVNIRKKRELISRMLGVGANRVRFEPDKLDDIADSITRENIRA
                     LIKNGVIWTVRERGTSRARAEAKLSVHRKHGLGPGSKKGKKTARMGKKEIYVVRVRSM
                     RYHLKVLKDRNDINRETYWSLYKKVNGGQVRSLAHLRELVKQFKSH"
BASE COUNT         2227 a         1158 c         1337 g         2092 t
ORIGIN      
        1 gatatttgcg ttatatatgt gagtcgattg gccattttga atattttgta tacaatcaag
       61 atctttatgc aataataaag taacaaatct tctcataaac aacagtgaaa ataagtacaa
      121 ggagagattg aagtcaaaac acctatccaa tttcttcatt tgaatgatta ccagaattat
      181 ctccgataga aagatattag atctttgaaa caatatcaaa ataagttttt atagtatatg
      241 tattgtacca tcgtttctct tacctttttg aatcatttga tttgttatta tccttgataa
      301 cattgatatt tacggtggat gttgcagtct tgtctttacc gctatttacc gtaagcttaa
      361 atttcaatgc tgaatctttg ctaagacttg gagctacaaa ggttgccttt gccgtatcag
      421 aatctgttaa cttaacagac tttccactaa cttgcttcca tgagtaagac gttatgttac
      481 ccatgctgct gctcccatct aagacaacaa aagaaccact ttgtgttatt ttatctgggc
      541 ctgcattggc tactagagga ctactggtat ttgtagtatt tccattacct atttggttag
      601 aagtaggggt cgcaattggt gggttagctg taggaggtgt ttgttcagga acaatacctg
      661 caattggtgg gttgttagta gaagtagggc ctgagttagc tgtagagggc acatgtttga
      721 caagaacatt cagagtacta ttatcagtca aaccgttgtt atctgtaaca gtcaactcaa
      781 aggtaagtgt agtatcagca gatactcttg gtgcagtaaa agaccaaaca ggggtatcgg
      841 caccgcttaa tgtaataaca tgacttgttg gaatttgcct ccaggagtaa gataggatga
      901 tgccatttag atccctactt tccgaaccgt tcaaagtaac ggttgatcct tctttgacga
      961 tttgatctgg accagcaaca gcaattgggc ctgtttttcc tattgcgata ttggtattat
     1021 tatctaattt aatagagggt aacgaaaaag gagcagtagc attattattt gttaaagctt
     1081 gagcaggagc aggttgatat tgcatacttg gtgctacttg tgcatatgca ccagtattaa
     1141 cccatccagt gcaagtcata gtgaaaataa ctattccaac agcaagcaat agtgccagtc
     1201 ttccagactt caattgtata accctgctag gagtttaaca atgaatataa aaataggctc
     1261 tataattaga attaagttaa ggttaaaaaa ccatagacct ataaccatca aattctttca
     1321 agttatcttc ctgtgcaaca ttctttactt aataagatta ctatcaagca gtcagtcgta
     1381 gatttggtat atatttccct ttacacagct catacaactg aaccttcgta tataatattg
     1441 gaactgggta aaagaatggc tacaataagc accgtaagtt ctggaattct aatcaatctt
     1501 acgaagtgca ttacaaaaga aaacgtcact tctggttcaa tataggaaat caattaaata
     1561 tgtaaatcag tggttaaacc atttaatgaa tgacaatcca aggagtataa ctacaaagtg
     1621 tatggtgcag cttgaaaaga tggatattag gctcggcaag atacatcgaa acttatcggt
     1681 gccatcatta atagagattg ccattcatag aaaagaagga aatttttctt caactggtgc
     1741 attatccgta aaaacgggca aatttacagg aagatcgcca gacgacagat atattgttga
     1801 tgataatatt actcacaact cagtagactg gggtaaaaac aatgttccga tttcacaaca
     1861 aaagtttgaa aagattttcc acagaatgaa aaaatatgtt gaaggtagag aattttttgt
     1921 ttttgacggt tacattggag cagacgttga aataaggctg cctataagag taattactga
     1981 taaagcatgg catagctttt ttgcaactca aatttttatc cgtccaacaa tgacagaact
     2041 cgaaaatttt agtccagcat ttacactatt atctgtgaac gactttaggg caatacctgg
     2101 agtggaagga acaagaactg agactttcat cataatcagt tttggagaaa aaatggttct
     2161 aatagggtca acttcttatg caggcgaaat taagaaagct atgttctctg taatgaacta
     2221 tcttttgcct aaaaaaggcg tcttccctat gcattgctca gcgaatgtgg gcacagatgg
     2281 aaatactgct ttattctttg gattatctgg tacaggaaag acgactctct cggctgaccc
     2341 tgaaaggcgc cttgttggtg atgatgaaca cggctggtct gacaatggta tattcaattt
     2401 cgaaggtggc tgttatgcaa agtgcataaa tctaaaaaac gaaaatgaac cagaaatatg
     2461 gaaagctata agatttggtg cagtaatgga aaatgttatt attaaggaag gtacgcgaga
     2521 acctgatttt ggcgatggga gccttacaga aaacactcgg gtagtttatc ctattgagtt
     2581 tattcctggt gcaataactc caagtgttgc tggtcatcca aaagttattg tgtttctgac
     2641 cgcggatgcc tttggagtaa tgccaccaat tgcaaagctt actcaagaag gtgcaatgta
     2701 tcatttcatg tccggctata ctagtaaatt ggcaggaacc gagagaggaa tcaccgagcc
     2761 aaaggagacg ttctcacaat gttttggcgc tccatttatg ccattacatg ctaaggaata
     2821 cgcgaatatg ctcggaaaaa aaattgcaga acacaatacc aaggtatacc tcattaacac
     2881 tggttggtcg ggaggaccat atggcattgg caagagaatg aatctcaaat atactagagc
     2941 gatggtcaca gcggctttga acggagacct agagaaagtg ccgttcaaac ataatgatat
     3001 tttcaactta gaaatcccta ctttatgtcc tggagttcca tctacaattc ttgatccaag
     3061 taacacatgg gctgataatg ataagtatat tatgtctgct aaaagacttg cagcattatt
     3121 tgtcaaaaac tttgaaaagt ttggggaaat atctaaggaa attcgtaatg caggcccgtt
     3181 attataagca taaaatggta gcccggagca gattcgaact gctgtctcca ggtttctttt
     3241 cttagagatc cagagcctga aatccctagc cccgcttgga gattggccac tagactcggc
     3301 acctgattaa attgaaaata caggttcgac cgggcttcac gagctactat acaaagatct
     3361 aaatcggact gatatttgat tttaccgttt tgtattgact tccctaatta caagaccata
     3421 ttccaaattt actttctttc gcatatatgg aataagtcta tagtgtattg aatagatgtt
     3481 cttttccctt atgagtatcc ctttaattaa caaagataca aaacctcctg caacttttga
     3541 tggttgtata ttgtaaaggc gacagaattc attccttttt gtatggtatt cctttaaatt
     3601 aaaatatgat cgattgactt ccagtatcag aggccaaaca accttttccc ataccattct
     3661 acgattttca gtagaagatg catgttttcc tttgcttttg accttgctct cttttgtatc
     3721 ctctaatgat gatgttgtca tctttgttat gaataccttc agtatttgac agaggcacat
     3781 ttaaacgccg gttttttata aatacaatgg ctatatttga atttcaatgg ttccattgaa
     3841 agtgcgcttg atctgctttc aaaaaagtgg aaaatagatc ctgagatata tgatctacat
     3901 agtggtaaaa gagacgacgt agtcgatacg gcagtatttg tgaatggagt tgtatttcat
     3961 atccctactc ttaccaaaga taatctatat gtcctatgga agtgcctatg gccagactgt
     4021 cataattgct gtgagcgaca gggaagatta ccattgacaa aagatgatat caaaactatt
     4081 gctaaaaaga tgggttacca ttcaaaagca gactttgtca agaatgaaac aagaatctca
     4141 agttggcagg agcaggaagc atttggtaat gtcataacta ctattactat gctttctcta
     4201 aagagaaaaa cgaatgagag tcaagaacaa gatggtactc cgcttctgtg caggttcttg
     4261 gatgaaaaag gatattgcag aatccatcca gaaaaacccg gtgtatgctg gctttatcca
     4321 tttgcttcat ggttagaagt agataaggga caatctatag tacatgcaac ttttcaatta
     4381 actggcgatt gtccaggatt ctataccagc aaatctctag acgatatgaa acctgtctta
     4441 aaagaatatt caaaaaagat atatgattat aacatggatg tcagtagaac tacaagagag
     4501 ggttttggct ccatcaatat agttaattta caaaaaaccg gtgaaaattc ataatttttt
     4561 agatgcaaat agatacactg tattagttag caaaataggc gattacaaca gttatgatat
     4621 aataacacac tttcattgta cttgcaaaag caatatgaca aacaatacat gttgatagag
     4681 atctccaaac acatcatgga ttctttgaac aatagttatc tcaagaatac acttagagca
     4741 gatgacacat tggaataggt ggttttcagt ttttcaactg caataaatga ggtctactgg
     4801 taattgcatt tccaatacaa atgcatgaaa tttctttccc cgattattac tatcctgtaa
     4861 tctaccttca ttaatcgaag gctagtcctt atgacaatct gtataaatta catcaaactt
     4921 gtcgtattga cgttatgatg aaattcaaag tagatcgaaa ataaaaagaa ggtagtcttt
     4981 aatttacttg tttagtttgt catacctttt tgctacgtca tcccaattta caacattcca
     5041 ccaagcagaa atataatcag gtcttctgtt ctgatatttg aggtaatagg catgttccca
     5101 tacgtcacat cctaaaagcg ggatcaaacc ttctgttctt gggcttgttt gatttggcat
     5161 tgccttgtat tcaactttct tggcagatgg gttatagact aaccatcccc aaccacttcc
     5221 ttgaatcaat gctgtagtag aagagaattt ctccttaaag tctgaaaaac tcccaaatga
     5281 tgtgtttatt gcatcagcaa tagatccgcc tgggtctcct ccaccattgt ttttcatgtt
     5341 attccaaaat attcggtgat tatcaaaccc accaccgtta aagttgattg cacttttttg
     5401 atcagatgga acttggtcaa gattggctaa tatttctgtg atgtcttttt cttgaacatc
     5461 agaaggacat ttttcaagcg ctgcattgag cttgtcggta taagtttggt gatgttttgt
     5521 atagtgtatc tccatagttc ttgcgtcaat atgtggttct aatgcatcat atccgtaggg
     5581 taactggggt aattcgtatt ttttcatgtt tagtaaatca aagttggaac tattaacctt
     5641 tctgctaagt gtgcttaggt attcaaggtt attaatattt tgaaaagtca gaaacgtatt
     5701 tatttaaaac ttatttcttg tttattttat attataatgg taattaataa gcaactgctc
     5761 gaagccagga agaaaatcgc tgacagaagg cccaaatttg taaggcagga gagttggaga
     5821 tacgatcgtt tagccgagaa ctggagaaaa cctaaaggca aagataacaa gatgcgaaaa
     5881 cagttatctg gtgtaccacg aatagtcaag attggctata gaggtccaaa aagtgcaaga
     5941 ggtcttcatc cttcaggata tacagataac attgttttca atataaacga tctcactaaa
     6001 ttggatccag caagagatgc cgctagatta gcacatacag ttggaacgag aaaaagaaaa
     6061 gaaataattg caaaggctga gatcatgcat attaaaatat taaatgccgg caatctgtcg
     6121 gcaaagaagg ataaggaaga aaaggaagag gagaaacctt aatggttgta aatataagga
     6181 aaaaaaggga attaatctca agaatgttgg gagttggtgc aaacagggtc agatttgagc
     6241 ccgataagct tgatgatata gctgattcga tcaccaggga aaacatacgg gccctgatta
     6301 agaatggggt gatctggaca gttagagaaa ggggaacatc aagagcacgc gctgaggcaa
     6361 aactatctgt gcacaggaag catggattag gtccgggttc aaaaaaaggt aagaaaacag
     6421 caaggatggg taagaaagag atctatgtcg ttagagtaag atcaatgaga taccatttga
     6481 aagtattaaa ggacagaaat gatatcaata gagaaacata ttggtcatta tacaagaaag
     6541 ttaacggcgg tcaagtaaga tccctggctc atttaagaga gctcgtaaaa caatttaaaa
     6601 gtcattagat tttttgattt tttctgaaat tcagtttgca gatgctaaaa tttcggtttt
     6661 catttgaaat tacatccctc ccttttaagt gctcttttca ttaatattcc atagactaac
     6721 ctctcaattt gccatttgta tatgacatga gacaagaatg ggtttagatt ttatttagaa
     6781 tgttaccaat tgttcaaacc ttatggataa ccaa
//
LOCUS       DASQSJ010000302         2360 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_474762, whole genome shotgun sequence.
ACCESSION   DASQSJ010000302 DASQSJ010000000
VERSION     DASQSJ010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474762"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1504..>2360)
                     /locus_tag="VE223_05975"
     CDS             complement(1504..>2360)
                     /locus_tag="VE223_05975"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HZC21172.1"
                     /translation="SSSMYLPAHAQSVIKTLKVDDPAGIVLDLKGNAYVVDSGNNRIV
                     EFNSNGTVIRTWGSSGSGPGQFNSAVGITLDYTRGYVYVTDTGNDRVQKFTSDGKFLT
                     MWGSSGSGPGQFQTPIGIDEDESKQNVYVTDVGNNRVERFSSNGLFVGQWGSLGSGPG
                     QFANPGRVAVDPAGNVFVADFGNNRVQKFDENGKFLRTWGSLGSGNGQFYNPTGMTVV
                     FPQGNVYVVDTGNGRIQEFTSDGKFINKWSINTPIGATDNIDIDVNSKGVIYLTDRTA
                     DQVLVFSP"
BASE COUNT          791 a          453 c          403 g          713 t
ORIGIN      
        1 tcaagaccac ttcgactgta gatgtcgcca aagggaaatt ctataacata tctagcaaag
       61 tcaggcgaga taccctttaa gttttcaata acacgttctc ctacttctcc atatacttgc
      121 ctaatctttt caagccctct atcatatctg tcactattca ttacgtccaa aattcacacc
      181 agctaaatca aaaacgtttt atggttttgc tttggcacaa tagttagggt agaagatcct
      241 ttaacgaatt taacgacaaa agttgtatct actttgtact tatataactg cttgattata
      301 ttcattacca ttctccaaaa aagttattca ttgatattat ttgctcatct gttatcacat
      361 gactatataa attcattaga gcatttataa tttgattact ctcttgtgga tgcagtggca
      421 atcttcgtga aaattttatt aaagcaagaa aaatgcaagg cttgtacaaa cagaaaagaa
      481 agcaatagat gaggtagaac caataacaga ggtattcatg aatatacttt ctggcaaatg
      541 caaaatgatg tttcacgttc acaaacaaga tgacattatg gttttgcttc aattagtaaa
      601 agaatttggt ataaaagaag catcgctaac cattgcattg atgtacatag acaggaagtg
      661 tttgaagtgc taaggggctt caataccagt aatacacggc cctggatgcc ttcccacata
      721 aagtagaatt aaaacatgaa agctgggact actgttaaaa tctcatgcaa aattctcact
      781 tatggatgat catcctacaa ttgcaaacac acctcactat gtgctagtaa aagagagaaa
      841 gaaaacaata attagaacta cgttatacac cacatgtatt attttatttt ctgttgaata
      901 tgtagaataa tcaagatgtt caagtatgca aggagtagtt cttcattatg gcttgacaac
      961 aaattatttg atttttggtt gtttgaatcg acattaggaa gagatcaaat aacgagaaga
     1021 aagatatgaa ttagttttct agacacttgt ttcgaacagc aacgaaaatt aaacttagca
     1081 aagttgaaga gttaaatggc gaagatccaa ggtcattgaa atgggagcga gaggcaagtc
     1141 aaataggaat agcatactaa ttacaggtgt caagggtgtc aattagctct tatatgcagt
     1201 attaaatact accaagaaga agactatgct aatccaattt catatgactg aaactcttgt
     1261 tattccagat atctttaata ttcatcactt cacatatacg ctttcattta gaatcaattc
     1321 gaatatgata aaatcaatat cgtggcataa aaagatacat gccattaata ttggttagcc
     1381 tttatgttag gaagcttcat ggttaaggcg aatgtatttt gacaacaata aacgaagaaa
     1441 cagtgagtct tgttgtcata ttatcatttt cttttcattt gcataactta gccttgttaa
     1501 agtttaagga gaaaatacca gcacttgatc agctgtgcgg tcagtcaaat atataactcc
     1561 tttcgaattc acatcaatat ctatgttatc ggttgcgcca ataggtgtgt tgatagacca
     1621 tttattgata aatttaccat cgctagtaaa ctcctgtata cgaccattac cagtgtcaac
     1681 tacatagaca ttgccttgag ggaataccac agtcatacca gttggattat agaactgacc
     1741 attaccacta cccagagagc cccatgtcct aaggaacttt ccattttcat caaacttttg
     1801 aacacgattg ttgccaaagt cagctacaaa cacattcccg gcaggatcaa cagccacacg
     1861 accaggatta gcaaattggc caggaccaga gccaagagag ccccattgcc caacgaacaa
     1921 accattactg gaaaaccttt caacacgatt gtttcctaca tcagttacgt agacattttg
     1981 cttggattcg tcttcatcaa tgcctatcgg agtttgaaat tggccaggac cagagcctga
     2041 agaaccccac atagttagga acttaccgtc gctagtaaat ttttgaacac gatcgttgcc
     2101 ggtatcggtt acatatacat aaccacgtgt ataatctaac gtaataccta ctgcgctatt
     2161 aaattggcca ggaccagagc ctgaagaacc ccatgtccta attactgtac cattgctgtt
     2221 aaactcaact atacgattgt tgccactgtc tacaacgtat gcattacctt taaggtcaag
     2281 tacaatacct gccggatcgt caactttcaa tgtttttatt actgattgtg cgtgtgctgg
     2341 taaatacatt gaactgctta
//
LOCUS       DASQSJ010000303         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_235261, whole genome shotgun sequence.
ACCESSION   DASQSJ010000303 DASQSJ010000000
VERSION     DASQSJ010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235261"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..514
                     /locus_tag="VE223_05980"
     CDS             <1..514
                     /locus_tag="VE223_05980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21173.1"
                     /translation="IHRELPAPIRINEKKFRNTLSDSNTILITLRINDKSGEIVGYAK
                     GGSLENYQLRRGTYDENLGKNNTAYMEYISIKPGYWGARGGHLLRVEFLNQAKQRGYA
                     FVTSYVHRHVIAHRINEGEEIEIVQKYDPDKLDYYRIDLSKLVISNVAQPKVLQANLG
                     LDENLPAGIE"
     gene            889..1518
                     /locus_tag="VE223_05985"
     CDS             889..1518
                     /locus_tag="VE223_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HZC21174.1"
                     /translation="MSVEEEGNVIIKYLSQSDPCLGEVIRTVGKYSIKIHNDPFQSLV
                     KSIIYQQLAGRVAGVIYGRFIKYYNDSPPLPEQILSTPDSVLKSLIGLSTKKVQYIKD
                     LSARVTERKLDLVMLSEMKDEEIIVQLMQVKGIGRWTAEMFLIFCLGRLDVLPVTDLG
                     VRKAMQKIYSLPNLPKQSEMLAISQPWKPYRSVATWYLWKSIPMFNSVG"
     gene            1648..2517
                     /locus_tag="VE223_05990"
     CDS             1648..2517
                     /locus_tag="VE223_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HZC21175.1"
                     /translation="MSKKIPITTNLIKKIMVPRLESSKKGDNGTVLVVGGSRIYHGAP
                     ILASLAALRSGTDLVYTAVPRSNIVVTRSASPNIIALPLPDDKLTTGSANRLMATLPK
                     RADSAAIGMGMSISKPEALIALVKQLKSDGTKLLLDASALIPDVLKEISRTDTIITPH
                     AGEYKRIFSGEDPGTTEEERISNTNRLAKQYGITIVLKGWIDVISDGHYVVINKVHNC
                     AMTVGGTGDILSGLTAGFLTKLKPFEASILGVYFNGVAGNLVYSKMGLHISASDLVEC
                     LPEAIKPFDVIRG"
     gene            complement(2507..>2697)
                     /locus_tag="VE223_05995"
     CDS             complement(2507..>2697)
                     /locus_tag="VE223_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21176.1"
                     /translation="KHDKNSNTIIIQSKPESKPVLPWAVLLTLYLKYTGNDSKIIQSS
                     KQGSCAQIICIKLSKPIP"
BASE COUNT          900 a          466 c          542 g          789 t
ORIGIN      
        1 tatccataga gaattacctg ctccaatacg tataaacgaa aaaaagttta gaaatacgct
       61 atctgacagt aacacaattc ttatcacttt aagaatcaat gacaaatcag gagaaattgt
      121 tggttatgca aaaggaggat cactggagaa ttatcagctc cgacgtggaa catatgatga
      181 gaatttagga aaaaacaata ctgcatatat ggaatatatt agtatcaagc caggttactg
      241 gggagcgcga ggaggtcatc ttcttagagt tgagttcctc aatcaggcaa aacagagagg
      301 atatgctttt gtaaccagct acgtacatcg tcacgttata gcacacagga taaatgaagg
      361 cgaagagata gaaattgtac agaaatatga cccagataaa cttgactatt ataggataga
      421 tttgtctaag ttagttatca gtaatgtagc tcaaccaaag gtattacaag caaatttagg
      481 attggatgaa aaccttccag caggcataga atagagaaca gagtggctta tttttttgca
      541 ttgtttttgc taaagtattc cttaccgccc cagcaagtag caagttaatc tttgaatgtc
      601 ttagatccat aagaagaaaa gaaaatctgc aattcaattt ttaagcgtaa gacaaccttt
      661 tcttgcttac tttatgatga tgatcaggac caaatctttc gtttgcatgg tgttaattct
      721 tttgtgtcgc attcaaccat tgcactaact ccctaactcg ccccctaata tgataagcaa
      781 tggtaaccgt tatactgcgt ctacatccgt atttgctaat gctgtcaatt tagggctgat
      841 cctatactca gagcaatttt aaagtacaat gatattcgca gcactatcgt gagtgttgaa
      901 gaagaaggaa acgtcattat caaatatctc tcgcaatctg atccatgtct aggagaggta
      961 attagaacag ttggaaaata ttcaatcaaa atacacaacg atccatttca gtccctggta
     1021 aagtcaataa tctatcagca gcttgctgga agggttgctg gcgttattta tggcaggttt
     1081 ataaaatatt acaatgattc tccgccttta ccggagcaga tactttcaac tcctgattca
     1141 gtattaaaat cgttaattgg actatcaact aaaaaggtac aatacataaa agacctatct
     1201 gcaagagtaa cagagagaaa acttgacctt gtaatgttgt ctgagatgaa agatgaagaa
     1261 atcattgttc aattgatgca agtaaaagga attggaagat ggacagcgga aatgtttttg
     1321 atattttgtc ttgggcggct agacgtctta ccagttacag atctaggtgt aagaaaagcg
     1381 atgcagaaaa tatattctct tccaaatctt ccaaagcagt cggaaatgct agcaatatct
     1441 cagccatgga aaccctatag aagtgttgca acatggtatt tatggaaatc aatcccaatg
     1501 ttcaattctg taggttaggt actttgtata aaaataagaa agagattcga aaacgaagaa
     1561 aagaacaaga caattggcct gtgctcttca atctataact taatctatta gtatattttc
     1621 tgacaagaag gagaaaaagt gcttagcatg tcaaaaaaaa ttccaataac gaccaatctc
     1681 ataaaaaaaa tcatggtccc gcgtttggaa tcttctaaaa aaggtgacaa cggtacagtt
     1741 ctcgtcgttg gcggaagcag aatataccat ggagcaccta tacttgcctc tctggctgct
     1801 ctgaggtcag gtacagatct tgtatatact gcagttccaa gatcaaatat tgtagtcacg
     1861 cgatctgctt ctccaaatat catagcatta ccattacctg atgataaatt gacaacagga
     1921 tcagcaaata ggcttatggc aacgcttcca aagagagctg atagcgctgc tataggtatg
     1981 ggcatgagta tatcaaaacc tgaagccttg attgctcttg taaaacagct aaaaagcgat
     2041 ggaactaaat tattattgga tgcttcagcc cttatacccg atgttttaaa agaaatttca
     2101 aggactgata caatcattac gccacatgcc ggcgagtata aaagaatttt ttctggagag
     2161 gatcctggca caactgaaga ggaacggatt tcgaatacaa acagacttgc aaaacaatat
     2221 ggcattacaa tagttctcaa aggctggatt gacgtaattt ctgatggcca ctatgttgtt
     2281 ataaataaag tgcataactg tgcgatgact gtaggaggaa ctggagacat attatcaggt
     2341 ttgacagccg gtttcctaac caagttaaag ccatttgagg cttctatttt aggcgtgtac
     2401 ttcaacggcg ttgctggaaa tttggtatat agtaagatgg gtttacatat ctcggcatct
     2461 gacttggtag aatgtttacc cgaagcaatt aagccatttg atgtaatcag gggataggtt
     2521 ttgacagttt aatacagatg atttgagcac atgaaccttg cttagaactt tgaattatct
     2581 ttgaatcatt acctgtgtat tttaggtata aggttagcaa aactgcccat ggcaaaacag
     2641 gtttgctctc tggtttagat tgaatgatga ttgtattgct gtttttgtca tgtttta
//
LOCUS       DASQSJ010000304         5843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_57693, whole genome shotgun sequence.
ACCESSION   DASQSJ010000304 DASQSJ010000000
VERSION     DASQSJ010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5843
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57693"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VE223_06000"
     CDS             complement(<1..268)
                     /locus_tag="VE223_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21177.1"
                     /translation="MSYTFRINQDTADKLNAESEHKGISLNNLVNQILKNYIDWDRLE
                     SKAGMIPVAKPIIAEGFRHLSDDDVIKLATCVGKDTLHDIVLFMK"
     gene            complement(503..1438)
                     /locus_tag="VE223_06005"
     CDS             complement(503..1438)
                     /locus_tag="VE223_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21178.1"
                     /translation="MIVPNVYAQEKNFTIIENKLFKISSGNLILVGSVLNTGKIPAQV
                     LIGYKVTDKISGSVTILKTPLYSTIIYPFEVVPFKLIINSSIGNHLGVPDAKPFILNA
                     RYKLVPKYNNILVLNYSSIPFGDNRSLVGEVKNNSPFDMNNVVLYASAHSKNGTQIDS
                     VKSTRFPIIKAGQTLKFSAFPNQDIKSQIYSYSCVGADLQDAMSYRLVEVGQKQTVGY
                     KLTGLATIDDIKYINSTDSITFRINNYYSTPGPMELMIMPKLSEKQHVSLIMDGKVYK
                     NVVETTSNGKEILINFLIPQGEHQFQVTGISRVHL"
     gene            2030..3595
                     /locus_tag="VE223_06010"
     CDS             2030..3595
                     /locus_tag="VE223_06010"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HZC21179.1"
                     /translation="MLLPNIINSRSFAILSPNAPSTTTTSMTTPEIFLSPSPSQLTPN
                     LEQSHQQSKAMSMNPMDLNFVLGPGFSDVAMQTAQTMAKQGAHVKKVTLVAYEEDVTL
                     PQGNKIHAFTFNGTVPSPTIRMTQGDILNVTMINYPKNKLIHSLDHHASIISAVPNFG
                     PVNIGSKKTFAFVATQPGFFKYHCEGNGVLGMDQHVFSGMSGGVIVDPAKGYTGYTFP
                     TYDDKGNQVNKTVSPNAKEITYVFSEWYLDKAGNYNQTAMNEHLPTYTSINGIPFGYD
                     PVVTKTKNAMPIHIKQGDHVRFFLLNIGDEMVNFHIVGEQLDRVTDGQVVSGWGKQTY
                     LLGGSNDAIIDVVFNKPGAYAPVNHDYADLFKGQASIIVVDGPNGQPGKSLGLKNYKN
                     PSNAVAPMGKNSIAMETTPYYLGAPIKWNGQNNTAATPILANATATTPSAAQPGTQAP
                     VPPQQAPTPKPVPGSNATGPGGGAGSLGNLTTPSGGNPAVPRAGNAPGNAPPTGGNSS
                     TGSSSNSIPGIAP"
     gene            complement(4003..4875)
                     /locus_tag="VE223_06015"
     CDS             complement(4003..4875)
                     /locus_tag="VE223_06015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21180.1"
                     /translation="MQIQKQKAIAIPLIFIGVLILILDFLSYQSFQPLVITDENSVLI
                     QKVSYIFYMLLFSGVVLIALGFLKMIRVFHNVNDYQPSPTNMHPPSLFKIIVSIVNDR
                     KYFRFFWPASIGYAVFYATISGMLIYRSDSFSSLYGVTIPSITMITYGPMGYVPTMAA
                     YFTEHIGLLIMPINFFIILIVSALVGFNAVISIYAFDNRPKRSAATTTTTAHFLGAIG
                     VTTSLFAACPTCASFYLFTIMAGSLAPTVAAFTATFYAVFIALSIPLLIVTPFLTALS
                     LRRALFSRCSLREE"
     gene            complement(5146..>5843)
                     /locus_tag="VE223_06020"
     CDS             complement(5146..>5843)
                     /locus_tag="VE223_06020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21181.1"
                     /translation="ISVSEAFELVRRWNAKESYIVHYRGLSDFEEATNQWFRGPVKAM
                     TTNELQKIIDSHLQIIGSEGKFKMTVAQEGMVWDSNKSLAQSRQEKEQLQEDSSGQNA
                     PQFVEIESLQNYIFRIEKERNDDKLKLMIEDRINRFNFEFDKPRTTENAVDNKDVLIA
                     QGVKGMLAKGPELRIEIIPQPENSEYYIRIRASKGKKNVFNDDILINNRDAQRLKRYI
                     KENFMPSVSAAKK"
BASE COUNT         1847 a         1090 c         1007 g         1899 t
ORIGIN      
        1 ttttcataaa taacactata tcgtgcaatg tatccttgcc tacacatgta gctagcttta
       61 tcacatcatc atcgctcaaa tgtctgaatc cttctgcgat tatgggttta gcaacaggta
      121 tcattccggc ttttgactca agcctatccc aatctatgta gttttttaga atttgattta
      181 ccaagttatt tagactgatt cctttatgtt cagactcggc gtttagtttg tcagcagtgt
      241 cttgatttat acgaaaagtg taactcatac tcttttttac cagcttcata tccatattgt
      301 aaattttgca tgatatttaa aaatagtatt ttatctactc tttgtattat attcatttga
      361 aaggttgtac cgatacattt ttgcaatatc aattgagttt tcctagttta ttataaaaac
      421 agattttata gttacattaa ctcgaatttt gtcattggat tcattggaag gactgtcagc
      481 attaattaga attatgtggt tatcataaat gtactctact aattccagtt acttgaaatt
      541 gatgttctcc ctgtggaatt aaaaagttta ttaatatttc ctttccattg ctagttgtct
      601 cgacaacatt cttgtatact ttaccatcca ttattagaga gacatgttgc ttttccgaga
      661 gtttcggcat gatcatcaat tccatgggtc caggcgttga ataataatta ttaatcctga
      721 atgttatgct atctgtggaa ttgatgtatt taatatcgtc aatcgtggca aggcctgtaa
      781 gtttatagcc gacagtctgc ttctgtccaa cttcgactaa gcgatacgac attgcatctt
      841 gcaagtctgc tcctacgcag ctataggaat aaatctgtga tttaatatcc tgattaggaa
      901 aagcagaaaa ttttagtgtt tgaccagctt taataatagg aaacctagtg cttttcacag
      961 aatctatttg cgtcccattt ttgctgtgag cagaggcata taagactaca ttattcatat
     1021 cgaacggtga attgttcttt acttctccaa ccaaagatct attatcgcca aaaggaatac
     1081 tgctgtagtt taaaacaaga atgttattgt atttgggtac taatttatac ctcgcattta
     1141 aaatgaatgg tttcgcatcc ggcactccta agtgattgcc aatactagaa ttaattatta
     1201 atttgaatgg aaccacttca aatggataaa ttatagttga gtataaagga gtcttcaaaa
     1261 ttgtaacaga accgctaatc ttatctgtga ctttgtaacc tattaaaact tgagcaggaa
     1321 tcttgcctgt attgaggacg gagcctacca ggatcagatt accactagag atcttaaaca
     1381 acttgttttc tattatagta aaattttttt cttgcgcata gacgtttggc actatcatgg
     1441 caagagtgat gcacaacaaa gtgcaaacaa cgataaagaa gactatgctt cttgagtcct
     1501 gatttttttc tcgtataacc acagattgca agtaaaagaa gtatttcttt tgtgaatata
     1561 aatacacatt gatccagtag gcaatctttg aaattctgtt aatccggcat cttttttatt
     1621 attattgtaa aggcgcattt cttgtatctt ctttcctatg aaggcattag atacaatata
     1681 tcgattaggt ttcttggagt cttttaagat cagccgttac agataaactg tccaataata
     1741 cggtttatct gtaactaagg ccgttattgc tggaatactg tactaatata aatcgtataa
     1801 taaatgttct cgttgatatt ttagccgcat catggtgttc actaatagaa attgtgaagt
     1861 tatcaaatgc aaatgcagaa atacttgtac atttttactc ccttttttag gtgttgaatt
     1921 gattagagaa ttctaataga atagtttata aaagtcaaat aattatcatt gggcaatgag
     1981 gagccgtttt agtatctctt tgacagcatt cattctcatt tcgggtttga tgctgcttcc
     2041 aaacatcata aatagtcgaa gtttcgccat attatcgcca aatgcgccat caacaacaac
     2101 aacgtcgatg acaacacctg aaatattctt atctccatca ccgtcacaac tgactcctaa
     2161 tttggaacaa tctcatcagc aatcaaaagc catgagtatg aatcctatgg acttgaattt
     2221 tgttcttggt ccagggttta gtgacgtagc aatgcagact gctcaaacta tggccaaaca
     2281 aggggcacac gtaaagaagg ttacactcgt agcctatgag gaagatgtta ccttaccgca
     2341 gggcaacaaa atacatgcat ttacatttaa tggaacagtt ccgtcgccta cgatcagaat
     2401 gacacaagga gacattctaa atgtcactat gatcaactac cctaaaaaca aacttataca
     2461 cagtttagac catcatgcct caataataag tgcagtaccc aattttggac cagtcaatat
     2521 cggatcaaag aaaacttttg catttgtagc aacgcagcca ggattcttca agtatcactg
     2581 tgaaggaaac ggggtgcttg gaatggatca gcatgttttc tctggaatgt ctggaggtgt
     2641 catagttgac ccagcaaaag gatatacagg atatactttt cctacctatg atgataaggg
     2701 caaccaagta aataagaccg ttagtcccaa cgctaaagaa ataacctatg ttttctcaga
     2761 atggtatttg gacaaagctg gaaactacaa tcaaactgca atgaatgagc acctaccaac
     2821 atacacttca attaatggta ttccatttgg ttatgatcca gtagtaacca aaacaaagaa
     2881 tgctatgcct atacacatca aacaaggtga tcacgtaagg ttcttcttgc taaatattgg
     2941 agacgaaatg gtaaacttcc atattgtcgg tgagcagctt gatagagtaa ctgatggcca
     3001 ggtagtcagc ggatggggta agcaaactta cctgcttggt ggatctaatg atgcaataat
     3061 agatgtagta tttaataaac caggtgcata tgcaccagta aaccatgatt acgcggatct
     3121 ttttaagggt caagcaagca ttattgtagt agatggtcct aacggacaac caggcaagtc
     3181 tctaggtctt aaaaattata agaatccatc aaatgcggta gcaccaatgg gtaagaatag
     3241 tattgcaatg gaaacaacac catattactt gggagctcct ataaagtgga atggacagaa
     3301 taatacagct gcaacaccta tcttagcaaa tgccacagct acaacaccat cggcagctca
     3361 accaggtacg caagctcctg tgccacctca acaagcacca acaccaaagc cagtaccagg
     3421 atctaacgct acaggtccag gaggtggtgc tggatcgtta ggaaacctaa caacaccatc
     3481 cggtggtaac ccggctgtcc cgcgtgcagg taatgcgcca ggtaatgctc ctccgacagg
     3541 aggaaacagt agcactggaa gcagtagcaa tagtataccc ggaatcgcac catagactaa
     3601 ttgcaacacc agaatttttc ctccatttat ttttttatgt tataaaagtc ccgtttgcat
     3661 gtttgcaaga attttttcaa gagctagtgc atagaggcat catcttcttc agctgactat
     3721 gtggtagaat agataatcat aaatgccatt ttatttttat tttttacaag agtaatagaa
     3781 tttcaggatt attttatttg tacgcagcat aggaacataa cctatcatta gtagtaaaac
     3841 aaggaaatgc atagatcatt gttttacatt cattctatac gatactgaaa ggattaatca
     3901 gaaattaaca ttttataatt cgcaattata tatagtatta ttattgccaa aaggaatact
     3961 agttctactg atataattta tattgacttg atttatttct tttcattctt ctcttaatga
     4021 acaacgactg aacaatgccc tacgaagact tagtgcagtt agaaatggag ttactataag
     4081 caaaggaata cttagagcta taaatacagc ataaaaagtt gcagtaaaag cagctactgt
     4141 aggtgctaga gatcctgcca tgattgtaaa taaataaaat gatgcacacg ttggacaagc
     4201 cgcaaataag ctcgtagtta ctcctatagc acctaaaaaa tgcgcagtag tcgttgtggt
     4261 agcagcagat ctcttgggtc gattatcaaa tgcatatata gaaattaccg cgttaaatcc
     4321 aactaatgct gaaactatta ggataataaa aaaatttatt ggcataatta gcagtccgat
     4381 atgttcagta aagtaagcgg ccatcgtggg aacataaccc attggtccat atgttatcat
     4441 agtaattgag ggaatcgtta ctccgtacaa agatgaaaag ctgtcgcttc gataaatcaa
     4501 catgcctgat atcgtagcat aaaataccgc ataaccaata cttgctggcc agaaaaatcg
     4561 aaaatatttc ctgtcgttta ctatgctaac aattatttta aataaagaag gcggatgcat
     4621 atttgttggc gatggttgat aatcgtttac attatgaaat actcgaatca tcttaaggaa
     4681 tcctaatgct atcaagacta ctccactgaa tagtaacata taaaaaatat aacttacctt
     4741 ttgaatcaat accgaattct catctgttat tactaaaggt tgaaatgatt ggtaagagag
     4801 aaagtctaaa atcagaatta acacccctat gaaaattagg ggaatagcta tagctttttg
     4861 tttttgtatt tgcatatttt attggcctct tcttttatag aatacatgct tagtgtcatt
     4921 tgaatttact ctaaattcat attggccata aagtgcgatg tagtatatcg ttattatcaa
     4981 ctatcgacca caattagact atgttcttgt aactccaaat atcctaaaga aggtattgct
     5041 tggctcctta tgtaattatg aatcccaact taaatctgat catattttct atctatgcta
     5101 atgcaatgca tttcatctat aagtacaaat aactgttata tcttctcatt tcttggcggc
     5161 cgaaacacta ggcatgaaat tctctttgat atatctcttt agccgttgtg catcacgatt
     5221 gtttatcaat atatcgtcat tgaatacatt cttcttaccc tttgaggctc ttatcctaat
     5281 ataatattca ctattttcag gctgaggaat gatttcaatt ctcagctctg gacctttagc
     5341 gagcattccc tttacacctt gagcgatcaa tacatccttg ttatctacag cattttcagt
     5401 tgtccgtggc ttatcaaatt caaagttaaa tctattgatc ctgtcttcta tcataagctt
     5461 caatttatca tcattgcgtt ccttctcaat tctaaaaata tagttctgca gactttcgat
     5521 ttcaacgaat tgaggagcat tttgacctga agaatcttct tgtaattgtt ctttttcttg
     5581 tctgctttgt gcgagacttt tattactatc ccataccatt ccttcttgag ctacagtcat
     5641 cttgaatttg ccctcacttc cgatgatctg aaggtgtgaa tctataatct tttgaagctc
     5701 attcgttgtc atggctttaa caggacctct gaaccattga tttgtagctt cttcaaagtc
     5761 tgatagtccc ctataatgaa ctatataaga ttcctttgca ttccatcttc taacgagttc
     5821 aaatgcttca ctaacagaga tca
//
LOCUS       DASQSJ010000305         7337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_36578, whole genome shotgun sequence.
ACCESSION   DASQSJ010000305 DASQSJ010000000
VERSION     DASQSJ010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7337
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36578"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1377)
                     /locus_tag="VE223_06025"
     CDS             complement(<1..1377)
                     /locus_tag="VE223_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HZC21182.1"
                     /translation="MAGVTEFNNSKTNLIMQIRKRDGRIVSFVRSKISDAIYKALVAT
                     GKPDYPLAERLANKVVQKMVQQGYDSVEKDEIPSVEDVQDMVESILIEEGLSDTAKSY
                     ILYRHERRKIRDDKMKVLNKRDLDEVDKAFDVNSLRVLAARYLLRDNNNEIIEGPKLM
                     LERVAILVAIPDIMHDSRVFNLAGGCTQNIEEAENYYAKIDDFDLKLKIGDFYLNKYH
                     FESLIRHYISLAKSGQMRVSFKELLRLIVEGKLAMYQERIKEYYDLMVSRDFLPNTPT
                     LMNAGARLGQLSACFVLDMQDDMYKIMKSSTDAAMIFKSGGGVGINYSDLRPEGDIVA
                     STSGVASGPTSFMRIIDTITDVVKQGGKRRGANMGILETWHPDIEKFITAKTKPGVFE
                     NFNVSVGIWGDFWQSLVNKGSNHKYTLRNPRTREPTKQIDSHQLLDLIALSAWRSAEP
                     GVIFFDNIN"
     gene            complement(1767..3932)
                     /gene="nrdD"
                     /locus_tag="VE223_06030"
     CDS             complement(1767..3932)
                     /gene="nrdD"
                     /locus_tag="VE223_06030"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HZC21183.1"
                     /translation="MEQLSHDYSSQTESRRDELEPRRGGVLESASKRVRMIFSVMASP
                     NRIDILRILNSKGPLTYSELKALAGFKSKKESGKFAYHLRKLLRQSLVALNKGERRYT
                     ITNLGKLVLSLARQIEQRSIIESGKMYVRTSKHSIEEFNSLKIIQSLVREANMPLEQA
                     HKITEEVENKIYKFQTAYLTSSLIRETVNSVLIEHGHEEYRNKMARIGIPASDILELL
                     NNIDTSKNGVESLLSKVSRSVFSEYLVNNTLTKDIADMHLAGEIHISNSGIWGLIPDT
                     IFLDIADFDSGMDFKDKFLNVSRIPALRNSDDFVTSLPILISLLSREACSEIVLDGII
                     PLLLKHIKEPDKIESQFARLLLGSSAAPSNSLSGLPVTTLTVPAYEFDCRIINALLDG
                     YRKYVDSTPVPRIGISLNYNNTSNNLNEHSEHITTTLRAGGIISISRNGSRASNGICK
                     SINGKSSGTVMTLQSLSINLPRLAYQSNNDETYFRAKLALMIKPALAAMSMRKNVIAD
                     HIRKGMAPVLASSTQFMQLVTTNILINLTGAKESVYDILGYDPNNGGIEVLQKVLKTA
                     VDVTMDQGKHIGEHSAGIAMIYDDSAERFANLDSDKYGKISLISPLQYNKRAYSQGLT
                     LNGKDLLLSNDKGASIINDCISINNLLNGGLSVILDVSDLSSSNTEIRTAIELASQLQ
                     FFRPNLNLLVCNGCGKRTKTQFIEKCEFCKSPYLSPICL"
     gene            complement(4038..4664)
                     /locus_tag="VE223_06035"
     CDS             complement(4038..4664)
                     /locus_tag="VE223_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21184.1"
                     /translation="MDKHQQQQQFKSDIVNASLVLNNQLTRLRMLDKKFTAMDRDLRN
                     QIAANIKSDNNDRAKAIANELANIRHVKRTTQNMSLALEVVVIRFSTINEFAMILETI
                     NPTIEMIKDIQKDVSKAVPTASEVLSEMSSVTSDVLINSNIKPETKVPISLPVDTEAL
                     SILNEVEGILENEAKAKLPEVPNSIHDVKMKQVTDQHVIEDNQIMIEG"
     gene            complement(5535..5936)
                     /locus_tag="VE223_06040"
     CDS             complement(5535..5936)
                     /locus_tag="VE223_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide-binding protein"
                     /protein_id="HZC21185.1"
                     /translation="MSETKQNQQKNLSSREKFIQSANRGKLLANKCLRCAHIMLETIY
                     YCEKCSGNKFDSVEYEGIGKTVTYTIQAVAPEGFEDTESYAWVVFGVDNAPFRASGFL
                     PGVKSSKDLAIGEKVKVVGFNPNHGLILQKI"
     gene            complement(5945..7105)
                     /locus_tag="VE223_06045"
     CDS             complement(5945..7105)
                     /locus_tag="VE223_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HZC21186.1"
                     /translation="MTNKVCILGAGSTKYGKLNESIIEIALNASKDAIDSAGITPKDI
                     QAGYISNVFGVADRQVHMAPVIMSNLGIPHVPGLTIESACGSGSIMFREAYANIAAGF
                     YDCVLAVGVEKITHTGTTQSTTLFSYCSDFFYEGGNGASFPGLFASMARVYMTAYKAS
                     EEDLAHVAVKNHENGILNPKAHVRRKITVDDVLKSPVVASPLKLYDCCPFSDGASAVI
                     LCNEEYAKKSARPYVEVIGSGRGASPAAVQAREDITTIPSTVAAAKQAYKMANIAPKD
                     IDFAEVHDCFTIAEIIDIEDLGFFPKGTAAYSIREGATRRNGEIPINPSGGLKSKGHP
                     IGATGIGQVVEVFEQFTGKAGDREIRNAEYALTHNFGATGASSAVHIFRRME"
BASE COUNT         2255 a         1426 c         1214 g         2442 t
ORIGIN      
        1 gtttatatta tcaaagaaaa taactccggg ttcagcactc ctccatgcac taagtgcaat
       61 cagatccagt aactggtgtg aatcgatctg ttttgttggc tcgcgagtcc ttgggttacg
      121 caaagtatac ttgtgattgc tacccttatt cacaagggat tgccaaaagt ctccccagat
      181 gcctacgctt acgttaaagt tctcaaacac accaggtttt gtcttggcag ttatgaattt
      241 ttcaatgtct ggatgccatg tttcaagaat acccatattt gcgccacgtc tttttccacc
      301 ctgcttcact acatctgtaa tagtatcaat aatcctcata aaggaagttg gaccagacgc
      361 gactcctgaa gttgaagcga caatatcgcc ttcaggtcgc aagtcagaat aatttattcc
      421 tactccgccc cctgatttaa agatcatggc cgcatctgtt gatgatttca tgatcttgta
      481 catgtcatct tgcatatcaa gaacaaaaca tgcggacaac tgacccagtc ttgcacctgc
      541 attcatcaat gttggtgtat tcggaagaaa gtctcttgat accattaaat cataatactc
      601 tttaatacgt tcttgataca ttgctaactt tccctcaacg atgagcctaa gcagttcctt
      661 aaagctgact ctcatttgcc cagactttgc gagagaaata taatgtcgaa ttaatgattc
      721 gaagtgatac ttgttaagat aaaagtcacc aatctttaac ttcaagtcga agtcgtcaat
      781 ttttgcataa taattttctg cttcttcaat attctgggta catccgcccg ccaaattgaa
      841 cactcgtgaa tcatgcataa tgtctggaat tgcaacaaga atggctactc tttcaagcat
      901 cagttttgga ccttcaataa tttcgttatt gttatctctt aggaggtaac gtgctgctaa
      961 gactctaagt gaattaacgt caaatgcctt atccacttca tcaagatccc ttttatttag
     1021 aaccttcatc ttgtcgtcac gaatcttgcg tcgctcatgt ctgtacagaa tataagactt
     1081 cgctgtatca gacaaacctt cctcaatgag tatagattct accatatcct gtacatcttc
     1141 aacactcgga atttcatctt tttcaactga gtcatatcct tgctgaacca tcttctgtac
     1201 aactttgttt gccagccttt ctgccaatgg ataatctggt ttacctgttg ccacaagtgc
     1261 cttatatatt gcatctgata tcttcgaccg tacaaaactt acaattctac catcccgttt
     1321 tcttatttgc ataattaaat tcgtctttga gttattaaac tcggtgactc ctgccatctg
     1381 tttataaagg aaaaagatta gcttaaaagc attatctaat taaaaaataa tgattcatgg
     1441 gtgtaaatat taaatataac attttagtat aagatgatga tcaaatgtat gatcgacaat
     1501 ttcaatgatg taaaaattca ttgttttcat ttaagctgaa ggattttatt tattatgtta
     1561 tatgcattat gtaaggactt tgtctaattt atgctattat atgtatttat agtttggtgt
     1621 tccgcgtgaa ctaatccaca ttataaatgt aggatgaaat tgaatttttg atttactgtt
     1681 acacagtaac aatataacta atgtgtttga cgtttaaccc aaacacatta agtatatgtc
     1741 catgtgttgc tagtgtgaga ccattgctat aaacaaattg gcgacaggta aggcgatttg
     1801 caaaattcac atttttcgat aaactgtgtc ttagttctct taccgcatcc attacacacc
     1861 aaaagattaa gatttggacg gaaaaattgc agctgtgaag ctaattctat tgcagttctt
     1921 atttcggtat tagaagaaga aagatcgctt acatccaata ttaccgatag cccaccattt
     1981 agcagattat taattgaaat acaatcatta attatagatg cacctttatc atttgataga
     2041 agtaagtctt tgccattcaa tgtaagtcct tgtgagtaag cacgtttatt atattgtaga
     2101 ggtgagatta aagagatctt gccatattta tcagaatcaa gatttgcaaa tctttctgca
     2161 ctatcatcat atatcatagc aattcctgca gaatgttctc caatatgttt accttgatcc
     2221 atagtcacat caacagcagt cttcaatact ttttgtaaaa cctctattcc accgttgttt
     2281 ggatcgtatc ccaaaatatc atagactgac tctttagctc cagtaaggtt aattaaaata
     2341 ttagttgtca caagttgcat aaattgggtg ctactggcaa gtacaggggc cattcccttc
     2401 ctaatgtgat ctgctattac attctttctc atcgacattg cagctaatgc aggctttatc
     2461 ataagtgcaa gttttgcccg aaaataggtt tcatcattgt ttgattggta cgcaagtctt
     2521 gggagattaa tcgacaatga ttgtaaagtc atgactgtgc cagaactctt accgtttata
     2581 gatttacaga taccattgct agctcttgat ccatttctcg aaattgagat gatgccacca
     2641 gcacgtaatg ttgtagtgat gtgctctgag tgctcgttaa gattattact agtattatta
     2701 taattaaggg atatccctat tctggggaca ggtgtagaat ctacatactt tctataacca
     2761 tccaacaatg cattaattat tctacaatca aattcatatg ctggaacagt taaagtagtg
     2821 acaggaagac cggataaaga attagatgga gctgcagaag aacctaatag caatcttgca
     2881 aattgtgatt caattttatc tggttccttt atatgtttaa gaagtagtgg aataatccca
     2941 tccagtacga tttctgaaca agcttctcga cttagaagtg atattaggat gggtaaagag
     3001 gttacaaaat catcagaatt tcttagagca ggtattctgg agacattcaa aaatttgtct
     3061 ttaaaatcca taccactatc aaagtcggca atgtctagga atatggtatc agggattagt
     3121 ccccagatgc cactattaga aatatgtatt tcgccagcca agtgcatatc tgctatatcc
     3181 tttgtaagtg tattgtttac cagatattct gaaaatacag aacgtgaaac ttttgataat
     3241 aaactttcaa ctccgttctt agatgtatct atattattta acaactctaa aatatcggat
     3301 gcagggattc ctattctagc catcttgttt ctatactcct catgtccgtg ttcaatcaaa
     3361 acagaattta cagtttcccg aattaatgac gaagtcaaat atgctgtctg aaatttgtat
     3421 attttatttt ctacttcttc tgtaatttta tgggcctgtt caagtggcat atttgcttct
     3481 cttacaagag actgaattat cttgagggaa ttgaattctt caattgagtg tttacttgtc
     3541 ctaacataca ttttgccact ttcaattatt gatctttgtt ctatctgtct cgcaaggctc
     3601 agtaccaatt tgcccaaatt tgtaattgta taacgtcgtt cacctttgtt aagggcaaca
     3661 agtgattgtc tcaggagttt tcttaaatga taggcaaatt taccagattc tttcttagat
     3721 ttaaatcctg caagagcttt tagttctgaa tatgtaagtg gtcctttgga atttaaaata
     3781 cgtagaatat caattctatt aggactagcc ataacagaaa aaatcatcct gacacgtttt
     3841 gaggcagatt ccaaaactcc acctcgccta ggttctagtt catctcgtct agattcagtt
     3901 tgagacgaat aatcatgact caactgttcc attgcacccc atatcctgac taaatgatta
     3961 aaactacttt gtatataatt tttaactatt aatgtaatag gctctactct tcctagctga
     4021 ttaacagatt agcaagttta accttcaatc ataatctggt tatcctctat cacgtgttgg
     4081 tctgttactt gtttcatttt gacatcatga atggaatttg gaacttctgg caactttgcc
     4141 tttgcctcat tttcgagtat tccttccacc tcatttaata ttgagagtgc ctctgtatcc
     4201 actggtaatg atatcggaac ttttgtttct ggctttatgt tagaatttat taggacatcg
     4261 gatgtaacgg agctcatttc tgataatact tcactagcag tcggaactgc tttggaaaca
     4321 tctttttgaa tgtctttgat catttcaatt gttggattaa tagtttccaa gatcatagca
     4381 aattcattga tggtactaaa gcgaattacc actacctcta gggcaaggct catgttttgt
     4441 gtagttctct taacatgccg aatatttgct agctcatttg caatagcttt cgcgcggtca
     4501 ttattatctg actttatgtt ggcggcaatt tgattgcgta aatccctgtc cattgcagta
     4561 aacttcttat caagcatcct taatctagtg agctgattat tcaatacaag actagcgttc
     4621 acaatatcac tcttaaactg ctgttgctgc tgatgcttgt ccatctatga atgaaatttt
     4681 tatattatca aatgttaaga ttaatgttaa acttcatgta ccaaaagcta ctataaagct
     4741 aagctacaaa atactagaca tgtctaggat tcatctagcg ggactttgat aaacgggaga
     4801 tgtcttccct taaacaagag ggtataaaca ccgaataaac tttttgtcta gtatatgacg
     4861 aaaaatacac ctcttgatta ggggaaatcc gacgaaaagt taaacacaag acaaatgata
     4921 agtacgtgct agaaggtaat cccataatta gtaagaacct atttcatctc ctagtatcac
     4981 atattttgca agccaatgtc agcatgccga tatggaatac atatagaaga catagaaagc
     5041 agatgattcg cagctccaat acactataca attaaagaaa taaagatgaa atcatatttc
     5101 agtcataaca cctgtttgaa gaacaggatt acatcctcag aacaggaatt attatttaga
     5161 gatataggta caaatgcaca aattgaccaa tacgttataa tattagatga tttcttctgg
     5221 gcaatataac aaaatgccca agtacatgct tcttgtctaa tttctttcaa atgttattat
     5281 tccatctttc tactgaaact gtaaaatctc ccgggttcaa catcgtaccg caggcgatac
     5341 atctgctatg agagagacgc aatgtatctc taatagactt taacgtacgc attgcgaaga
     5401 gagtcgaacc gcattttcta caaactacat ttaccgatga tagtgacata gcaagataag
     5461 aataagatat aataataaaa gcgtcattaa tgatgtttta caaagtgtac aactagtgta
     5521 aagtagatgt taaattagat tttttgcaat attaaaccat ggtttggatt gaaaccaact
     5581 accttaactt tttctccaat agcaagatcc ttggatgatt taactcctgg aagaaatcca
     5641 gacgctctaa agggagcatt gtctactcca aaaacaaccc atgcatatga ttctgtatct
     5701 tcaaatcctt ctggtgccac agcctgaatt gtataagtca ccgttttgcc aattccttca
     5761 tattctactg aatcgaattt gtttccagag catttctcac aataatatat tgtctcgagc
     5821 ataatatgtg cacaccgtaa acatttatta gctagcaact ttcctctatt agcagattga
     5881 ataaattttt ctcgtgagct caagttcttc tgttgatttt gttttgtttc cgacaaatcc
     5941 tactttattc catccttcta aagatatgaa ctgccgagct ggcgccggta gctccaaagt
     6001 tatgtgtaag agcatattct gcatttctaa tttccctatc tccggctttg ccagtaaact
     6061 gctcgaaaac ttctacaacc tgacctatac ctgttgctcc aattggatga ccttttgatt
     6121 ttaatccacc agaagggtta attgggattt caccatttct acgggttgcc ccttccctta
     6181 tagaataggc agcagttcct tttggaaaga aaccaaggtc ttcaatatca attatttctg
     6241 caatagtaaa acagtcatga acttcagcaa aatcgatatc ttttggggca atattagcca
     6301 ttttgtatgc ttgcttggca gcagctacag tgcttgggat cgtagtaatg tcttcgcgcg
     6361 cctgaactgc agctggcgaa gctcctctgc ctgaaccaat aacctccaca taaggcctcg
     6421 cactcttctt ggcatattct tcattacaaa gtatgacagc tgatgctcca tctgaaaacg
     6481 gacaacagtc atagagtttc aaaggagaag caacgactgg cgatttcaaa acatcatcaa
     6541 ctgttatctt tcttcgaacg tgagctttag gattaagaat tccattttca tggttcttta
     6601 cagcaacatg ggcaagatcc tcttcacttg ctttgtacgc agtcatatat actctggcca
     6661 ttgatgcaaa taatcctgga aatgatgcgc catttcctcc ttcataaaag aaatcagaac
     6721 agtaagaaaa taaagttgta ctctgagtag ttcctgtatg tgttattttc tcgacaccta
     6781 ctgccagaac acaatcataa aatccagctg ctatattagc atatgcttct ctaaacatta
     6841 tagaacctga accacatgca gattcaattg taagtccagg cacatgtgga atcccaagat
     6901 tgctcataat aacaggagcc atatgaacct gcctgtcagc aactccaaag acatttgaga
     6961 tatagcctgc ctgaatatcc ttaggtgtaa tcccagcaga atcaatagcg tcttttgatg
     7021 catttaatgc gatttcaata atactttcat ttaacttacc atatttagtg ctacccgcac
     7081 caagaataca gaccttattt gtcatttgat aacaaaaatt gttatttgta ttataaaaag
     7141 gttagacaat ggctttatag aattttcaag aatgttctga agtatatata ataatgagaa
     7201 caatatacta cagctagctt gtaggaataa gaattagata taatcaggat attgaattat
     7261 tatttcttcc atcagaatta ctattaatcg atttaagatg cattaatcac aaataataca
     7321 aaaacatgat taagtca
//
LOCUS       DASQSJ010000306         2400 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_116915, whole genome shotgun sequence.
ACCESSION   DASQSJ010000306 DASQSJ010000000
VERSION     DASQSJ010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116915"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(222..1058)
                     /locus_tag="VE223_06050"
     CDS             complement(222..1058)
                     /locus_tag="VE223_06050"
                     /inference="COORDINATES: protein motif:HMM:TIGR00162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome assembly chaperone family protein"
                     /protein_id="HZC21187.1"
                     /translation="MLSSSRLGINVVYSSSYSSANLPNLQSPYLICGFPGTGYIGKIA
                     VDHLIEELHAKHLADIYSSSFPPQILIRTDGVAELMKNSIYYSDKADAVATTTNTSSS
                     KDMLLLTGDSQPVSPESQYLLAEEILDIAAKFNTQKIFTLGAYITQVFVDQPRVFGTA
                     NDIEIVKAFDGQNILTMDNGSVAGMNGLIVGIAKLSGVKGICLLGETSGYVVDAKASK
                     VVLESLLSITGLRVDMTGIEKKAKDTEMLIETIKQEAAGRALESQQPNMPSKPANTTY
                     IS"
     gene            complement(1696..2328)
                     /locus_tag="VE223_06055"
     CDS             complement(1696..2328)
                     /locus_tag="VE223_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21188.1"
                     /translation="MEITLNVPKICYLLSAILIIMVFILGSPPLLHEATSQGQVKNNS
                     NSNSTSSSSSIKAEPSNKNTAPSNSVSIKLSEGYVNGKIAFFIATDASDNQVAESITK
                     NTGFKVNFAPDLALTPASARQQGYDFVNGIKTNGSPMGFQLGIASALPGEKGYSPLNQ
                     LNLVKWNANAPARILKSAAEVMTAEKNGELSVAKTNIVINSPAVVGMSNK"
BASE COUNT          727 a          449 c          446 g          778 t
ORIGIN      
        1 catgcggttc cctgcaggca tggcaagtgg caagaagtgt tgcaatggcc accacccgtc
       61 tgggcagttc cggcagacat agatgtcgca aatggtgtga cagatttggg gatcataatc
      121 ttgtgacatt tcaagtccaa attataaact attttgcttt tggataaaca ttagagcacc
      181 aagaaatgct tcactagcaa tatttagtat actaaatatg gttaactaat gtatgttgta
      241 ttagctggtt tagaaggcat gttaggttgt tgactttcta atgcccttcc agctgcttcc
      301 tgttttatag tttcgattag catctctgta tcttttgctt tcttctcaat accagtcata
      361 tctaccctta agccagttat tgaaagcaaa ctttccaaaa caaccttcga ggctttggca
      421 tcaacaacat atcctgatgt ttctcccaat aaacaaatac ctttaactcc gctaagcttt
      481 gcaatgccaa caataagacc gttcatacct gcaacactac cattatccat ggttagaata
      541 ttctgtccat caaatgcttt tacaatctct atatcattag ctgtgccgaa aacacgtggc
      601 tgatctacaa agacttgggt gatgtatgct ccaagagtaa agattttttg tgtgttaaat
      661 ttggctgcaa tatccaagat ctcttcagcc aaaagatatt gggattcagg gctgactggc
      721 tgcgagtctc cggtcaataa taacatatcc ttactgcttg aagtattagt agtagtagca
      781 acagcatcag ccttatctga ataataaata ctatttttca taagttctgc tactccatca
      841 gttctaatca aaatctgagg aggaaaggaa ctcgagtaaa tatccgcgag gtgttttgca
      901 tgaagttcct ctattaaatg atcaactgca atcttcccaa tatatccagt gccaggaaac
      961 ccgcagatca aataaggtga ttgtagattt ggtaaattag cagaggaata agaggaggag
     1021 tagacaacat taattcctag tcgtgaagat gataacatac aatataaatt aaataaacta
     1081 gtggacttta aagtgttgtg gctgatggct atcgcactaa tagaaaatgc gatggtagca
     1141 gagcgaatga atttcaagtg atagaacatg tggacagtgt cacaatattc ctgcttttaa
     1201 aatactccaa aaccgctagt agttgttcaa gtttcataga atagcattct ttagccaaag
     1261 acaaggcctg tatcttttct ctcttctgtc atgcttgctg tgaaatactc caagcttcat
     1321 ttgcagtcaa actaacgatg aatttctagt agacttatgg cagccactcg tcaacgtatt
     1381 tttgatgtga tcaaatccat tatgatttgt tatttacgca tttaatagag aatgtctatt
     1441 attaatcata aaaataaaaa gtagaagaat agaaagaaag aaagaaacta tggtggtttc
     1501 acatggtctc aagttgacag accatataga ttttcccttg gataggcaag caattctata
     1561 tggagaggag ccatagcgcc tatctattgt ttccactata aaccgtacat ttcaattagc
     1621 gtccaccatt tacttctact tctaccttca ctgctattgt cttattggat ataatatagt
     1681 aaaggtacgc ttcctttact tattagacat gccaacaaca gcagggctat ttattacaat
     1741 atttgtctta gccacactta attctccatt cttctcagca gtcattactt cggctgctga
     1801 tttcaatatc ctcgcaggag cattagcatt ccattttaca aggtttaact gatttaatgg
     1861 actgtatcct ttttctcctg gcaatgcact ggcaatacct agctgaaatc ccataggaga
     1921 tccatttgtt ttgattccgt taacaaaatc ataaccttgc tggcgagcag aggctggagt
     1981 caatgctaaa tctggggcga aatttacctt aaaaccggtg ttttttgtta tagattcagc
     2041 aacttggtta tctgatgcat cagttgcaat aaagaatgct atctttccat tcacataacc
     2101 ttctgagagc ttgatggata ctgagtttga tggagcagta tttttgttag atggttctgc
     2161 ctttatactg gaagaagagg aagtgctgtt gctgttactg ttgtttttta cttgtccttg
     2221 ggatgtagcc tcatgcagta atggtggtga tcctagaata aataccatta ttataaggat
     2281 tgcagataaa agatagcata ttttgggaac atttaatgtg atttccatac tgtgaataaa
     2341 taccataaat tattataaaa gaggttctat tgcatactgc tcattaatag tttctatgag
//
LOCUS       DASQSJ010000307         3846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_514794, whole genome shotgun sequence.
ACCESSION   DASQSJ010000307 DASQSJ010000000
VERSION     DASQSJ010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514794"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(193..1296)
                     /locus_tag="VE223_06060"
     CDS             complement(193..1296)
                     /locus_tag="VE223_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HZC21189.1"
                     /translation="MNLLLGKEREIGIITIISIIIFSNGLLFYLQNITEADLRKSVFE
                     QQRQLQIQSTKEIAQHVSSDITLIISMLYALANSYYVQQGQLGNDKTTKLLDDTYHTY
                     NLTIDRLFILDKNDILVSNARTQSSEFFLGEDFSFRDWVKETRSTLTSVFSGDFEREG
                     IYREFISYPILNSNQYIGTIVTSIPTVPFFAHYGDVNHVSSKFLVAYDSKGIILANGV
                     NNTLIGKEFFGQDSQKFINHNKILNNLTRTLLAGKPGSAVYDYGTGQRLTTQYPIFVK
                     GKPIFFVQIVTPTSEIYSKINNVLAIQRMSLFSIFIATSTAAIVVLILLLRKWNIILR
                     KEVKRRTQELEESYEQMKQYLEDVLKEVRRGKA"
     gene            complement(1526..1729)
                     /locus_tag="VE223_06065"
     CDS             complement(1526..1729)
                     /locus_tag="VE223_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21190.1"
                     /translation="MADIPIPWKKTTRGLPNGRRYADDRISTIEEIRKIIEYPNRRIK
                     AIVYTMTSSGMGLGAWDYLKWAI"
     gene            complement(2246..3595)
                     /locus_tag="VE223_06070"
     CDS             complement(2246..3595)
                     /locus_tag="VE223_06070"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HZC21191.1"
                     /translation="MTDSSLKSSVIGVLILILLGIIASSFYAAAAAHSLSAAIQSSRS
                     KKQVTLTAILVEPRPRWDMLLKNAMHKLQGRHPDMDIKIKYTVLPYDISRRSILNYLG
                     NRSSVDLVSVDQIWLGDFAERGYLTDLTDRAQSWGRLSDWYQSNLDGTIYKGKIYGIW
                     AWTDVRGIWYWKDLLNKAGVDPNLLKTWAGYIESAKKLNESLKTQNIQGIGLDCGASL
                     WYPYLWMLGGEIIKMKGGHPTKGTYWFPAFNSSAGVKAMQFLKDQVRAGLKPISNGNF
                     DTRSFVNRTYAVFLGGSWVPEEFHSNQTIDITQKVGFLPMFPVPKEGVQTTTVMGGWE
                     LSIPQSSKNKDLAWELTTLMLEPDVLAPMLEKTGYLPTQTSIGQGPFLTTLNHTIPYF
                     DKMLSMVQSGRGRPNIPEFAQMDDYVTEAGKQVCTSTKDPKQALEDAAKKSAKLLGW"
BASE COUNT         1107 a          751 c          655 g         1333 t
ORIGIN      
        1 tcaaaaaact ttttatctgt aataatagga ttataataat ataatacata ttatttcgca
       61 cttgatttag tagcaatttt ttaactgaat agtatcttct tgcggcctct tcagaagcag
      121 ctgttggagt tcttttgatc catttgtcat accacggctt acactggata aagccaatct
      181 gattcgaata ctttatgctt ttcctctcct tacctctttt aaaacatcct ccaaatattg
      241 tttcatttgc tcatatgatt cttctaattc ttgagttctc ctctttactt cttttctgag
      301 aataatattc cattttctga gtagcagtat taaaacaaca atagcagcag tacttgtagc
      361 tataaatatt gaaaacaagc tcattctttg tatagcaagt acattattga ttttagaata
      421 aatctctgaa gtaggcgtca ctatttgaac aaagaatata ggcttacctt tcacaaaaat
      481 tggatattga gtggttagtc tttgacctgt tccataatcg tagactgcag agccaggttt
      541 gcctgctaaa agggttctgg ttaagttgtt caaaatttta ttgtgattta taaatttctg
      601 actatcctgc ccaaagaatt cttttcctat taatgtgttg tttacaccat tagccaatat
      661 aatacctttg ctatcatatg ctaccaagaa ctttgagcta acatgattaa catctccata
      721 atgtgcaaaa aatggtactg tagggattga tgttactatc gttccaatat attggttaga
      781 attcagtatc ggataggaaa tgaattctct gtatattcct tctctctcaa agtcgccaga
      841 aaatactgat gttagagtgc tccttgtttc ttttacccaa tctctaaatg aaaaatcttc
      901 acccagaaaa aattctgatg actgcgttct tgcgttagat accaaaatgt cgttcttatc
      961 caaaataaat agtctgtcta tcgtaagatt ataagtatga tatgtgtcat ctaacaactt
     1021 tgtggtttta tcattaccta attgtccctg ttgtacataa taggaatttg ccaaagcata
     1081 aagcattgag ataattaagg ttatatcgga gcttacatgt tgggcgatct cttttgtaga
     1141 ctgtatctga agctgccttt gttgttcaaa gacactcttt ctaagatcag cttctgttat
     1201 attttgaagg tagaataata gcccatttga aaaaataata attgaaataa tggtaatgat
     1261 gcctatctct ctttctttgc ctaaaagtaa attcatactc ctataatagg atcaattgga
     1321 agactctgtc tattaaggta ctaacaccta aggcgagact tttccataaa tgacaatgta
     1381 taatgtggaa gcatcatgga tgttatcgta attccatgaa aaaatctgat aaggtaacag
     1441 agagataaat gtaaagtact ttcgtcttct ccagtgtata caatcacctt tgtagcaacg
     1501 atcttaccat ttccttgaac tggctttata ttgcccattt caaataatcc catgctccca
     1561 gtcccattcc tgaagaggtc attgtgtaaa caatagcttt tattcttctg ttagggtatt
     1621 ctattatttt tcttatctct tctatggttg aaattctgtc gtctgcatat cttcttccgt
     1681 ttggaagacc acgagttgtt ttcttccaag gaattggtat gtctgccatt tcgcagaata
     1741 gtttaatgcc ttttatgtaa tttctgactc tggcaccagt tatctccttt ctatttacac
     1801 ggtctctatg aaattgaatg aactttacat tgctgttaaa cgcccaattg ggtcattttt
     1861 tctccctctc agcgaatatc aatgctcttt gttctatgtc tttattatca ccacgaccat
     1921 catcactgct agcagcaaca tcatcacatt gatccaatga aataaagtca aggaatttgg
     1981 ccagtctttc ttggtatttt tgtcgcgtta tgagtgatct tgtatgaaag gtaatgaaag
     2041 gatgatgaga tgatgatatg gatgtttatt ttcttaaaat acacaaacat ctgtacgaaa
     2101 tccccgacaa tctataagac atattcatat agtactcaag tttcttcata aagcagaatt
     2161 catgccgaga gcaagatatg ggccttgatt ctatgccatt attttttggc tatactgcat
     2221 accagttctc ttcatgctac cttctttacc atcctaaaag ctttgcagac tttttagcag
     2281 catcctctaa tgcttgctta ggatccttag tgctggtaca aacttgcttg ccggcttcgg
     2341 taacgtaatc atccatctgt gcaaattctg gtatattggg tctgccacgt cctgactgga
     2401 ccatggaaag cattttatcg aaatatggaa ttgtatgatt tagagtagtc aaaaaaggac
     2461 cttgacctat actcgtctgt gttggtaagt atcctgtttt ttccaacata ggcgcaagca
     2521 catctggctc tagcatcaat gtagttaatt cccaagcaag gtctttgttt tttgaacttt
     2581 gaggtatgct cagttcccat cctcccatca ctgttgtagt ttgaacacct tcttttggta
     2641 ctggaaacat gggtagaaag cccacttttt gagtaatgtc tattgtctga tttgaatgga
     2701 actcctcagg cacccacgat cctccgagaa agacagcata tgttctatta acaaaggatc
     2761 tagtgtcaaa gttaccattt gatatcggct tcaagcctgc tctgacttga tctttaagaa
     2821 attgcatagc tttaacaccc gctgagctat taaaagcagg aaaccagtac gttccttttg
     2881 ttggatgtcc acctttcatt ttaattatct ctcctccaag catccacaga taaggatacc
     2941 agagtgaagc accgcaatct agaccgattc cttgtatatt ctgagttttc agcgattcat
     3001 taagcttttt tgcggattct atatatccag cccatgtttt taataaattt ggatcaactc
     3061 ctgccttatt caataaatct ttccaatacc atattcccct cacatcagtc caagcccaga
     3121 taccataaat cttacctttg tatatggttc catcaaggtt agattgatac caatcagaaa
     3181 gcctacccca gctttgtgcc cggtcagtaa gatcagtaag gtatcctcgt tcagcaaaat
     3241 ctccaagcca tatctgatcc acagagacta gatcaacaga acttcgatta cctaaataat
     3301 tcagtatgct tcttctactg atgtcatatg gcaacactgt gtactttatc tttatatcca
     3361 tgtccggatg tcttccttgt aacttgtgca ttgcgttttt aagtagcata tcccatcttg
     3421 gtcttggttc aactaagatt gcagtaagcg taacttgttt tttagaccga gatgattgta
     3481 tagctgctga taatgagtgg gctgcagctg cagcataaaa agaagacgct ataataccta
     3541 gcagtataag tataagtacg cctatgactg aggattttag gctgctatct gtcacttaat
     3601 atcgcatata gtgacgtttg atttaacgat ttctcctacc aggtaacagc ggaataacca
     3661 gacaacataa aatagaggtt tagtttgttg agtataacaa tggttgcttt ggattatcta
     3721 aaggccatat tgtagattgt gaaccgggtg cgtttataga acctgatctt ggtgctggta
     3781 ttttaactgg ataactaatc tgtcgagagg tgtcttaaat tatttaaaga agacgcacca
     3841 aaggcc
//
LOCUS       DASQSJ010000308         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_355850, whole genome shotgun sequence.
ACCESSION   DASQSJ010000308 DASQSJ010000000
VERSION     DASQSJ010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355850"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(833..1555)
                     /locus_tag="VE223_06075"
     CDS             complement(833..1555)
                     /locus_tag="VE223_06075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21192.1"
                     /translation="MTTLLLVIIIIITIFMPAVPLLSSFFIRTARAEELDTVLTTTTT
                     TNTNTTLSKAPIPFPPQAKMRADIARMFAASANAVVVPSGSQKCLVNLDRFILPLKEH
                     RFIVIRHCVTVTGRVIWTHYFNDDGDANFNVQLDPPFAAMLAQGNYNPSYLSKAYTKE
                     QKAGIAPGIAGIHVEAVCQGPVTSNLTENVGACNGYDGPYFVLPKLGEHVSITGRYLI
                     EYPEVQGGLAELHPAYDVHLVH"
     gene            complement(1887..2021)
                     /locus_tag="VE223_06080"
     CDS             complement(1887..2021)
                     /locus_tag="VE223_06080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21193.1"
                     /translation="MSYYYTSKATGTFTLTKNAVKDLYRFTILLPDGVSAAVLICIMS
                     "
     gene            complement(2076..>2294)
                     /locus_tag="VE223_06085"
     CDS             complement(2076..>2294)
                     /locus_tag="VE223_06085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21194.1"
                     /translation="PNIDFDSKNQSTTTNQEQRFPLTGTIDQVGSDIQRIKKMEIDHI
                     VFGYNFIPIGRDLDKMLDVAKQLANIAR"
BASE COUNT          689 a          441 c          425 g          739 t
ORIGIN      
        1 actgctcgca ttgggacttt gcccgcatcc catacgccat attccgctta aagctttgta
       61 tgaatgtctt cccaagtaaa caaggatggc tactcgaact tgatgccaat gacaaatatg
      121 atagtagctg ttacaataca catatgactg cttctttaat catcatttct catacacagc
      181 catgccatca actctaagaa gagatctacg ctaaatcggc actgtacaca aatagatcct
      241 tatattgtgt tgcttccaat acaccgactc cgatgaacag gatatgattt gtaatgcttc
      301 gaagaaatac aagccgtcaa gttatttggc agaccaaaga tccccaatat aatagggtta
      361 ttaccagtgg caattaagcc tgatttgaca tatgaaaaaa ccatagcttg gaggcagtct
      421 agaaatgcag gaagaaatac atgcgtttta gaacaagcaa tgaccattaa gtgattagag
      481 catggataaa aactaaggat tgcaattgta tgttgttgtt actgctgcta tctgtggtac
      541 tattgaatta gagtgagttg tgcttgatag aaatatgata caaagaagag atatgcttct
      601 ctgtattctt aaatttagtc tttttctact acttttacta actcatcgtt atgaagtgac
      661 aatataaggt attgctttga cattttccaa taactcatgg aactcttcac gagatgttct
      721 attgattctg ttgtttttcc cttttgaagt agcctttcca ctttgatcga gattcagtga
      781 caaggtgtaa gttgctacaa gattgagaag aaaaaggtca gaataaaaat atttaatgca
      841 ccaggtgaac atcatatgca ggatgtagct cagctagtcc tccctgtact tcaggatatt
      901 ctattagata tcttcccgtt atgctaacat gctctcctag ctttggcaat acgaagtagg
      961 gcccatcata tccattacaa gcgccaacat tttccgttaa attggaggta acaggtcctt
     1021 ggcatactgc ctctacatga atcccagcta ttccaggagc aatacctgct ttttgttctt
     1081 tcgtataagc ttttgataag taagatggat tgtagtttcc ttgcgccagc atcgctgcaa
     1141 atgggggatc aagttgaacg ttaaagtttg catccccatc atcattaaag taatgagtcc
     1201 atatcactct tcctgttact gtaacgcagt gtcttattac aatgaaccta tgctctttta
     1261 gcggcagaat gaatctatca aggttcacaa ggcatttttg agaaccagat ggaacaacta
     1321 ccgcattggc agatgctgca aacatccttg caatatcagc tctcatcttt gcttggggtg
     1381 gaaagggaat aggggctttt gatagtgttg tatttgtatt cgttgttgtg gtcgttgtca
     1441 atacagtatc gagctcctca gctcgggctg ttctaatgaa gaatgaagat aacagtggta
     1501 ctgctggcat aaatattgta ataataataa taataactag caggagcgtt gtcacatttc
     1561 tttgcatatt tcttctagtc aggaagtatc aataaaatat aagtctttta ggataagtga
     1621 tgacacacaa tatatgtgct acccaaccat gtttctacat cccttccaga tagataatcg
     1681 gcgggaagat gttcttgaat tacatgaaca aatattccac ttcgtcaata tcataaaata
     1741 ttaaagtcta caacgcaagc ccatggttcg gcgagccaat ctgatatagg aatttctcat
     1801 ttcgaacgtc atattgaaaa ttcaacatcg ccaccgtctg caaaaaagcg atccatttac
     1861 tgcttgtaag gaaggatctt acatcgttat gacattatac aaattaggac tgcagcagat
     1921 actccatctg gtagtaagat cgtaaacctg taaagatcct ttacagcgtt ttttgtcagt
     1981 gtaaaagtac cggtggcttt actggtatag tagtacgaca tatattataa atgacctcaa
     2041 attttctcct aaacatccat acagttcaac atttattatc tagcaatatt ggcaagctgt
     2101 tttgctacat ctagcatctt gtcaaggtct ctacctattg ggatgaagtt atacccaaat
     2161 acaatatgat ctatttccat cttttttatt ctctgtatat cactgcctac ttgatcgatt
     2221 gttccggtta acggaaatct ttgctcttga tttgttgttg ttgattgatt ttttgaatca
     2281 aaatctatgt tagg
//
LOCUS       DASQSJ010000309         2273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_195370, whole genome shotgun sequence.
ACCESSION   DASQSJ010000309 DASQSJ010000000
VERSION     DASQSJ010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195370"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..255
                     /locus_tag="VE223_06090"
     CDS             82..255
                     /locus_tag="VE223_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21195.1"
                     /translation="MAQTQIKQEYVHPEVLVDTQWIEDHLKDDKVRIAEVDYDPTSNY
                     KLGHIPGAVSTLK"
     gene            467..1003
                     /locus_tag="VE223_06095"
     CDS             467..1003
                     /locus_tag="VE223_06095"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HZC21196.1"
                     /translation="MQSTKTKIESHPVPTQLATKTDLSQQETKAITDAVNPLIADAFA
                     LYVKTKNFHWHLYGSHFRDYHELFDEHAEAILESIDIMAERVRRVGGTTIRSISHIGQ
                     LQTIQDDNSSLVPPGEMIRILMEDNYHIAKMIRDAIDVCDENRDSPTSNLLQDILDKT
                     ERRKWFLYEIMQGSKNTE"
     gene            1625..2041
                     /locus_tag="VE223_06100"
     CDS             1625..2041
                     /locus_tag="VE223_06100"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC21197.1"
                     /translation="MHKGHINAKNHNSNTSILAVDDEYDIVNLIKQSLERGGQYRVCA
                     FIDVLEALNHFKLDSKDHHDIIISDIRMPGMNGYEFLKHAKNIDSQVKVILMSAFEIQ
                     EKEFHNMLPDTMVDGFLQKPFSIGQLNDMVEKISQS"
BASE COUNT          788 a          395 c          425 g          665 t
ORIGIN      
        1 gaaaattgca tataatttta ctaccttgca tatttcacat caataatatc ttctaattat
       61 tattaacatg cagatacaaa tatggcacaa acacaaatca aacaagaata tgtacatcct
      121 gaagttctag tagatacaca atggatagaa gatcatctca aagatgacaa ggttcgtatt
      181 gcagaggtag attatgaccc aacttcaaat tataaattag gacacatacc aggagcggtt
      241 tcaacattaa agtaaggatt caatttttga ttttgatgac tggagaaatg cagaggtctt
      301 cgatatgata actagcacat gatgacatga taatggttgc tctttttgta ttagatttac
      361 ttaatgtatt aatcatatca gaaaaatgtc tgtcaaatgt ttatctagat agtagaaagt
      421 gtattaagca acaaagacca gtgaggtttt gaaggagtac aaagaaatgc aatcaacaaa
      481 aaccaaaata gaatcacatc ccgtaccgac tcagcttgcc acaaagaccg atctttctca
      541 acaggagact aaagctataa ctgatgcagt caatccactt attgcagatg cttttgcgct
      601 ttatgtcaag acaaaaaact tccactggca tctctatggt tcacatttca gagactatca
      661 cgaattgttc gatgagcacg cagaggcaat actggagtca atcgacataa tggcagaacg
      721 tgtgcgaaga gtaggtggta caacaatacg aagtataagt catataggtc agctccaaac
      781 catacaagac gacaacagca gtttggtacc tcctggagaa atgattcgga tcttgatgga
      841 agacaactac cacatagcta agatgatacg tgatgcaatt gatgtatgcg atgaaaaccg
      901 agattctcct actagcaacc tgctccagga cattctagac aagaccgagc gccgcaaatg
      961 gttcctttac gagataatgc aagggtcaaa gaatactgaa taattcaatt ggtgtatgtc
     1021 tttactatcg aggcagccac cattttttcc tttgcacaac tcttggaatc ttgcgaactc
     1081 caatagaaaa tactgtctta aaatatctta atggcagatc catgttacca tgttaattgc
     1141 tttgcgccca gccaattgca aggtcacctt aataatgatg ggaagataat ctgaaattga
     1201 ttcccaagat tgtatcttaa ctctcgttgc tgttgtgaaa actagctttt gcaggtctga
     1261 ataccatttt taatttaatc aggagtcagc ttcatctttt gtcattcatc gttaggctaa
     1321 tgtgtatcaa attcaatctt ccaacgggat aatcaaagga agatatacag agagaaaata
     1381 gataggtaca atcaatcgtc taagcaacag ggttcctcta gttcgccgcc atatgggaca
     1441 atttccatgg tagtctgtca ttccaacttt aggaattctg tgctagaaat gatcgataca
     1501 tatatcatat ataacgactt ttggacaatt atcagcattt cagatgatcc ttgcattgtg
     1561 aagaaactgc atagataaaa tgcttaaata caaatactgg tacgtagttt aagttgggct
     1621 tgatttgcac aaaggtcata tcaacgctaa aaatcataat agtaatacct caattttagc
     1681 agttgatgat gaatacgata ttgtcaattt aatcaagcag tctttagaga gaggcggaca
     1741 gtacagagta tgtgccttta ttgatgtact agaagcgcta aatcacttca aattagactc
     1801 aaaagatcac catgatataa tcatctcaga tatcaggatg ccaggtatga atggctatga
     1861 atttctaaaa catgctaaga acattgattc acaagtaaaa gtgatactta tgagtgcttt
     1921 tgagattcaa gaaaaggaat ttcataatat gctgccagat accatggtag atggctttct
     1981 ccaaaagcca ttttccatag gacagctaaa tgatatggtg gagaaaatta gccaatccta
     2041 ggatcaattc ctttaatatg atgatagtga ttatgggata aaactgtaat agttattata
     2101 ttgtttgtgc aatgttaggg ggtttacccg tagtggcaca aaacttaaca aactgtcagg
     2161 ttaatgatgt actgcaacat atgagtgaag cagaatatgg tgctcactac ataataatat
     2221 atccaagttt acatagatta agggagcttt attctaacta tgtattgaag aaa
//
LOCUS       DASQSJ010000310         2042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_515059, whole genome shotgun sequence.
ACCESSION   DASQSJ010000310 DASQSJ010000000
VERSION     DASQSJ010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515059"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(345..794)
                     /locus_tag="VE223_06105"
     CDS             complement(345..794)
                     /locus_tag="VE223_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21198.1"
                     /translation="MLKKSSKISQIYLAAAISILSVLVVGAVPVGIMMVAHASNDPRN
                     QACYNAGYADGRKNNSPFSQSAFNQCGPNGRAYYEGFISGCISGHGNDFFSCQRLTGL
                     PINGVGGGSGSGSGSGDNTNGGSGGGSGFGGGGGHSGHGGGGGGGGQ"
     gene            897..1079
                     /locus_tag="VE223_06110"
     CDS             897..1079
                     /locus_tag="VE223_06110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21199.1"
                     /translation="MPNWRGLAQWLTGLPFGYFYRRIKAIVIDRISSLGNLFIIINFV
                     DKHHRCFSRSIAVETI"
     gene            1562..1795
                     /locus_tag="VE223_06115"
     CDS             1562..1795
                     /locus_tag="VE223_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21200.1"
                     /translation="MIVALDSAGNVKTSPPNASLTMTGNEQYVNSGWLIPKAGQKDFP
                     GSSNTFTVVFQKTGTYNYLCTLHPWMLGRVVVK"
BASE COUNT          596 a          412 c          364 g          670 t
ORIGIN      
        1 taaagcgata aatgagatta taatgactaa tgagtttatg tcataaaatc tggaggggta
       61 ctctggtttg tattatggtg ccactgatgg acgttactac cgctgctatg taagtatgat
      121 ttgtcgtctt cttgcttact ccaaaatcga cagaaatata gattatgggt caccttatac
      181 tccaccgtgt aaatcaggac ccggattgca tagtttggat ggaaatcttc cctaatacta
      241 gaatgccggt aacgtcttaa ctttgtagct tcagtataca tccatttggt gattgtgtca
      301 ctgagaagta accttcccat ttgtatagat aatatttgag ggcgctattg ccctcctccg
      361 cctccgccgc caccgtggcc gctgtgacct ccgccaccgc caaagccact gcctcctccg
      421 ctgccaccat tggtattatc tccactacca cttccgctcc cactaccgcc gcccacaccg
      481 tttataggca aaccagtcaa tcgttgacat gaaaagaagt cattcccatg tcctgatata
      541 caacccgata tgaatccttc ataataagct ctaccattag gcccacactg attgaatgcg
      601 ctttgactga atggactgtt atttttccgt ccatcggcat aacctgcatt ataacaagct
      661 tgatttcttg ggtcattgct agcatgtgca accatcatta tgcctactgg tacagcacct
      721 actacaagta cactcaaaat agatattgct gctgctaaat atatttgtga tattttactt
      781 gattttttta gcatgtgaac tatcaaccta atctttgctt aaatatttta tattgcataa
      841 atctgattaa tattatatat cattttgtgg ttgtcacgat ccttctggaa agatgaatgc
      901 ctaactggag gggacttgct caatggctaa ctggtctacc atttggatac ttttatcgaa
      961 ggattaaagc aatagtaata gataggattt catctttggg aaatttgttt atcataatta
     1021 actttgtaga taaacaccat aggtgcttct ctaggagtat tgctgttgaa actatctgat
     1081 gaatatacaa gactaagtgg ttggttgctt gctgcattgt ttggatactt tatatgtttt
     1141 gaataaattg ctatgcttcc aggagaatac tcttgttgaa tagatacatc ccgactacta
     1201 ttatctctta atccatatgc tacaatggta aaaggaatta actgtccgag aagcgttctg
     1261 ttccagaata tttgagtagg agttatatca tccttttcta gataattgct ttcattaaac
     1321 cctgctattc ttatgaacca atgcttctta ctttcatccc ctccactacc taaggtatag
     1381 aaggaagtgc cattagttcc agcaaagcgc tgtgctacta ggttttacaa accttatggt
     1441 gctatcgcat agtcaccaga ggcatcaaaa atcttccaat ctatgtcctc gattatcttg
     1501 gaactattat cgcttgttgc tggtcccata ggttggacaa tatccttaca ctcatatatc
     1561 tttgatagtc gcattagatt cagcagggaa tgtaaaaact tctcctccaa atgcaagcct
     1621 tacaatgacc gggaacgagc agtatgttaa ttcgggctgg cttattccaa aagcaggaca
     1681 aaaagatttt cctggttctt ccaatacatt tacagtagta ttccaaaaga ctggcacata
     1741 taactatctc tgtacattgc atccttggat gttgggaaga gttgtagtga agtaaagaaa
     1801 ctggaaagcg cgcacgcgcg tgtcatctta ttattctttt tataatctct ttttgcaaaa
     1861 tttagtcgag gatggtttag taataattca tgggtcgttg tacttgttaa atagtaataa
     1921 taatctcctt ttacttataa aaaagaaatt atagttcata tataaacaat gaggaagtaa
     1981 tactagcaaa cgaacataat acaattatat gatattatat gtaatgactt tactcaaaaa
     2041 ta
//
LOCUS       DASQSJ010000311         2750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_155809, whole genome shotgun sequence.
ACCESSION   DASQSJ010000311 DASQSJ010000000
VERSION     DASQSJ010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155809"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(340..486)
                     /locus_tag="VE223_06120"
     CDS             complement(340..486)
                     /locus_tag="VE223_06120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21201.1"
                     /translation="MAGLFGGLVGGDPIASLVNYYAPPYERFKLFIIPEFVGFACLGL
                     MVWT"
     gene            809..1717
                     /locus_tag="VE223_06125"
     CDS             809..1717
                     /locus_tag="VE223_06125"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZC21202.1"
                     /translation="MNKQISNQKLVNTNVLHRTITIDGLSVFYREAGDPSNPKMVLLH
                     GFPSSSHQYRNLIPVLANHFHVVAPDYPGFGNSDMPSPNDFNYTFDRLSQIVEDFLSA
                     IGFTRFGLYMQDYGGPVGFRITSRHPEWLEWLIIQNTNAYEVGFTSAWDGLRNALWKN
                     RTPETEEPLYGFLQLDTIKQVYLHGHKAPDVISPDNWNMDFRFIERPNARRVQMDLFY
                     DYRTNVALYPKWQKFLQEHRPKTLIFWGQNDIFFTREGGESYLNDLPDAEMHRFDSGH
                     FVVEDCLDEIAMNIQRFYLERVKKTT"
     gene            1970..2686
                     /locus_tag="VE223_06130"
     CDS             1970..2686
                     /locus_tag="VE223_06130"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HZC21203.1"
                     /translation="MGRKDWYYVHFPKLLIKRLDQFLQTPRAKSMGMSNKPELLRHII
                     NQFLDEEEAFYNKMNYVSDLILEMKDRDHVVFTFNNESQFKEIVNASIKRGIDHNQIN
                     VLLIHTKEKQKFIESIDKVQNVNSLFNSKDIIIIPADESFYEDGSFSAVPTIKSIGNI
                     VELAKQKSKNGLNILATLPTKLIEQGRYDDALKLEDMCNKGIKEFEIPVTIQCIYKAI
                     PENLEDRFSEYHDLIIKREK"
BASE COUNT          934 a          523 c          491 g          802 t
ORIGIN      
        1 tcccctcttt cataaaacga tttcaactca tcttctatat gcattgtttg aaagcaaaga
       61 ttcatctgaa atactagcaa aggatatgaa aatgctcttt tacttgtcac ccaagcaata
      121 gatacaatca tgacaggcga aggacttgac gataaagatc ttgtcatctc caaacccctt
      181 agacaggata tacaaaggta caggagttta tttcctcatg tatctgcagc tattcaatca
      241 aaaaatatcc actgaaaggc gatacgattc aatatatcta ttcaccctca aagcataaca
      301 atcctctttg cagggtgaca tctattgaga acatataatc tatgtccaaa ccattaaacc
      361 gagacaggcg aacccaacga attctggaat tataaacagc ttaaatctct cgtatggtgg
      421 agcataataa ttcactaggc tggcaatagg atcaccaccg actaatcctc cgaacaaccc
      481 tgccattatt gcaatactta ctattcgctc atttttttcc atggattgct ataacaaaag
      541 agcccatttg acagaagtat acttttgctt tttgtttatg ttgaactatg cattcgaatt
      601 ttggtcgtta aatcaaagtc tggacataaa atctgcactt atgtatctag actttaaatt
      661 accttgttgt aatcatatgc ttcacacact gctccgtata ttgcgatctt cattcttcta
      721 atcccaatta cgttgatagc tgggcttaca gtaaggcaag ggtaaacccc aattgttaaa
      781 taaaaaatag acagtttttg tgtttgatat gaataaacaa atttcaaacc aaaaactggt
      841 taacacaaac gtacttcaca ggactataac aatcgatggg ctatcggttt tctacaggga
      901 agcaggtgat ccttcaaatc ccaagatggt attgcttcat ggctttcctt cttcctccca
      961 tcaataccgc aaccttatac ctgtactagc caatcatttc cacgttgtag cgccagacta
     1021 tcctggtttt gggaactccg atatgccaag tccgaatgac ttcaactata ccttcgatcg
     1081 gctctctcag atcgttgaag atttcttgag tgcaatcgga tttactcgct ttggccttta
     1141 tatgcaagac tatggtgggc ctgtaggctt tcgaatcaca agtcgacatc ctgaatggct
     1201 tgaatggcta ataattcaaa atacaaacgc ttatgaggtt ggctttacga gtgcgtggga
     1261 tggtctacgt aacgcgcttt ggaagaatcg aactcctgaa actgaggagc cgctatacgg
     1321 atttctccaa cttgatacga taaagcaagt ctacctgcat ggtcataagg ctcctgacgt
     1381 catcagtccc gacaattgga atatggactt taggttcata gaaagaccaa atgcaagacg
     1441 tgtgcagatg gatttgttct atgattaccg cactaacgtt gcattatatc cgaaatggca
     1501 aaagttcttg caggagcatc gaccaaagac attgattttc tggggacaaa atgacatatt
     1561 ctttactcga gagggtggag aatcatatct caatgaccta ccagatgcag agatgcatag
     1621 gtttgattca ggacactttg ttgtagaaga ttgccttgat gagatcgcta tgaacattca
     1681 aagattttat ctagagaggg tgaaaaaaac tacataagaa caaagcaaaa acaacatgaa
     1741 tggaggtatt catcaactta gaattagaat gacaatataa tagcatgcca catagtacaa
     1801 aggtctgcga tcgtttattt ttatgtggta acacgatttt catttaagca atagacggta
     1861 tgaaaaaatt gttcaaatct attatttaac agcattgttg tatgtttagc ctgtcaataa
     1921 taccatgata acaataacaa tattataata atctggagaa agcgctctta tgggacgcaa
     1981 ggattggtat tatgtccact ttccaaagct tctgataaaa agattagatc aattcctgca
     2041 aacacctagg gccaaaagta tgggtatgtc aaataaaccc gaactattaa gacatataat
     2101 aaaccaattt ctagatgagg aagaagcatt ttataataag atgaattatg taagcgacct
     2161 tatcttagag atgaaggatc gtgatcatgt tgttttcact tttaataacg aatcccaatt
     2221 taaggaaatt gttaatgcat ctataaaacg aggcattgat cacaatcaga ttaatgtctt
     2281 gcttattcat acaaaagaaa aacaaaagtt catagaatca attgataaag tgcaaaatgt
     2341 gaattcccta ttcaactcaa aagatataat aataatccca gccgacgaga gcttttatga
     2401 ggatggcagc ttttctgctg tacctactat taaaagtata ggcaatattg tggaactagc
     2461 aaaacagaaa tcaaaaaatg ggttaaatat tctagcaact ttaccaacga aattaatcga
     2521 acaaggaaga tacgatgatg ctctcaaact tgaggacatg tgcaacaaag gaataaaaga
     2581 atttgaaata cctgtaacta tacagtgtat atataaggcc ataccagaaa accttgaaga
     2641 tcgtttttca gaataccacg atctcataat caagcgagaa aagtgatgta tatcgcactg
     2701 caaaaggaaa tgaacaaaat tttgttagct gtttgatttt gccttacctc
//
LOCUS       DASQSJ010000312         2206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_515217, whole genome shotgun sequence.
ACCESSION   DASQSJ010000312 DASQSJ010000000
VERSION     DASQSJ010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515217"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1344
                     /locus_tag="VE223_06135"
     CDS             190..1344
                     /locus_tag="VE223_06135"
                     /inference="COORDINATES: protein motif:HMM:NF040322.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21204.1"
                     /translation="MNDIKIAFWNLANLFDIGSSETALAHEFTPDRGWTKEVLDKKVE
                     NLAQVIRLINYGHGPDLLGICEVENQHITQKLLGEVGRDDYRIAQYNDGPDIRGIDTS
                     LIYSTKVFRFISANSYNVYLRYPTRDIFHVRLQVIENGAELDVIVNHWPARVRGGQCE
                     TEPLRITAAECCGRVVDNILKYSVVELKSMQDNLQSDESIAKLNERWNKNVLVMGDFN
                     DQPFDKSIMNHLHATPDIEAMQEWKYIFEFLNKDYYARERQNDKQNYLQHAAYLYNCM
                     WSLIPDGTNYNDRSMNSMNMLDQFIISRGLYYGKQKLIMDLNEVKIFKENVDSHHGYP
                     ITIREPDGRPMSFEWTRKDKNMRPIEIRKGREPNTGYSDHFPIQGIIKII"
     gene            1403..1627
                     /locus_tag="VE223_06140"
     CDS             1403..1627
                     /locus_tag="VE223_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21205.1"
                     /translation="MTDSSDNSRRFDGSSFHQESVQVVKEYEAVITSMTRQGDRFTRV
                     QGFVKNVKAGQKVKVKEKVGNRHTTATMAF"
     gene            complement(1718..>2206)
                     /gene="tfb"
                     /locus_tag="VE223_06145"
     CDS             complement(1718..>2206)
                     /gene="tfb"
                     /locus_tag="VE223_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018540.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HZC21206.1"
                     /translation="KTAYIYRKAQARGLVRGKLITAFVTAAIYASCREMEIPWTLKDL
                     TAASNLKRKDIARNYRMIISELCIKIPNADPMKCIAKVANKANLTENTKRQAISIMKE
                     AIEKQISAGKDPMGLAATVLYLSCLKTGEDTTQFQMAHAAGVTDVTVRNLLRELKIKL
                     KL"
BASE COUNT          741 a          343 c          447 g          675 t
ORIGIN      
        1 catatgtaac atatgtacac cattcaaaga tggcaaaaaa agcttaagga agaaggaaaa
       61 aaattgtgga tgaggaaata tgcccgttcc ttgtactcat ggcatgattg tgtttagcgt
      121 acagcaatct ataagtaaat agagaaaaac tattatcatc tatataatac ctgttttcca
      181 gtagaaaatg tgaacgatat caagattgcc ttttggaatt tagcgaattt gtttgatatt
      241 ggttcatcag agacggcatt agctcatgaa tttaccccag atcgaggatg gacaaaggaa
      301 gttcttgata aaaaagttga aaatttggct caggtgataa ggctaataaa ttatggacat
      361 ggtccggatt tattaggaat ttgtgaagtt gaaaatcaac atatcactca aaaattacta
      421 ggggaagtag gacgtgacga ctatcgaatt gctcagtaca atgatgggcc agacataaga
      481 ggtattgaca catcgctaat ttactctaca aaggtcttca gattcatcag tgcgaatagt
      541 tataatgtct atctaagata tcctacacgt gatatatttc atgtacgcct tcaagtaata
      601 gaaaatggtg cagaacttga tgtcattgtg aaccattggc cagcaagggt aagaggaggt
      661 caatgtgaga ctgaaccgct gaggataact gctgcagaat gctgtggcag agttgtcgat
      721 aatattctaa agtattcggt tgtcgagctc aaatctatgc aggataacct tcaatctgat
      781 gaatctattg caaagcttaa tgaacgatgg aataaaaatg tgcttgtcat gggagatttc
      841 aacgatcaac catttgataa gagtataatg aatcacctac atgcaactcc cgacatcgaa
      901 gctatgcagg aatggaaata tatctttgaa tttttaaata aggattatta cgccagagag
      961 aggcagaatg ataaacaaaa ttatctacaa catgctgcat atctttacaa ctgtatgtgg
     1021 agccttattc cagacggtac taattacaat gatagatcca tgaattctat gaatatgtta
     1081 gatcaattta ttatttcaag aggattgtac tatggcaaac agaagttgat aatggacctc
     1141 aatgaagtta agatattcaa agaaaatgta gatagtcatc atggatatcc tattacaata
     1201 agggaacctg acggtagacc tatgtctttt gaatggacaa gaaaagacaa aaacatgagg
     1261 cccatagaga taaggaaagg gagagaacct aatactggat atagtgacca ttttccaatt
     1321 caaggaatta ttaaaataat atgaaaaaaa ggctatatct gaaaacagag aaggatacaa
     1381 gaattatggt gtaggtggat gaatgacaga tagtagtgat aatagtagaa ggttcgacgg
     1441 tagttctttc caccaggaat cggtacaagt ggtcaaggaa tatgaggcgg tcattacgtc
     1501 aatgactaga caaggagata gatttacaag agtgcaagga tttgttaaga atgtaaaagc
     1561 aggacagaaa gttaaggtca aggagaaagt aggaaacagg catactacag caacaatggc
     1621 attctgatga tgatttactt attgtatgtc ttttttattg ttatatgatg ctagctatca
     1681 tcaaaatata caactatttt tttctctcga tctaatttta tagcttaagt ttgattttta
     1741 gttctcttaa aagatttctt actgtcacat cggttactcc tgctgcgtgt gccatttgaa
     1801 attgagttgt gtcttcaccc gtctttaaac atgatagata aagaactgtt gccgctaatc
     1861 ccattgggtc ttttccagca gatatttgct tttctatagc ttccttcata atgcttattg
     1921 cttgacgctt ggtattttca gtcaggttag ctttgtttgc aaccttggca atacatttca
     1981 ttggatcagc attaggaatt ttgatacaaa gttcagatat tatcatccta taattacgtg
     2041 caatgtcctt tcgttttagg ttgctagctg cagtaagatc ttttagtgtc catggaatct
     2101 ccatttctct acaagatgca tagatagcag cagtcacaaa tgcagttatt aattttcctc
     2161 tgactaatcc tcttgcctga gcttttctat aaatgtaagc agtctt
//
LOCUS       DASQSJ010000313         4302 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_195776, whole genome shotgun sequence.
ACCESSION   DASQSJ010000313 DASQSJ010000000
VERSION     DASQSJ010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4302)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4302)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4302
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195776"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1335
                     /locus_tag="VE223_06150"
     CDS             <1..1335
                     /locus_tag="VE223_06150"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HZC21207.1"
                     /translation="MTEEQIKEKTKKAQNAFTDWKKDIQKRADHLHDFAQELRKSKEE
                     LAKLMTKEMGRPIKEARAEVDKCAWVMEYFADNGKIFMNEEVINTDARKSTVAFEPLG
                     VIGSIMPWNFPYWQGLRFAAPSLMVGNTIVLKPASATMGCGLEIEKVFNRSGVPEGVF
                     QTVVLDGAATDVLIDSEDINAVTFTGSVSAGGKVAQRETSQIKKCVLELGGSDPFIVC
                     KDADIEKASSGAVKGRFVNNGQSCIATKRFVVVKDIANEFIEKFVQKTEKLKVGDPLS
                     ENTDLGPVVNASGLKTIDSQVKDTVKEGAEILTGGEQMGSKGYFYKPTIVKNVSTQMR
                     MAREEVFGPAAAIILADDEIEAVRLANDSQYGLGASIWTEDLDNAEKLSRFVHSGMVT
                     VNNVVVSDPRVPFGGVKKSGFGRELSKFSMLEFVNIKSIRFYDELVHHHYVE"
     gene            1368..1871
                     /locus_tag="VE223_06155"
     CDS             1368..1871
                     /locus_tag="VE223_06155"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC21208.1"
                     /translation="MTKSRTCDVLIIGGGSAGLRAAIEAHDAGAHVIVISKGKKEDPH
                     TTQARGGINAALGTMDPEDSWMMHAADTLREGEFLADYERVETLCKNAPDVINELVNW
                     GARFHREKDGRLTQRFFGAHTYRRTVFYEDWTGQEIVRVLLNQVNQRKKNRNYRQCTY
                     HKIIRTR"
     gene            1846..3174
                     /locus_tag="VE223_06160"
     CDS             1846..3174
                     /locus_tag="VE223_06160"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HZC21209.1"
                     /translation="MTKLLEPDDDVGGVGEEQAEREVKGAMGIDIEKREIVVFECKSL
                     ILAAGGYTRVYKVSSSRVSENCGEGVTLAYEAGADLVDMEMVQFHPTGMVWPKEAAGR
                     LATEAIRGEGGILLNSKGERFMKNYYPERMELGPRDVVARAVYSEIIAGRGTEHGGVW
                     LDVTHLPKEKILDRLPTMYEQFKELDGIDISKDKMEVAPTAHYSMGGVVVDIECRTKV
                     KRLFAVGETISQIHGANRLGGNSLLDTVVFGKIAGSQAARLAKEIVEIEKKTWPPSQL
                     SVNNNRGLFGDGMFIILKEPLKFSDEIQDLMTQYAGIVRDETKLKNGLKGILELKNKF
                     YSKDNILKESSINDESIVDQLKASWEVRSFLLACEAIIRCALIRQESRGAHYRSDFPK
                     LDDEKWKVNIFCRKEGDEMTIFKEKVKEIKGQLADFLNTHVKADHQREFE"
     gene            complement(3502..3690)
                     /locus_tag="VE223_06165"
     CDS             complement(3502..3690)
                     /locus_tag="VE223_06165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21210.1"
                     /translation="MSVTFATMPWYNENFDSDLERELHGRKIAHDGGNKNSLTLVLVQ
                     AHNLYGLLKHITSMTNLI"
BASE COUNT         1425 a          652 c          999 g         1226 t
ORIGIN      
        1 atgactgagg aacagataaa ggaaaaaaca aagaaggctc agaatgcttt tactgattgg
       61 aaaaaggata tacagaaaag agcagatcat cttcatgatt ttgctcaaga actaagaaag
      121 agcaaggaag agcttgcgaa gttgatgaca aaagaaatgg gaaggcctat aaaagaagca
      181 agggctgaag tcgataaatg cgcatgggta atggaatatt ttgccgataa cgggaagatc
      241 tttatgaatg aagaggtaat taacacggat gctagaaaaa gtactgtagc atttgaacct
      301 ctaggtgtta taggaagtat tatgccatgg aattttcctt actggcaggg actaagattt
      361 gcagctcctt cattaatggt tggtaacaca atagtactaa aacctgcaag tgccaccatg
      421 ggatgtgggc tagaaattga aaaggtcttt aacaggagtg gagtacctga aggagttttt
      481 caaacagtgg ttcttgatgg cgcagcgaca gatgtactta tagattcaga agatattaat
      541 gctgttacat ttacagggag cgtttctgcg ggaggtaaag tagctcagag agaaacatca
      601 caaataaaga aatgtgtgct tgaattgggt ggaagtgatc cattcattgt atgcaaggat
      661 gctgacattg aaaaagcatc atctggggct gtcaaaggta ggttcgttaa taatggtcaa
      721 agctgcatag caacaaaacg atttgttgtg gtaaaagata tcgcaaacga atttattgaa
      781 aagtttgttc aaaagacaga aaaacttaag gtgggtgatc ctctatcaga gaatacagat
      841 ttaggacccg ttgtaaacgc ttcaggatta aagactatag actctcaggt taaagatacg
      901 gtgaaagagg gtgccgaaat attgacaggg ggtgaacaga tgggaagtaa aggctatttt
      961 tataaaccta caattgtgaa gaatgtttct acacaaatgc gcatggcgcg agaagaagtc
     1021 tttggcccag ctgcagcgat aattctggcc gatgacgaga tagaagccgt gagacttgca
     1081 aacgattctc agtatggcct tggagcaagc atttggactg aagaccttga taacgcagag
     1141 aaattgtcaa gattcgttca ctctggtatg gtaactgtca ataatgtcgt agtttctgat
     1201 ccaagagtgc cttttggtgg agtaaagaag agtggatttg gaagagagtt gtcaaagttt
     1261 agtatgctag agtttgtcaa tatcaaatca attaggttct acgacgagct tgttcatcat
     1321 cactatgtag aataggttga tcgaaaaaaa tagatagttg aaatttcatg actaaatcta
     1381 gaacatgcga tgtcctcatc ataggtggag gttctgcagg tcttagggct gctatagaag
     1441 ctcatgatgc cggtgcacac gtaattgtaa taagcaaagg taagaaagaa gatccacaca
     1501 caacacaagc aaggggagga atcaatgcag ctcttggtac tatggatcca gaagatagtt
     1561 ggatgatgca tgcagcagat actctaagag aaggagagtt ccttgctgac tatgaaagag
     1621 tagagacact ttgcaagaat gctcctgatg ttataaacga actagttaat tggggtgcta
     1681 ggtttcatag agagaaagat ggtagattaa cacaacggtt ttttggggct cacacctaca
     1741 gaaggaccgt attttacgaa gattggactg gccaggaaat agttcgcgta ttgttaaacc
     1801 aagttaatca aaggaagaaa aatagaaatt atagacaatg tacttatcac aaaattatta
     1861 gaaccagatg atgatgtagg tggagtagga gaagaacaag cagaaagaga agtcaaagga
     1921 gcaatgggta tagatatcga aaaaagagaa attgtggtat ttgagtgcaa gtcgttaatt
     1981 cttgcggctg gtggatatac gcgtgtctat aaagtcagta gttctagagt ttctgaaaac
     2041 tgtggagaag gcgtaactct ggcgtatgaa gcaggtgcag atttggtgga tatggagatg
     2101 gtccaattcc atcccacagg gatggtttgg cctaaggaag cagcgggtag gcttgcgacc
     2161 gaagcaatcc gtggtgaagg aggcatatta ctgaattcaa aaggtgaaag atttatgaaa
     2221 aattactatc ctgaaagaat ggagctagga ccacgcgacg tagtagcacg tgcagtttat
     2281 agcgaaataa ttgccggtag aggtactgaa catggtgggg tttggttgga cgtgacccat
     2341 ctacccaagg aaaaaattct agataggctg cccacaatgt atgaacagtt caaagagctt
     2401 gatggaattg acatatccaa agataaaatg gaggttgcac ctactgcaca ttattctatg
     2461 gggggagttg tggtagatat cgagtgtcga acaaaggtta agcgtttatt tgctgttgga
     2521 gaaacaataa gtcagatcca tggtgccaat cgtttaggtg gaaatagctt gctggacaca
     2581 gtagtgtttg gaaaaatcgc tggcagccaa gcagcaagat tagcaaagga aatagtagag
     2641 atagagaaaa aaacttggcc gccatcacaa ctaagtgtaa ataacaatcg cggattattt
     2701 ggtgatggaa tgtttattat acttaaagaa ccgcttaagt ttagcgacga aatacaagat
     2761 ttaatgactc agtatgcggg aatagtaaga gatgagacaa agctcaaaaa tggtttgaaa
     2821 ggaattttgg aattaaagaa caagttttat tctaaggata atattttaaa agaatctagt
     2881 atcaatgatg agagtattgt tgatcaactc aaggcaagtt gggaagtaag atcattcctg
     2941 cttgcttgtg aagctataat aagatgcgct ttgatacgcc aagaaagcag aggagctcat
     3001 tatagatctg attttccaaa gttagatgat gagaaatgga aggtaaatat cttttgcaga
     3061 aaagaaggag atgagatgac aatttttaaa gagaaggtta aagaaatcaa aggccagttg
     3121 gcagatttct taaatacgca cgttaaagca gaccaccagc gtgaattcga ataattggat
     3181 gttgatgtag caatgttttc agaaatgtca ttaacttcat gagttttgtt ctatctaact
     3241 caggcatgga ttcaataatc gctgctatct ggctaatatt ttctttgata gcctggttta
     3301 aagcctagtt gtattatttg atgtagctat acctgaagta ctagctgcat tgattatttc
     3361 gacattttca tttctccgtg tttgtactgg tttgctcgag gtcatgatgt ttaaatcaga
     3421 tagtctttga gcttgatgat ggtatacaag caaggagata tctatctaaa tagatacctt
     3481 gcctaattct ctgttaagaa gctaaatcaa attcgtcata ctagtaatgt gctttagcaa
     3541 gccatataga ttgtgtgcct ggaccagtac caaggtcaag gaatttttat taccaccatc
     3601 atgggcaatc tttcttccat gtaattctct ttccaagtca gaatcaaagt tttcattata
     3661 ccatggcatc gtagcaaagg taactgacaa acatacagga aacttctttg ttattcctcc
     3721 aactggaata ttattcttca gtacctttct tgtgttatga tgactctatc tggtagactc
     3781 ctaagacagt gcttcgaacg ggttcaattg cgatccacaa caaccacgct tgatttcacc
     3841 tacctatctg aatcatggtt tcgtttatca tgtatagacg gttctaaatg attagaaagg
     3901 tgcaatttag ttgtgatttc ccatatacct atagtatgat tgaaatagaa gttgaatgaa
     3961 cttctgcttt caatgactct caaagtctcc tgaatgattg atacataatg tttccttatg
     4021 ttggcaatcg acgacattta atactctgtt aatgctgctc aagacaaaaa gaaagatatg
     4081 gggatacgat ctgcttacct taattatgtc tgatatgatt cggtatctaa aattggatga
     4141 tatacatttg aactcacaaa aatacttatt cttaacattt aattcaatta atattattat
     4201 atttatgtta ttattactat taatctccaa ttcgcttttt cataaggctt ttgctgcatc
     4261 gcctgcgttt gatcaagttt tttttgagga taaagaaagg tt
//
LOCUS       DASQSJ010000314         3355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_195811, whole genome shotgun sequence.
ACCESSION   DASQSJ010000314 DASQSJ010000000
VERSION     DASQSJ010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195811"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            308..862
                     /locus_tag="VE223_06170"
     CDS             308..862
                     /locus_tag="VE223_06170"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045735 - nutrient reservoir activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZC21211.1"
                     /translation="MQRENIHNAKEVKVNQNYFTGSVVLREVLGQMNSAEQEMYHVTF
                     QNGALTTLHYHESDQILIATKGKGVVGLIKEGISVTKFEIGDIDITFFESEGDTICVP
                     SNKLHFHGAIRGENFSHIAIRKMYKIDKTDETIKRAENKWEYDLISEETGNNDQQEIK
                     KIATEIAKKVQIAISKKLENIKQE"
     gene            complement(1372..>3355)
                     /locus_tag="VE223_06175"
     CDS             complement(1372..>3355)
                     /locus_tag="VE223_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HZC21212.1"
                     /translation="MYVMHYSNYIMLALATPLQFWIGWRFYRGLWDGINARASNMDTL
                     IAIGTTAAYLYSSTVTLIPSYFPFSSVYFETAAIIITLILIGRLLETRTKEKASNAVR
                     KLLDLQPRIAKVLRQKEGGGNKIVEEVEIPIEQVQEEDIMIIRPGERIPTDGIVVEGS
                     SSVDESAITGESIPADKTKGDEVIGATINKSGLLKVRAIKVGQDTVLSQIITLVEEAR
                     TGKAQMQRLVDQVAKYFVPGVLAIAIGVGIGWYFIGDIGFTFSLLAFVSVIIIACPCA
                     LGIATPAALMMGSGKGAENGILFKGGEYLEMAKKVNTIVFDKTGTLTKGKPSVTDIID
                     VSGLGEDEILRLAALAEAGSEHPLGQAVVNRAKEKGIIVSNPESFEAVSGHGLRAIYA
                     DHTILIGNRKLMLDNNISVNNKTNTTLSEVETQGKTATLVAIDNKIAGIIALADTIKD
                     GAREAVDSLKSMGIEVVMLTGDNERTARVVASRLGIDTVIAQVLPQEKEQVITRLMSR
                     EKKSAVAMVGDGINDAPALARADLGIAIGSGTDIAKETGGIILIKDDVKDIVTALDLG
                     RKTVSKIRQNLFWAFAYNAGLIPIAGGILVPFLGIGIFGWLPMLAGLAMAMSSVTVVG
                     NSILLGRYKPRFANKKSKRDDVERIPYTQTTTIQRQ"
BASE COUNT         1029 a          664 c          546 g         1116 t
ORIGIN      
        1 attcttactc ttctttcatc tgtctttcct ctcaagatga ggatggcact tttggaatct
       61 attgttatat cagaatttgt tgcaaaatta tgtggtttca caatataatg tgtcaactca
      121 atttcatcag gttaaacatt actatgctgt atatacccac aagtgtggtt tttctctttc
      181 ataaacgttt gattgtggaa tatcatacat tctctctatt gaacattctc tatgtcgaat
      241 attgttgtgt attatacata gcaaatactt ataattttca aacaaacaaa caagaagaag
      301 aaacactttg caaagggaaa atatccacaa tgctaaggaa gtcaaggtaa atcaaaatta
      361 ttttacaggt agtgttgtac taagagaagt tctggggcaa atgaattctg cagaacagga
      421 aatgtaccat gtaacgtttc aaaatggtgc tctgaccaca ctgcattatc atgaatctga
      481 tcaaatcctt atagctacaa aaggaaaagg agttgttggc ttaataaaag aaggaattag
      541 tgtaaccaaa tttgaaattg gggatattga tataacattc tttgaaagcg aaggagatac
      601 gatatgcgta ccatctaaca aattacattt tcatggtgcc ataagaggag aaaacttttc
      661 acatattgct ataagaaaaa tgtataaaat agataaaaca gatgaaacca ttaaaagagc
      721 tgaaaacaag tgggaatatg atttaatatc tgaagaaaca ggaaataatg atcaacaaga
      781 aataaaaaag atagcaacag aaatagcaaa aaaggtgcaa atagctatct caaagaaatt
      841 agaaaatata aaacaagaat aatccttcaa caagaattta agttcatatg cataagttct
      901 acagataata ttagcgagtc tgtacgtaaa cttgttgcac gggattgagt tactatctat
      961 tcatacctct tcttttaatc ataaggattt atactaaaag tattggattg tttataatga
     1021 tgacaattac atgatgtgat atctgataca aagtttagaa gaattacaaa caaggctaca
     1081 ggtataatca tgacagatat ggaacaactc tatgagcaga ttgtgattgg cgcaataata
     1141 accagtgcaa atcaaccttc gatatatcgt tttactgctt ctatcaaggg cgacattttc
     1201 tacatagatt attatttgtt atgaactggt gagccgcagg ggaggtagct cttgtccata
     1261 agcagaagtg ataaactata ctgctttttt tctttacatt attttttggt tgaagatcca
     1321 acaagaaaaa atattagtga cggctgctgc tcctcatgtc attacacatt tttactgtct
     1381 ttgtatcgtt gtagtttgag tgtatggtat cctctccaca tcgtctcttt ttgacttttt
     1441 atttgcaaac cgtggtttat atcttccaag caatatagaa ttcccaacta ctgttacaga
     1501 actcatggcc attgctaaac ctgcaagcat gggaagccat ccaaatattc caatgcccaa
     1561 aaaaggcacc agtatgccac cagctattgg aatcaatccg gcattatatg caaaggccca
     1621 aaaaaggttt tgtcttatct ttgacactgt tttccttccc aaatcaagtg ctgtcacaat
     1681 atctttaaca tcgtctttaa tcagtataat ccctccagtt tctttggcaa tatctgttcc
     1741 agagccaatt gcaatcccta gatcagccct tgctaatgct ggtgcatcat taattccatc
     1801 tcctaccatt gctactgcac tctttttttc tcgagacatt agtctagtta ttacttgttc
     1861 cttttcttgt ggtaatactt gtgctatgac cgtgtcgatt ccaagtctag atgcaactac
     1921 tctagcagtt ctttcattat cccctgtaag cattactacc tctataccca ttgacttgag
     1981 cgaatcaact gcttccctag caccatcttt tatagtatct gcaagtgcaa ttattcctgc
     2041 aattttgtta tcaattgcaa caagagtagc tgtttttcct tgagtttcaa cttctgaaag
     2101 agtcgtattt gttttattat ttactgagat attattatca agcattagtt ttctatttcc
     2161 aataagaatt gtatgatctg cgtatatggc tctaagacca tggccagata cagcctcaaa
     2221 tgactcagga ttagatacta ttattccttt ttctttggct ctgttgacaa cggcctgacc
     2281 taaaggatgc tccgacccag cttctgctaa ggcagctaaa cgaagtattt cgtcttcacc
     2341 taacccagag acatctatta tatcagtcac agatggtttg ccttttgtca aagtccctgt
     2401 tttgtcaaat actattgtat ttactttctt tgccatttcc aaatattcgc ctcctttgaa
     2461 aagtatacca ttttcagccc ccttacctga tcccatcatc aaggctgctg gtgttgcaat
     2521 tccaagagca catggacatg caattattat tacagataca aatgccaaaa gtgaaaacgt
     2581 aaatccaata tcaccaatga agtaccatcc aatccctact cctattgcta ttgctaagac
     2641 tcctgggaca aaatatttag caacttggtc tactaacctt tgcatttgtg cctttcctgt
     2701 ccttgcctct tcgactagtg taataatttg tgacagtaca gtatcctgtc caactttaat
     2761 ggctctaact ttaagtagac cgcttttgtt tattgttgca cctattactt catccccctt
     2821 tgtcttgtct gcgggtatac tttcacctgt gatagcagat tcgtcaacag aggaagaacc
     2881 ctccactaca atgccatcgg ttggaatcct ttctccaggt cttataatca tgatgtcttc
     2941 ttcctgtacc tgttctatcg ggatctcaac ttcttctact attttatttc ctcctccttc
     3001 tttttgcctt agcactttgg caatccttgg ttgaagatcc aacaattttc ttacagcatt
     3061 ggatgctttc tctttagttc ttgtctcaag cagtcttcca attaatatta aggtgataat
     3121 aatggctgcg gtttcaaagt atactgatga aaatggaaaa tagctcggaa tcaaggtaac
     3181 tgttgagcta tacaaataag cagcagttgt tccgattgca ataagtgtgt ccatattgga
     3241 tgcccttgcg ttaattccat cccataatcc cctgtaaaat ctccatccta tccagaattg
     3301 taaaggagtg gccaatgcta gcattatgta attactataa tgcataacat acata
//
LOCUS       DASQSJ010000315         4003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_356333, whole genome shotgun sequence.
ACCESSION   DASQSJ010000315 DASQSJ010000000
VERSION     DASQSJ010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_356333"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..763
                     /locus_tag="VE223_06180"
     CDS             <1..763
                     /locus_tag="VE223_06180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21213.1"
                     /translation="VIDYVVRYLAKFPEISDLSIVCEFDRFGKQIINYFEGKETLIGK
                     SITFIEDKKNGTGGALLRVEKNLRQGSNQDDACFLVWFADNLCALKIDDMIRKYDTIN
                     NNSIGNTGYKGAIIGMVVVRDERFEETGRVVLEKEKDCDYNIGNDNNGIAPLIKEFIE
                     KGKVKLERPEAVGIYLFSKRIFEYFHNESIETYDDDLCFDLSHDILEQIPRTGGKLFS
                     FNLGENIEWIDIESPAYAERHKDIIKKVLSQMDVS"
     gene            complement(838..1917)
                     /locus_tag="VE223_06185"
     CDS             complement(838..1917)
                     /locus_tag="VE223_06185"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HZC21214.1"
                     /translation="MRTGVSASRISRKPSLLWITEVGPIVSSPVFAQDTIYISTITGR
                     IFALNIIEKQIKWHLNIGSPIVSSPLLCDRILVAATYDSWIKGTSFTGKNLLLGIDTV
                     TGKQIWAYEIAGDVFSSPCNVDDDMMIFVGSINNTIYALDECSGNIQWKFETGGEIWS
                     SPSYNGSEIFIGSDDGFIYCLNLDGKLLWKTKLNGRIRSSSPCLSSVDENQNSSVFIG
                     TYNGGMFCLNQSNGIIRWSKHITKPVMASPATIDDKVFFAASDQKIYCLQKKDGSSIW
                     DFETGDKLWSSPSISEYDDVMFIGSLDSHIYGIDINTGRQTWKFPTMNMIDSSPAIAN
                     SMMFLGSRDGLLYIFGSENTPNYIR"
     gene            complement(2106..2669)
                     /locus_tag="VE223_06190"
     CDS             complement(2106..2669)
                     /locus_tag="VE223_06190"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HZC21215.1"
                     /translation="MTTTSAILAVIASRSIKKFCVLITDTENTLKKKKKNNNNNLPRL
                     WDSKMKSKTEYLMFNTSSRRAFINITPSVIKVVEESKIKEGLCLVNAMHITASVFIND
                     DESGLHEDFDTWLEKLASHSPTQQYKHNNTGEDNADAHLKRQIMGREVVVAITNGKID
                     FGPWEQIFYGEFDGRRNKRVLIKVIGE"
     gene            2882..3520
                     /locus_tag="VE223_06195"
     CDS             2882..3520
                     /locus_tag="VE223_06195"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZC21216.1"
                     /translation="MEELSSGDPNNIISLLSSPVGFVLNTDIIIVESDKSAEEASKLM
                     KERNARCVLASHKGEVVGIVSKTDILFKVLSQDRNPAKVKLREIMTSPVLAIDPKTTV
                     KEALSIMDKHLVRQVMVHAYSAVLGMVTRERIYQKLETISLSSEDTALQGTPVCLIDT
                     KSIAYMKDPNLANLKCPYCESPFDTKEGLSKHIDRLHGGAGILEGDVRRMFE"
     gene            3774..>4003
                     /locus_tag="VE223_06200"
     CDS             3774..>4003
                     /locus_tag="VE223_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21217.1"
                     /translation="MRNPFRGSGKSYNGRRPNRDDPYGYTTTSKSRLSSNKLKILAGI
                     VTFIVIILIMSESAVIVQAGHRGVVLYVGAVE"
BASE COUNT         1291 a          699 c          735 g         1278 t
ORIGIN      
        1 agttatagac tatgttgtaa ggtatttggc aaaatttcct gagatcagtg atttaagtat
       61 agtatgtgaa tttgacagat ttggcaaaca aattattaat tattttgaag gaaaagaaac
      121 tcttataggt aaatcaataa catttatcga agataagaag aacggaaccg gaggtgctct
      181 tctacgtgtt gaaaaaaatt tgagacaagg ttctaatcaa gatgatgcat gttttttggt
      241 atggtttgcg gacaacctgt gtgcattgaa aatagatgat atgatacgaa agtatgatac
      301 gataaataat aacagtatag gaaacacagg atacaaagga gcaattatag gaatggttgt
      361 agttagagat gaaaggtttg aggagacagg aagagtcgtt ttagagaaag agaaggattg
      421 cgactataat attggaaatg ataataatgg cattgctcct ctaatcaagg agttcataga
      481 aaagggtaag gtaaagcttg agcgacctga ggcagttgga atatatctat ttagtaaaag
      541 gatctttgaa tatttccata atgaatcaat agagacatat gatgatgatc tttgttttga
      601 tttatctcat gacatattag aacaaatccc aagaacgggc gggaaacttt tttcattcaa
      661 tcttggagaa aatatagaat ggatagatat agagtcgcca gcttatgcag aaaggcataa
      721 agacattata aaaaaagtat tgtcacaaat ggatgtatca tgatatagac tgtcagcagg
      781 agtagtagca tgctagacta gaaatatgca tcttgcactt cgagaatttg gatatcatca
      841 tcgtatataa ttaggtgtgt tttctgatcc aaatatatat aataaaccat cacgagatcc
      901 taaaaacatc atactatttg cgatggctgg tgaagagtct atcatattca tagtcggaaa
      961 tttccaggtt tgtctaccag tattgatatc gattccataa atatgcgagt ccaaggaacc
     1021 aataaacatt acatcatcat attcagatat tgatggagaa gaccatagtt tatctccagt
     1081 ttcgaaatcc catatgcttg agccatcctt cttttgaaga cagtatatct tttgatccga
     1141 tgctgcaaag aacaccttat cgtctattgt ggcaggagaa gccataacag gtttcgtaat
     1201 atgtttactc catcttatga ttccattaga ttgattcaaa caaaacattc ctccattata
     1261 agttcctata aatactgaag aattttgatt ctcgtcaaca gatgataaac atggtgatga
     1321 cgacctaatc ctgccattca attttgtttt ccaaagcaat ttcccatcta aatttaaaca
     1381 atagatgaag ccgtcatcag atcctatgaa aatctcactc ccattatatg atggagagga
     1441 ccatatttct ccgcctgttt caaacttcca ttgaatattt ccactgcatt catctagtgc
     1501 ataaatagta ttatttattg aaccgacaaa tatcatcatg tcatcatcaa cgttacacgg
     1561 cgaagagaaa acgtcacctg caatttcata tgcccaaatc tgcttcccgg ttaccgtatc
     1621 aattccaagc aacaagtttt ttcctgtaaa ggatgtgcct ttaatccagg aatcatacgt
     1681 agcagccact aaaattcgat cgcaaagcag gggtgatgag actataggac tacctatgtt
     1741 caaatgccat tttatttgct tctctattat atttaatgca aaaattcttc ccgttatagt
     1801 tgaaatgtaa attgtgtctt gtgcaaaaac aggagaagag acgattggtc caacttctgt
     1861 tatccataaa agagaaggtt tgcgactaat cctagaagca gaaactcctg ttctcatgga
     1921 gcatccccta aacatcttcc atgattgttt gtctgatatt cctaacgatt cctttgttcc
     1981 aatcaataat aatcataaat tacaatgtca tatgaaaaaa tatactttag taaccttagc
     2041 acacgttaaa atcccatctg atttgcttaa gaatgctttt tacattatcc atcagtatta
     2101 ttcccttatt caccaattac ctttattagc actcttttat ttcgtcggcc atcaaattct
     2161 ccataaaata tctgctccca tggaccaaaa tctattttcc cgttggtgat ggcaacaaca
     2221 acttcacgtc ccataatctg gcgcttcagg tgtgcatcgg cattatcttc acctgtattg
     2281 ttgtgtttat attgttgggt gggcgaatgc gatgccaatt tttcaagcca tgtatcaaaa
     2341 tcctcatgca aaccgctttc atcatcattt atgaagacac tagcagtaat atgcatcgca
     2401 tttactaaac aaaggccttc cttaatttta ctttcttcaa ccacttttat aacactcgga
     2461 gttatattga taaatgcacg cctgctactg gtattgaaca taaggtattc tgttttagat
     2521 ttcatctttg aatcccatag tcgaggcagg ttattattat tattcttctt cttcttctta
     2581 agtgtgtttt ctgtgtcagt aatcaacaca caaaattttt tgatagatct ggatgctata
     2641 actgccagaa ttgctgaagt tgttgtcact ggaactgatg tcttacataa gaataaaaga
     2701 taacgccagc aatccttttt tgcatgatgc attattccat tgaaaatata tattttggac
     2761 gtggatttgc ttttgtctat aagttttctt attgtcctta tgtgcgcaag caaagaaatc
     2821 tagttagccg tgtaatctag atcgagatca actataaata aaacatctct actatttgtt
     2881 tatggaagag ctgtcttctg gtgatccaaa caatatcatt tcacttctgt cttcacctgt
     2941 gggatttgtt cttaacactg atataattat agttgaaagc gacaagtccg ctgaggaagc
     3001 gtctaaatta atgaaagaga gaaatgctcg atgtgttcta gcttcccaca aaggagaagt
     3061 tgtaggcata gtaagtaaga ccgatatact ttttaaggta ctctcacaag atagaaatcc
     3121 tgccaaggtc aaacttcgag aaattatgac aagtccggta ctagctatag atcctaaaac
     3181 cacagtaaag gaagcacttt ctattatgga caaacacctt gtaagacagg taatggttca
     3241 tgcctattct gctgttctgg gaatggttac acgggaacgt atatatcaaa agctggagac
     3301 aatatcgctt tcttcagagg atactgcact tcaaggaacg cctgtttgtc ttattgatac
     3361 gaaatctatt gcatatatga aggatcctaa cctggctaac ttaaaatgtc cgtattgtga
     3421 gtctcccttc gatacaaagg agggtctatc aaaacatata gatagacttc atgggggagc
     3481 gggtatactt gaaggtgatg taagacgaat gtttgaatag atattcatat aggtctggtt
     3541 gactgtttat tatggttggt ctatctacat tgcagagcca ctaatgcctt ggttattgtt
     3601 gttgtctttg gattatctgc tcagacaatc tatgactatc ggtgatttga aagcaaatcg
     3661 gcggtatcaa aaaaagtacc gagtatctca ttactcgtgt gatctgacca aattttgcgt
     3721 catatttaaa ttgcctttta atctcaataa tatattgttg aaatgatagt tatatgagaa
     3781 accctttcag gggatctggc aagtcctata atggaagaag acctaataga gatgatccat
     3841 atggatatac aacaacatca aagtctcgtc taagctctaa caagctaaaa atcctagcag
     3901 gaatagtaac gtttattgtt ataattttaa tcatgtcaga atctgcagtt atagtacaag
     3961 caggacacag aggagtggtt ctctacgttg gtgcagttga gaa
//
LOCUS       DASQSJ010000316         3082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_515327, whole genome shotgun sequence.
ACCESSION   DASQSJ010000316 DASQSJ010000000
VERSION     DASQSJ010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_515327"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            152..775
                     /locus_tag="VE223_06205"
     CDS             152..775
                     /locus_tag="VE223_06205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21218.1"
                     /translation="MTRLDERKKNLKNGETEQRDSPTQLLRRTRLSFLVTCGLLIIFA
                     TSYAYLEYYYINDPILGKTANLTVKGGTHRVATPIIGGLYSYHLYPMMVIFILVGFGP
                     FFDSISFNILGRHERRKAASLGVANIISAMLIEDFTWFFYRWWLPLDNDPKKGLLMQA
                     SDWTTRNLGYISVPHTGLFGSFVIPYWYVIAIIGAGVFYYYAFKRPK"
     gene            complement(1110..1463)
                     /locus_tag="VE223_06210"
     CDS             complement(1110..1463)
                     /locus_tag="VE223_06210"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HZC21219.1"
                     /translation="MSSKAGFKKVANKRDFQKGKLLRVEPDGKPIVLSEVDSKIYAMD
                     AICTHEGAPLEEGNLDQYSLTCPWHYAVFDVRNGKVSDATVWATDLKSYPVEVEEETG
                     DILVNPNGINDKTML"
     gene            1776..2123
                     /locus_tag="VE223_06215"
     CDS             1776..2123
                     /locus_tag="VE223_06215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21220.1"
                     /translation="MVQRQIAFEKTQRRRKALTLSEISPMWNERLKGQLPFPLSYTWW
                     RWYFELKYASKCVVGEAHNFSSSYIYKCAECDDIGWRFMLYFALHSYSKLEENKQRFL
                     IHWNEKHAESLHL"
     gene            2385..2966
                     /locus_tag="VE223_06220"
     CDS             2385..2966
                     /locus_tag="VE223_06220"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03618 family F420-dependent PPOX class
                     oxidoreductase"
                     /protein_id="HZC21221.1"
                     /translation="MSKKGNNNKDNAVEFVDSPPQDSGFYDSMTETNVEEASTTSKED
                     VAKLFEGRNLVFVSTLSKDGSPHVTPVWADIQNDLILINTSEAAAKNKHVIRDPRIAI
                     SIVEHYNPYNMISIKGRVVERSTDGADEHLKKLAKKYLGIGKYYYRHPKNRRVILKIK
                     PEKIMGLSLHPAFYFLAYSPWYSPKRYLENKKP"
BASE COUNT         1029 a          557 c          557 g          939 t
ORIGIN      
        1 actctagtct tcttacctat gaaggatcga tatacctgtt gaagtcttaa atactacacc
       61 taccgaaggg ttaggtttaa tacatggtat tttttcttca atccagtcat acgaatctga
      121 acatgacagc aacaagaaca aaggggaggg tttgacgcgc ttggatgaaa ggaaaaagaa
      181 tttaaagaat ggtgaaactg aacagagaga ttcccccact caactcctac gtagaacacg
      241 tttatctttt cttgtaactt gtggcttgtt aataatattt gcaacaagtt atgcgtatct
      301 tgaatattat tacattaatg atcctatctt gggaaaaact gctaatctca cggtaaaggg
      361 tggaactcat cgcgtagcga caccgataat cggtggcctt tactcttacc acctatatcc
      421 aatgatggta atctttattc ttgtgggttt tggccctttc tttgacagta tcagttttaa
      481 catccttgga agacatgaaa gaagaaaggc tgcatcacta ggagtagcaa atattatatc
      541 cgctatgcta attgaagatt ttacatggtt tttctataga tggtggttac cacttgataa
      601 cgatcccaag aaaggcctgt tgatgcaagc ttcagattgg acaacaagga acttgggtta
      661 tatatctgta cctcatacag gtttatttgg tagctttgtt attccttatt ggtacgttat
      721 tgcaattata ggagctggtg ttttttacta ctatgcattt aagaggccta aatagccact
      781 tgacctgcat gtatatgact acaggtatga tgtatgccct gctatgtcaa aagcttaaat
      841 gaagataagg tggttccgaa taggtattaa caatactgac aatttaatta tacgccaaga
      901 aaaaacttga ttcatttatt cttagtttaa ttgtttagaa atctagattc tgattagtag
      961 gagagagcaa taaaacgcat gtatatgaaa tacaaagaaa aagtttgcag caggcgcgaa
     1021 tatgaaaaat tctaccttgc atctttgcta aagataataa ataaaatgga gaacccagag
     1081 atatgccatc gtctttaaaa atatctattt cataacatcg tcttatcatt gattccatta
     1141 ggatttacca atatatctcc tgtctcctct tcaacttcta ctggatagga ctttaaatct
     1201 gtagcccaaa ctgttgcatc ggaaaccttt ccatttctta catcaaacac agcataatgc
     1261 caagggcatg taagactata ttggtctagg ttaccttctt ccaatggtgc accttcatgt
     1321 gtacaaatag catccatcgc ataaatcttg gaatcaacct cagacaaaac tatcggcttg
     1381 ccgtcaggtt caactctgag tagcttacct ttctgaaaat cccgcttgtt tgctaccttc
     1441 ttaaatcccg cttttgatga catagatgag aaattatatg atatgaattc tatttacatg
     1501 ttttctcaca acaaagattt gttattccta ggtctcaaat agtagtaact ggcaataaaa
     1561 gaatcactag gaaatctatt atactaaaaa accaacagtt atgaatgaat ttttcactaa
     1621 tatcattcaa acaaccaact cggctactag tattattaaa ccaggacggt tcaatcatct
     1681 aatgcttcca agccgggatg ataaagtacc ttgccatgat gctatttcta ggatcggtat
     1741 taaatttcta atactatgaa caccatagta atgttatggt acaaaggcaa attgcttttg
     1801 aaaagaccca aagacgacgt aaggccttaa ctctaagcga gatttcgcct atgtggaatg
     1861 aacgcctaaa aggacagctg ccatttccgt tatcctatac atggtggcgc tggtactttg
     1921 aactaaagta cgcgtcaaaa tgtgtcgtag gagaggcaca taatttctca tcatcttata
     1981 tatacaaatg tgcagagtgt gatgacatag gctggaggtt tatgttgtac tttgcgctcc
     2041 attcatattc taaactagaa gagaataaac agagatttct catacattgg aatgaaaaac
     2101 atgcagaaag ccttcatctg tagcatctga aaaagcaggt ttagaaaatt aaatgttgta
     2161 gttgacgcaa aagaaccaac aatcagcgac cagaaagtaa taataaacgt taaagtaact
     2221 tgcgtgatcc aaaagatagt ttcattgttt ctggcggatt gccaaggttg gctcctatac
     2281 ccagctaccc aaaatgaaca tatttattcg caagcaaata gacatatatt tttagaatat
     2341 ctcgtagaaa ccctttatat cttattttta tttcttaact ttctatgtct aagaaaggta
     2401 ataacaataa agataatgca gtagaatttg tcgattcgcc cccacaagac agcggtttct
     2461 atgacagcat gacagaaaca aatgtcgaag aggcaagtac tacttcaaaa gaagatgtgg
     2521 ctaaactctt tgaaggcagg aatttagttt ttgtttccac tttgtccaaa gatgggtctc
     2581 ctcatgttac ccctgtgtgg gccgatattc aaaatgattt aattctaata aatacctctg
     2641 aagcagctgc gaagaataaa catgtaataa gggatccgag aattgcaatt tctatagtag
     2701 aacactataa tccgtataat atgatttcaa tcaagggtcg agttgtagaa cgtagtacag
     2761 atggtgctga tgaacatctc aagaagctcg caaagaaata tctaggtata ggcaaatact
     2821 attatagaca tccaaaaaac agaagggtca tcttaaaaat aaagccggaa aagataatgg
     2881 gtttgtcact tcatcctgct ttctatttcc tagcatactc tccatggtat tccccgaaac
     2941 gttatctaga gaataagaag ccttgactgg aaaatgatgt ggctaatata atgttgataa
     3001 tggttgagat caactactcg ctcaaagtca tcaataatat aatagtcaat tcatattgag
     3061 aaagcattaa agactaaaaa ta
//
LOCUS       DASQSJ010000317         5436 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_58506, whole genome shotgun sequence.
ACCESSION   DASQSJ010000317 DASQSJ010000000
VERSION     DASQSJ010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5436
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58506"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..306
                     /locus_tag="VE223_06225"
     CDS             88..306
                     /locus_tag="VE223_06225"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HZC21222.1"
                     /translation="MKQNMLVYDPFMGIGTTALACLKLGIDFIGTEIDSEYIKVAKDD
                     INNKKKILNNRLEMQNDKDNVLVRKTKI"
     gene            complement(612..884)
                     /locus_tag="VE223_06230"
     CDS             complement(612..884)
                     /locus_tag="VE223_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21223.1"
                     /translation="MVEESPGSAGGRGGGSGSRRVGRVIGFSCNNGTCTKYFEVSERE
                     KVEQFDIPYSAIAMDIKLSTGKPFVVQGIVDPELVKSYRSLVNNLK"
     gene            1271..1819
                     /locus_tag="VE223_06235"
     CDS             1271..1819
                     /locus_tag="VE223_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HZC21224.1"
                     /translation="MVKTASTPTLRTGQRSPHFRLKGVDGKMYSLEDFNSKSLLVVFI
                     CNHCPYVRARIGDIINLQSTFKPPELQVIAINSNDPSYEGEGFENMVKFAREYKLNFP
                     YLIDDSQDVAKAYGAVCTPDPFLLDMEHRLVFHGRINDALEPGMTPNIPIMENNIRKV
                     LRNEKVEKDFDPSIGCSIKWKN"
     gene            complement(1845..3716)
                     /locus_tag="VE223_06240"
     CDS             complement(1845..3716)
                     /locus_tag="VE223_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HZC21225.1"
                     /translation="MERFDVAIIGGGSAGLAALKQLSNLEKQAVLIDAGKTIGSKNVS
                     GGILYSKKPKNGKIYNVEDVYGDGFVSDAPLERLITKYILHATSKDKIFSIDLTSAHK
                     YQANFGYSVLLNKLNSWFAKEAAASAQKQGGGIIPGVHVKSITWHNDKTIVETDELDE
                     FEVKAIIAADGVNSEIAEITGARNKFTAEELYQGVKVVVKLPEEIMEQRFEIGPNEGA
                     AHLFAGDITLNHIGGGFVYTNRDTLSAGAVYHYDSLIQKPDEPYTLVNAILNNPMVKE
                     FIKDEVAVKADIDKSLPKEEQLRTRFAVSKLVNTWDGLRHAYYSPTGKAKLIESGKYK
                     SEAEIKTRIDSLRQELSDKYKAKFVTDYVELEYSAKLIPDGKRCRMKKPYYKNVLFVG
                     DAAGRGIFVGPRIEGLNVGIDDAVRAANAVARSIDRNNFTHNYLGDYYTRFVEDSPYT
                     RDMKEIDKDYLKTFLDATKDVPKDIVGSRYGMIFRLMSSGTLRGLAVGFANILGYDRL
                     LPIVESVETYVQVPVEIAEKSGTRVSSTYTPTIPTIAQRIAKLKYDDDNLSHIKVLHP
                     KSEFMKKMVTLCPTKCYSIENEDVMLQHEGCIECGTCAKETEWRHPRGEKGINFQYG"
     gene            complement(3719..4915)
                     /locus_tag="VE223_06245"
     CDS             complement(3719..4915)
                     /locus_tag="VE223_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HZC21226.1"
                     /translation="MITSEGSYRHLYVVIEHEEGRPIPVSLEMLGEARRLMDDFNKKY
                     SSNEKVVAIVLGNNIRKLCEELILYGADAVIYAESPELQYSRNLIDTKIISQIAINKE
                     CVAKISPEYVEHFKKPRYMFFAADNIGRHLSSTVLAELESGLASDINKLVIEDLEIKH
                     EHKTKGQAMTYAKTLEMYRPDFSGFLWTTILCLDNRNPAIEREYHPQACSIIPGVFQP
                     LVRDSTRSGIIVEYIPKLEEQDLNVKILSRKIIKSAVDFDIHKAIISFGRGIKDSPEE
                     NIKLIEQLANELDAEIGISLPISKKPYVVSETITSKYMTPDRVIGTSGRKVSPLLYIA
                     VGISGAMQHIAGMKESEFVIAINPDENSPIKDDCDLFIKGRMEEVVPILIEELRKQKL
                     VMEVRK"
     gene            complement(4918..>5436)
                     /locus_tag="VE223_06250"
     CDS             complement(4918..>5436)
                     /locus_tag="VE223_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta"
                     /protein_id="HZC21227.1"
                     /translation="FSGHRASDGETGQTGPQTAWKLGYTFLGNVIDYDIDLEKRTVTA
                     KRLITLQGFYDIIEEVEAPLPVFITVDPSYKPAFNTVSQRLAFVKYQKEGNERAQSYK
                     KYLKVFNAQQLGVDPKFVGLPGSPTIVYKVEKIPKAKASRKAEVVDASDRVQIAKVVT
                     RIHEILEGIVIK"
BASE COUNT         1571 a         1100 c          912 g         1853 t
ORIGIN      
        1 atcccatatc ccactattca agaaggacgt ccacatccag cagtgtttcc catgaaactg
       61 ccttatcttt gaataaaact acatgggatg aaacaaaata tgcttgttta tgatccattt
      121 atgggaatag gaacaactgc cttggcatgt ctaaagttag gaatagactt tataggtact
      181 gaaatagata gtgaatacat caaagtggcc aaggatgata taaacaacaa aaagaagatt
      241 ctcaataacc ggttggaaat gcaaaatgat aaggataatg ttttggttag gaaaacaaag
      301 atctaaggtt tcttaaacca taaaggattt atctatttat acagatatat actatccgta
      361 tgtcttgttg gacagacgaa gaacggttac ttgaaacagc atttagtctt tccaaaaggt
      421 tggttaaggt tcctttctct acgctagtta agtgagcctt gttgctctta ccgatgagaa
      481 cacatctcgt ttaggtttag ctgcatctgg attcatcttc gttttgagat gtgatgcttg
      541 gatcgataat tgcacccagc atactcgtga agggtttggt catcaaacaa attttcattg
      601 acatcttgat gttattttag gttatttact aaggatcgat acgatttgac aagttcagga
      661 tcgacaatcc cctgcacaac aaatggctta cctgttgaaa gtttaatatc cattgcaatg
      721 gcgctgtaag gaatatcaaa ctgttcgacc ttttcgcgtt cgctaacctc aaaatacttt
      781 gtacaagttc cattattaca tgaaaatcct ataactctcc caactcgtct gcttccagaa
      841 cctcctcctc ttccacctgc agagccaggg gattcctcaa ccattaaaat gaagatgtcg
      901 cttctgatgt tagtaacaag atcaatatca ttttctgata ctacgagctt tctttgcgat
      961 gactgtaaga cattatcaat atgctcttct acactatttc accaactgtt gattatttcc
     1021 acaatatatt tgattgttat tttctcttta atttatatct ttttttactg tattgcataa
     1081 cgtacacctt taaatattta caatagtgtg tctggccaaa gaaattgtca aatttaagaa
     1141 tcaatcagga attcgtacgt attcaccaaa gagatgagaa agacgttgtc aagaatcttt
     1201 tagcgatgac gatgatttgc ctttaataga accgcacaat ttttaatatc cttattcaag
     1261 atatagcgac atggtaaaaa ctgcttcaac cccgactcta agaactggtc aaagatcacc
     1321 acattttaga ttaaaaggag tcgatggcaa gatgtattct ctggaagatt tcaacagcaa
     1381 atctttgctt gtagttttca tatgcaatca ctgcccttat gttagggcaa gaattggtga
     1441 cattattaat ctgcaatcga cattcaaacc tccagaattg caagtaatag ctattaatag
     1501 caatgatcct agttatgaag gtgaaggttt tgaaaatatg gtaaagttcg caagagaata
     1561 caaattaaat tttccttatc taattgatga tagtcaagat gtcgcaaagg catatggagc
     1621 agtttgtacg ccagacccat ttctactgga tatggaacat agactggtat tccatggtag
     1681 gattaatgat gcattggaac ctggaatgac tccaaacatt ccaattatgg aaaataacat
     1741 aagaaaggtt ttacgaaatg aaaaagtaga aaaagatttc gatccatcta taggttgctc
     1801 aataaaatgg aaaaattaac tggatagatc tttgattctg cgttttagcc gtactgaaag
     1861 ttaattcctt tctcgccccg aggatgtctc cattccgttt ctttggcaca tgtcccacac
     1921 tcaatacatc cttcgtgttg aagcataacg tcttcatttt ctatgctata gcattttgtt
     1981 ggacataatg taaccatttt tttcataaat tcactttttg gatgtaatac tttaatgtgt
     2041 gaaagattat cgtcatcata ctttaatttt gctatacgtt gagcaattgt tggaattgta
     2101 ggagtatacg tcgatgaaac tcgagtacct gatttttcag caatctcaac tggcacttgg
     2161 acatacgtct ctactgattc cactattggc aaaaggcgat cgtatcctaa tatgttagca
     2221 aatcctacag caaggcctct taatgtacca cttgacatta atctaaagat catcccatag
     2281 cgagagccga caatatcttt tggaacatct ttcgtagcat ctagaaacgt ctttagataa
     2341 tctttatcta tttccttcat gtctcttgta taagggctgt cttctacaaa ccgcgtataa
     2401 taatcgccta gataattatg tgtgaaattg ttcctatcaa tggatcttgc aacagcattg
     2461 gcagccctta ctgcatcatc aattccaaca ttcagtcctt cgattcttgg accaacaaaa
     2521 atgccacggc cagctgcatc acccacaaac aaaacattct tgtagtaagg ttttttcatt
     2581 ctacatcgct ttccatccgg aattaatttt gcactgtatt ctagctcaac ataatcagtt
     2641 acgaatttgg ccttgtattt atcgcttaac tcttgacgaa gagaatcgat tcttgttttg
     2701 atctctgctt ctgatttgta tttgccgctt tcaataagtt ttgctttgcc tgttggcgaa
     2761 tagtatgcat ggcgtaaccc atcccacgta ttaacaagct tactaactgc aaaacgtgtc
     2821 cttaactgtt cttcttttgg aagggacttg tcaatatctg cttttactgc aacttcatct
     2881 ttgataaatt ctttaaccat tggattattc aatattgcat tgacaagtgt gtatggttca
     2941 tctggtttct gtattaatga atcgtaatga tatactgcac cagctgatag cgtatcccga
     3001 ttggtataaa caaaaccgcc gcctatgtga tttaaggtaa tatcgccagc aaaaagatgt
     3061 gcagccccct catttggtcc tatttcaaac ctttgttcca tgatctcctc gggtagtttt
     3121 actacaactt ttacaccttg atacagctct tccgcggtga atttatttct agcacccgtt
     3181 atttctgcta tctctgaatt taccccgtca gctgcaatta ttgcctttac ttcaaattca
     3241 tctagttcat cagtttctac aatagtttta tcattatgcc aagtaattga tttgacgtga
     3301 actccaggaa tgattccacc gccctgtttt tgggcacttg cagccgcctc ttttgcaaac
     3361 catgaattta atttatttaa aagaacagag tagccaaagt tggcttgata tttatgggca
     3421 gatgtaagat caattgaaaa tattttgtct tttgaagtag catgaagaat gtattttgtg
     3481 ataagtcttt ccagaggagc atcagataca aatccatctc catagacatc ttcaacattg
     3541 tagatcttgc cgttttttgg tttctttgaa taaagaattc cacctgatac gttttttgag
     3601 cctattgtct tcccagcatc aatcaacaca gcctgttttt ccaaattgga taactgtttg
     3661 agagcagcta acccagctga acctccacca attatagcaa cgtcaaaacg ctccatcttt
     3721 actttctaac ctccatgact agtttttgtt ttcttaattc ctcaattaga atgggtacta
     3781 cttcttccat tctgcctttg ataaaaagat cacagtcatc tttaatcggc gagttttcat
     3841 caggattaat tgcaatgaca aactcagatt ccttcattcc tgcaatatgc tgcatcgctc
     3901 cgctgattcc aactgcaata tatagcaagg ggctaacttt tcgtccactt gtcccaatta
     3961 ctctatcagg agtcatgtac tttgacgtta ttgtttcact tactacatac ggtttttttg
     4021 aaattggtaa tgatattccg atctctgcat ccaactcatt tgctagttgt tcaattagtt
     4081 taatattttc ttctggtgaa tctttaattc ctcggccaaa gcttatgatt gccttatgga
     4141 tatcaaagtc aaccgcactc ttgataattt tgcgactcaa tatctttaca ttaaggtctt
     4201 gctcttctaa ttttggaata tattctacaa ttattccgct tcttgtacta tcacgcacaa
     4261 ggggttgaaa tactccagga attatactac atgcttgagg atgatactcc ctttctatgg
     4321 caggatttcg attatcaaga catagaatag tcgtccacag aaaacctgag aaatcgggtc
     4381 tatacatttc aagtgttttt gcataagtca ttgcctgacc ttttgtctta tgttcatgtt
     4441 tgatctcaag atcttcaatt acaagtttgt taatatctga agcaaggcca gattctaatt
     4501 ctgccaatac tgtggaagac aaatgtctac ctatattgtc agcggcaaaa aacatgtatc
     4561 ttggcttttt aaaatgttca acatattctg gagagatctt tgccacacat tctttattta
     4621 tagcaatctg gctaattatt ttagtatcga tcaaatttct agaatattgt aattctgggc
     4681 tttctgcata aattactgca tcagccccat ataatatcaa ttcttcgcat aactttctga
     4741 tattatttcc cagtacgatg gccacaactt tttcatttga ggagtatttt ttgttaaaat
     4801 catccatgag tctcctagct tcacctagca tttctaggct aacaggaatt ggcctacctt
     4861 cttcatgctc aattactaca tataaatgcc tgtaactgcc ttcacttgtg atcatcgtca
     4921 tttaattact attccctcta aaatttcatg tatcctagta acgacctttg ctatttgtac
     4981 acgatcggag gcatctacta cttcagcttt tctacttgct tttgctttcg gaatcttttc
     5041 taccttgtat acgattgtgg gagagccagg aaggccaaca aatttagggt caacacccag
     5101 ctgttgggca ttgaaaactt ttaagtattt tttataactt tgagcccgtt catttccctc
     5161 tttctgatac tttacaaatg ccagtctttg tgaaacagtg ttaaatgccg gcttgtatga
     5221 gggatcgact gtaataaata cagggagagg tgcctctacc tcttctatta tatcataaaa
     5281 cccttgcaag gtgatcaagc gttttgctgt gacagttcgc ttttcaaggt cgatatcata
     5341 atcaatgaca ttgcctagaa atgtataacc aagcttccat gctgtctgag gacctgtttg
     5401 accagtctcg ccatcagaag ctctgtgtcc tgaaaa
//
LOCUS       DASQSJ010000318         2028 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_196047, whole genome shotgun sequence.
ACCESSION   DASQSJ010000318 DASQSJ010000000
VERSION     DASQSJ010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196047"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(399..1211)
                     /gene="uppS"
                     /locus_tag="VE223_06255"
     CDS             complement(399..1211)
                     /gene="uppS"
                     /locus_tag="VE223_06255"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020267040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HZC21228.1"
                     /translation="MGIEIIGSLAFIESILKHSGLYSIYERRLESQILKNPLPNHIAI
                     ILDGNRRWAKYQLAGINNGHFVGADKAEELLNWIHDLQIRITTLYVLSTENLERQDEE
                     LENIYKLLHLKLEKLYNDSRIHRRQMKIKAIGNLMLLPRTLQEILYKLEEATSHYNSM
                     FLNIAIAYGGQKELVDAIKKIILMIKYGKIKEDDIDEKVIESCLYTSHLPQPEPDLIL
                     RTSGEKRLSGFLVWQSAYSELIFMDVFWPEFRKIDLMRAIRTYQCRKRRFGK"
     gene            complement(1304..>2028)
                     /locus_tag="VE223_06260"
     CDS             complement(1304..>2028)
                     /locus_tag="VE223_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HZC21229.1"
                     /translation="ISVQRIIIKHSRSVEYSYAVLGRYIKMLVYDPRYSKFFLGVPGA
                     LLVVSGLATVFGLTREAIALALSILGGAFIIRAFDIDKALSSLGRPTPTAFIRIFSAF
                     AGVLIILASVANGFSNIPPEAITPNMGLINIIKDRVIVGSFVHGSITLLWIGIATILG
                     GTLLSNWFKGSVTAMSDILRLEVLALLYFPILQFTSILTERTSPFTLISSLLIGLAIT
                     LVAATFLFQYFRNKKGGEVLKH"
BASE COUNT          626 a          405 c          332 g          665 t
ORIGIN      
        1 attctgtttc atgtgattca tttttaattg aaaagataat tgcccctgaa gacctttcag
       61 ctatcatcaa caattaaaaa gagcccgatt tactaagctt ttcgagagaa ctcaaattgt
      121 cttcggcctg tgaagtcttc gtttctctct atctctctgt tttattacga ttgttatgta
      181 tgtgtctgta cttgaagcct tcttttttcc tgaggtctgt tgcatttctg ggagaataat
      241 catgaatgtc ttcccactgc cgtaacgaca tccaataact acaataccat ttttttaggc
      301 ctctgtcgta atctccgtgt tgtggcatct aatacctagg tgattttaca gataacgtac
      361 cactttgaaa tattgaaatt cactgttaat cttaaatatc actttccaaa ccttcgtttc
      421 ctacattgat aggtcctgat agctcgcatt aaatcaattt tccggaattc gggccaaaat
      481 acatccataa atatcaattc actgtaagca ctttgccata caaggaagcc gctgagacgt
      541 ttttctccag atgtccttaa tattagatca ggttctggtt ggggcaaatg tgaagtatac
      601 aaacaagatt caatgacttt ttcatctata tcatcttctt tgatttttcc gtatttgatc
      661 attaatatga ttttctttat agcatcgact agttcttttt gtccaccata agcaatagcg
      721 atatttagaa acatagaatt gtaatgagac gtagcttctt caagtttata taaaatctct
      781 tgaagcgttc ttggaagaag catgagattc cctattgcct taattttcat ttgacgtcta
      841 tgtatccttg aatcattata gagtttttct agctttagat gcaaaagctt ataaatattc
      901 tctagctcct catcctgcct ctctaaattc tccgtggaca aaacgtataa cgtagtgatt
      961 ctgatctgaa gatcatggat ccaattcaaa agttcctctg ctttgtcagc accgacaaaa
     1021 tgaccattgt ttattccagc caactggtat tttgcccacc ttctatttcc atctaagatt
     1081 attgcaatgt gattaggaag aggatttttt aaaatttgtg attctagtcg acgctcataa
     1141 atactataga gaccactgtg cttaagaatg ctctcaataa aagccaaact accaataatc
     1201 tctataccca tttatagaca cacctcttac acgctaatca atgattttac tgttattatt
     1261 gagacaagtt tattattgaa tagaaattta taataattta ttatcaatgt tttaggactt
     1321 ctcctccctt tttgtttcta aaatattgga ataagaaagt ggcagctacc aatgttatgg
     1381 ctaaaccgat caaaagggat gaaattaatg taaatgggct agtgcgttcg gttaaaatcg
     1441 aagtgaattg caagatagga aagtagagca acgcaagaac ttcaagacgt aatatatctg
     1501 acatagcagt aacactaccc ttaaaccagt tgcttagcaa agttcctcct aatatagtag
     1561 caataccgat ccagagcagt gtaatactac catgtacaaa gcttcctaca attaccctat
     1621 cctttattat atttattaat cccatgttcg gcgtgattgc ttctggagga atatttgaaa
     1681 atccattcgc tactgaagcc aagataataa gcacacctgc aaaagccgag aagatcctga
     1741 taaaggcagt aggagttggt cttccaaggg agcttaatgc cttatctata tcaaaggcgc
     1801 gaataatgaa agcaccgcca agaatgctta atgctaatgc tatagcctct ctggtcaatc
     1861 caaatactgt ggcaaggcca ctcacaacca atagtgcacc cgggactcct agaaagaatt
     1921 ttgaataccg tggatcgtat acaagcattt tgatatacct acccaaaact gcgtatgaat
     1981 attcaacact tcgactatgc ttgataatga tacgctgaac agagataa
//
LOCUS       DASQSJ010000319         3104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_296573, whole genome shotgun sequence.
ACCESSION   DASQSJ010000319 DASQSJ010000000
VERSION     DASQSJ010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_296573"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(333..1049)
                     /locus_tag="VE223_06265"
     CDS             complement(333..1049)
                     /locus_tag="VE223_06265"
                     /inference="COORDINATES: protein motif:HMM:NF012320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21230.1"
                     /translation="MVGIGGAGSKLAVKSSKLLGCKCTLISNDRKDLDKNYNAILINS
                     DSWVNPSSYKIRSFAQSSAKAIRSAVNDFQTVIVIANLAGKAGAAIAPIVCREAKLAS
                     VDMIISLAILPFKFEKSLIFQAGISLKRLRDLSSATLVIDSNAILEHNPDLSSEECIG
                     ITDGAVNEFLSSISKGYIEAAPLSDLDNLDVYLMPSTEVETRFDRYDPISAIIPKENV
                     LDWDEMDSYPDIEINIPNLE"
     gene            complement(1193..2635)
                     /locus_tag="VE223_06270"
     CDS             complement(1193..2635)
                     /locus_tag="VE223_06270"
                     /EC_number="2.8.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase"
                     /protein_id="HZC21231.1"
                     /translation="MKGYNELSYNLDGIKKVPAIQPINLGPNTPYAGDRLKSLGEKKK
                     VWIEAYGCSANKADSEMILGQLQNHGYKIARDEQESSINIVVTCSVKDATEHKMFYRI
                     KQLAKSKKPIVIAGCLPKADRERVECLFPSASLLGPHSIDRAVDIVKNSISGKKIVAL
                     EDSISDKINIPKIRINPVISIVEIASGCMSECTFCQTKLAKGQLRSYRVGDIIRQIRQ
                     DLAEGCKEIWLTSTDNGCYGKDIGSNLVELLRSCCGEDGSYKIRVGMMNPMYLPSMVD
                     ELTEVYAANEKIFKFLHIPVQSGSDIILRKMKRGHSVRIYRDIVNAFRSKIPKMTIAT
                     DVIIGFPSETEEDFERTLSLIRETEPDIVNSSKYSARPNTPAASLKQLNSQVVKERTQ
                     KLHSLISKISKKRNSIWKGWEGELVIDHIDNNNKSIESRNYAYKPVVVKCADLPPSSL
                     ASTKGCRLGTKIRARIIDYSSKSLTGVLVE"
BASE COUNT          907 a          624 c          534 g         1039 t
ORIGIN      
        1 tgtacaagat gaacggcttc cccgcacagc ctacgagaag ggaagctttt cgaagcttgt
       61 ctaaaaacct ttcgccgagc cacttgtcta aggttacttg tttttcatca ataattattt
      121 gcctcgtcaa gcctgaatgt attaaaagtt tgtatttatt gaaacatgac aaccattatt
      181 tgctagattg tatattttgt tagctatctt atctgctaga taataattta gctaatcaga
      241 tatatctgtt ttatttataa tccaagacta aaagaagcaa ccacaccggg agcatcatct
      301 gctgatatcc gatgcaaaga gagtaaccga ttttattcta aattcgggat attaatctct
      361 atatcaggat atgaatccat ttcatcccaa tccaacacat tctctttagg aataattgcc
      421 gaaattggat catatctatc aaatctagtc tccacttcag tcgaaggcat aaggtaaaca
      481 tctagattat ctaagtcgga caatggggct gcttcaatgt atccttttga aatagaagat
      541 agaaattcat taacagcacc gtctgtaatt ccaatgcatt cttcagatga aagatcagga
      601 ttgtgctcaa gaatagcatt actgtcgatt actaacgttg cactagacaa atcccgaagt
      661 ctttttagcg agatgccggc ttgaaatata aggctcttct caaatttgaa tggcaatatt
      721 gctaaggaga ttatcatatc aacagaagcg agtttggctt ctctgcatac gatcggcgca
      781 atcgcagcgc ctgctttgcc agctagattc gcgatgacaa ttacagtctg aaaatcgtta
      841 accgctgatc taattgcctt ggctgaagat tgtgcaaatg atctgatctt ataacttgat
      901 ggatttaccc atgaatcaga gttaatcaaa atagcgttat aatttttgtc tagatctttt
      961 ctatcattgc ttattaatgt gcacttacat cctagcagtt tacttgattt aactgcaagt
     1021 ttgctccctg ctccaccaat accgaccata atcattggat ctcttatttc aattttattg
     1081 taactacgaa tgttatttat gacttagtcc ctcttggatt gagactatag tttgtttaaa
     1141 atcttaggtg attaaaaact taaatctaaa ttgtataaaa gaattaagct gcttattcaa
     1201 ccaatacgcc tgttaatgac ttgcttgaat aatcgataat gcgagctctg atcttggttc
     1261 ctaaccgaca ccctttggta gatgccaatg atgatggagg tagatctgca catttaacca
     1321 caactggctt gtatgcatag ttccttgact ctatagattt gttgttgttg tcaatatggt
     1381 caataactaa ttctccctcc caccctttcc aaatggagtt gcgttttttg ctaattttac
     1441 ttattaagga atgaagcttc tgcgtacgtt cctttaccac ctgtgaattt agctgtttaa
     1501 gagaagcagc aggtgtattt ggtctagcac tgtattttga cgaatttact atatctggct
     1561 ccgtctctct aatcaagctc aaagttcttt caaaatcttc ctctgtctct gaagggaaac
     1621 ctataattac atctgttgca atcgtcattt ttggaatttt ggagcggaat gcgttaacta
     1681 tgtcacggta aatcctgacg ctatggcctc tcttcatttt tcttaatatt atatcactac
     1741 cactctgaac aggaatatgt agaaacttga aaattttctc gttagctgca tagacttctg
     1801 tcaactcgtc taccattgaa ggaaggtaca ttggattcat cattcccact cttattttat
     1861 agctaccatc ctccccgcaa catgatctaa gcaattcaac aagattagat ccaatatcct
     1921 ttccataaca tccattatca gtagacgtca gccatatctc tttgcagccc tcagctaggt
     1981 cttgccgtat ctgtcttata atgtctccta cccgataact tcttagttga ccttttgcaa
     2041 gctttgtctg acagaacgta cattcactca tacagccgct tgctatctct actatgctga
     2101 ttacagggtt tattcgtatc ttgggaatat tgatcttgtc tgaaatagag tcttcaagtg
     2161 caacgatttt tttaccagag atactgtttt tgactatatc gactgccctg tcaatggaat
     2221 gtggtcccaa tagacttgcg gatggaaaca gacactctac tctttccctg tcagctttag
     2281 gaaggcatcc tgcgatcaca atgggctttt ttgatttagc taattgtttg attctataga
     2341 acatcttgtg ttcagttgcg tccttcacgg agcatgtcac aacaatgttg atcgatgact
     2401 cttgttcatc tctagctatt ttgtatccat gattttgcag ctgtccaagt atcatttctg
     2461 aatctgcctt gtttgctgag cagccatatg cttcaatcca cacttttttc ttttcaccga
     2521 gcgattttag cctgtcgccg gcatatggtg tattaggccc tagattgatt ggttgaattg
     2581 caggaacttt ttttatacca tccaagttat aagataattc attataacct ttcaattaat
     2641 acactatttc tagcagctat tgatatatgg atgtatacat taccttagat gttatagcta
     2701 ttaagcttcc cattacaagg atgaacatgt gtaacttttt tgattaagga cataaaacat
     2761 gtcataagac aattcatttt gatcgcaaaa cggtcgtcaa attgagacgc attaaaatca
     2821 aattggctct atatatagca ccaaagacta acttaattgg gtttaaatga cggaaaaaat
     2881 gacgatagtg gatagaaaga catttaatga aaagagtgcc agtgagactc tcgccttatt
     2941 agcaagagac atgaaacata gctaggcctc ataaacactg gaatatcaaa cacatcaggt
     3001 catatggatg cctgcacccg ataaaaacac aatatgtcca acgacttgtt tatcgtctca
     3061 tagaagggtt tacaggaaaa aagcatttta aaaattactt gtaa
//
LOCUS       DASQSJ010000320         5709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_196141, whole genome shotgun sequence.
ACCESSION   DASQSJ010000320 DASQSJ010000000
VERSION     DASQSJ010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5709
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196141"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VE223_06275"
     CDS             <1..202
                     /locus_tag="VE223_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HZC21232.1"
                     /translation="LAFGNPQQFVNNAIGAFASLAWAMGVTAVIIKVMDMVWPQGIRV
                     TPKEEEIGLDLTQHGERAYVTG"
     gene            896..1483
                     /locus_tag="VE223_06280"
     CDS             896..1483
                     /locus_tag="VE223_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21233.1"
                     /translation="MPIRIIQIVTIVLISFISLSVIWRGLIPIVICGLGIVLVYGGIA
                     IPSYALTLPAESYFKGIRVLIDQQIISMATEGYFFLGIAMVVLSMIIAYKPTLLYVKN
                     RPKPSHSLWAGYQKWYDNVQITGGYTEPNVPLKTLMNEQEKYLLWRYEYILTRIYNTP
                     YLVKPDGFVPKSSIVLRDNESGRMIGVAKYSGYFI"
     gene            1826..2515
                     /locus_tag="VE223_06285"
     CDS             1826..2515
                     /locus_tag="VE223_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HZC21234.1"
                     /translation="MTDTKFTIVRLNLDNNKFEILVKPVPALEYKLGKRTDLSNVLIS
                     EEIYSDANKGSRAASEKLVKYFKTTDSTEVAKQILSRGELNLTTDQRRKMVEEKKKQI
                     IQYINKSFIDPKTHIPHPPLRIESAINEARVVIDPFKRPEDQVKVIIDSLRKILPLKS
                     ETLRLTITVPPQFSAQSYNILKTTGNFNGEQWLADGSLRVTLEINAGMKGALLDRIGS
                     ATKGSAQVIEG"
     gene            2779..3567
                     /gene="rrp4"
                     /locus_tag="VE223_06290"
     CDS             2779..3567
                     /gene="rrp4"
                     /locus_tag="VE223_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HZC21235.1"
                     /translation="MQEIKRKYVVPGDKVIEGNFRPLMNVIKAGNSIIATRIGIAETG
                     RDGVKVIPLSGVYIPRVSDIVIGKIIDHSSLSWEVDVNSCFSAHLPAQDVFGRDFSPA
                     RDDMGKQLAIGDLIAARIIAFDRTRDPMLTIQDKDLGKIPHGELLKISATRVPRLIGK
                     RGSMIQTIEQATQTRILIGQNGIVVVMGRNLDGIKLATRAIRMVEEEAHTANLTQRVK
                     ALLNVPDSPQTEGSTIIQSQNNQKDEEIQSTIEEVEEEIEGEKI"
     gene            3564..4304
                     /gene="rrp41"
                     /locus_tag="VE223_06295"
     CDS             3564..4304
                     /gene="rrp41"
                     /locus_tag="VE223_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HZC21236.1"
                     /translation="MSQAKNLIDESGRRTDGRTADELRQVKITVGVVKNADGSAFIEF
                     GRNKVIAAVYGPREVHPKHMALPDRCILRCRYHMSPFSTDTRKNPAPSRREVEISKVM
                     RESLEPALILEDYPRAAIDLFVEVLQADGGSRCAGITAASVALADAGINMRDIVSACA
                     AGKIDNKIVLDINDTEDKEGGADMPVAYMPHLEQVTLLQLDGILTPEQFNECLDKAIG
                     GCNMVYEIQRQALMQKYFGNETELKEEQ"
     gene            4301..5125
                     /gene="rrp42"
                     /locus_tag="VE223_06300"
     CDS             4301..5125
                     /gene="rrp42"
                     /locus_tag="VE223_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex protein Rrp42"
                     /protein_id="HZC21237.1"
                     /translation="MSSSKRSTIIVEHLRKQQMWDAISKGKRLDGRNLNETRPIEIEQ
                     DIIKKANGSAKVKLGNSEVVAGVKVETGEPFEGLENKGALILSAEVLPTASPYIEPGP
                     PDEETVELARVVDRGIRESNMIDLDKLVLVPGKIVYTIFVDCSIINTDGNLFDATSYA
                     VVSALISSKLPIFEIQDGRVVDTGNSQDPPITTIPISITTVRIGDVVILDPTAEEEAC
                     MDARITIATNSNGHYTAIQKGSTGAFTIEQIKKAAEIARIKGEEIRTKLKELPKTG"
     gene            5202..5357
                     /locus_tag="VE223_06305"
     CDS             5202..5357
                     /locus_tag="VE223_06305"
                     /inference="COORDINATES: protein motif:HMM:NF013905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21238.1"
                     /translation="MVYRTLKQKRRCPLCGSLRFNRIASGIWYCPKCKYKVAAGAYDI
                     NIEKLQS"
     gene            5326..5595
                     /locus_tag="VE223_06310"
     CDS             5326..5595
                     /locus_tag="VE223_06310"
                     /inference="COORDINATES: protein motif:HMM:NF011470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HZC21239.1"
                     /translation="MISILKNYRARIQISFKARAHKSTLIAKSIYSALNPDAKVSSDS
                     EAITRISVHVNNLFIEIEADNIASLRAMINSYLRLINVSYKCIAS"
BASE COUNT         1979 a          961 c         1138 g         1631 t
ORIGIN      
        1 acttgcattt ggaaacccac agcaatttgt gaataatgca ataggagcat ttgcttccct
       61 agcatgggca atgggtgtta cagcagtaat aatcaaggtc atggatatgg tgtggccgca
      121 gggaatcaga gttactccaa aagaagagga aatcggactt gatttgactc agcacggaga
      181 aagagcatac gtcactggct agaaaatatt tcctcttttt tgtttttatt tactgaacct
      241 atatgtttta catcaatcat agtgaaatat tttagatatt tgagtaattt gtgtctcgtt
      301 tttgttcaaa gtgccgcctt tcttcaacct atacgaagtt tgatcaacag tttgattaaa
      361 gctacttgtg atatgtcgca ccttgattct cttcggggtt tatctaatct agaacagcat
      421 ttgtcattat ttatatgctg tttgtatttg acgaatccaa gcatatgaac ttaaacagga
      481 cagtaaaaag ataactttgt cgatatttgt aaaatacgcg actgatcaag tttttcatgt
      541 ttaccgtgac tacttgtctt gtcttcatag tgtttgccgc gctgttgttc gtaacaatgg
      601 caaaatagat attcacagcg attcaattac catatatgtt aataaattac catggtttta
      661 gttatactta attgtgttga agaaagctta aagtctgcag caatgtaatg ttagcatatt
      721 ggaaccagga tttccttcaa caaatgatta ccataaaaga tatagatggt acatgattac
      781 cgatcaatgg tttcaaaaaa ataaatctac aataatagca ttgagcatta tcagtatcat
      841 acttctgttt tttcttcacc tttttaccat cacaatccaa atctcactaa attcaatgcc
      901 tataaggatc attcagattg tcactatcgt actaatctct ttcatatctc tttcagtaat
      961 ctggaggggc ttaataccta tagttatctg tggtcttggt attgttttgg tatatggtgg
     1021 cattgctatc ccatcttatg cactgactct acctgccgaa agctacttca agggaataag
     1081 agtattaatt gatcaacaaa ttatctcaat ggctacggaa ggttacttct ttctcgggat
     1141 tgcaatggtt gtcctaagca tgataattgc atacaagcct acgctacttt atgtcaaaaa
     1201 cagacccaaa ccttcacatt cgttatgggc cggctatcaa aaatggtacg ataatgtgca
     1261 gattactggc ggatatactg aacccaatgt gcctctcaag accttaatga acgaacaaga
     1321 aaaatacctt ttatggcgct atgaatatat tttaaccaga atctataata caccttatct
     1381 tgttaagcca gatggcttcg ttccaaaaag ctctattgtt ttaagagata atgaaagtgg
     1441 tagaatgatt ggtgtagcaa aatacagtgg gtatttcata taatattctt gatttacaag
     1501 cgaatataat aattagcaaa cagaaatata atatctaata agcgtaaaat ttctaaatat
     1561 tcctgaagct gctatatcat gatttaatca ctgtaactgc aaatgcaaac gattaagagc
     1621 aaccaaatat aaatattcta agacagatta actctagttc aaatggatga tagagtttgg
     1681 aagtgcttta gatgtgaatt atattttgaa tcatctgaaa ctgctaacct tcatgaatca
     1741 ttaactcacc ataaattaag aaaagttctg aaatttaagc actaacatgc atatatattg
     1801 tatatgagat ctattctaca gtctaatgac ggatactaaa tttactattg ttcgtctaaa
     1861 tctagataac aacaagtttg aaattttagt gaaacccgtc ccagccttag aatacaaact
     1921 tggcaaaaga acagatttat caaacgtatt aatttcggag gaaatttatt ccgatgctaa
     1981 caaaggttca agggcagcta gtgaaaaatt agtaaaatat ttcaagacaa cagattcgac
     2041 agaagtcgcc aaacaaattc tttctcgggg tgaacttaat ttgactactg accaacgtcg
     2101 aaaaatggtg gaggaaaaga aaaaacaaat cattcaatat attaataaaa gttttataga
     2161 tcccaaaacg catatcccac atccgccttt gcgaattgaa agtgcaataa acgaagcaag
     2221 agttgttatc gaccctttca aaagacccga agatcaagtc aaggtcataa tcgattcact
     2281 tagaaagatt ttgcctctaa aatcagagac cttaagatta accataactg ttccgccaca
     2341 attttctgcg caatcctata atatattgaa gactactggt aattttaatg gtgaacaatg
     2401 gcttgcagat ggttctctaa gagttacgtt agaaataaat gctggaatga aaggcgcctt
     2461 gcttgatagg ataggatctg caacaaaagg ttcggcacaa gtaatagaag gataaaaaga
     2521 ttgccttttg tgactatatc aaatcagcac tatacggctg ctgttgctaa tggagataac
     2581 aaagaattct agctcacatt atgaatcaaa cattgaatta agttttctaa tatacaataa
     2641 tacaaggtct gctccaggac actttctttt taacacttaa aatataagga tgatcttact
     2701 caccagacag tagagcaaag atggaaagga gtattttgta taataagact tttgcattag
     2761 aggtgacatg ttaataatat gcaagaaatt aaaagaaagt atgtagttcc tggtgataag
     2821 gttattgagg ggaattttag acctctaatg aatgtaatta aagcaggcaa ttctattatt
     2881 gccacgagga ttggaattgc agagactgga agagacggtg tcaaagttat accactgtca
     2941 ggcgtttata ttcctcgagt aagcgatatt gtaataggaa agattatcga tcattcttcg
     3001 ctgtcttggg aagtagatgt taactcttgc ttctctgccc atttgcctgc acaagatgta
     3061 tttggaagag atttttctcc agctagggat gacatgggta agcaattagc aataggggat
     3121 ttaattgctg caagaattat cgcgtttgat aggacaagag atccaatgct aacaattcag
     3181 gacaaagatt taggtaagat accgcatggt gaattgttaa aaatttctgc aactcgagtt
     3241 ccgagactta ttggaaagcg tggttctatg atacaaacaa ttgagcaggc gacacaaaca
     3301 agaattctaa ttggtcaaaa tggaattgtt gttgttatgg gaagaaattt agatggaata
     3361 aagctagcaa caagagcaat taggatggtt gaagaagaag cccatacagc gaacctaaca
     3421 caaagggtta aagctttgtt gaacgtacca gattctccac aaacagaagg aagcaccatt
     3481 atccaaagtc agaataatca aaaggatgaa gagattcaat ctaccataga agaagtagaa
     3541 gaagagatag aaggcgaaaa aatatgagcc aagcaaagaa cctcattgat gaaagtggaa
     3601 gacgaactga tggtcgaact gcagatgagc taagacaagt caagataact gtaggagtgg
     3661 taaaaaatgc tgacggctcc gcatttatag agtttggtag aaacaaagtt attgcagctg
     3721 tctatggccc tagagaagtc catccaaaac acatggcact tccagatcga tgcattttaa
     3781 gatgtaggta tcatatgtct ccattctcta ccgatacgcg taagaaccct gctccttcaa
     3841 gaagagaagt tgaaatttca aaagtgatga gagaatcact agaacctgct ttaatattag
     3901 aagattatcc acgtgctgca atagacctat ttgtcgaggt attgcaagca gatggtggtt
     3961 caagatgtgc gggcattaca gctgcatctg tagcgttagc tgatgctgga atcaatatgc
     4021 gtgacattgt atcagcatgc gccgcaggta aaatagataa taaaattgtt ctcgatatta
     4081 atgatacaga ggacaaggag ggtggagcgg atatgccagt tgcctacatg ccacatcttg
     4141 aacaagtaac attattacag cttgatggca tattaactcc agaacagttc aacgaatgcc
     4201 tagacaaggc aataggtggt tgcaatatgg tttatgaaat tcaaagacag gcattaatgc
     4261 aaaagtactt tggtaacgaa accgagttga aggaagaaca atgagctcat caaaacgttc
     4321 aacaataata gtcgaacatt tgcgtaaaca gcaaatgtgg gatgcaattt caaagggaaa
     4381 gaggcttgac ggaagaaatc taaatgagac aagaccgatt gaaattgaac aagatattat
     4441 aaagaaagca aacggctctg caaaagtaaa attagggaat tcagaagttg ttgctggggt
     4501 aaaggttgaa acaggcgagc catttgaagg actcgaaaac aagggcgcat taatattgtc
     4561 tgcagaagta ttgcctactg catcgccata tattgaacct ggtcctccag atgaagaaac
     4621 agtagaatta gcaagagtag tagacagggg cattagagaa tcgaatatga tagaccttga
     4681 taaattagtt ttagttccag gaaagatcgt ctatacaata tttgtcgatt gtagcatcat
     4741 caatacagat ggcaacctgt tcgatgcgac atcatatgct gtagtttcag cattaattag
     4801 tagcaaactt cccatttttg aaatacaaga tggaagggta gttgatactg gaaacagtca
     4861 agacccgcca atcactacta taccaatctc gatcacaaca gtaaggattg gcgatgtagt
     4921 gattttagat cctacagctg aagaagaggc atgtatggat gccagaatta ccatagccac
     4981 aaattcaaac gggcattata ctgcgataca gaagggatca actggtgctt ttactattga
     5041 acaaataaaa aaagcggctg agatagcaag gattaaagga gaggaaatac gaaccaaatt
     5101 aaaggagttg cctaagactg gttagtagaa agaaacaggg tcgtacagga ctcaaaggtt
     5161 taggtgttaa atttggagct actgtacgca agaggtatgg aatggtatac cgcacactaa
     5221 aacaaaagcg acgttgcccg ttatgcggtt ctctacgatt taatagaatc gcttcaggta
     5281 tatggtattg cccaaaatgc aaatacaaag ttgcagctgg ggcttatgat atcaatattg
     5341 aaaaactaca gagctagaat acaaatttcc tttaaagcac gagcccataa atccaccctc
     5401 atcgccaaat ctatttattc cgcattaaat cctgacgcaa aggtttcttc tgattcagaa
     5461 gctataacaa gaatttctgt tcatgtcaat aatttattta tagagattga ggctgacaat
     5521 attgcaagtt tacgtgcgat gatcaattcc tatttacgat tgatcaacgt ttcctacaaa
     5581 tgcatagcaa gttaacggta tgattttatg atggtggctt atatggaaca ttgtattaaa
     5641 atgagtgagc aagaacttcc accatggctt agagagcaag tagcacggtt acaacagctc
     5701 caacagaat
//
LOCUS       DASQSJ010000321         3681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_37775, whole genome shotgun sequence.
ACCESSION   DASQSJ010000321 DASQSJ010000000
VERSION     DASQSJ010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37775"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VE223_06315"
     CDS             complement(<1..388)
                     /locus_tag="VE223_06315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21240.1"
                     /translation="MTICFDGSSCLYNEPRSYTISAELPKLYSYLRSLGQASRKSYIE
                     LSTYLRIIETSKTMKGKATMALVLSLVVGIIINYGVMTPTAKVFATAIGEHQPQPPPE
                     ANQDPLSEQQRYNAAAMKVLSQMSTPV"
     gene            complement(720..1043)
                     /locus_tag="VE223_06320"
     CDS             complement(720..1043)
                     /locus_tag="VE223_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21241.1"
                     /translation="MIDLFKLMTSRHQDHHLDNNSHYVTGLTGAACILKCLSKGYSKS
                     QIIHEKFEGDGQLVSVWIEFLKDKNWVVEKEVKEKEKDDVDDTNLKVTKKGKMWMNRF
                     ESVDN"
     gene            complement(1211..1384)
                     /locus_tag="VE223_06325"
     CDS             complement(1211..1384)
                     /locus_tag="VE223_06325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21242.1"
                     /translation="MISQLWVCPALIVPVASDEPGAACTQFTVKIGVLNPAASYCGKV
                     SGDFCHNTSVPFG"
     gene            complement(2075..2542)
                     /locus_tag="VE223_06330"
     CDS             complement(2075..2542)
                     /locus_tag="VE223_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21243.1"
                     /translation="MLDYFEMERVIEELAKAYPAQCATTWFKITKNHKPSEEEYRNKV
                     VEYMRQFEYLLATYPQSIETDKLKDLIKKSLAREIEKVLKGNNNDVERRHKHYVDNSP
                     SVVLTKEEKSQKNIDNTTAAQEEEQQQKEIQYKDNSEVVDKRRRKKKLIMVSE"
     gene            complement(2804..3112)
                     /locus_tag="VE223_06335"
     CDS             complement(2804..3112)
                     /locus_tag="VE223_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21244.1"
                     /translation="MTKDPNSSRYITDIQSKITIKHCHESALMAAAHILVCLTKEGKS
                     IKNIAKDFDNNLDLVTVWIDYMAAINWIFKNPDGSNKWTATDNGKKWVEKIPWYNKER
                     "
     gene            complement(3208..3621)
                     /locus_tag="VE223_06340"
     CDS             complement(3208..3621)
                     /locus_tag="VE223_06340"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HZC21245.1"
                     /translation="MHTLYQQTIDGWNTGSGDAFAAPYTDDSDFVGFDRTYLKGRQQI
                     ASFHQMLFDKFLKGSCLIGKIRSIRFVTNDIAIMIAVGGTVMAGQSDIEPERNSIHTI
                     VAVKRDSSNWYFTAFQNSRAQYIGRPEESQALTSE"
BASE COUNT         1054 a          702 c          612 g         1313 t
ORIGIN      
        1 tgactggtgt gctcatttgg gataatactt tcatagctgc tgcgttgtag cgttgttgtt
       61 cagagagtgg atcttgattg gcttctggcg gtggttgtgg ttggtgttct cctatagcag
      121 tagcaaatac tttagcagtg ggagtcatga ctccatagtt tatgattatc ccaactacaa
      181 gcgacagaac taaagccata gttgcttttc ctttcatggt tttagaagtt tcaataatac
      241 gtaaataagt tgacaattct atatatgatt ttcttgaagc ctgtcccaaa gatcgtagat
      301 aagaatatag cttgggaagt tctgccgaaa tggtatacga gcgcggctcg ttataaagac
      361 atgaagaacc atcgaagcaa atggtcattg tgtgagcggt acacaatcgg gcaattcatt
      421 tcaatattct gtattctgat ttatttaggc ttcaaataca gccattactt ccaaaaagat
      481 attattgtca tagttgatca tcaaaactgc aaaagctata gctaagcgct aataacgtct
      541 acatatgaac aaacaaaaag tgaggataga ctgactttgg atctagtcaa ttcagaaata
      601 tagaaaatgg atgtaaaata acttgtcagt agagaaccta atgttttctg caggaattat
      661 gatatttctg tattaagaga gcatatcgaa tgtttgtaca ccactttacc actcataact
      721 caattgtcaa cagattcgaa cctgttcatc cacatctttc ctttctttgt taccttcaga
      781 ttagtatcat ccacatcatc tttttctttt tcttttactt ctttttctac aacccaattc
      841 ttatctttta aaaattctat ccatacagaa acaagttgtc catctccctc aaatttttca
      901 tgaattattt gactcttact gtaaccttta gatagacact tcaaaataca agctgctcca
      961 gttaagcctg ttacatagtg actattatta tcaagatgat ggtcttggtg tcttgatgtc
     1021 attagtttga ataggtctat cactagtatc ttattaccac cacatacatg acggcaatca
     1081 ctctatattc cgaattatca tttgtctaac ccgtatttat tcatatttgt caactattaa
     1141 atatctgaaa taattgttat gctaacaatt gatgggtttg agttgcttca tcaactcacc
     1201 agtaacagat tcatccaaaa ggtacgctgg tattgtgaca aaaatcaccg ctaactttac
     1261 cacaataact agcagcggga tttagaactc ctatttttac agtaaattgt gtgcaagctg
     1321 cccctggttc atctgatgca actggtacta taagtgctgg acaaacccaa agttgcgata
     1381 tcataaacga gctaaacggc taatttgaga actacatcac aaacggctat cctaaggtaa
     1441 acaaacactg taacgaaaaa ggctaaacct ccacattttt tgttagaatc aatctctagc
     1501 ttgcaagact tgaaaactca gtcaatcacc accacgatgg aaaatggcaa tcgttatctt
     1561 ctttgcagcg tatgctatta gctcgttatc gcggtatatt cttactcctt tcataggaca
     1621 gtggccaata cttggaaatg ctgtaattta tactggaata ctagttgttt cacttaccta
     1681 ctttgcactc cctattggga accgtttgct gcggcattgg ttatatccaa gaagtatatg
     1741 atctccgaat ggatagacta tgaacttatt tttgtttcct actagattgg agattacgga
     1801 tatacaagac tataatgctt tattcattcc ttttgttcaa tagtttttcc atttcttctt
     1861 ttgctgctct gatgttgcat gtatagctta atgtgactta cgcaaatggc tttctcggat
     1921 aataactgat acttgaatat cctaaaatgc agtgcatgta cgtgttcatc ataggatatc
     1981 aacatatctt gaattttacc ttttgataag taaagctctt ttcgcaatga atgaatgttt
     2041 tatcctgcct gaaatacgta actatatgtt gttattattc tgataccatg attaacttct
     2101 ttttacgtcg acgcttgtct actacttcgc tattgtcttt atattgaatt tccttctgtt
     2161 gttgttcttc ctcttgcgct gctgttgtgt tgtctatatt tttttgactt ttttcttctt
     2221 ttgttaaaac aacagacgga gaattatcca catagtgttt atgccgcctt tccacatcgt
     2281 tattatttcc tttaagcacc ttttctattt ctcttgccag agattttttg attaggtctt
     2341 tgagcttatc tgtttcaatg ctttgtggat aagtggctag caaatattca aattgtctca
     2401 tgtactcgac tactttgtta cgatattcct cctcagaggg tttgtgattt tttgttatct
     2461 tgaaccatgt ggttgcacat tgagcaggat aggctttagc aagttcttca attacacgtt
     2521 ccatttcaaa atagtctagc ataaatgcaa actcctatga gaaagggtaa ttagaagacc
     2581 ttctttgttt ttcaatctgc ctcttatata taatgttctt ctattattta ttctcttatt
     2641 agtggcatga tgctttaatg ggcatataga cataaaatca aaatctttgt taaatacata
     2701 tttgtatagt cagtattggc tgcgtaggta aagagatcct atcatgatta cctttgaatg
     2761 ttagcataag tccattccaa agcatgagat acaacaggtt ctgctacctt tccttgttat
     2821 accatggtat tttttctacc catttttttc cgttatctgt tgctgtccat ttattgctac
     2881 catcaggatt cttgaagatc caatttattg cagccatgta atctatccaa acagttacca
     2941 aatccaaatt attatcaaaa tcctttgcaa tgttcttgat acttttgcct tctttagtta
     3001 gacataccaa aatatgagcc gcagccatta gtgcagattc atggcagtgt tttattgtaa
     3061 ttttactctg aatatctgtg atataccttg aactatttgg atcttttgtc atgtcgctgg
     3121 aatctgtctc atattatatt aaaggattat acgttatatt acacagttag gcactatatt
     3181 aaatgatata gttgattgag cataccttca ttctgatgtg agcgcttgag attcctctgg
     3241 tcttccaata tactgtgcac gcgaattttg aaaagcagta aaataccaat tgctgctatc
     3301 gcgttttaca gcaacaatgg tatgaataga atttcgttct ggctcaatgt ctgactgtcc
     3361 tgccattaca gttccaccaa ctgcaatcat aatagcaata tcattagtca caaagcgtat
     3421 acttctaatt tttccaataa gacaactgcc tttaagaaat ttgtcgaaaa gcatctggtg
     3481 aaatgaagct atttgttgcc gtcctttaag gtatgtccta tcaaaaccaa caaaatcgct
     3541 atcgtctgtg tacggagcag caaaagcatc tccacttcct gtgttccatc catcaatcgt
     3601 ttgttgataa agagtatgaa tagcagccca tcatcaggtt tcgaaaccca atagattgga
     3661 tttatgtgag gtcatgatcc a
//
LOCUS       DASQSJ010000322        11057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_58763, whole genome shotgun sequence.
ACCESSION   DASQSJ010000322 DASQSJ010000000
VERSION     DASQSJ010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11057
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58763"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(141..214)
                     /locus_tag="VE223_06345"
     tRNA            complement(141..214)
                     /locus_tag="VE223_06345"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(178..180),aa:Pro,seq:cgg)
     gene            468..890
                     /locus_tag="VE223_06350"
     CDS             468..890
                     /locus_tag="VE223_06350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HZC21246.1"
                     /translation="MNSVVKVGATKERKIRIDSNQSTSFLWEGENVFSTPSMISEMEE
                     TCRLLLKEQFITDAEWDSVGTFVEIRHLAATPVGAEVLLKANVISVNGKRVMFDVEAF
                     DRIEKIGEGRHERFIIDIPKFRARFIAKQKELAIKNRV"
     gene            945..2618
                     /gene="thsB"
                     /locus_tag="VE223_06355"
     CDS             945..2618
                     /gene="thsB"
                     /locus_tag="VE223_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HZC21247.1"
                     /translation="MASVQTTAGGMPVLILKEGTKESKGKDAQKNNVTAAKLIAEIVK
                     TSLGPRGMDKMLVDSLGDVTITNDGATILKEIDVQHPAAKMMVEVAKSVDNEVGDGTT
                     SSVVFTGSLLARAEELISKDVHPSVIVDGYTAASEQALKILQKIAVKVDVNDKQQLQK
                     IARTSMDSKLVSDDSPTLSQIVVDATKQVSEKIGDNEGLKVDLDNIKVEKKAGGSMGD
                     TKLIKGIVLDKEVVHAGMPKRVEGARIALLNSALEIEKTEMSAEIRINDPQQMQMFLD
                     EENKMLRSMVDKVISAGANVVLCQKGIDDIAQHYFAKEGILVVRRVKESDMFKLSKAT
                     GARLVNNLDDLTDKDLGSAELVEERKVETDKWVFIEGCKNPKAVTVLIRGGSQRVVDE
                     ADRSVHDALMVTKDVLERPEIVAGGGSTEAYIANELKQWSGNLEGRAQLAVQKFAEAL
                     DSIPLGLAENAGMDPIDTMTELRAKQSKGSKWTGIDVRNTIVTDMFKQNVLEPVVVKE
                     QIIKSATEAASMLLRIDDVIASSKSKTPSPPPGGGGMGGMGGMGGMDME"
     gene            3012..3668
                     /locus_tag="VE223_06360"
     CDS             3012..3668
                     /locus_tag="VE223_06360"
                     /inference="COORDINATES: protein motif:HMM:NF014075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HZC21248.1"
                     /translation="MLSRMIKRKALDTKVLQKKIAGKPVMVIGSGPGLEKNIKFIKRS
                     TKFVKIVANGAVQALIERNIKPNIVVTDLDGNPSFLQKAEKMGSTMVVHAHGDNINRL
                     KKLVPKFRHLVGSTQVMPVQNVYNFGGFTDGDRCVFLAEEFGAREIILVGMELGDRLG
                     RYSKEGLVDIELKRKKMKAGKRLLEMLAKRSRSQLFDTSNKPIKGFTRFLINGSDELV
                     "
     gene            3846..4520
                     /locus_tag="VE223_06365"
     CDS             3846..4520
                     /locus_tag="VE223_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21249.1"
                     /translation="MSNYSEDDVRSAAEIREWLIKQISDKQDEVERLRIILSLIDSLL
                     KQSSFKTASSLGSSYGRTSIAQTSHTAKISPPLKEENLTIASNDIPETFSIENEQTDL
                     AEAIETRPLKRLKDNLLLANAEISPRTVEISPVEGINLNVNTPPFKSFFLNRILEGMK
                     TKDMEKINHSQIKESESLNYQVEEDSNGLIKRIVINNYRENERLAEIFNTSTWVFTRM
                     IEKIGR"
     gene            4529..6061
                     /gene="guaA"
                     /locus_tag="VE223_06370"
     CDS             4529..6061
                     /gene="guaA"
                     /locus_tag="VE223_06370"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HZC21250.1"
                     /translation="MDKIIVLDFGSQYSHLICRRIREGNVYCELLPYNTTSRIIKEID
                     PKGIILSGGPASVYLKDSPKPDPDIFKLGYPILGICYGHQLIVDFFGGRIKRATNREY
                     GRADLIIDDKSDLFSRIDNTIKCWMSHGDAAEKIPKGFKILAHTNNSFSAAIGNQERK
                     FYGIQFHPEVIHTDKGIEILKNFSQTISGAKPSWNMESFLEIAIENIRNEVRNDKVLC
                     AVSGGIDSTTVAALLHRAIDNNLQCVFVNHGLLRHDEEKLVTQLLKNRLGIEVVYVDA
                     EKQFFQRLKGVSDPEKKRKVIGEEFANVFVDVAKRNGPFQWLAQGTLYPDVIESGISK
                     GPAAIIKTHHNVGGLPKWLSLKVLEPLSSLYKDEVRKVAKLLHVPDEFLNRHPYPGPG
                     LAVRVIGEVTSIKLRIAKYASKIVEEELHAAGLYDKVWQAYAAVGDDRAVGVLGDERV
                     YGKIVIIRVIDSVDAMTADWTRLPYDVIEKISDRITNEVEGVTWVTYAVSSKPPATIE
                     PQ"
     gene            complement(6382..7500)
                     /locus_tag="VE223_06375"
     CDS             complement(6382..7500)
                     /locus_tag="VE223_06375"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HZC21251.1"
                     /translation="MPSRKHNIDDKIVNYLSRCQEIKSSISEKIQAYYSYMNSIVVMH
                     DFFLDRIIKLKSKEEFISALTEKTRFGGGSIRGVPTVDVKGGNAVNIAYCLAKLGVKI
                     TLFTISDNIGSSILKNTFSKFGGNADLRVTSGKHGLTTAFEFMNEKGFKSNVMVSDIG
                     DNGNFGPDRISSKDDLEILNNADAVVVVNWASNSSGTQLIEHVFKNSPKALHFIDPAD
                     IESRRQEFLDLLTNRGNIIDILSVNENECNSLSNAAGFGTPIPSNNYDSGEVKDAAAR
                     LAENIGVTVDLHTRIGAAWSNGKETIFANAIKVHTRTLTGAGDSWDAADIVGYLAGLD
                     TIERLVFSNAYASLYMRSPYAEPVTVDEVFEFLKTIDM"
     gene            7778..8398
                     /locus_tag="VE223_06380"
     CDS             7778..8398
                     /locus_tag="VE223_06380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21252.1"
                     /translation="MAFIPSDDKMFENNRNTAITTTAINVSITIGDVRVEFNGSADSV
                     LTSVISFISKQVPALDLARKISLNYAATDLIEIYANLIKITPEGPRVIPDLDELGQKK
                     ISDKEMVALQLIASKISKDIGKIADDSLQASEIQSNTSLNPKSVSSRLSELVKAGHVV
                     RATTKDGIGSGTVAYRITTSGIHWLNSVLAKRIKQPISSSTPSSPS"
     gene            complement(8393..8911)
                     /locus_tag="VE223_06385"
     CDS             complement(8393..8911)
                     /locus_tag="VE223_06385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21253.1"
                     /translation="MNESLAPPSNEVKIKLKHRDWEVEINCLESKVKTIVEDVLSGID
                     TSTATTQSLNSKIAEFQREINSLKLQINSGIYQSHKANSISAQRVDILRGGATTCRGI
                     LEKLWYEGYFETEKPLGEIHEEISRRGYNYDRTAVSHSLTDMVRESILTRIGTMRSYR
                     YAQKRPPSESPL"
     gene            9023..10057
                     /locus_tag="VE223_06390"
     CDS             9023..10057
                     /locus_tag="VE223_06390"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HZC21254.1"
                     /translation="MIAQLDLQTFGINLNEVECVFERSLNQCLSSKLKDALKGKKIMF
                     TRDEKNLFPIQGWGIRASTYCMTPITTIQPIVDNTTVSASDSSAIQIAETEEGSLYAV
                     KSGIAISIGGNALMHFKIGPVLFYLSEQTIRNSEIDHRLARVVLVDSHIAKRMIRMRV
                     ERAIQMKLCKHFDKSIILIDGSLKSSLFEDNNQNIKNIAENCSLQQNSIIGISKNTRF
                     KILDKISYPLTKIHCPAYLEVDLIIKSLVRNTIGDNLMVKFGNNNSPLLRADVVTPNY
                     NKDEALGKLLGNDSIAEGYPETLKLAHHISTFTSIEVSCLKGHVLSNYDVTELAPEDI
                     RKTLLGSISV"
     gene            10099..>11057
                     /locus_tag="VE223_06395"
     CDS             10099..>11057
                     /locus_tag="VE223_06395"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HZC21255.1"
                     /translation="MKTETASKGDYLIIEDEKAKRKMVVQIYDEEYLSSQSLIEDIVK
                     DEVVNASSTENLHDPLNISNLSKMIRDARVFRAKIRAAIDPSNKLSNDVSWLPSRVYS
                     SVGRLKISELDLLIQRRGLFPIPIGKAGVDNEDFEIYAEDLDGKLNIITGKKESGKSH
                     LSKLLVKRLVQYGAFVIVFDLNNEYGGLAWNNDGSPSSIQEQVIVLEPGNSLKFSLDY
                     CGKAAMSNMLKNALDMPAASLREFFRIWDWLENKQMLEIRALGNAITTSNINELVRDA
                     LISRYHVIQSSRLFLDSGNAEGLSFEKVISKKCKGTAIMISMG"
BASE COUNT         3718 a         1845 c         2231 g         3263 t
ORIGIN      
        1 gcccttggat ttttaattgt tgtattgatt ttaggcaact tggggcataa catagactac
       61 aatgaatttt ggagaggcac ttctattgca ttagcatttg atgatattct aatgcagcct
      121 atcattgcga tttgatttag tggggtcggc cggatttgaa ccggcggcct ccagcgcccg
      181 aggctggcat cataccatgc tagacaacga cccctgccta gttaaaatct tataatgtgc
      241 atgtatatga aatatttgta gcctattaca tgtaacaagc tgaaaatttc tgtgcaatag
      301 tatttgcaag cagcttaata cgctcataaa atactgactt ctatatcaaa ttcaagaaac
      361 aatcgataca aaaagatgta taagtctatc tattatcaaa gcaaagacta tgcctttcca
      421 gaagaaagtc taaaaggatc tttttatatt gaacatggga atataatatg aactctgttg
      481 ttaaagttgg tgccacaaaa gagaggaaaa ttaggatcga ttcaaatcaa tcaacaagtt
      541 ttctttggga aggtgagaat gtcttttcaa cgccttcaat gatctctgaa atggaagaaa
      601 cttgtcggct ccttcttaag gagcaattta taactgatgc agaatgggat tctgtgggaa
      661 catttgtgga aataaggcac ttggctgcaa cgcctgttgg agcagaagtg cttctcaaag
      721 ctaacgttat ttcagtaaat gggaaacggg ttatgtttga tgttgaggca tttgacagaa
      781 tagaaaagat tggagaggga aggcatgaac ggttcataat cgatatacct aagttcagag
      841 ctaggttcat tgcaaagcag aaagaattag cgataaaaaa tcgcgtgtaa aactataaaa
      901 gaggcataag aaaagatgta atattctact aggtgatatg tgaaatggca tcagttcaaa
      961 ctaccgctgg cggaatgcca gtattaattt taaaagaagg aactaaagaa agcaagggca
     1021 aggatgccca aaaaaacaat gttaccgctg ctaagttgat cgcagagatt gtaaagacta
     1081 gtcttggtcc acgtggtatg gataaaatgc tagttgacag tctaggtgac gttacaatta
     1141 caaatgatgg cgcaacaatt ttgaaagaaa ttgacgttca acatccagca gccaaaatga
     1201 tggtcgaagt agccaaatca gtagacaatg aagttggtga tggaacaaca tcttctgttg
     1261 tttttacagg ttcattgcta gcaagagctg aagagctaat cagcaaagac gtccatccat
     1321 cagtaattgt agatggctat acagctgcat ctgaacaagc acttaaaata ttgcaaaaga
     1381 ttgcagtcaa agtagacgta aatgataagc aacaattgca gaaaattgcc cgaacaagta
     1441 tggattctaa actagtttcc gacgatagcc cgactttaag ccaaatagtc gttgacgcta
     1501 caaaacaagt atctgaaaag atcggagata atgaaggttt gaaggtcgat ctagacaata
     1561 taaaagtcga aaagaaagca ggaggatcta tgggtgatac aaaattgatc aaaggtatcg
     1621 tacttgacaa ggaagttgtt catgcaggta tgccaaagag agttgaggga gctcgtatag
     1681 cattactaaa ttctgctctc gagatcgaga agaccgaaat gagtgctgaa atacgtatca
     1741 atgatcccca acagatgcaa atgtttctgg atgaggagaa caagatgctc aggtctatgg
     1801 ttgataaggt tatatcagca ggcgccaatg tagtattatg ccagaagggt attgatgaca
     1861 ttgcacagca ctattttgca aaagagggca tcctagtggt acgacgtgta aaagaaagtg
     1921 atatgttcaa attatcaaaa gcaactggag ccagactagt aaataatcta gatgatctaa
     1981 ctgataaaga tcttggttct gccgaattag tagaagaacg caaggtagag acagacaaat
     2041 gggtattcat tgaaggttgc aagaatccga aagcggttac tgttcttata agaggtggat
     2101 cacagagagt agtcgatgaa gctgatcgtt ctgtacatga cgccttgatg gtaacaaaag
     2161 atgtcctcga aaggcccgaa atagttgccg gaggtggatc tacagaagca tatattgcaa
     2221 atgaattgaa gcaatggtca ggtaacttag aggggagagc acaattggcg gttcaaaaat
     2281 ttgccgaagc acttgattct attccactgg gtctagcaga aaacgcaggt atggacccaa
     2341 tagatactat gacagaatta agagcaaagc agagcaaagg ttcaaaatgg actggtatag
     2401 atgttagaaa cacaatagtt actgacatgt tcaagcagaa cgtactggag ccagtagttg
     2461 taaaggaaca aattataaaa tctgctactg aggccgcttc tatgctactg cgaatagatg
     2521 atgtaatagc gtcaagcaaa tccaaaacac cttctcctcc cccaggtggt ggcggaatgg
     2581 gcggaatggg cggaatgggc ggaatggata tggagtaaat ctttaagtcc tacttcttcc
     2641 ttttttgaga aagtgcctac attaaattat atatgactaa tataactata acactgaaat
     2701 gcggttattt tatttgatgt tacattaata aatcctgctc cttgcgttgc actcatcaat
     2761 acaaatttgt gcattgattt acatgatttt ctttcaagcg tggtttgcca tagattgctt
     2821 gctctttgtt tacatttttc agtatggata tgcacagatt gtattttggt taatggtgag
     2881 cgacaaaaga acactctatt aggaatctct atctagctct aaaaatgaag ttcatagatt
     2941 ggttccccta ttatcaaagt atcaggttgc aatttggcta tagtacggag aaggaccagg
     3001 aagcagcaaa tatgctatct agaatgatca agagaaaagc cttagataca aaagtactgc
     3061 aaaagaaaat tgcaggaaag ccagtaatgg ttataggatc tggacctggt ttggaaaaga
     3121 acatcaaatt tataaaacgg agtaccaagt ttgtaaagat agttgcaaat ggtgcagtgc
     3181 aagctctaat tgagagaaac ataaaaccga atatcgttgt tacagacttg gacggtaatc
     3241 catctttttt acaaaaggca gagaaaatgg gatcaacgat ggttgtccac gcccatgggg
     3301 ataatattaa cagattgaag aaattggtgc caaaatttag gcatcttgtc ggttctacac
     3361 aggtgatgcc agttcagaat gtatataact ttggaggttt tactgatgga gatagatgtg
     3421 tttttttggc agaagaattt ggagccagag aaatcattct tgtaggaatg gaattaggtg
     3481 atcgccttgg gaggtattca aaagagggac tagtcgatat agagttaaaa aggaaaaaaa
     3541 tgaaagctgg taaacgcttg ttggaaatgc ttgcgaaacg gtctcgctcg caacttttcg
     3601 atacatctaa taagccaatt aaaggattca cccgctttct aatcaacggc agtgatgaac
     3661 tggtatgaga aacaagattg actaacaagt aagaatatac tgagtcaaat ttgattaaac
     3721 atagtgttaa ttaatacatg ttatcattcc actaaaacta tatgttttcc tcatcagaga
     3781 tagatgcttg ttatttacgt tctctgaaaa attattatat cattttatat aaagatggac
     3841 tacaaatgtc caactattca gaagatgatg tcagaagtgc tgctgaaata cgtgaatggc
     3901 ttatcaaaca aatttctgac aaacaagatg aagttgaaag attacgtatt attctttcgc
     3961 ttattgatag tcttttaaaa caaagtagct ttaaaaccgc ttctagtctt ggttcttcat
     4021 atggtcggac atcaatagct caaacttctc ataccgcaaa aatttcacct cctctaaaag
     4081 aggaaaactt gacgattgct agcaatgaca tcccagaaac tttttcaatt gagaatgaac
     4141 aaactgattt agcagaagct atagaaacta ggccattaaa acgactcaaa gataatttgt
     4201 tactagcaaa cgccgaaata tctccaagaa ctgtcgaaat ttctcccgtg gaaggaatca
     4261 atctaaatgt taatactcct cctttcaagt cgtttttctt aaataggatt ttggaaggaa
     4321 tgaaaacgaa ggacatggaa aaaataaacc atagtcaaat taaagaatca gaatcattaa
     4381 attatcaggt tgaagaagat agtaatggtt taattaaaag aatcgttata aataattaca
     4441 gagaaaatga aagactcgcc gagatattta atacatctac ttgggttttt acaagaatga
     4501 ttgagaaaat tggcagataa gtaatgatat ggacaaaata atagtcctgg attttggttc
     4561 tcagtatagc catttaatat gcagaaggat acgtgaagga aatgtatatt gtgaactttt
     4621 accatataat acaacatcca gaataattaa agaaatagac ccaaagggaa taattctctc
     4681 tgggggacct gcaagtgttt atttaaaaga ttcacctaaa cccgatccgg atatcttcaa
     4741 gctaggatac ccaattttag gaatttgtta tggtcatcaa ttaattgttg atttttttgg
     4801 gggcaggatc aagagagcta caaataggga atatggtcgt gctgatttga ttattgatga
     4861 taaatctgat ctgtttagtc gtattgacaa tacaataaaa tgttggatga gtcatggtga
     4921 tgctgcagag aagataccta aaggattcaa aatattagcc catacaaata attcgttctc
     4981 agctgcaata ggtaatcagg agagaaaatt ctatggtatt caatttcatc ccgaggtgat
     5041 tcacacagac aaagggattg agatcttgaa gaatttttct cagactatta gtggtgcaaa
     5101 gcctagctgg aatatggaaa gttttttaga aatagctata gaaaatattc gaaatgaggt
     5161 gcgaaatgat aaagttcttt gtgcagtaag tggagggatt gactctacta ctgttgcagc
     5221 gttattgcat agagctatag acaataattt acaatgtgtg tttgtcaatc acggtttatt
     5281 acgacatgat gaagaaaaat tagtaactca acttttgaaa aatcggctag gaattgaggt
     5341 agtttatgtt gatgcagaaa aacaattttt ccaaagatta aagggagtta gtgatcccga
     5401 aaagaaacgg aaggtaatag gtgaagagtt tgcaaatgtc tttgtggatg ttgcaaaaag
     5461 gaatggacca tttcagtggt tggcacaagg gactctttat cctgatgtga tcgaaagtgg
     5521 gatttcaaaa ggacctgcag caattattaa aacccaccat aatgttggtg gccttccaaa
     5581 atggctcagt ttaaaagtac tagaaccatt gagtagttta tacaaagatg aagttagaaa
     5641 ggtcgcaaaa ttgcttcatg tcccagatga attcttaaat agacatcctt atcctggtcc
     5701 cggtttagca gttagggtga ttggagaagt gacttcaata aaattacgta ttgctaaata
     5761 tgccagcaag atagtagaag aagaattaca tgctgctgga ttatatgaca aagtgtggca
     5821 agcatatgca gcagtaggag atgatagagc agtaggagtt ttgggtgacg agcgcgttta
     5881 tggcaagatt gtaataattc gggtcataga ttctgttgac gcaatgactg ccgattggac
     5941 caggttgcct tatgacgtaa ttgaaaaaat tagcgataga attacaaacg aggtagaagg
     6001 tgtgacatgg gttacatatg ctgtttcaag caaaccgcct gcaacaatag agccacaata
     6061 aaccaacatt cttcggcata ttaaaatata acacgctaga ggatttctct acctttgttt
     6121 tcaataccaa cctaatttaa tcttaaatct aaggtataga aacaaaagat aacgcaaaag
     6181 tatatagatt ttacttttag ttatctttct tattctcatt agcctgtatt ttagaaacga
     6241 cacgctttac tgtatctgat atactgacga ttgtattaac tgatctataa aaactacctt
     6301 tgtccaaaca actaagtggt agtttcaatc agtatgcaaa aatatcaatt gctagtagta
     6361 ttggttaaat aagctattta attacatatc gattgtcttc aagaactcaa agacttcatc
     6421 aacagttact ggctctgcat aaggacttct catataaagt gaggcatatg cattagagaa
     6481 tactaacctc tctatcgtat ctaatccagc taaatatcct acaatgtctg cagcatccca
     6541 agaatcacca gcaccagtca aggttcttgt atgaactttg attgcattag caaatatagt
     6601 ttctttacca tttgaccatg ctgcacctat tctcgtatgc aaatcaacag tgactccgat
     6661 gttctctgct agtctagcag cggcatcttt cacctctcct gagtcataat tatttgatgg
     6721 tatgggagta ccaaagccgg cagcattaga aagagaattg cattcatttt cattcacact
     6781 cagaatatcg ataatattgc ctctattagt taataaatct agaaattctt gtcttctgct
     6841 ttcgatatct gcaggatcaa taaagtgaag agcctttgga gagtttttaa aaacgtgttc
     6901 aattagttga gttccacttg aattactagc ccaattcaca acaactactg cgtcagcatt
     6961 atttaaaatt tctaggtcat ctttggaact aattctatca ggaccaaaat ttccattatc
     7021 tccaatgtcg ctgaccatta catttgattt aaaacctttt tcgttcataa attcaaatgc
     7081 tgtagtaaga ccatgtttgc cacttgtaac gcggagatct gcattacctc caaatttaga
     7141 aaatgtgttt ttaagtatag aagagccaat gttatctgaa atcgtaaaaa gagtgatctt
     7201 tacgcccagt tttgcaagac aatacgcaat atttactgca ttgcctcctt tgacgtcaac
     7261 ggtaggaacg ccgcgtatac taccgccacc gaacctcgtc ttttcagtta atgcactaat
     7321 aaattcttcc tttgatttta attttataat ccgatcaaga aagaaatcat gcattacaac
     7381 aatagagttc atgtaagaat agtaagcttg aattttttct gaaattgaag atttaatttc
     7441 ctgacacctg gatagataat ttacgatttt atcatctata ttgtgtttgc ggcttggcat
     7501 aaatttagta cgtcctcgaa taaacccatt tatattagtg aaccttctat tcgaaaagct
     7561 gttaattatt taataacgta aatatatagt tataaaggag tttatgaaag gctgcctata
     7621 taatatgttg atctttaaga ccatctttgt ggtcgaaaca tgtaaagttt tggctcgaga
     7681 ggatttctct acatttatct gtcatgttac tttaaaagaa caatgtgtat ataccttaaa
     7741 cacctttgta gttgggttac tggagaagta gtagttaatg gccttcatcc catcggatga
     7801 taaaatgttt gaaaataata gaaatactgc tatcactacc accgctatta atgtctcaat
     7861 aacgattgga gatgtaagag tggagtttaa tggctctgca gattcagtcc tgacatcagt
     7921 tatctccttt atatctaaac aggttccggc attagatctg gcaagaaaga tctctctaaa
     7981 ttatgcggct actgacctta ttgaaatata tgcaaatcta attaaaatta ctccagaagg
     8041 tcctagggta ataccagatt tagatgaatt aggacagaaa aaaatatctg ataaagaaat
     8101 ggttgcactg caattgatag catcaaaaat ttcaaaagat atcggcaaga ttgcagatga
     8161 ttctttgcaa gcatctgaaa ttcaatctaa tacgtctctt aacccaaaat cagttagctc
     8221 taggctatcg gagttggtaa aggctggaca tgtagtgaga gcaactacaa aagatggaat
     8281 tgggtctgga actgtagctt atagaatcac cacatctggt atccactggt taaactctgt
     8341 tctagctaaa agaataaagc aaccaatatc gtcctcaaca ccatcatcgc catcataatg
     8401 gtgattcaga aggtggtctc ttctgagcat acctatagct tctcattgtt ccaatcctgg
     8461 ttagaatgct ttctctgacc atgtctgtaa gtgaatgtga cacagcagtc ctatcgtaat
     8521 tgtacccgcg ccttgatatc tcttcatgaa tttcccctag tggcttttct gtttcaaagt
     8581 acccctcgta ccatagtttt tcaagtattc ctctacaggt cgttgctcct cctctcagta
     8641 tatctacacg ttgtgccgat atcgaatttg ccttatgtga ttggtatata ccagaattaa
     8701 tttggagttt taaggagtta atttctcttt gaaactcagc aatctttgaa ttcaaacttt
     8761 gggtagtagc tgtagatgta tcgataccag aaagaacatc ttctactatt gttttaacct
     8821 tgctttcaag acagtttatt tcaacctccc agtcgcggtg ttttaattta atcttgactt
     8881 cgtttgaggg gggcgctaac gattcgttca taaaggagta tatacggttg ataaatttgc
     8941 cgccagataa acttgttgct gagcatattg aacaagttgc acaacattaa taagcaggat
     9001 ttaaattata ttgttgatca acatgattgc acagttagac cttcaaacat tcggaattaa
     9061 tctgaatgaa gttgaatgtg tatttgaacg atcattgaac caatgtctat cgtcaaagct
     9121 aaaggatgcg cttaaaggga aaaagatcat gtttactaga gatgaaaaaa atctttttcc
     9181 aatacaaggt tggggaatca gggcaagcac ttattgtatg actcctataa caaccattca
     9241 accaatcgta gataatacaa cggtatctgc aagtgattct agcgcaatcc aaattgctga
     9301 aacggaagag ggttcacttt atgctgtgaa gagtggaatt gcaatttcta tcggtggtaa
     9361 tgccctaatg catttcaaaa ttggtcccgt tttgttttac ttaagcgagc aaactattag
     9421 aaattctgaa attgatcata ggttagcgag ggttgtatta gtggatagcc atattgcaaa
     9481 acgaatgatc cgaatgcgcg tcgagagagc aattcaaatg aaactttgca aacacttcga
     9541 taaatcaata atccttatcg atggatcatt gaagtcatct ttgtttgagg acaataatca
     9601 aaacattaaa aacatagcag aaaattgttc cctccaacaa aattctataa ttggaatcag
     9661 caaaaatact agatttaaga tcctagacaa gatctcatat cctcttacaa aaatccactg
     9721 ccctgcatat ctcgaagttg acttgattat caaaagccta gttcgaaata ctataggtga
     9781 taacctgatg gtaaagtttg gcaataacaa tagcccttta ttgcgagcag atgttgttac
     9841 tcctaattat aataaagatg aagcgcttgg gaaattactt ggaaacgact caattgccga
     9901 aggatatcct gaaacattga agcttgcaca ccacatttcg accttcacta gcatagaggt
     9961 gtcatgtctt aaaggtcatg tgttaagcaa ttatgatgtt acagagcttg cccctgaaga
    10021 tattcggaaa actttgcttg gttcaatctc agtatgaaga tcttatcaaa aactggcaat
    10081 gaattggtca tgttagcaat gaaaacagag acagccagca aaggtgacta tttgataatt
    10141 gaagatgaaa aagcaaaaag aaagatggtt gttcagatat acgatgagga gtatctttct
    10201 tcccaatctt tgatcgaaga tattgtaaag gacgaagtag tgaatgcttc aagtacagaa
    10261 aatctacatg atccgctcaa tattagcaac ctttccaaga tgataagaga tgctagagta
    10321 tttcgagcta aaataagggc cgccatagat ccatcaaata aattatcgaa tgatgtctca
    10381 tggttgccat caagagtgta ttctagcgtg ggacgattaa agatttctga gctagatttg
    10441 ttaatccaaa gaagagggct ttttcccatt ccaataggaa aagctggagt agataacgaa
    10501 gattttgaaa tctacgctga ggatcttgat ggtaaattaa acatcattac tggaaaaaaa
    10561 gagtccggca agtcccacct ttccaagctc ctcgtgaaaa ggctagtaca atatggagca
    10621 tttgttattg tgttcgattt gaacaatgaa tatggtggtt tagcatggaa taacgatggc
    10681 tctccatctt caattcagga acaagtcata gtgcttgagc caggaaacag tttaaaattt
    10741 tctcttgatt actgcggcaa ggctgccatg tcgaatatgc tcaaaaatgc acttgacatg
    10801 ccggctgcct cattacgcga attctttaga atctgggatt ggcttgagaa caaacaaatg
    10861 ctagagatca gagctttggg taatgcaatc actacatcaa atattaatga acttgtacga
    10921 gatgctctta tttcaagata tcatgtgatc caatcatcac gcttattttt agacagtggc
    10981 aatgctgaag gtttgagttt tgaaaaggta atctcaaaaa agtgcaaagg tactgcaata
    11041 atgattagta tgggtaa
//
LOCUS       DASQSJ010000323         2281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_256810, whole genome shotgun sequence.
ACCESSION   DASQSJ010000323 DASQSJ010000000
VERSION     DASQSJ010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256810"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..1565)
                     /locus_tag="VE223_06400"
     CDS             complement(57..1565)
                     /locus_tag="VE223_06400"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HZC21256.1"
                     /translation="MKKSFSLSVFIFLIVTMMLSFSIDHHGLSLLDIQKANAFRSRES
                     RHPSVQLSNLLPLPTITGSDTRVSEPTPSPLQQQPSNIGNNDNANPLIQPDSIKGAIS
                     DEKISKQYIVVLKPSVSVKAESVAAEVKSKGADTIHIYNHAIKGFAIRVPNENALTSI
                     QNNPAVEFVEPDQKVTAFGGGQLLPSGIVRVNGDVLPTGVARVDGELSSAKSGSGADT
                     VVNAGIAIIDTGIDLTHPDLNVYKNTTFVPGTTTGNDDNGHGTHVAGIAAAKNNNIGV
                     VGVAPGARLWAVKVLDSTGSGDISNIIAGIDYVTQHANEIGVANLSFGCECHSNALDT
                     AIHNSVTAGITYVVAAGNSASNAIDFSPANNPDVIAVSAIVDTDGKCGGLGPSTPFGN
                     DDTFARFSNYGPVVAMAAPGVNITSTYKDGLYATLSGTSMAAPHVTGAAALYKAAHIG
                     ASPSIVKQALMSSGSTPSTVCDGKGYGYFSGEPGNTHEPLLDVRNLLDVRNY"
     gene            complement(1724..2002)
                     /locus_tag="VE223_06405"
     CDS             complement(1724..2002)
                     /locus_tag="VE223_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21257.1"
                     /translation="MNFFLTSIKNVNGYPKVRDLRKLLSPRLDLVKINAILRYLEKSK
                     RLEIDLDGNIVWIREESFNHLLSFAESANISQEFLEHFSKDTDTDDVS"
BASE COUNT          681 a          433 c          400 g          767 t
ORIGIN      
        1 aagagttatt ctccgaaaga tggtagagga tgggtgtctg attggtacat aagcatttag
       61 taatttctta catccagtaa atttcttaca tccagtaacg gttcatgtgt attacctggc
      121 tctccactaa aatatccgta acccttgccg tcacacactg ttgatggtgt agaacctgag
      181 ctcatgagag cttgcttaac tattgacggt gatgctccta tatgagcagc cttgtataaa
      241 gcagccgcac cagtcacatg aggagctgcc atactggtac cacttaatgt tgcatacaaa
      301 ccatctttat atgtagaggt aatatttact cctggagcag ccatagctac gacaggacca
      361 taattgctaa atctggcaaa agtatcatca tttccaaatg gtgtagaagg accaagacct
      421 ccgcatttac catcagtatc tacaatagct gaaactgcaa ttacatcagg attattagct
      481 ggcgaaaaat caattgcatt tgaagcgcta tttccagctg ctacaacata agttattcca
      541 gctgtaacag agttatgtat ggcagtatct aatgcatttg aatggcattc gcatccaaaa
      601 cttaaattcg caacacctat ttcatttgca tgttgagtta cataatctat tccggcaatg
      661 atgttggaaa tatctccaga tccagtacta tcaagaactt tgacagccca tagtcttgca
      721 ccaggagcta ctccaactac acctatatta ttatttttgg cagctgcaat tcctgctaca
      781 tgagtaccat gaccattatc atcgtttccg gttgttgtac ctggaacaaa agttgtattt
      841 ttatatacat taagatcagg atgtgttaaa tcaataccag tatctataat ggctatacct
      901 gcatttacaa cagtgtcagc tccacttcca gatttggcag agctaagctc tccatccact
      961 ctagcaacgc cagttggcag aacgtctcca tttaccctaa caattccaga tggtaacaat
     1021 tgtcctcctc caaacgctgt cactttttga tctggttcta caaactccac tgcaggatta
     1081 ttttgaatgg aagtaagtgc attttcattt ggaaccctta tagcaaatcc tttaattgcg
     1141 tgattataaa tgtggatagt atctgcacct ttgcttttaa cttcagctgc cactgattct
     1201 gcctttacag atacacttgg tttgagaact actatatatt gttttgatat tttctcatcg
     1261 gatattgctc cttttattga atcgggctgt attaatggat tagcattatc attattacca
     1321 atgtttgatg gctgttgttg taggggcgat ggtgttggtt cactcaccct agtatctgat
     1381 cctgtaattg ttggtagagg tagcaaattt gataattgta ctgatgggtg cctgctttcc
     1441 ctagatctaa acgcgtttgc tttttgaata tccaacaatg acaatccgtg atgatctatg
     1501 gagaaggata gcatcattgt tacaattaag aagataaata ctgaaagaga aaatgatttt
     1561 ttcattcatc tgataacaaa tggtaatcat atatgggatg ccaaagtatt atatcataaa
     1621 tacatatcta catttatact atattataca gtacttgtgc taacagaagt ttataaagct
     1681 accaccgatt cagtatggaa caggctaaac tcaagatgtg tagctaagat acatcatctg
     1741 tgtctgtatc tttagaaaaa tgttcaagaa attcttgcga tatattggct gattcagcaa
     1801 agctaagaag atgattaaag ctttcctcac gaatccagac gatatttcca tctaaatcaa
     1861 tttctaacct ttttgatttt tctaaatatc tgagtatcgc gtttatctta actagatcta
     1921 atcttggact aagtaatttt cgtaaatctc ttacctttgg atatccattt acatttttta
     1981 tacttgttag gaaaaagttc aagtcgcctt ctgttatttc atttacaggt ctcggtttct
     2041 tttttgtaaa tttcttggat ttgataaaaa gttatgacgt ctatatcatt ttaaacctta
     2101 tgcttcaact agtggatacg acaatatgga aataaatact actgtctatt cattcatcca
     2161 tatgttactc gaactcagaa gggtggaatt tgaactctta agccataaat tgaattctta
     2221 ttgtatgatg agaattcgat aataaagtgc ggcattggca ttagcgattg agtggatata
     2281 t
//
LOCUS       DASQSJ010000324         2415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_236858, whole genome shotgun sequence.
ACCESSION   DASQSJ010000324 DASQSJ010000000
VERSION     DASQSJ010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236858"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VE223_06410"
     CDS             complement(<1..254)
                     /locus_tag="VE223_06410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21258.1"
                     /translation="MTQTTTTSNKLGIDWNNVIKKEARGNEDDDLGEVQEVGETYVLT
                     QKGFANKKRFYLPKYLVKGYDGHNLIFGLSKEQAKNRFMR"
     gene            complement(912..1397)
                     /locus_tag="VE223_06415"
     CDS             complement(912..1397)
                     /locus_tag="VE223_06415"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HZC21259.1"
                     /translation="MRKEERADDVSIYKLMTHKRFEFFGILIVSVVAVMSIATTPIFS
                     NKIGGIISNYAQAQKEVKVSIVPGASTLADKAFSPNPVNIKVGDTVTWVNDDTVFHTV
                     VSGNPSGGGETGKVFDSGLSGPTALTTKGKTFSHTFTEKGEFPYFCQLHPTMIGKVIV
                     S"
     gene            complement(1394..1741)
                     /locus_tag="VE223_06420"
     CDS             complement(1394..1741)
                     /locus_tag="VE223_06420"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HZC21260.1"
                     /translation="MSKLYHENEFERKRSEDYYAGYYWGNNPYDSNELAGRINDAELK
                     NRILKHLEKNGMMSSDIMLHVKDGMVILIGYVNTYEQRRSVGQEVWNIPGVVKVLNDL
                     QVTDPETAGPSKV"
     gene            complement(2121..2315)
                     /locus_tag="VE223_06425"
     CDS             complement(2121..2315)
                     /locus_tag="VE223_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21261.1"
                     /translation="MNSSSSVDSPSSSVDSSSLEMADTQDDDALQCRVCGRQFDDMAQ
                     MQRHMLTEHIQRGDLPNEEH"
BASE COUNT          735 a          456 c          402 g          822 t
ORIGIN      
        1 tctctcataa atctattttt cgcttgttct tttgatagtc caaaaattaa attatgtcca
       61 tcatagcctt ttactaaata ttttggaaga tagaatctct ttttatttgc aaatcctttc
      121 tgtgttaata cataggtttc gcctacttcc tgcacttcgc ctaaatcatc atcttcatta
      181 cctcttgctt ctttctttat tacattattc cagtctatac caagtttgtt actagttgta
      241 gttgtttgag tcatactatt ttctagctca aagataaata aaaaatagga gcatcctaat
      301 gcaagcaatt gaaatcatct gcaacggtca gtatatattg tagaataata gagttacagt
      361 tgacggtgag tccataggaa ttttgccagc agtttttgag ctttgtcaaa agtcgctatg
      421 tattaggata taaaatgtgt ctgattagat ataacatgta atctagtatc ttatcatata
      481 atgactatca ttttccttgt agaaaaaata agtgtaggtt acaacacata gttaattggt
      541 ctagcggata taacagcgaa tggcaagcca aagtggaaaa atgtacctat tgaagtatac
      601 atcataggcg gtaatatagt aaatattcgt ataaactcag agaaaacaga caatcatttt
      661 agggattttc ctgtgtatgg aatagtgaca tctatagtca aaccaattag gataatatcg
      721 gcgcctggta gcaataacca atagcacgag tcctctaacg ttgctatact tcataattgc
      781 tcttaactga ccttcttcta gctaagaaga tgatcttaaa tgaaaagata taagatctgg
      841 tctgctgcta cttaagcaaa acagaaacaa agaaaaatat gtcgaatttc tattcaggat
      901 ttatctttat atcatgatac aattaccttt cctatcatcg tagggtgtaa ctgacagaag
      961 taaggaaatt ctcccttttc tgtaaatgta tgggaaaaag ttttaccctt tgtagtcaac
     1021 gcagtaggtc cggataatcc tgaatcaaag acctttccag tttctccacc accgcttgga
     1081 ttacctgata ctactgtatg aaatacagta tcatcattta cccatgttac agtatctccg
     1141 acctttatat tgacagggtt aggagagaat gctttgtcag ccaatgtaga agcacctggc
     1201 actatagaca ctttgacttc tttctgagct tgagcatagt tactgataat accgcctatt
     1261 ttgtttgaaa atatgggtgt cgttgctata gacatcacag ctactacaga tactattaaa
     1321 atcccaaaaa actcaaatct cttatgagtc attaatttgt agatactcac gtcgtctgct
     1381 ctctcctctt ttctcaaacc ttacttggac cagctgtttc tggatcggta acctgcagat
     1441 catttaacac cttgacaacc cctggaatat tccagacttc ttgacctact gaccgtcttt
     1501 gttcgtacgt gttgacatag ccaattagga taaccatacc atcttttaca tgaagcatta
     1561 tatcggagct catcatacca tttttctcca agtgctttag tatcctattt tttagctccg
     1621 catcatttat gcgtccagca agctcattgg aatcataagg attattgccc caatagtatc
     1681 ctgcataata gtcttctgac ctcttccttt caaattcgtt ttcatgataa agctttgaca
     1741 taatacaata tacgtgaaac tattagataa atctaacgat taaatatatt tatcatatgg
     1801 atttaatgtg gaagagaact tccaactata ttatcattgt tctactatag aggaccacac
     1861 cattctatat ttgaattctt ttataccagt gagtcctaga acagaaggcc gccggcgtaa
     1921 ctcctactga tcttattgcc agtctatcgt gtgaacatga taaaaaacat gcgataatag
     1981 ttaacaactt tttagaggtt aagggatatc aaggacaggt ttacgcactt ggtgattgtg
     2041 cgtctataac agactattca cattcatgta aaaggaaaac aatgagtagt ggtacaatgg
     2101 ccttctattt tatcgttgtt ctaatgttct tcatttggaa gatcccctct ttgtatatgc
     2161 tctgttagca tatgcctttg catttgagcc atatcgtcaa attgtcgccc gcatacacga
     2221 cattgtaaag catcatcatc ttgtgtatct gccatttcta aagaggagga atccacagac
     2281 gacgagggag aatccacgga tgaggaagag ttcattttat tttgcctatt tttgaattgg
     2341 taattatcga tattaactgt ttatggtatt ctggtatttg atattgttct agtctgcatt
     2401 ttctataagg cataa
//
LOCUS       DASQSJ010000325        10159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_38098, whole genome shotgun sequence.
ACCESSION   DASQSJ010000325 DASQSJ010000000
VERSION     DASQSJ010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10159
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38098"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            264..500
                     /locus_tag="VE223_06430"
     CDS             264..500
                     /locus_tag="VE223_06430"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF003089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit N"
                     /protein_id="HZC21262.1"
                     /translation="MLIPVRCFTCGNLIASKHTEFSNRVKAGEDPAKVMDSLNMKRYC
                     CRRMFTSSVETIYQVIPYYEALRRRMSEIQSDIE"
     gene            509..1765
                     /locus_tag="VE223_06435"
     CDS             509..1765
                     /locus_tag="VE223_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HZC21263.1"
                     /translation="MPSITAIKGRIVYNSRGSKTIEIDVITDKKFFGRASAPSGASVG
                     KQEAQSFPDDNPKKALELFTTNSKKFIGLDPADPKIIFDVLRSIDNTETYTKIGGAIA
                     YALSIAAIDSAAKSLDVPIFKLLKPRKPYKFPFPLGNILGGGAHAGPGTPDIQEFLVC
                     PIGAQSIIEALETNFELHKELGKVIESIDKRFTYGRGDEGAWAPNVNNDQALELMDKA
                     IKNCGFSLGKEISLGIDLASSSLWNEKKKEYEYVRQGIKRNTQEQIDFANDLIKKYNL
                     IYLEDPVHEEDFESMAAITKRNPKCLVTGDDMLVTNTGRVKEVARSKSCSGAILKVNQ
                     TGTLYDSMKFADACTINNIKIITSHRSGESSDTHIAHIAIATDSKMLKSGVIGGERIA
                     KLNELLRLREYDLIEGMADLSSAYHE"
     gene            1758..2486
                     /gene="rpsB"
                     /locus_tag="VE223_06440"
     CDS             1758..2486
                     /gene="rpsB"
                     /locus_tag="VE223_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HZC21264.1"
                     /translation="MSEDKGVQDADLDAINEDEPNNGTSNEESSSAEMQEGDSVLESN
                     NLEKMILSTGIRVGTPVKTKYMTPFIVRANPEGLYILDISKTLAKIDVAAKFIGRANI
                     SKVAVTSAREYGKTPVEKFCELTGAMSIFGRFMPGTFTNPSLPKYMEPEIVIVTDPQA
                     DQQAVLEATRAGVPVIAIANSDNVTSRVDLVIPANNRGRKALATVYWLLAREVLKKQG
                     TIKSDSEMRTSIDEFETKLVEEIS"
     gene            2483..3331
                     /locus_tag="VE223_06445"
     CDS             2483..3331
                     /locus_tag="VE223_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEMO1 family protein"
                     /protein_id="HZC21265.1"
                     /translation="MNNSPKRTSVVAGIFYPSEPLELKQLIEQSFRDQNFGPGRMPPS
                     GSKRRIYGIVSPHAGYVYSGAVAANGYYEISSIDFDNIVMIGPNHYGIGAGVAIMHKG
                     IWETPLGQIEINPSLASEISKYSGIVDFDDFAHSRDHCLEVQIPFLQYIKRNEFKIVP
                     IVLILQDQETAINIGKSIAQTTADSKTLLIASSDFTHYESNSEAYRKDGELIKAILSL
                     DISKFYSVLERFDVSACGYGAIASTMKAVKDLGATKGELLKYATSGNVTGDMNAVVGY
                     SSIIFV"
     gene            3334..4311
                     /gene="mvk"
                     /locus_tag="VE223_06450"
     CDS             3334..4311
                     /gene="mvk"
                     /locus_tag="VE223_06450"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HZC21266.1"
                     /translation="MRKTSAKASAPAKIILFGEHFVVYGSHAIMAAINRRIHVAVFLN
                     KTQTINITSNLGIIGSYTESKFNLIKGGKNTKEILDPIYKSAVDVLSERKQNLGIDIN
                     VVSEVPHGVGLGSSAACCVATVAAVDALFHKPDKLWVCSKAIESERIVHKDSSGGDCY
                     ISTFGGLIYYSKIKGFKTIETTRDLSLIIVNTGIKHRTGDLVSSVKKFKNDNRSLFRD
                     LSSYADNICQDALTAINIGDEKKLGKLMNENHTLLQQIRVSHKIYDQILKICFKNGAL
                     GVKLTGAGGGGSMIVLTLKEDKIKLTSEIERNSYECIPAKIDYNGLVVY"
     gene            4348..5121
                     /locus_tag="VE223_06455"
     CDS             4348..5121
                     /locus_tag="VE223_06455"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HZC21267.1"
                     /translation="MVRNLILIKLGGSVITFKEKPLTANFEAINNISRILASLKIPLI
                     IVHGGGSFGHHLSIKYNMHTRPDQYDPHGISVVHESMITLNQVIVNSMIKVGMNPYAI
                     MPSNFTFAHKPIAKKIKELQSIAEDSIIPITFGDIVHIKNRTYSIISGDALMSILSKT
                     LRPSKVIFTLNVDGIYKDMNEKEVLKELDNINDSINFSKVVQDVTGGMRRKVTEALKI
                     CGSGMDVFMINGLKPERIANAITDTEFEGTVLKGLRSSK"
     gene            5123..6214
                     /gene="fni"
                     /locus_tag="VE223_06460"
     CDS             5123..6214
                     /gene="fni"
                     /locus_tag="VE223_06460"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HZC21268.1"
                     /translation="MIDTFSSPSDIEIIKQRKKEGIDIPLKQNVQAKTTSNYLEYVKF
                     IHNALPELNYDDINTSTTFMKHKFSAPVIIDSMTGGTPEAININGRLAELAEKYEFAM
                     GLGSQRAGLESRELAETYSVARKNAPTAFLMANIGGAQLGKGLTVDSIKEIIKMIQAN
                     ALIVHLNPLQELVQPEGEPNYKGVLEKISELVEKLDVPIIVKEVGAGISKEVAIKLEM
                     AGISSINIAGAGGTSWAAVEKLRAETANDDLKIHLGEMFWDWGIPTALSLIEVKKAVK
                     LPLIASGGLRNGLEVAKCIALGAGMCAMAYPFLIKAAESKESLFKFTDIILAELRSTM
                     FLLGAENIPALESSRYILTGDLAERVKCG"
     gene            6211..7218
                     /locus_tag="VE223_06465"
     CDS             6211..7218
                     /locus_tag="VE223_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HZC21269.1"
                     /translation="MKTSSIRDELESNASDIKEFILSILEGEPKQLYQASAHYIISGG
                     KRLRPFMVVKSCEMFGGSSKRALPAAAAVEMVHNFSLVHDDIMDNDDMRHSVPTVHKY
                     YGTPLAILAGDILFSKAFQLLAVNGREVGLAEKAISEMITKLSTACIYVCEGQAADVN
                     MASNRILSHESQYINMIGKKTAALFEVSCALGVLSSIDPSIQDVANLSSFGRNVGIAF
                     QLIDDLIGITGDPKITGKAVGNDIREGKNTYPILLALNYAKGENKDKILKVFRSKDAS
                     SIDLEEAAKTISAIGIDQHVRDAAKSHVYKAIKSIENYDDSDAKKALESSANFIVERS
                     M"
     gene            7220..8953
                     /gene="gltX"
                     /locus_tag="VE223_06470"
     CDS             7220..8953
                     /gene="gltX"
                     /locus_tag="VE223_06470"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HZC21270.1"
                     /translation="MAFNEDTEKIIKITVLKNALEYKGKSRVDTVIARVIGSRPDLRS
                     NLRNLIPKITETVQKINSLSLADQKALLEQAAPGESQKKKIAESSQAPLPPLQGAEIG
                     SVVTRFPPEPSGYPHIGHAKAAIIDEEYAHMYNGKFILRFDDTNPLNEKLEYYEAISE
                     GLEWLGIRPDIVKNSSDDIQLLHEYGKKLILSGGAYVCTCNQKTIHDLRARGLPCDCR
                     KDFSVALDRLKKMFDGSFEHNAAVIRFKGDMSDQNTAMRDPTLFRIIDGEHPKIGYKI
                     RLWPTYDFAAPVEDSIDGVTHAMRTKEYELRNALYFAILDRLGLRKPLLIEFSRLEFN
                     GVPVSKRKIKPLIEKGIVKSWSDPRLPTLMGIKRKGFLPEAIRKFVLSLGLTLAETKP
                     PVETLEAFNRKIIDSHCMRLFFVKDPVELKIQNASSKEITLKNHPNNDLGTRKVAVSN
                     SFYISAEDAAKLNINDEIRLMDLCNIKIIKFEPNHTRKALIAAAIPENIKQGIPKIQW
                     VAKSDAIPYKVMITRELYLGEKYNPNSLEICEGYAESFVSILKIDTRIQFVRFGFCRI
                     DDSNTAIFTHR"
     gene            8964..9833
                     /locus_tag="VE223_06475"
     CDS             8964..9833
                     /locus_tag="VE223_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HZC21271.1"
                     /translation="MKIARIKNTKEGDTYAVISDDGKRLITKSEIQEQTGIPIPSNIK
                     EFMFKGWLDEIKEHQNKLMYNHKVEDIELLAPISNPPKIICLAFNYYDHARDAGLTPS
                     DEPVIFMKPRTTLNSPFNDIICPSFVKRLDYEAEIAVIIGEDTKKVSENQALETVFGY
                     MILHDVSSRDIQFKDKQYTRAKSIDTFAPCGPWITTKEEVGDPQNLKIVTKVNGETRQ
                     NSSSINMVLPIKRIISSLSMVMTIEAGDIISTGTPAGVAMSMKEPKYLKDGDIVEITI
                     EKLGMIRNRIVFQ"
BASE COUNT         3549 a         1748 c         2055 g         2807 t
ORIGIN      
        1 atttgaaccc acgaacccct gagggataag agcctcagtc ttacgccttt ggccaagctg
       61 ggcgactccc gcttcgctga tgagtgcttc catagcagta atttgaatat tatggaagac
      121 gaggatctac actccctgta aaaacaccta agcaaataac attacatcat tttgctcgat
      181 tattcatcac tacaaatgag ccaatagcag aagtttataa tcgtaatagt ttttataggg
      241 actgtaaatc tttctaaagc agaatgttaa taccagtacg atgcttcacg tgcggaaact
      301 taattgcaag taagcataca gagttttcaa acagagtaaa agctggcgag gatccagcaa
      361 aggtaatgga ttcgttaaat atgaagcgct attgctgtag gagaatgttt acctcaagcg
      421 tggagaccat ataccaagta attccttatt atgaagcttt aaggcgaaga atgtctgaaa
      481 tccagtcaga catagaataa gaaaatagat gccttcaatt acggctatca aaggcagaat
      541 tgtttataac agcagaggaa gcaaaaccat agagatagat gtcatcaccg ataaaaagtt
      601 ctttggcaga gcctctgcac catctggcgc aagtgtagga aagcaggaag ctcagagttt
      661 tcctgatgat aatccaaaaa aagcactaga attattcacc acaaattcca aaaaattcat
      721 aggactagac ccagcggatc caaagataat ttttgatgtg ttaagatcta ttgataacac
      781 tgaaacgtac accaaaattg gtggcgccat tgcttatgcc ttgagcattg cagctattga
      841 ttctgcagcg aagtcattag atgtccctat cttcaaatta ttaaaaccaa gaaaacctta
      901 taaatttcca ttccctctcg ggaatatttt aggtggcggc gctcatgcag gaccgggcac
      961 tccagacata caagaatttc tggtctgccc tatcggagct caaagtatca tagaagcatt
     1021 ggaaacaaat tttgaattgc ataaagaact tggcaaagtt attgaatcta ttgataaacg
     1081 cttcacatac ggtcgaggag acgagggcgc atgggctccg aatgtaaata atgatcaggc
     1141 attagaactt atggacaaag ccattaaaaa ttgtggtttt tcgctaggta aagaaatatc
     1201 gctaggaatt gatttggcaa gctcttccct ttggaatgaa aagaagaagg agtacgagta
     1261 tgttagacag ggaataaaac ggaacaccca agagcaaatt gattttgcca acgatctaat
     1321 taaaaaatat aatcttatct atctagaaga tccagtccac gaggaggact ttgaaagtat
     1381 ggccgctata accaaaagga atccaaaatg cctagttact ggtgatgata tgctagtcac
     1441 caatacaggc agagtcaaag aagtagcaag gtcaaaatca tgcagcggtg caattttgaa
     1501 ggtcaaccaa acaggaactc tttatgattc catgaaattt gctgatgcgt gtaccataaa
     1561 caatatcaaa attataacat cacatagatc aggcgaatct tctgacacac atatagcgca
     1621 tattgcaatt gctactgatt ctaaaatgtt aaaatcagga gtcattggtg gtgagcgcat
     1681 agcgaagtta aacgaacttt tacgtcttag agagtatgat ttaatagaag gcatggctga
     1741 tctgtcctct gcgtatcatg agtgaagata aaggggttca agatgcagat ttggatgcta
     1801 taaacgaaga tgaacccaat aacggtacat caaatgagga gtcgtcttct gcagaaatgc
     1861 aagaaggcga cagtgtgtta gagagtaaca atttagaaaa aatgatactt tctactggta
     1921 ttcgtgtggg tactccagtc aaaacaaaat atatgacacc atttattgtc agagctaatc
     1981 cggaaggttt atacattctt gatattagta aaaccttagc aaaaatcgac gtcgcagcca
     2041 aattcattgg ccgtgccaat atctcaaagg ttgcggtaac atctgcacga gaatatggta
     2101 aaacacctgt agaaaaattt tgcgaactca caggtgcaat gagtattttt ggacgcttta
     2161 tgccaggcac attcacaaac ccatcgttgc caaaatacat ggaacctgaa atcgtaattg
     2221 ttactgaccc gcaagcagac caacaggcag tattagaggc aacaagagca ggtgttccag
     2281 taattgcaat tgctaatagc gacaatgtga cgtcaagagt cgatttagta atacctgcaa
     2341 ataacagagg gcgaaaagct cttgctactg tctattggct tcttgcaaga gaggtattga
     2401 agaaacaagg cacaattaaa tctgacagcg aaatgagaac atcaattgat gaatttgaaa
     2461 caaaattagt cgaggaaata tcttgaacaa tagtcctaaa aggacttcag ttgtagctgg
     2521 aattttctat ccaagtgaac cattagaact caaacaacta atcgaacaat catttagaga
     2581 tcaaaatttt ggccccggta gaatgccgcc atctggctct aaacgaagaa tttatggtat
     2641 tgtttcacct catgcaggat atgtctattc tggtgccgtt gctgcaaatg gatattatga
     2701 aatatcatcg atagatttcg ataatatagt gatgataggt cctaaccatt acggaattgg
     2761 cgctggggta gctataatgc ataagggaat ttgggaaaca ccgctgggtc aaatcgaaat
     2821 caatccatct ttagcatcag aaatctcaaa atattctggt atagttgatt ttgacgattt
     2881 cgcacacagt agagatcatt gtctagaagt tcaaattcct tttcttcaat atatcaagag
     2941 aaatgagttt aagattgtac caattgtgtt aatattacaa gatcaagaga ctgcaattaa
     3001 cataggcaag tccatagctc agaccacagc agattctaaa acattactta ttgcatcctc
     3061 agattttact cactatgaat caaatagcga agcatataga aaggatggtg aattaatcaa
     3121 ggcaatttta tctttagata tttcgaagtt ttattcagta ttggagagat ttgatgtatc
     3181 cgcttgtggc tatggtgcaa ttgcatcaac aatgaaagca gtaaaggatt taggagcaac
     3241 aaaaggtgaa ttgctaaaat atgctacaag cggcaatgtt acaggagata tgaatgccgt
     3301 tgtagggtac tcatcaatta tatttgtgtg attatgagga aaacctcagc aaaggcatct
     3361 gcaccagcaa aaattatttt gtttggtgaa cattttgttg tatatggcag tcatgcaatt
     3421 atggcagcaa ttaacaggcg tattcatgtc gctgtctttt tgaataaaac gcaaacgatc
     3481 aatattacat caaatttggg aattatagga tcgtatacag agtcaaagtt taacttaata
     3541 aaaggcggga agaatacaaa agaaatcctc gatccaatct acaagtctgc ggttgatgtt
     3601 ctttcagaaa gaaaacaaaa tttaggaata gatattaatg tagtgtcaga agtcccacat
     3661 ggagttggac taggatcttc tgcagcgtgt tgtgttgcta cggtagctgc agtagatgca
     3721 ctctttcaca aaccagataa actgtgggta tgctcaaaag caattgaatc agaacggata
     3781 gtccacaagg actcttctgg aggagattgt tacatttcga cattcggagg tttaatatat
     3841 tatagcaaaa tcaaaggatt caaaacaatt gaaacaacaa gagatttgtc tttgatcatt
     3901 gtaaatactg ggatcaagca tcgtactgga gatctagttt cttctgtaaa aaaatttaag
     3961 aatgataaca gatcattgtt tagagactta tcttcctatg cggataatat ttgtcaagac
     4021 gctttaactg caatcaatat tggcgatgag aaaaaacttg gcaaattgat gaatgaaaat
     4081 cacacactac tacaacagat aagagtatct cataaaatat atgaccagat actaaaaatt
     4141 tgctttaaaa atggtgcttt aggagtaaaa cttactggtg caggcggagg gggaagtatg
     4201 atcgtgctta ctctaaagga agataaaata aagttaactt ctgaaattga gagaaatagc
     4261 tatgaatgca taccagcaaa gatcgactat aatggattag ttgtatacta aactttaaat
     4321 ccgcttagaa atatgacttt ttagaagatg gtacgtaatc tcatattgat caagctaggt
     4381 ggatcggtaa ttaccttcaa agaaaaacca cttactgcca attttgaagc aattaacaat
     4441 atttcacgta ttcttgcctc cctgaagata ccactcataa tagtccatgg cggtggttcg
     4501 tttggacatc atttgtctat aaaatacaat atgcatacaa ggcccgatca atatgatcca
     4561 catggcatct cagtagtaca tgaatcaatg attacattaa accaagttat agttaattcc
     4621 atgattaaag tggggatgaa cccttatgca attatgcctt caaattttac attcgctcat
     4681 aaaccaattg ctaaaaaaat taaggaactt caatccattg cagaagacag cataattcca
     4741 ataacatttg gagatattgt tcacataaaa aatagaacat attcaatcat ctctggagat
     4801 gccttgatgt cgatcctttc caaaacttta agaccatcga aagtcatttt tacgcttaac
     4861 gttgatggaa tttacaagga catgaatgag aaagaagttc tcaaagaatt agataacatt
     4921 aacgactcca tcaatttttc aaaggtagta caagatgtta caggcggcat gcgaagaaaa
     4981 gtgacagaag cactaaagat atgtggtagt ggaatggatg tatttatgat aaacgggtta
     5041 aagcctgaaa ggattgcaaa tgccataact gatactgaat ttgaaggcac agtgctaaaa
     5101 ggattgagga gtagtaaata gtttgattga cacatttagt tcgccatcag atattgaaat
     5161 cataaaacaa cgtaagaaag agggcattga tatacctttg aaacaaaatg ttcaagcaaa
     5221 gacgacatca aactatttag aatacgttaa atttatccat aatgccttac ccgaacttaa
     5281 ctacgatgat attaatacat caactacttt tatgaagcac aaattttctg caccggttat
     5341 tattgactct atgactggtg gaactcctga agcaattaat atcaatggaa gattggctga
     5401 acttgcagag aagtatgaat ttgccatggg tctgggaagt cagagagcag gtctagaaag
     5461 cagggaatta gctgaaacat attctgtagc aagaaaaaac gcgcctactg catttcttat
     5521 ggcaaatatt ggtggagcac aacttggcaa agggcttaca gttgacagca taaaagaaat
     5581 tataaagatg atacaagcca atgctcttat agttcacctt aatccattgc aagaacttgt
     5641 tcagccagaa ggagaaccaa attacaaagg agttcttgag aaaatttctg aactagtaga
     5701 aaaactcgat gttcctataa ttgtaaagga agtaggtgca ggaatttcta aagaagtcgc
     5761 tataaaatta gagatggcgg gcatatcttc aattaatata gcaggtgccg gcggaaccag
     5821 ctgggcagca gttgaaaaat tgcgagcaga gacagcaaat gacgacctta aaattcatct
     5881 aggcgagatg ttttgggatt ggggtatccc gaccgcatta agcctaattg aagtaaaaaa
     5941 ggcagtgaaa ctacctctta tcgcttctgg tggattgcgc aacggattag aagttgcaaa
     6001 atgtattgca ctgggtgcag gcatgtgtgc tatggcctat ccatttttaa taaaggctgc
     6061 agaatccaaa gaaagtttgt ttaagtttac tgacattatt ctcgccgaac ttagaagtac
     6121 aatgtttctg ctaggtgcag aaaacattcc agcactggaa agctcaagat atatattaac
     6181 aggagattta gcagagaggg ttaaatgtgg atgaagacaa gtagtattag agatgaactt
     6241 gaatctaatg cttctgatat aaaagaattc attctctcaa ttttagaagg agagccaaag
     6301 caactttatc aggcatcagc gcactatatc ataagcggtg gcaaacggtt acgacctttc
     6361 atggtagtta aatcatgcga aatgtttggt ggaagctcta aaagagcatt acccgcagct
     6421 gcagctgttg aaatggttca caatttctct cttgttcatg atgatataat ggataatgat
     6481 gatatgcgcc acagcgttcc aactgttcac aaatattatg gtaccccgct agccattctt
     6541 gcaggagaca ttctattttc taaggcattt caactattag ctgtaaatgg tagagaagta
     6601 gggctcgcag aaaaagcgat ctctgaaatg attacaaagc tctcaactgc atgcatatat
     6661 gtgtgtgaag gccaggctgc tgatgtcaac atggcatcaa acagaatact ttcacatgaa
     6721 tctcaatata ttaacatgat tggcaagaag actgcggctc tttttgaggt ttcttgtgcg
     6781 ctaggcgtat tatcctccat agatccgagt atacaagatg ttgcaaacct ttcatcattt
     6841 ggaaggaatg taggtattgc atttcaatta attgatgatt taattggaat aacaggagat
     6901 ccgaaaatta ctggcaaggc agtgggaaat gacataagag aaggtaaaaa tacataccca
     6961 atccttctcg cattaaacta tgcaaaaggt gaaaataagg acaagatcct aaaagtattt
     7021 agatcgaaag atgcctcaag tattgattta gaggaggcag ccaaaacgat ttctgccatt
     7081 ggcatagatc aacatgtaag agatgctgca aaatcacacg tatacaaagc aataaaatca
     7141 attgaaaact acgatgattc agatgctaag aaggcactag aatcttctgc caattttata
     7201 gtagaaagga gcatgtaatg tggcttttaa cgaagatact gaaaaaatca tcaaaattac
     7261 tgtattgaaa aatgcacttg aatataaagg aaaatcgaga gtcgacacag ttattgcaag
     7321 agtcatagga tctaggccag atcttcgaag taatttgagg aatctaattc ctaaaattac
     7381 agaaacagta cagaaaatta attcgctctc cttagcagac caaaaagcat tgcttgagca
     7441 ggccgcacct ggagaatctc aaaaaaagaa gatcgctgaa agctcccagg cacccttacc
     7501 gccattacaa ggcgctgaga taggaagtgt ggttacaaga tttccgccag agccaagcgg
     7561 atatcctcat atagggcatg ctaaggcagc catcattgat gaggaatatg cacacatgta
     7621 taatggaaaa tttattttac gctttgacga tacaaaccca ttaaatgaaa aattggaata
     7681 ctatgaagca attagtgaag gcttggaatg gctcggaata aggccggata tcgtaaagaa
     7741 tagttctgac gatatccaat tgttgcatga gtatggtaaa aaattgatcc tttctggcgg
     7801 ggcatatgtt tgcacttgta accagaaaac aattcatgat cttagggcaa gaggacttcc
     7861 atgcgactgt cgaaaggatt tcagtgtggc tttggatcga ttaaaaaaaa tgtttgatgg
     7921 atcttttgag cataacgccg cagttatcag atttaaggga gacatgtcgg accaaaatac
     7981 tgcaatgaga gaccccaccc tttttaggat aatagatggc gagcatccaa aaattggtta
     8041 taaaattcgg ttgtggccaa cttatgattt cgcggcgccg gtcgaagata gcattgatgg
     8101 ggtaacacat gcaatgcgaa caaaggagta tgaattacga aatgcattat actttgcaat
     8161 actcgacagg cttggacttc gaaagccttt attgatagaa ttttcaaggt tagaatttaa
     8221 tggagttcca gtttccaagc gaaaaataaa gccactgata gaaaaaggca ttgttaaaag
     8281 ttggagcgac cctcgtctcc caactttgat gggaattaaa agaaaaggtt tcttacctga
     8341 agcaataaga aaatttgttc tttcattagg attgacactt gctgaaacaa aacctccagt
     8401 tgaaaccctt gaagcattca atagaaaaat tattgattcg cactgcatga gattattctt
     8461 tgttaaggat cctgtagaat tgaagattca aaacgcttct tcaaaggaga ttacactaaa
     8521 gaatcatccc aataacgatc ttggtacaag aaaagtcgcc gtttcaaact cattttatat
     8581 ttctgctgaa gatgcagcga aactcaatat taatgatgag atcagactga tggatttatg
     8641 taacataaag ataatcaagt ttgagcccaa tcatactagg aaggcattaa ttgctgctgc
     8701 tataccagag aatataaaac aaggcatacc aaagatccaa tgggttgcaa agagtgacgc
     8761 aattccttac aaagttatga taactagaga attatatttg ggggaaaaat acaatccaaa
     8821 tagtctcgag atctgcgaag gatatgcaga gtcatttgtg tcaattctca agatagatac
     8881 taggattcaa tttgtaagat ttggattctg tagaattgat gatagtaata ctgcgatatt
     8941 tacgcacagg tagatggaca acaatgaaga ttgcaagaat aaagaatact aaggaaggag
     9001 atacatacgc agttatttct gatgacggaa agcgactaat tactaaatca gaaattcaag
     9061 aacaaactgg tattcctatt ccttcgaaca ttaaggaatt tatgtttaag ggttggttag
     9121 atgaaataaa agaacatcaa aataaattaa tgtataatca caaagttgaa gacattgaac
     9181 ttttggcacc catttcaaat ccgcccaaga taatctgtct agcgttcaac tattatgatc
     9241 acgccagaga tgcagggctc acaccttccg atgagcctgt catattcatg aaaccaagaa
     9301 ctacactgaa ttctcctttc aatgatataa tatgcccatc atttgtaaaa cgtttagatt
     9361 atgaagcaga aattgcagta ataattggag aagatacaaa aaaagtatcc gaaaatcagg
     9421 ccctagagac tgtttttgga tacatgattt tgcacgatgt atcctctcgg gatatccagt
     9481 tcaaggacaa acaatatact cgtgcaaaga gtatcgatac ttttgctcca tgtggtccat
     9541 ggattacaac taaagaggaa gtaggagatc cacaaaatct aaaaatcgtc actaaagtca
     9601 atggtgagac ccgtcagaat tcgtccagta taaacatggt attgccaata aagagaataa
     9661 tttcaagttt gagcatggta atgaccatag aagcaggaga tatcatttct acaggcactc
     9721 cagcaggcgt agcaatgtca atgaaggaac cgaagtattt gaaagacggt gacatagtcg
     9781 agattactat tgaaaagctc gggatgatca gaaaccgtat tgtatttcaa taatagtctg
     9841 attttattgg ttttaagctt tattagatcc gcccggaccg gtatcttcat cacatcctaa
     9901 caaatccaag ctataatatt gagcacttaa tcttgttgta ccttcaaaat accttcgtgg
     9961 tgtgtctcat tacagcgcta agctgatcct gaaataaatt aatgaaaggt aatagtatct
    10021 cccaagcact gttttgtgag tttaaaagtt tggcaattaa ctagcataat ttacatcatg
    10081 tgcgtttgtt tatcctagta atttcctttt ctaataatct tgcataatat tcatatgatt
    10141 caactagttt acctctaat
//
LOCUS       DASQSJ010000326         3333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_236957, whole genome shotgun sequence.
ACCESSION   DASQSJ010000326 DASQSJ010000000
VERSION     DASQSJ010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_236957"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1334
                     /locus_tag="VE223_06480"
     CDS             <1..1334
                     /locus_tag="VE223_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HZC21272.1"
                     /translation="SERAVSHLTIPINIQERKLKGNYTRHKVPGHTSDIYNPLIMPDR
                     KLIEKAANILNSGERVVILAGQGALGAGEELIAVAEKLGSPIVKALLGKAVIPDDNPY
                     SIGGLGLLGTEPSTDAMSEADTLLMVGTSFPYIDYLPKPGQAKGIQIDIKQEKIGVRY
                     PVEVGLVGDSKLTLSVLLPLLRSKIDLGFLKSKQDAMKDWNNLLKERSSRTGDKPIKP
                     QFIADIVSNELEDNAIISADSGTVTTWAARHIRVRKGMKFSVSGTLASMACGLPYAIA
                     AQIAFPERQSIAFVGDGGLTMLMGEFATAVQYKLPIKVIVIKNNTLGMIRWEQMAFLG
                     NPEFGVEFTPIDYVKFAEACGGKGYYVKEPDDVKSTIHFALKENSPIIIEAHVDPFEP
                     PMPPKTDLEYVNNLAKSFARGQPYSGRIGLTLFRDKVHEVLKNIHSHAYDA"
     gene            2062..>3333
                     /locus_tag="VE223_06485"
     CDS             2062..>3333
                     /locus_tag="VE223_06485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HZC21273.1"
                     /translation="MTDTISYDILIVGSGIAGLRAAISAASVDSKLRIAVISKVQVMR
                     SHSVSAEGGTAAVIFEEEGDNQESHIYDTIKGSDFLADQDVAEKLVRSMPFEIYQLDH
                     WGMPWSRRKESGRIDQRWFGGYAFPRATYAQDKVGFFEMQTLYDTCLKYDNIHFYNEW
                     FCTSILTGDGNHSSKNSNYNNFRGVTAIEMKSGDFVKFKAPAGIICTGGAGRIYSFST
                     YAYSSTPDGLDMAYRAGLALKDMEFVQFHPTGILPSGILITEGARGEGGYLINNQGER
                     FMKKYAPNSLELASRDVVSRGMMKEIQEGRGFKHDTGVDCLKIDLTHLGADRIQERLG
                     GIREIGIKFSGIDIIEEPIEIRPVCHYMMGGIHTNIDGATEMKGLWAAGEAACNSTHG
                     ANRLGANSTGECLVWGKITGELAAQYALNHKS"
BASE COUNT         1112 a          547 c          736 g          938 t
ORIGIN      
        1 tttcggagag agcagttagc catctgacaa tacccataaa tattcaagaa agaaagctaa
       61 aaggcaacta tactaggcat aaggttcctg gccatacttc tgatatttat aatcctttga
      121 tcatgccaga tagaaaattg atagaaaagg ctgcaaacat tttgaattca ggagaaaggg
      181 tagtaatact ggctggacag ggagctcttg gcgctggaga agagctaatt gctgttgcag
      241 aaaagttggg ttctccaatt gttaaagcac ttttaggtaa ggcagtaatt ccagacgata
      301 atccttacag tattggaggt ctgggtcttc tcggaactga accgtctacc gatgcgatga
      361 gtgaagcaga cacgcttctc atggtgggaa catcatttcc ctacatagat tatcttccaa
      421 aaccagggca agcaaaagga attcaaattg atataaagca agagaagatt ggagtacgat
      481 atcctgttga ggttgggttg gtaggtgact ccaaactaac attatctgtc ttgctccctt
      541 tattacggtc gaaaattgat cttggatttt taaaatctaa acaagatgca atgaaagact
      601 ggaataactt attaaaagaa agaagcagta gaactggcga taagccaatc aaaccacagt
      661 ttattgcaga tattgtttct aatgaacttg aagataatgc aataatctcc gctgatagcg
      721 gtacagtcac tacatgggct gctcgtcata tcagggtccg aaaggggatg aaattttcag
      781 tatcaggtac tttagcatcc atggcctgcg gtttgcccta tgcaatagca gcacagattg
      841 cttttccaga gagacagtca atagcatttg ttggagacgg tggcttaacg atgctaatgg
      901 gcgaatttgc tacagcagta cagtataaac tcccaatcaa agtaattgtt atcaaaaaca
      961 acactctagg aatgattaga tgggagcaaa tggctttcct tgggaatcct gaatttggag
     1021 ttgagttcac acctatcgac tatgtgaaat tcgctgaagc atgtggcggc aaaggatatt
     1081 atgtaaaaga acctgacgac gtaaaatcaa caatacactt tgccctaaaa gaaaacagcc
     1141 ccatcataat tgaagctcat gttgatcctt ttgagccacc tatgccgcca aaaactgatt
     1201 tagaatatgt taataatttg gcaaaatcat ttgcgagagg tcaaccttat agtggaagaa
     1261 ttggcctgac tttgttcaga gacaaagtac acgaggtact aaaaaatatt cattcacatg
     1321 cttatgatgc ataaagataa aaataacctg tttaacttaa tgaaaaacaa ctagctttac
     1381 tactactgct ggcaattttc atgtattgga ttgttcattc aataataacg cttctcccaa
     1441 aagtagatgc aggtgatgct caccaagcat atcaataagt ttctttatct tatacatatg
     1501 gattatcagc agagaatttg aagatcatgt gacaaatatc aatcaagaat gaatttagag
     1561 aaaacttata cacatcttcc aacatgaaag attattgaat gcattaattc tgagtttgtc
     1621 ttcataatga aagataggga tatcttgtta ccctaactta atatctcttg tagatattga
     1681 aaatgtcaat gaacgatgca agtattttag cagagatggg aataaagaaa aagaaaagta
     1741 cagcaacgat tacatataag aaggattgtt gaagaatatc gaggaaatcc attacaaaat
     1801 aggaggtaag ctttatacag agaatgcaga ccaataatat attatttaaa gtaagagaga
     1861 aaacaaataa aaatactaaa agagcaagat gtgaaatttt aataataggt tttaactctt
     1921 attattctaa taatacaata ataaaaaggg ttgaacgtgt ggttgtcttt attttggcat
     1981 atgtgtggat tatgtatttg caggcgctgt cagtcgtatg atattcatag ctattaattt
     2041 ggaggttaaa attaagaata tttgactgac actatttctt atgatattct cattgttggc
     2101 tcaggcatag caggactgcg agcagcaatt tctgcagcgt cggtagactc aaaattacgt
     2161 atagcagtaa tttcaaaggt acaagttatg cgttcgcatt ctgtatctgc agaaggtgga
     2221 acagcagcag tgatatttga agaagaaggc gacaatcaag aatctcatat atatgatacc
     2281 atcaaaggga gcgatttcct tgctgaccaa gatgtagctg agaaacttgt aagaagtatg
     2341 ccatttgaaa tctatcaatt ggaccactgg ggaatgccat ggtcaaggag gaaagagagc
     2401 ggtagaattg atcagcgctg gtttggaggg tatgctttcc caagagctac atatgcgcaa
     2461 gataaggttg gatttttcga gatgcaaaca ctttacgata catgcctcaa gtatgacaat
     2521 atacactttt acaatgaatg gttttgtact tctatcctca ctggtgatgg taatcatagt
     2581 agtaagaata gtaactacaa taactttcgc ggtgttacag caatagagat gaaatctggc
     2641 gactttgtta aattcaaagc acctgcggga ataatttgca ccggtggagc cggacgaatt
     2701 tacagctttt ctacatatgc ctactcttct acgcctgatg gtttagatat ggcatatcgg
     2761 gctgggcttg ctctaaagga tatggagttt gttcagtttc atcctactgg tattttgcca
     2821 tctggaatat tgattacaga gggtgcaaga ggagaaggcg gttatcttat aaataaccaa
     2881 ggtgagagat ttatgaagaa atatgccccc aattctctgg aacttgcttc aagggatgta
     2941 gtatctcggg gcatgatgaa agagattcag gaaggtaggg gatttaaaca tgacactggt
     3001 gttgattgtc tgaaaataga tctgacccat cttggagctg accgcataca ggagcgcttg
     3061 ggaggcataa gggaaattgg tatcaaattc tctggaattg atataattga agagccaata
     3121 gagatcagac ctgtatgtca ttatatgatg ggaggaatac ataccaatat tgatggtgcg
     3181 actgaaatga aaggactatg ggcagctggt gaagcggcat gtaatagcac tcatggtgct
     3241 aatcgtttgg gggcaaactc cacaggagaa tgcctcgtat ggggaaaaat aacaggtgag
     3301 ctggcagcgc aatatgccct gaatcacaag agt
//
LOCUS       DASQSJ010000327         2440 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_117640, whole genome shotgun sequence.
ACCESSION   DASQSJ010000327 DASQSJ010000000
VERSION     DASQSJ010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117640"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VE223_06490"
     CDS             <1..374
                     /locus_tag="VE223_06490"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21274.1"
                     /translation="LNENMILDAFDRLNAGIVAKESVVLIFEKIMKKESKTIDEAVAE
                     LGIVPVNEQEFQRIIDKILEENMSIVKSKGIASLGTLMGRCMSVLRGKIDGEKINSVL
                     KQKLEQLLASNTGLKTQEYQD"
     gene            complement(503..1087)
                     /locus_tag="VE223_06495"
     CDS             complement(503..1087)
                     /locus_tag="VE223_06495"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family glutamic-type intramembrane
                     protease"
                     /protein_id="HZC21275.1"
                     /translation="MSTYRRTSIGYLTKMLLFYHGIGLLLMLVGSSVAESLISDYKEP
                     SIPLSLTSVLSAGPIEETIFYGIPFYIFGNNLVVLAGGIAWAMIHILNTNTPSFSNLA
                     YANWLFVVPSLFFSLRTWISGKGWFAILTHSAWNGIFFMLGCAFGETSCANISSEKIF
                     AISIGSIILSGALLSLTYLLYKRNHDKKAQRLAT"
     gene            1448..>2440
                     /locus_tag="VE223_06500"
     CDS             1448..>2440
                     /locus_tag="VE223_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21276.1"
                     /translation="MAISVAFFGLGVGALLVHILKSKIRNDRLPSKILQSVIAFAVSL
                     PIFLFVIGHIIPSSTSYIYLFYLASSVPFFFAGISMALVYLAMPREISKLYFVDLMGA
                     AAATLVLDSLMRTLGAESVLISIDLMLIGPSLVAALMFKPAEKKKDTSEPLVIETKIR
                     SYALVAFAVSAMLLATNAGSTILAIQPGEIKGLHYQLTNPSIFKHLSTQWNSFSRIDV
                     TRQLYYHNNGDPDENGRSKTLAQVAIDADADTPVFRWNGSIADIQWLKNFMDYLPYEM
                     SKANNNTLVIGSGGGEDVLVALAGGSKNVTAVELNPLIVSAAKRFGGSSAGNLYD"
BASE COUNT          791 a          413 c          456 g          780 t
ORIGIN      
        1 tattaaatga aaatatgatt ttggatgctt tcgataggct gaatgcgggc attgtagcaa
       61 aggaatctgt agttctaatt tttgaaaaaa taatgaaaaa agaatctaaa accatagatg
      121 aagctgttgc agaacttggg atagtgcctg taaatgagca agaatttcaa aggataattg
      181 acaagatctt agaagaaaat atgtcaatag taaagtccaa aggcattgca tcccttggta
      241 cgttgatggg taggtgtatg tctgtgcttc gaggcaaaat agatggcgaa aaaatcaact
      301 cggtattaaa gcaaaagttg gaacaattgc ttgcctcaaa tactggctta aaaacacaag
      361 agtatcaaga ctaaattaat caagcacaat tatgatgacc ttgtcatttc tcttgacatg
      421 gaaacatcta ttttaagtat atctaaattc gttgctgaaa agaaggttac attacattgt
      481 ttatataaac aataaagagc ctctaagttg caagtctttg agctttctta tcatgatttc
      541 tcttgtatag gagatatgtt aaacttagca atgctccaga taatattata ctacctatgc
      601 ttatagcaaa gattttttca gatgaaatat ttgcacatga tgtctcaccg aaggcacagc
      661 ctagcataaa aaagatccca ttccaagccg aatgggtgag aattgcaaac cacccctttc
      721 cgctaatcca cgttctaaga ctaaaaaaaa gtgaaggtac tacaaataac caatttgcat
      781 atgcaaggtt gctaaaacta ggtgtatttg tatttaatat gtgaatcatt gcccatgcaa
      841 ttccacctgc caaaactact aaattatttc caaaaatata aaatggaata ccatagaata
      901 ttgtttcttc tatgggtcca gcagacagga ctgatgtaag tgaaagtgga atagatggct
      961 ccttgtagtc tgaaatcaga ctctcggcta ctgatgaacc tacgagcata agtagtaaac
     1021 ctatcccatg gtagaataga agcatttttg taaggtaacc aattgaagtt ctacgatatg
     1081 ttgacaacca tgacttggga ttcatgtctg ttttgatatc ataaaatgtt gatgacagtt
     1141 gatgttcatt ttttctaaag taaatgaact attaaagaat gttacctgac ttgcaatata
     1201 atgcaattca agtttcaata acgcatgtgt ctaaaccata aatgctgttt aagcatagaa
     1261 ttagattgtt aatctatcta gaaaacctta tatgtgaatt agatttcgtc tttttgagtt
     1321 gctacattat actcatctga caatttttct atttgttaca ctttttgttt tatcattaag
     1381 tgtattgtta tttgagctta cactaacacg aattttctca attgttctat ggtatgatta
     1441 tgcctttatg gcgatttctg tagcattttt tggacttggt gttggagctt tattagtaca
     1501 tattctaaag tcaaaaataa gaaatgacag gttaccatcg aaaatacttc aatctgttat
     1561 cgcctttgca gtttcattac cgatattttt atttgtaata ggacacatca tcccatccag
     1621 cacatcttat atatatttat tttatctggc atcatcagtt ccattcttct ttgcaggaat
     1681 ttcaatggca ttagtatacc ttgcaatgcc aagagaaata agtaaattgt attttgttga
     1741 tttaatgggt gctgctgcgg ccacacttgt acttgattca cttatgcgta ctttgggtgc
     1801 ggaatccgta ctaatttcaa tagacctaat gcttattggc ccctcacttg ttgctgcgct
     1861 gatgtttaaa cctgcggaga agaaaaaaga tacctctgaa ccattagtaa ttgaaactaa
     1921 aataaggtca tatgcactcg tagcgtttgc tgtttctgct atgttattgg caactaatgc
     1981 tggctctact atactcgcaa tacaacctgg agaaatcaaa gggttgcact atcagcttac
     2041 gaatccgtca atattcaagc atctttcgac tcaatggaat tcgttctcta gaattgacgt
     2101 cactagacaa ttatattatc acaacaatgg cgaccctgat gagaatggta gatccaagac
     2161 gctagcccaa gtagcgattg acgcagatgc tgatacaccg gtgttcagat ggaatggctc
     2221 tattgcagat attcaatggt taaaaaattt tatggattat ttgccatatg agatgtcaaa
     2281 agcaaacaat aacacacttg tcatcggtag tggtggagga gaggacgtat tagttgcatt
     2341 ggccggcggc tcaaagaacg tcactgcagt agaattgaat ccattaatag tatcggcagc
     2401 aaaacggttt ggtggaagtt cagcaggaaa tctgtatgac
//
LOCUS       DASQSJ010000328         2710 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_117681, whole genome shotgun sequence.
ACCESSION   DASQSJ010000328 DASQSJ010000000
VERSION     DASQSJ010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2710
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117681"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VE223_06505"
     CDS             complement(<1..545)
                     /locus_tag="VE223_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21277.1"
                     /translation="MASVATSIIIGISAFLVMILNNNSTFAIASGIGSDDNILVLTKG
                     IIPNDSDVSKIKATAIFRSISFADVTLFPQTFQSSASASNEITLSNGKTLEARPTTLT
                     VNKIASNNTLIVNLHSFNDKYLLSGSLKGSSSKTIENTKDHTKFSLAGVITINKQTSY
                     PVISNLTETTNKQITLEISNT"
     gene            complement(1272..1895)
                     /locus_tag="VE223_06510"
     CDS             complement(1272..1895)
                     /locus_tag="VE223_06510"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF016362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HZC21278.1"
                     /translation="MAVSALCQKITLEEFQYRSGIACKTAAKCVLEYLVNNGIGKNLQ
                     NGYSFSRVDRLKVAILALQSGNDIGVISKSLSWQDFEEFASTLLNLSGYVAECNVRFS
                     KPNRIQIDVVGVNYNSQLAIVVDCKHWQRNNLSSITYYARKQAHRTSLLLLHRRNKIS
                     QAVPMILTLYPVDMKLVDGIPIVPIIKFNSFIENVALYLSKIKVIYA"
     gene            2223..>2710
                     /locus_tag="VE223_06515"
     CDS             2223..>2710
                     /locus_tag="VE223_06515"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HZC21279.1"
                     /translation="MKGKIIIHKHESNILKSNPLKDPYRRDVIVYLPPGYSQSYSKGY
                     ITAFGLPGFGSQGRTLLNADPLGENIEQIMNRLISEKKCGPMILVLVDCFTRFGGNQY
                     LNSSATGRYEDYIIKEIVSFVDNNYNSSARAVFGHSSGGYGALMLGIRHPDVFNALSD
                     HSG"
BASE COUNT          897 a          443 c          518 g          852 t
ORIGIN      
        1 ttagtattac taatctcaag agttatctgt ttatttgtag tttcagtaag gttagagata
       61 acaggatagg atgtttgttt gttaatggta ataacaccag caagagagaa tttcgtgtga
      121 tctttagtat tttctattgt cttgctagac gaacccttaa ggcttccact tagcaaatat
      181 ttgtcattga agctatgcag atttactatt agagtgttgt ttgaagcaat tttgtttact
      241 gttaacgtgg ttggtctagc ttctaatgtc ttgccattgc taagagtaat ctcatttgat
      301 gcagacgctg aagattgaaa tgtttgagga aacaatgtaa catcggcaaa acttatagaa
      361 cgaaatatgg cagttgcttt aattttagat acatcagaat cattagggat aatgcccttt
      421 gtaagaacca agatattgtc gtcgctcccg atcccactag caattgcaaa tgtgctatta
      481 ttgttgagta tcattactaa gaaggctgaa ataccaatta taatagaggt cgcaacagag
      541 gccaagttgt taagactcta cctgtatagc ttataaggtt tgctgaccac aagggagttc
      601 tataaatgag tttctaaagt gagcaaggga taaacaaatg gaaagaggag gaggaagaag
      661 agaagattaa gaagaaggag aagaattaat gctgctatgc tatggctata ttgtatcgaa
      721 ttctattgaa ttcctgttag gcgttctact tccattgaag gggttcacag agaaagtaaa
      781 ctacccataa gcacagatct cagacatatg acgagcattt gaactattgt tgatagatct
      841 cgctcaatcg tctagttcta gaggggttac tgcatgagtt ggcgagaata caatattgca
      901 aaagtggcaa tataattcac gataatgata aattttgtct ttaatgtttt ctgtaagtat
      961 cacgtatctg gaattgtgac aggacggaca acctaataat tttttgtttt gtcctttttt
     1021 aatatttttg ttattgttgg tgaagtcaat ccgcattgaa agcagtttgc caaatgatct
     1081 tatagagaat aagactaatt gtctacttta ttttttatta aaatatccca ccatatattt
     1141 atacttaaaa caaagaagac aagatctttt gatatggtaa cgcagctatg acatcatacg
     1201 gcttgtttct gggtacaggt ctgtacactc gaggcagcta tgatgataat gctttaatta
     1261 acaaattact gttacgcata tatgacttta atctttgaaa gatacagtgc aacattctcg
     1321 ataaaggaat tgaatttaat tatgggtacg atagggatac catcaactaa tttcatatcc
     1381 acaggataaa gagtcaatat cataggaaca gcttgagaaa tcttatttct tctatgaagt
     1441 aatagtaggg acgttctgtg agcttgcttt cttgcataat aagttataga cgaaagattg
     1501 tttctctgcc aatgtttgca atcaactaca atagctaatt gagaattata attgactcca
     1561 actacgtcaa tctggattct attgggcttt gaaaatcgca cattgcactc agctacatat
     1621 ccagataggt taaggagtgt ggaggcaaac tcctcaaagt cttgccagct taaagatttt
     1681 gaaatcactc caatgtcatt tccactttga agtgcaagta ttgcaacttt cagcctgtcc
     1741 accctagaga atgaatagcc attctggaga ttttttccta tcccattgtt aaccaaatat
     1801 tctaaaacac actttgcagc tgtcttgcaa gcgatcccag atctatactg aaattcttct
     1861 aaagtaatct tctggcacag agccgatact gccatagcca ataatacagg ttgcacaaaa
     1921 ctagatgagt aaaccagtat attaagacaa taaaaacagt tatttctgac ttgtcctgat
     1981 cgtatatttt acggtccctc aatagtcttc tttaaaattg aaaggtcttg ttttagaact
     2041 tgaattgtct acaatcactc attaaatttc aagtataatg tacaaaatcc ataaaccatg
     2101 ttagaacaag agatgggaat acctcaacta cgatgtgaga atgaaaatag gtaacagcat
     2161 taaaaataag gaaatcagca tattataata gcaatggtta actaactaac tagctgacta
     2221 gtatgaaagg gaaaataata atacacaagc acgaaagcaa tatcctgaaa tctaatccac
     2281 taaaagatcc ttataggaga gatgtaatag tatatctccc tccaggatac tctcaatctt
     2341 attcaaaagg gtatattacg gcatttggac tcccaggttt tggtagtcaa ggaaggacgc
     2401 tattaaacgc agatcccctc ggggaaaata ttgaacagat aatgaatcgt ttgatttcgg
     2461 agaaaaaatg tggtccaatg attttggtgt tagtggattg ctttacaagg tttggaggaa
     2521 accaatacct aaactcgtca gcaacaggaa gatatgaaga ctacataata aaagaaattg
     2581 tttcttttgt tgacaataac tataatagct ctgcacgggc ggtatttgga cattcttctg
     2641 gcggatacgg tgctctcatg ttagggatac gacatccaga tgtatttaat gcattatcag
     2701 atcattctgg
//
LOCUS       DASQSJ010000329         6192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_196825, whole genome shotgun sequence.
ACCESSION   DASQSJ010000329 DASQSJ010000000
VERSION     DASQSJ010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196825"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..712
                     /locus_tag="VE223_06520"
     CDS             164..712
                     /locus_tag="VE223_06520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21280.1"
                     /translation="MSTSKKQDRKEGNNSNNITETYSQLQREQEQAITKALDESKDNI
                     KKTTNEARREIPRYTDVVSDYQENTVQAIREVADAYIESQKDIIVNSLQLWSNWMISP
                     RQIAEDYSNAVSSLADNAISATRLANNAISANLQVFNTSVQTAKENVKEFSKMSGNTI
                     KTFQQVSKHPDKHFARSSLIEQ"
     gene            1497..1895
                     /locus_tag="VE223_06525"
     CDS             1497..1895
                     /locus_tag="VE223_06525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21281.1"
                     /translation="MFTKRTTVAIFVILAALALITAGSYASSAVVSGYHKKRTITTSN
                     SVSNNDLKSLFACQSKAAKNGPVTQAEVDNCYNQIFPQGQGGQTQPSSVQQTASVQQP
                     SSMQGGQTPPQQTASVQQLLQLMREGFPFK"
     gene            2138..2335
                     /locus_tag="VE223_06530"
     CDS             2138..2335
                     /locus_tag="VE223_06530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21282.1"
                     /translation="MYYDDSDELAYLWTKIKFVQKYMNKNKSSSIGDAEKEFQRLIEG
                     LMASRIEQANKILNARHSLNE"
     gene            2433..2627
                     /locus_tag="VE223_06535"
     CDS             2433..2627
                     /locus_tag="VE223_06535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21283.1"
                     /translation="MYTTGMVSNTTTTDRTRKIAITLPKSVLQKIDNERGDVPRSRYI
                     LRAVESYLHVKKGSRSRGEH"
     gene            complement(3196..4146)
                     /locus_tag="VE223_06540"
     CDS             complement(3196..4146)
                     /locus_tag="VE223_06540"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0002189 - ribose phosphate
                     diphosphokinase complex [Evidence IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HZC21284.1"
                     /translation="MSTFLRMITTHEPSYNLNGEISIIAGPSSTDLATRIARDLDAEL
                     IPVDVRIFTDGESKIKIGKSGKKCCIIVQSTYPPTDRHLLQALMMIKNCTDCKAVNVY
                     TVIPYMAYARQDKVFLEGEVISIALVAKLLEAVGTKQVITVDIHSSLALSHFTINVHN
                     ISSIPILADYAANQMKLTKPIVVSPDSGGIARAREFAKILKVDLMALKKSRNRDTGEV
                     HIDERLDSSIMDRDVLLIDDMISSGDSIVNACRALKKNECGKVYALCTHALLVGNAIQ
                     RIKAAGIEDIIATNSIPTEFAKVDLSQIISENLRNLVQSH"
     gene            complement(4315..5115)
                     /gene="murI"
                     /locus_tag="VE223_06545"
     CDS             complement(4315..5115)
                     /gene="murI"
                     /locus_tag="VE223_06545"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HZC21285.1"
                     /translation="MNNPVSVFDSGVGSLSIIRELKKEIPHENLLYFADRAHFPYGNK
                     SHAELREIIVNTVKYLGRFKPKLIIIASNTPSIQVLDEVKRIANIPIPLLGVRPPLKM
                     ACRLTKRKHIGIMATQGTIMSKGLEDQIRREIPQDILVTKFNASSIIELVENGTYITN
                     ERRTYDTISRVLGNELDRKIDVITLSSTHLPFVKRYLSNLLPTVKFVDPATIIAKDVR
                     KFLAFNRILKKTGTGRLQIFVSEGKRYFEQTIRMMGIEEPVEEAHLNY"
     gene            complement(5220..5816)
                     /locus_tag="VE223_06550"
     CDS             complement(5220..5816)
                     /locus_tag="VE223_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21286.1"
                     /translation="MSIAVDSYMGMILPEDISKRIAEFINGQQNFPFIKSNELMCIFY
                     LYGKKSKINGENQLKYVIDLATRTVANMSKDIEKYDNSPKTRINSEYTRSKYINRGLQ
                     IAVEKRIDDVVNEIRISNDPVILSDCFAQHVSYHEQEYHFQIYGPFKESELIRDIQRE
                     LVGRMVMIGYNKKDKESLPFHHPLIPLYIWLRDHQIPL"
     gene            5896..>6192
                     /locus_tag="VE223_06555"
     CDS             5896..>6192
                     /locus_tag="VE223_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21287.1"
                     /translation="MTSAVDTTKTIYIILHGKKDFFEQVKEKLVLKGFEKEKMQNAHL
                     DKAGNPGEYVAMIWPPMAPKEILVNEITELPSKGGKNGERGENRGMGAWENVGQK"
BASE COUNT         2013 a         1080 c         1105 g         1994 t
ORIGIN      
        1 taagtctttg tatcctgatg aatttgccca tctttatcat aaatgtatgt tttacctgct
       61 ttatcattct acaaggcaaa tgcttccgat aatatcattc tatactactc aatactaact
      121 gataccattc attatataca atgtagtgga cagtacaata cacatgtcaa catcgaaaaa
      181 acaagatcga aaagaaggta acaatagcaa taatataacc gaaacatatt ctcaacttca
      241 acgtgagcag gaacaagcaa taaccaaagc attagacgaa tctaaagata acataaagaa
      301 aacaacaaat gaagcaagaa gagaaattcc acgttataca gatgttgttt ctgattatca
      361 agaaaatacc gttcaagcaa tcagagaagt tgctgatgct tatatagaat cgcaaaagga
      421 cattattgtc aattcattac aactttggtc aaattggatg atatctccaa gacaaatagc
      481 cgaagactat tcaaatgcag ttagcagtct agcagataat gctatttctg caacaagatt
      541 agcaaataat gctatttctg caaatctaca agtattcaat acgtctgttc agactgccaa
      601 agagaatgta aaggaattct cgaaaatgag tggcaatacc ataaaaacat tccaacaagt
      661 atcaaaacat cctgataagc actttgctcg cagcagcttg atagaacaat agctatatca
      721 agtaatagaa tagataggca gatgtatatc tacctacctt ggtagactga tagtactcac
      781 aactggaagt atctacaatt tgtctttttg caacaatttt cttaaacaaa acagacaatt
      841 gttcccaacg tgttctttca attaacaagc ctagaggtgt gggcagcctt cgaatatttt
      901 gttgttacgt atagtgagtc tgaatattgg cgatttattt gttcattcat tgtatttatt
      961 agagatggcc gcatctttga aacaatgatg gttcttattt aacatactat accttagcta
     1021 ggaaaatgtt aataacttga cagaagtaaa attgttacta taacctgaca tcatccaaaa
     1081 tcttttcagt tctaattagc tagtttattt caattagaga gatctatatg aataatagta
     1141 ttcatacacc ttccagggta agaagtaatt actataagat tatttagcta tgttggaaga
     1201 accaatgcac ctaactattg caaaaatcct gaagcgttca aatttcgaaa gacattacta
     1261 gtgtgaaaag aaccagcaaa agcttcgatg catttataga taaataacta gataatttat
     1321 tttatttagt ttatactcct tgggtaaata ttactccttg atatttttgc taattttatt
     1381 ttactaactg ttagtcatca atcaatcgtt actaccatat aatgtcgtag taagtaatta
     1441 tgttgtatat tttataatcg tatttcttat aaaatatagt gttactaagg ccggtaatgt
     1501 ttacgaagag aacaacagtg gctatctttg ttattcttgc ggcgttggcg ctaataacag
     1561 caggcagtta tgcttcttct gcggtagtat cagggtacca caaaaaaagg acaatcacga
     1621 ccagcaatag tgtctctaac aatgacttaa agagtttgtt tgcatgtcaa tctaaagctg
     1681 caaaaaatgg ccctgtaacc caagctgaag tggataattg ttataatcaa atctttccac
     1741 aaggacaagg aggacaaact cagccaagct ctgtacagca aactgcttct gtacagcaac
     1801 caagctctat gcaaggagga caaaccccac cacagcaaac tgcttctgta cagcaactac
     1861 tgcaattaat gcgtgaaggt tttccattta aatagcttct ttgacatgtc catacgcggt
     1921 ggctatttgt aggatggtag cagtaacctg atcgtgtgat gaacactagg aacaataata
     1981 gcaccaatta tttttgaggt acttggataa ttaataaacg ataagaatct aagtttattc
     2041 ttttataaca gcaggagttt acctcgcatt ttcattaacc gtatatgaat ccttttacca
     2101 taaatgctta agtatttaat aattgagatt taatacaatg tattatgatg acagtgatga
     2161 attagcatac ttgtggacta agataaaatt tgttcaaaaa tacatgaata aaaataaaag
     2221 ttctagtata ggtgatgctg aaaaagagtt tcaaagactg attgaaggtc ttatggctag
     2281 cagaattgaa caagcaaaca aaatcttaaa tgccagacat tccttaaatg aataataaga
     2341 catgtctatc catgctagag catatataga ttctgtgtag taagagactg gcgtcatttt
     2401 atagaagaat agaaacgctt atagagtcgg atatgtatac tacaggtatg gttagtaata
     2461 ccactacaac agacagaact aggaaaatag caattactct tcctaaatca gttttacaaa
     2521 agatcgacaa tgagcgtggt gatgttccac gaagtagata tatcctgaga gcagtagaaa
     2581 gttatcttca tgtcaagaaa gggagtagaa gcagaggcga gcattgagag cttcgctgct
     2641 aaccttatct gagtagcaat tacagcaatt ggtttgtttt acatcgtagc attggtcatg
     2701 ctaaggttgt gaaataggat tatatttata agaggagttt gaagaggctc aatacaaacc
     2761 atcaccaccc tttcattcac gtaaacccac catatctttg taagagcaca aatacaattt
     2821 taaaaatttc agactacttg ctattgcata ggattgtagc attgaagccc aagtattccg
     2881 gggcatgtgt tgccctatcc aagatatata tgctctatca cgggtagcta aatagaatat
     2941 gcgtttctgg ggtaagcatg gtaatgtgat gttcacctct aaatgtatcc tgaatcggaa
     3001 ttgaacaatt ttcatgaact agagagaagg ggaagagaaa ttagacaagg ggtgtttgaa
     3061 ttctttgcat acatttttct aatatgcaat caaaatctaa tcatcgaaac ggatttacaa
     3121 ggccgaattc tgccttattt attactgctt acagaatagg aaattactat ggccttatgg
     3181 ctcaggaatt cagtattaat gggactgaac aagattccgt aaattttcag atatgatttg
     3241 gcttagatca accttggcaa attcagtagg aatagaattt gtcgcaatta tgtcttctat
     3301 tccggctgcc ttgattcttt gtattgcatt accaaccaat aacgcgtggg tgcataatgc
     3361 atagaccttg ccgcattcat ttttctttag agccctacac gcgttaacaa tgctatcgcc
     3421 actgcttatc atatcatcta tgagtagtac atctctgtcc ataatacttg aatctagtct
     3481 ttcatcaatg tgtacttcgc ctgtgtctct gttacgagat ttctttagag ccatcagatc
     3541 aacttttaga atcttggcaa attctctggc tcgtgctatt ccaccagaat ctggtgacac
     3601 aactatgggc ttggtaagtt tcatctgatt tgcagcgtaa tctgccaaaa ttggaatgga
     3661 agaaatatta tgaacattga tcgtaaagtg tgataatgca agcgagctgt gaatgtcaac
     3721 cgttataact tgctttgttc caacggcttc tagtagttta gctactaatg ctatacttat
     3781 aacctctcct tccaaaaata ctttatcttg acgagcgtag gccatataag gaataacggt
     3841 atagacgttc accgctttgc agtcggtaca attctttatc atcatcaatg cctgtagcag
     3901 atgtctgtct gttggagggt atgtagattg tactatgatg cagcattttt ttcctgattt
     3961 tcctattttg atcttgcttt caccatctgt aaatatacga acatctactg gaatgagttc
     4021 tgcatctaaa tctctagcaa ttcttgtagc aagatcagtg gacgaaggcc ctgctatgat
     4081 cgagatttct ccattcaaat tatagctagg ttcatgagtt gttatcattc ttaaaaacgt
     4141 tgacacgtag cgagaattgg actcctataa tagtgtgaca tataacgccg actaagatga
     4201 tattccatca aataccattt attgttgggt cttgttttac cagattgctg taatactagt
     4261 aagctgataa ataacatata ttctcgacta caatatagtt aatccacact ttttctaata
     4321 gttgagatgt gcctcttcga caggttcttc gatccccatc atacgaattg tctgctcaaa
     4381 gtaccttttt ccttcagaca caaatatctg caatctgcca gtaccagttt tctttaatat
     4441 tctattaaac gccaaaaatt tcctaacgtc ctttgcgata attgttgcag gatctacgaa
     4501 ctttacagta ggtagtaaat tactgaggta tctttttaca aatggaaggt gagtacttga
     4561 cagagttatc acatctattt ttctgtccaa ttcatttcct aatacacgtg atattgtgtc
     4621 ataggttctg cgctcatttg ttatgtatgt accattttct actagttcaa ttatcgatga
     4681 agcattaaat ttagttacaa ggatatcctg aggtatttcc cttctaatct ggtcctcgag
     4741 gcctttgctc attatagttc cttgtgttgc catgattcca atatgttttc tctttgttag
     4801 tctacaagcc attttaagag ggggtcgaac acctagtaac ggtataggta tatttgcaat
     4861 tcttttaact tcatctagga cttgaatgga tggtgtattt gaagcaatga tgatcagttt
     4921 gggtttgaat cttcctagat attttacagt atttacaata atttcacgta actctgcatg
     4981 tgatttattt ccatatggga aatgtgctct atctgcaaaa tataaaaggt tttcatgagg
     5041 tatttctttc tttaattccc gaataattga taatgaacct acgccagaat caaacaccga
     5101 gacagggtta ttcataatag ctatgattta ttacgtagta taaatgtaaa cagatcatat
     5161 ctatatttgt catctcgtag aaaagggaat attgcgatgg catataagtt agatcacgtt
     5221 taaagtggaa tctgatgatc tcttagccat atatatagcg ggataagagg atgatgaaat
     5281 ggtaaagatt ctttatcctt tttgttgtaa cctatcatga ccattcttcc tactagctct
     5341 ctctgtatat cgcgaattaa ctcagactct ttgaaagggc catatatctg gaaatgatat
     5401 tcttgttcat gataagacac atgctgtgcg aagcaatctg atagtattac cggatcatta
     5461 gatattcgta tctcattaac tacatcatca atcctttttt caacagcaat ttgtaaccct
     5521 ctattgatgt atttgctacg ggtatattct gaattaatcc ttgttttcgg gctgttgtca
     5581 tacttttcaa tatcttttga catattggct actgtgcggg tagcaagatc aattacatat
     5641 tttagctgat tttctccatt aattttactc tttttgccat aaagataaaa aatacacatc
     5701 agctcattac ttttgataaa tggaaaattt tgctggccat ttataaattc agcaatacgt
     5761 tttgaaatgt cctctgggag gatcatcccc atatatgagt cgaccgctat gctcatatgt
     5821 acatatctat cgttaaatta tcaattatat gaacagcacg tttatactag gatagttgac
     5881 atagagtgaa aatacatgac atcagcagtg gatactacta aaactattta cattatatta
     5941 catgggaaga aagatttctt tgagcaagta aaagaaaagc ttgtcttaaa agggttcgaa
     6001 aaagagaaga tgcagaacgc acatcttgac aaggcaggaa atccaggtga atatgttgca
     6061 atgatttggc ctccaatggc tccaaaagaa atccttgtca atgagatcac agaattgcca
     6121 agtaaaggcg gaaaaaatgg agaacgtggt gaaaatagag gtatgggagc atgggagaat
     6181 gtgggacaga ag
//
LOCUS       DASQSJ010000330         2254 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_196911, whole genome shotgun sequence.
ACCESSION   DASQSJ010000330 DASQSJ010000000
VERSION     DASQSJ010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196911"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..820
                     /locus_tag="VE223_06560"
     CDS             <1..820
                     /locus_tag="VE223_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4921 family protein"
                     /protein_id="HZC21288.1"
                     /translation="WCVRVFESSDPAVNTKSTNSYTDKPLYSEPAYGYHLIVVASPHH
                     KEKLWQISIDQWANVLLVIQDRVRWLYTKKSVTYVSIFVNSGQIAGTRVDHPHLNLVT
                     FSTIPPTIELEADASHRYMNENGNCPACAIISIESNGPRQILSTDSFLAFSPWAATYP
                     YEFWIYPKRHTTAFSRITQKELSDLALMLRATLGGMSKALDEAAFNLVFHLSPEKKNS
                     RQIHWHIEVYPQLNTWSGLERGFGVYLNHVQPEKAAEVLGSACRKELAGLVGIT"
     gene            875..1324
                     /locus_tag="VE223_06565"
     CDS             875..1324
                     /locus_tag="VE223_06565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21289.1"
                     /translation="MARLETWISLASLGMAVMFVALMISFYLFLEGQDKKGPGIYVEP
                     EGILIQIISISGVPSLILAGIIFGFQKTQQIIYTGIILITAGIVLISGMAFAATILPN
                     ISSNYRVVGIDSVPYIFIIGGIFVVCLGCYLVNSSKKYRRNLEDEIH"
     gene            1321..>2254
                     /locus_tag="VE223_06570"
     CDS             1321..>2254
                     /locus_tag="VE223_06570"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HZC21290.1"
                     /translation="MKKYNQQVEIDVSRNILPIKIYTGLLSKTFNMAKKRSSPILSIV
                     IGTKPDFYKQAPLVVEAIKEKIPVFVIDTGQHFDELIGFGIKEFELQNSVACNLQIRG
                     DLMEKASELIIKFGSFGRYCTNHYGLDSQLLPIVHGDTLVAGIAPLAWVFGMGQKVGQ
                     NEAGLRSMSPKAMKNLKIFEDPDKLTIEKFINAQFEGKWFLAREEPFPEQIDTWICSA
                     GTQYFFAPTQLNKDNLVREGYPEEFIHVVGNSVVDAIDLKRKAVRSNESIFNIYPKLE
                     YGEWIRIDIHRRENLTPHRFHSIVKGIVSLVKDTE"
BASE COUNT          727 a          403 c          469 g          655 t
ORIGIN      
        1 ctggtgcgtc agggtatttg aaagcagtga cccggcagtc aataccaaat ctacaaattc
       61 atacactgat aaacctctct atagcgaacc agcgtatgga tatcacttaa ttgttgttgc
      121 ttcgccacat cataaagaga agctttggca aatttccata gaccaatggg ctaatgtatt
      181 gttagttatt caagataggg ttagatggct ttatacaaaa aagagtgtca cttatgtttc
      241 tatttttgtt aatagtggac aaatagcagg tacaagagtt gatcatcctc atttgaatct
      301 tgttacgttt tctacaattc ctccaacaat agaattagag gctgatgctt cgcacaggta
      361 tatgaacgaa aatggaaatt gtcctgcttg tgctataata tctatagaat ccaatggccc
      421 aaggcaaatt ttaagtaccg atagcttcct tgcattttct ccctgggctg ccacctaccc
      481 atacgaattt tggatttatc caaaacgaca tactacggca ttctcgcgga ttacccaaaa
      541 agaactcagc gatctggcac tcatgctccg tgccacatta ggaggaatgt ccaaggcatt
      601 agatgaagct gctttcaatc tagtttttca cttatctcca gaaaaaaaaa atagccgtca
      661 aatacactgg catatcgaag tttatccgca actaaacacg tggtctggcc tagaacgagg
      721 ctttggagtt tatctcaacc atgtccaacc agaaaaagct gcagaagtat taggttcggc
      781 atgcagaaaa gagctggctg ggcttgttgg tatcacctag accatatggt ttatttataa
      841 acaatgaaga aacaagcttg ggaaacgttg ttacatggca agattagaga catggatatc
      901 acttgcatcg cttggaatgg ccgtcatgtt cgtagcgctg atgatatcct tctacttgtt
      961 tctggaagga caagataaaa aaggtccagg aatatatgtg gaaccagaag gaatactgat
     1021 tcaaattatt tccatttctg gtgttccaag tttgatactc gcaggtataa tcttcggatt
     1081 tcaaaaaacg cagcagatta tatacactgg cataatatta atcactgcag gcattgtgct
     1141 gatttcaggt atggcatttg cggcaacgat actaccaaac ataagtagca attacagagt
     1201 cgtgggcatt gacagcgttc catatatttt tattattggt ggtatatttg tagtctgctt
     1261 aggatgctac ttggttaaca gctcaaaaaa atatcgccga aatctggaag atgaaattca
     1321 ttgaaaaagt ataatcaaca agtagagatt gatgtatcga gaaatattct tccgatcaaa
     1381 atctatacag gtttacttag caagacgttt aacatggcaa aaaaaagaag tagtcctatt
     1441 ttatcaatag tcataggtac taaaccagat ttttacaaac aagctcctct tgttgttgag
     1501 gccatcaaag aaaagattcc agtatttgta attgatactg gtcagcattt tgatgaacta
     1561 ataggatttg gtattaaaga atttgaattg caaaattccg tcgcctgtaa tctccaaatt
     1621 cgtggtgatt tgatggaaaa ggcaagtgag ctaataataa aatttgggtc atttgggcga
     1681 tactgcacaa accattatgg tttggattca cagctacttc cgatagtcca cggagatact
     1741 ctagttgctg gaatagctcc tttggcttgg gtctttggga tgggacaaaa agtggggcag
     1801 aatgaggcag gtctaagatc tatgagtcct aaagcaatga agaatttgaa aatatttgag
     1861 gatcctgata aattgaccat tgagaagttc atcaatgctc aattcgaggg taaatggttc
     1921 ctcgccagag aggaaccatt tcctgaacaa attgatacct ggatttgctc ggcaggaacg
     1981 caatactttt ttgcaccaac gcaattaaac aaagataacc ttgtgagaga aggttatcct
     2041 gaagaattta tccacgtagt gggaaattca gttgttgatg caatagattt aaaacggaaa
     2101 gcggtaagat caaatgaaag catttttaat atttatccga agctagaata tggagaatgg
     2161 ataagaattg acatccatcg tagggagaat ctcactcctc atagatttca ttccatcgtc
     2221 aagggaattg tgagcctagt gaaagataca gaac
//
LOCUS       DASQSJ010000331         2608 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_257104, whole genome shotgun sequence.
ACCESSION   DASQSJ010000331 DASQSJ010000000
VERSION     DASQSJ010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257104"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            519..1712
                     /locus_tag="VE223_06575"
     CDS             519..1712
                     /locus_tag="VE223_06575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21291.1"
                     /translation="MMSIFGADLPEWFHGTYWLHKILQMDGFLTLLIMGIGYMIVPRF
                     RNIHLASVKLAYISFILIVISLIFGFIQTVADNDKNFSTWIIISRLSGVTIFVAIVFW
                     TLRIRPKLLGLSDYFITLCLLALIIVNVIELSGYRHAGSLTQFQLWLLFPVLMIFGIE
                     YKTLPSFLGFIRPRKTSAIASLVFLSLCIILGLASIMFTNVLLLSIIFNVTLFASVLT
                     FARAIYALGGFDNREILRLIQGEKKARYNFTVIHIRVSFLFLFIGISTAILFSLVGQY
                     FVFYDLVIHSIAIGFIGLTIALYLPLMLPPITGKIIHFTNFNRIPLVLIIISLCIRAV
                     GDFILAQPSSFLEHSGGFSPQIFTYSFGLSGWFVVAAMLVFVMMIHKSMKQVEPLPSS
                     NTNLF"
     gene            complement(1699..1872)
                     /locus_tag="VE223_06580"
     CDS             complement(1699..1872)
                     /locus_tag="VE223_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21292.1"
                     /translation="MILLIGTVERSYRTKLGLTATIPSHIRLNKRPRELIAHISEVTE
                     VTDIFSIGEFRKD"
     gene            2050..2493
                     /locus_tag="VE223_06585"
     CDS             2050..2493
                     /locus_tag="VE223_06585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21293.1"
                     /translation="MHITTATTLAIFAIVMAIALVTAGSLAVNAEAVKKTKKTSTHRT
                     SSRTSGGSTGTITLGGGTSTTGTTKSTSTSKTSTGLSKFISCVRALPTLTRAEAVNCY
                     NTVFGTGSSAGSTAGAGTSLGHTGIGSGTGSSAGSTAGAGTIPGY"
BASE COUNT          749 a          523 c          490 g          846 t
ORIGIN      
        1 gtatatagat ctctcttctt taatatatcg ttgactatac cgccttattt actattagac
       61 catagttgtt gattgacgaa ccacgatacc gctcacacat taaaaaacaa ggtcggatta
      121 ttagaatcgg acaattgata acatgccaca ccgccatagt ttccttgggc tatcatcacc
      181 aacactattc tcggagtaat ttgaatgcat gtttgccagt cactgttctg tttatcctgt
      241 ggccaattct atcatggctt caatagatct gtatatctag atcctctaat ctatgaggac
      301 tggcgcccga ataactggag gcgctggtat gagattttca aaggactgaa acccttcata
      361 tgatcttgac acttgtaacg ataaaataga tctgaaagaa gaagtctgaa tagaataaat
      421 atttgcctaa tactatcaat tacagttttg ttagtaaacc atttataatt acagctgtaa
      481 ttcttttatt cctgggaaca tccattggtt caatatggat gatgtcaata tttggcgcgg
      541 atctaccaga gtggttccat ggtacgtatt ggcttcacaa aatactgcaa atggatggct
      601 ttctaacatt gctgatcatg ggtataggtt atatgatagt tcccaggttc agaaatatac
      661 atcttgcctc tgtaaagctt gcgtatattt ctttcattct aatagttata tctttgattt
      721 tcgggttcat tcaaacagtt gcagataacg acaaaaactt ctcaacatgg atcataattt
      781 caaggctttc tggagtaact atctttgtag caatagtctt ctggacattg agaatcaggc
      841 caaagctctt ggggctgtca gattatttca ttactctttg tctacttgct ttgataattg
      901 tcaatgtcat tgaattatca ggatacagac atgccggctc acttacccaa tttcagttat
      961 ggctactctt tccagtactc atgatttttg gaattgagta caagacattg ccatcttttc
     1021 ttggattcat aagaccaagg aaaacctcag ctattgcatc attggttttc ctgtcgcttt
     1081 gtataatttt aggtcttgca tctattatgt ttactaatgt gttattactt tcaataattt
     1141 ttaacgttac attattcgca tccgtattga cattcgccag agcaatttat gcacttggag
     1201 gatttgataa cagagagatc ttgcgtctca ttcagggaga aaagaaagct cgctataact
     1261 ttaccgttat tcatattaga gtatcattct tgtttctctt tatcggcatc tctacagcta
     1321 ttttattcag tttagttggt caatactttg ttttttacga ccttgtaatt catagcattg
     1381 ccataggatt cataggactt accatcgcat tatatctgcc gctaatgctt ccaccaataa
     1441 ctggtaaaat aattcacttt actaatttca atagaattcc tttggttttg attattatat
     1501 ctttgtgtat tcgtgcagtt ggagatttca ttctagcaca accgtcatct tttttggagc
     1561 atagtggggg cttttcacct cagattttta cgtattcctt cggcttatct ggttggtttg
     1621 tagtagcagc tatgctagtt ttcgtcatga tgatacataa atctatgaag caagtcgagc
     1681 ccttaccgag cagcaatact aatcttttct gaattccccg attgaaaaga tgtctgttac
     1741 ttctgttact tcagatatat gtgcaatgag ctctctaggc cgcttgttaa gcctgatatg
     1801 tgaaggaatt gttgctgtaa gtcccagttt tgtcctatag gatctttcta cggtgccaat
     1861 tagcagaatc atcagtattc caacttctag tttagatatt ttcctcttat agaatagacc
     1921 tgtttatatt atgatgacaa gtgagagaaa actacaacct aacgaaccaa attatcttct
     1981 tctttttgta tacaggcggc ttaaccttgt taagcaatat ctataataga tgataagata
     2041 ccttcgtcta tgcacataac aacagcaaca acattggcaa tctttgcaat tgtcatggca
     2101 atagcattag taacggcagg tagccttgct gttaatgctg aagcagtaaa gaagactaag
     2161 aaaacatcga cacaccgtac aagcagccgc acatctggcg gcagcactgg aaccatcacc
     2221 ttaggcggcg gcacctcaac aacaggcaca accaagagca caagtacaag caagacctca
     2281 acggggttga gtaagttcat tagctgtgta agagcactac ctacgttaac tcgagctgag
     2341 gcagtcaatt gttataacac tgtcttcggc acaggtagca gcgccggaag cacagcgggt
     2401 gcaggtacaa gtctagggca tacaggtata ggttcaggga caggtagcag cgccggaagc
     2461 acagcgggtg caggtacaat accaggatat taacaggtaa ttgactagat cactgtctct
     2521 tactacccgt tagagcaagg caaataagaa ctacaaaaac atcgacgatc gatcttagct
     2581 attttttgca actcagactc agactcct
//
LOCUS       DASQSJ010000332         2084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_257157, whole genome shotgun sequence.
ACCESSION   DASQSJ010000332 DASQSJ010000000
VERSION     DASQSJ010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257157"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VE223_06590"
     CDS             <1..186
                     /locus_tag="VE223_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21294.1"
                     /translation="YEFVKHAKNIDSQVKVILMSAFEIQEKEFHNMLPDTMVDGFLQK
                     PFSIGQLNDMVEKISQS"
     gene            278..859
                     /locus_tag="VE223_06595"
     CDS             278..859
                     /locus_tag="VE223_06595"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HZC21295.1"
                     /translation="MAQNLTNCQINDVLHHMGEAEYGAHYIIIYPSLHRLRELYSNYV
                     LKKIEENNEIVLVNPFYETTDSVRRALSEKYNHRVNAISKYENEESLMIIDSLEEYLG
                     DQPLLYVKKGLANYSKMGKKGLSVLADMGAYHHKSRDKDLVDYESSLPRKYHVPMKGF
                     CLYHQKDFDQFSDEQQQKLIDSHGKALNIIEVL"
     gene            complement(1352..>2084)
                     /locus_tag="VE223_06600"
     CDS             complement(1352..>2084)
                     /locus_tag="VE223_06600"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC21296.1"
                     /translation="VVQLDYNKPDTLSSALRDIDKLFLLTPFQSNMVDLTSNLVNEAK
                     NAGVKYIVKQSVLGADAEPSITPSRLHRQSEKVIEESGIPFTFLRPNFFMQNFVTFYS
                     SFIKTQGAFYVPAGDAKASFVDVRDIAAVAVQALSKNGTANHIRKAYDITGGEAISYG
                     QAAEILSKEIGKKVNYVNISDEDARKGMKDMGADEWTINSMIELFGITRAGYLSEISS
                     AVEQVTGNKPIPFSQFARDYAGAFK"
BASE COUNT          652 a          380 c          375 g          677 t
ORIGIN      
        1 tatgaatttg taaaacatgc taagaacatt gattcacaag taaaggtgat acttatgagt
       61 gcttttgaga ttcaagaaaa ggaatttcat aatatgttgc cagataccat ggtagatggc
      121 tttctccaaa agccattttc cataggacag ctaaatgata tggtggagaa aattagccaa
      181 tcctaggatc aatttcttta atatgatgat agtaactatg ggataaaact gtaatagtta
      241 ttatattgtt tgtgcaatgt taggaggttt acccgtagtg gcacaaaact taacaaactg
      301 tcaaattaat gatgtactgc atcatatggg tgaagcagaa tatggtgctc actacataat
      361 aatatatcca agtttacata gattaaggga gctttattct aactatgtat tgaagaaaat
      421 tgaagagaat aatgaaattg tccttgtaaa cccattttat gaaactacgg attctgttag
      481 acgggcactt tctgaaaaat acaatcaccg tgtgaatgcc atatccaagt atgaaaatga
      541 agaatcgctt atgattattg attctctaga ggaatatcta ggtgatcagc ccctgttata
      601 cgttaaaaag ggtttagcga attattctaa aatgggaaag aaaggtcttt cagttctagc
      661 tgatatgggt gcatatcacc ataaatccag agacaaagac cttgttgatt atgaatcatc
      721 cttgccaaga aaatatcatg tgcccatgaa aggattttgc ttgtatcatc aaaaagattt
      781 tgatcaattc tcagacgaac aacagcaaaa gttaattgac agtcatggca aggctttaaa
      841 cataatagaa gtattgtaaa attgatcgag cagacacaaa agctataaca ccatcttgga
      901 taagtgttca tattgtaaga tgaataaatt taacgctcag ctacacatat aagacatgag
      961 tctccagcta ttttctagcc ataagaaaga cggaagtcta tccaatcctt tagtgcagaa
     1021 taataagctt taggtgttat gaaggtatat tatacctctg gctcatcagc ataaactagc
     1081 aatttagccg ctataacttc cctgcctcct tcctcttcat tggttatagg agatacgtgt
     1141 tttcgttgga aatggtccct gttcctaatc taaacccgcc tgtagccatt gaacagacta
     1201 taggctttat cctcctgtca ggatgttcaa ctaccttacg tatttttggc aatccttttg
     1261 atatcttctt ccaatttaga gttaaatcat tcacttcaca aagtagtttg ggcgcctata
     1321 gtagttctta agagtacctg gggctaaaag actatttgaa agctcctgca taatcccttg
     1381 cgaattgact aaatggtata ggtttattgc ctgtaacttg ctctactgca gaagatattt
     1441 ctgataaata gcctgctctg gtaattccaa acaattcaat cattgagttt atagtccact
     1501 catctgcacc catatctttc attcctttac gagcatcttc atctgatata tttacgtaat
     1561 ttactttttt tcctatttcc tttgaaagta tctccgctgc ctgtccatat gagattgctt
     1621 cgcctccggt aatatcatat gcctttcgta tatggttagc tgtgccattc ttactaagag
     1681 cttgtaccgc tactgcggca atatcacgaa catcaacaaa actagccttg gcatctccag
     1741 ctggcacata aaaagctccc tgagttttta tgaaactact gtagaaagta acaaagtttt
     1801 gcataaagaa gtttggtctc aaaaatgtaa atggtattcc ggattcttct attaccttct
     1861 cagattgtct gtgcaaacgg ctaggtgtga tcgatggttc ggcatcagct cctagcactg
     1921 attgttttac aatatacttg actccagcat tctttgcttc atttactaaa tttgatgtca
     1981 ggtctaccat gttagactga aatggtgtaa gtaagaagag tttgtctata tctcttaaag
     2041 ctgaagataa agtatctggc ttgttatagt caagctgtac tact
//
LOCUS       DASQSJ010000333         2035 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_516529, whole genome shotgun sequence.
ACCESSION   DASQSJ010000333 DASQSJ010000000
VERSION     DASQSJ010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_516529"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..623
                     /locus_tag="VE223_06605"
     CDS             <1..623
                     /locus_tag="VE223_06605"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HZC21297.1"
                     /translation="TQGIVGGQQQITNASSPNKLSLLSLTSQGSPYQGSISAPVTVID
                     FSDFQCHLCARYVKNTEPMINKTYIQTGKVALVFKHLPNRGFDSMPAALAAQCTQDQG
                     KFWQFHNLLYEKQGPIDSGWANRDNLKKLASQISGLDMHKFDSCFDNQKYKSFIENDI
                     ALAHSFGFTETPSFIIVKSDGSNPQKIEGPQPFPAFKAIIDKELAY"
     gene            634..1197
                     /locus_tag="VE223_06610"
     CDS             634..1197
                     /locus_tag="VE223_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21298.1"
                     /translation="MQGEEKMKPINDNNPLRVLTRLKTTIPLLFGTVFSNRLYIAIAA
                     AVFTAFWIIFNVFDQLLFFSPIVTFYLPDDAISGFVLTNITSILMGILVGMNVYVIRN
                     SKLRLDKSMVSGSILAIASSACASCSSIGFLVISIFGGIGMVATDFLTNNQTPLRIAS
                     ICILVWALYSVHNRITKSCNNMGTMPS"
     gene            complement(1222..1941)
                     /locus_tag="VE223_06615"
     CDS             complement(1222..1941)
                     /locus_tag="VE223_06615"
                     /inference="COORDINATES: protein motif:HMM:NF013209.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HZC21299.1"
                     /translation="MDKNKDEDLLSGTKKMILNLLLDGSKTTGEISDKLKIQKSAIRI
                     HLESLQTQQAVRSYFKMERLGRPTKAYEITESGRELFPRKYDMVLSLLIKKIEEVEGH
                     DYVKKMIRSIADSIASDIRDRIKKSNNLSNLEESLNILNSFSNEMGFMSSLHREDDGT
                     YSLISRNCAVHKVATSHQDAICHGLHDRMIEKSLDGKINPDVQLKECIALGDNYSRHV
                     ITTTTTTTTRNMDKDKYKLKS"
BASE COUNT          609 a          370 c          347 g          709 t
ORIGIN      
        1 aaacgcaagg aatagtaggg ggacaacagc aaattacaaa tgcatcttct cctaacaaat
       61 tatcattgtt aagtctaaca agtcagggct ccccatacca aggaagtata tctgctcctg
      121 tcactgttat tgattttagt gattttcaat gtcatttgtg tgccagatac gtaaaaaata
      181 ctgaaccaat gatcaataaa acgtatattc aaacaggtaa agttgctcta gtctttaagc
      241 atcttccaaa tcgcgggttt gattcaatgc ctgcagcttt ggcagctcag tgtacccaag
      301 atcaaggaaa attctggcag tttcacaatt tgctttatga aaaacaagga ccaattgatt
      361 caggatgggc aaacagagat aatttgaaga aactcgcatc ccaaatatct ggacttgaca
      421 tgcacaaatt cgattcatgt tttgataacc aaaagtataa atcatttata gaaaacgata
      481 ttgctttagc acattccttt ggatttacag aaacaccttc ctttataata gttaaaagcg
      541 acggctcaaa tccacaaaag atagagggac cacagccttt tccagcattt aaagcaatca
      601 ttgacaaaga acttgcatat tgaaagctaa tgtttgcaag gagaagagaa aatgaaacct
      661 attaacgata ataatccact cagagtatta acgagattga agacaacgat accactcctg
      721 tttggaacgg tattctcaaa tcgtctttat attgctatag ctgctgctgt attcaccgct
      781 ttttggatta tttttaatgt atttgaccag ctgctatttt tttcacctat agtaaccttt
      841 tatctgcctg atgatgcaat atcaggattt gttctgacga atataacttc tatactgatg
      901 ggaatattgg ttggcatgaa tgtatatgta attaggaatt caaaactcag attggataaa
      961 tcaatggtgt caggttcaat actagctatt gcttctagtg cttgtgctag ctgctcttca
     1021 ataggctttc tcgtgatatc catatttgga ggaattggta tggttgcaac ggactttctt
     1081 acaaataatc agactccatt gcgaatagca tctatatgta ttctcgtttg ggcattatat
     1141 tctgtacata acaggattac aaagagctgc aataatatgg gcaccatgcc ctcttaatat
     1201 tatattagta ctagtagctg cttaggattt taatttatat ttatctttat ccatatttct
     1261 tgttgtcgtt gttgttgttg tagtgataac atgtctacta tagttgtcac caagagcaat
     1321 acattctttt agttgtacat caggatttat ttttccatct aatgattttt ctatcattct
     1381 atcatgaagt ccatggcaaa tggcatcttg atgactagtt gcaactttat gtacagcaca
     1441 attgcggctt ataagggaat aagtaccatc atcttctctg tggagggatg acataaagcc
     1501 catctcattt gagaatgagt ttagtatatt caatgattcc tctaggttac tcagattatt
     1561 acttttcttg attctgtctc gtatatcaga tgctatacta tccgcaatag atcttatcat
     1621 tttcttaacg tagtcatgtc cttctacctc ctcaattttt ttgatgagaa gtgacaaaac
     1681 catatcatat tttcttggaa atagttctcg tccgctttct gttatctcat atgcttttgt
     1741 tggtctgcca aggcgttcca tcttaaaata tgacctaact gcttgctgcg tctggagcga
     1801 ctctaaatga attctaattg cactcttttg tatctttagc ttgtctgaga tttctcctgt
     1861 agtctttgag ccatcaagca gtaagtttaa tatcatcttt ttcgtgccag acaaaaggtc
     1921 ctcgtctttg tttttatcca atctaaatta gcactatacc atgtcatctg gataaaatgt
     1981 ttattatgta ttatagtcta ggtgaactaa tagtactttt aagtacttta aaata
//
LOCUS       DASQSJ010000334         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_357781, whole genome shotgun sequence.
ACCESSION   DASQSJ010000334 DASQSJ010000000
VERSION     DASQSJ010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357781"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..230
                     /locus_tag="VE223_06620"
     CDS             48..230
                     /locus_tag="VE223_06620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21300.1"
                     /translation="MGLAAALLYLSSRKTKDDSITQSQLAIAAGVSEVTVRNRMKELL
                     NVNSLSQYGLVIAILK"
     gene            344..619
                     /locus_tag="VE223_06625"
     CDS             344..619
                     /locus_tag="VE223_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21301.1"
                     /translation="MTGAGIILYLTYLQSYMLAVLTLAVFAPLIGFHFLMARLSESED
                     YCTSTTCIRRSRFSNTIAGTEMPQINYAQPSQSNKAYTFGDMDSGKY"
     gene            complement(1038..1361)
                     /locus_tag="VE223_06630"
     CDS             complement(1038..1361)
                     /locus_tag="VE223_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21302.1"
                     /translation="MQALECNEIWNLYNGVSLCYSCHKTLEEIIINLVLVLGLTTYDD
                     DHDDVLQDCHWLYFVKLLSQDTNLDGSGQTILRLENFKSTNGPNVHLYLATDKAASNL
                     IDLED"
BASE COUNT          719 a          384 c          385 g          713 t
ORIGIN      
        1 cctaaacctt cttcttttgc tttgcttctt gcatattcta tagatccttg ggacttgccg
       61 ctgcattact ttatttgtca tctagaaaaa caaaagatga cagtataacg caaagccaac
      121 ttgctatagc agcgggagtt agtgaagtga ctgtaaggaa cagaatgaag gaattattga
      181 atgtaaattc tttatcccaa tatggattag taatagctat actaaagtag atgtggatgc
      241 aatttggaaa aatgtattta atatcagaac acaaatgtat accatgaaca tgaatttaaa
      301 atatattgcg ttacaactat gcacctgcac gtggatcgaa ataatgacag gtgcaggaat
      361 aattctgtac ctcacttatc ttcagagcta catgcttgca gtcttaacat tggctgtatt
      421 tgcacctctt ataggatttc attttctaat ggctagatta tcagaatctg aagactattg
      481 tactagcaca acatgtatca gacgctcacg cttttcaaat actattgcag gaactgagat
      541 gccacaaatc aattatgctc agccatcaca aagcaacaag gcttacacct ttggtgacat
      601 ggatagtggt aagtactgaa gtcttattgg gctattccat ttctggtact agtttgaatc
      661 ctgcaaaaaa gtttggtcat gcgctagttt taaatttatg gcatagccta tggatatact
      721 ttacagctcc tataattgga gctttactag ctgcaattgc atatcgtgcc aaaatatttg
      781 gaactatgga acttgtgact cgaaagctat ttcacactcc ctcttataga tgcatattct
      841 tatattgtaa ggaaaggcat tgaacctctt ctaactagtt atatcaagtt tgaagaaaga
      901 ttttctctta agttatgtct ttagctgtgc acttccaaac agtacagaga aatccttaca
      961 ccatatcaaa gccacattgt attttgccaa gtcagtccca acaggtatat tgtaattttg
     1021 atttccgtta tttgctttca gtcttcaaga tctattaaat tggaagcggc tttatcagta
     1081 gcaaggtaaa gatgaacatt aggtccattc gtagatttga agttctctaa cctgagaata
     1141 gtttgtccac taccatctaa gttggtatct tgtgatagca acttcacaaa atacaaccaa
     1201 tgacagtctt ggagtacatc gtcatggtca tcgtcgtatg tcgtcaatcc aagaacaagg
     1261 actaaattga taattatctc ttctaaagtt ttatggcagc tataacacaa agatactcca
     1321 ttatacaaat tccatatttc gttacattct aacgcttgca ttacagctaa atccccgagt
     1381 taaagtggag tttacctgca gatttaaaga attcaaccat gttccattac cattgtcatg
     1441 gttactagta ttactacgct catgatggaa cttgtgatgg ttgcgaaaaa tagagataga
     1501 gtcaagcctc ctatcgaaaa agatatggag ggtctctatc tttaaggatt tgataactat
     1561 gtcttgttta tatgttaaag ctctatcttg ggagagggag tatagttatt gtaactttat
     1621 cttgtctggt gtaatgatac tatagtagtt gccaatttga tttgaattga attgaattat
     1681 cacctaaaga atacaaaaat aagtagcatg aacggaagca agttactggg ttttttattg
     1741 ttcatgtttt cattgttctc atcttggagg ttaattggag aacatcactc taaaaagaaa
     1801 gacaatgatc gatactaaaa gaattgtcaa tactaagaaa aatacacccc ttgacatcat
     1861 ttacagatgc gatcagatga agtaacctgc tcttattaag aattgtccac tttggagcga
     1921 tgatcaaaat aagtcagtgg ggcacacgat aaacaataac aagatgataa ataatacaca
     1981 ttggtattat tgtctcatac aaaataatat taacttctca ggtttgtcat acttttgagg
     2041 tatatgcata tcatatggct agacgaacta acaaatcgat agcagaaata ttaactccaa
     2101 tagaagcatc atcatctaat actcatgata atgatttatt gtcatcatca tttgaaagaa
     2161 aaatcacttt agcaaccgag ggttttacta ctagccggtt t
//
LOCUS       DASQSJ010000335         5341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_357904, whole genome shotgun sequence.
ACCESSION   DASQSJ010000335 DASQSJ010000000
VERSION     DASQSJ010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_357904"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..461
                     /locus_tag="VE223_06635"
     CDS             138..461
                     /locus_tag="VE223_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21303.1"
                     /translation="MISYINFPVFETIDIKEVSDIRNAVDRMVEAYEYLNKSANFSYR
                     LLLPKGEKTNEKARKIGFIVQAEFLLALKKKQLKLNVREIRYMHDETHYGWILANPEI
                     IGALR"
     gene            complement(551..1267)
                     /locus_tag="VE223_06640"
     CDS             complement(551..1267)
                     /locus_tag="VE223_06640"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HZC21304.1"
                     /translation="MSLSSLWPTWIIEIRSMQLMVLVIIFVMLTTLVASHLTSCFDNF
                     ITTYFKSIQTTGSVDAIMMVITSFGDVFSLVVVATILTLVRRTRKIGMIFLVAIVVIA
                     ILVLYIKPLIGRPIPPYRFKPSLQLPNHFVLEDDSLVPPSRDLSYPSNHIAIATAFAF
                     IVGFGLNRKSRIAGLLIWSFPIIIALTKLYILQHYLTDVLSGFILGLIVSITLSNIMG
                     LDKPFLMSRFKGKEDTMKTK"
     gene            complement(1739..2167)
                     /locus_tag="VE223_06645"
     CDS             complement(1739..2167)
                     /locus_tag="VE223_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HZC21305.1"
                     /translation="MSDDIYREIILDHYRNPRNKGKLSNADVSIHDNNPLCGDEIDIH
                     LKVEEDKIKDIKFEGRGCAISQASASMLTEMIMGKSLNTIKDLTKEDILENIGLINLG
                     PARIKCALLSLKVLKLGMIKYYADKDPPSAMKLRDDTKLY"
     gene            complement(2164..3408)
                     /locus_tag="VE223_06650"
     CDS             complement(2164..3408)
                     /locus_tag="VE223_06650"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HZC21306.1"
                     /translation="MQKATLNVSRIRQDFPILKRKIKGNKTLVYLDNAATTQKPIPVI
                     NAICNYYMNYNSNIHRAVHQLAEEATLEYEKTREKIAKFINARSTDEIIFTRNATEAI
                     NLVSYSWARTNVEKDEKVVLTEIEHHSNIVPWQILTQEKGAKLEYVGIDDKGYLNIED
                     YKKYIQGDKVKLVSVSHMSNVLGTIMPVNEIIKTAHQKGIPVLIDGAQSVPHMPVDVR
                     DMDCDFLAFSAHKMLGPTGVGVLYVKREILNEMPPFIGGGDMIREVHKYDTRYNDLPY
                     KFEGGTPNIADVIAFGAAIDYLNKIGMDKVREHEMDVTNYAINAIHDLKGIIIYGPSD
                     VNNRGGVVSFNIGDIHPHDLATIMNDHGIAIRSGHHCAQILMERLDVAATSRASFYIY
                     NTKEEVDAFVNALNEARRLFRI"
     gene            complement(3420..3737)
                     /locus_tag="VE223_06655"
     CDS             complement(3420..3737)
                     /locus_tag="VE223_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HZC21307.1"
                     /translation="MTEWIKVCETKPLKNGDILEFDYGDKNILISKAGNKVYATDRIC
                     THAYADLSTGFMNENEKTITCPLHMSIFKLEDGTPQNLPAEKPLKTYRVKIQDNWVYI
                     LME"
     gene            complement(3756..5174)
                     /locus_tag="VE223_06660"
     CDS             complement(3756..5174)
                     /locus_tag="VE223_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HZC21308.1"
                     /translation="MVVLSSVSNDDIKSLIDQNKEPSWFGEIRENAFSKYTNLPPEVS
                     PLYKKYSDINLLRPEHIYMPDRIVKYEPYEALKDRLDELEEGTSILRIGSSINRIFIP
                     EKISKQGVVISDLRDAVTKYEDLIKKQLTINQINYDEDRFLALEAAAFHSGLFIYIPK
                     NIIIEDPIRIVNSLADDGTSSITRNIIIGDVGSKATVVQEIYSPSKAKKNNVQQAYFE
                     LFECHVNPIAHLEMVTLQAMSGNTLNFSNKKAFIERDGKMSWYLGMFGTQLSRYKTDS
                     IMKGAGSSAEDVEIIFGIENQSFDVTSNLIHHGRNSRGRVLVKSVMKDTSKSLFKGMI
                     KIGKEAKAAESFLAGHAILLDKGAKSDAIPGLEIETNEVKATHSASVAQLDEAQIFYL
                     MCRALSREGAKREIVNGFLEPLSRKMGPTIRAWVNYLIENKWSGKPLMLKADEAMNQI
                     LEVEKSRYREAQDIFEKHYKYR"
BASE COUNT         1603 a         1008 c          894 g         1836 t
ORIGIN      
        1 atcctaagtt aagggtacag aaccatcata caataaacat gactatcata aatcatctat
       61 agacgaagga agacatgtaa gggaagaatt tattaaaaaa tttatctgca ataaatttta
      121 ttcattactt tggaacattg atctcgtaca ttaattttcc tgtatttgaa actattgaca
      181 ttaaggaagt ttcagatatt cgtaatgctg ttgatagaat ggtggaagcc tatgaatatc
      241 tcaataaaag tgcgaacttc agctatcgac tattgcttcc caagggagaa aaaacaaatg
      301 aaaaggctag aaaaattgga tttattgttc aggccgaatt tttattggca ctaaaaaaga
      361 aacaattaaa gctaaatgtt agggaaatta gatatatgca cgacgaaact cattatggat
      421 ggattctcgc taatccagaa ataatcggcg cattgcgtta gcacgcaata attattggtg
      481 acagagagaa gaaaatatct gtattatatc cttttatatg ctcgtttgaa tgctgatcag
      541 atcaattcgt tcatttagtt ttcattgtat cctcttttcc tttaaatcta gacattaaaa
      601 atggtttatc taatcccatt atattgctca gggttattga aacgattaag cccagtataa
      661 aaccagatag gacgtctgta agataatgtt gcaatatata caatttagta agcgcaataa
      721 ttatgggaaa cgaccaaatc aacagtccag ctatccgtga ctttcggttt aatccaaagc
      781 caacgatgaa cgcaaatgca gttgcaattg cgatatgatt agagggatat gagaggtcac
      841 gtgaaggtgg tactaaacta tcatcttcca atacaaaatg atttggcagc tgtagagatg
      901 gcttaaatct atatggtggt attggtctcc caattaaagg tttaatatat aataccaaaa
      961 ttgctataac aacaattgca actaaaaaaa tcatacctat ttttcgggtt cgacgaacta
     1021 aagttagaat agtggccaca acgaccaaac taaaaacatc tccaaatgat gtaattacca
     1081 tcataatagc atctacactt ccagtagttt gtatagactt gaaatatgta gttataaaat
     1141 tgtcaaaaca tgaggttaga tgtgaagcaa ccaatgtagt aagcatcacg aagatgatta
     1201 ccaataccat taattgcata gatcttatct ctattatcca cgttggccat agactagata
     1261 atgacaataa ctggtcctaa ataataatgt gttttatatg ttgtgtttgg tcattagatc
     1321 tgttcgatcg acatatgatg tagagacata gattaaaaga tatttgccct gctaaaaatt
     1381 atctaaacta ttactgatta tctccttatt accgctgttt ataatatagt catattcgag
     1441 atgcttcttt catctcggtt gttatgagca taggagtaat gcagttcctg aacaatctca
     1501 aatcatccaa attaatatgt gtgtttatta gcaaatacag cctgatgaga gtgtgtaaca
     1561 taaggcaaca acagtacctt ttttcctagt ttttcgtgta aatgatgact caactcatta
     1621 tttatttaag ttgtataaat tgtatgaaat ttgccagaca ttattattga tggtcagcac
     1681 aaaaatggtc attttaacac gctactagca ttaaggagaa atttgacttc ttttagtttt
     1741 agtaaagctt tgtatcatct ctcaatttca ttgctgatgg tgggtctttg tctgcataat
     1801 atttaatcat gcctaatttc agaactttca gtgacaataa tgcgcatttt attcttgctg
     1861 gccccaagtt tatcaggcca atgttttcca gaatatcttc ctttgtaaga tctttgattg
     1921 tattcaggga tttacccatt atcatttcag ttagcatgga tgcacttgcc tggctaattg
     1981 cacaacctcg tccctcaaat tttatatctt taattttatc ttcttcaact tttaaatgaa
     2041 tatcaatttc gtcaccacaa agtggattat tgtcatgtat acttacatct gcatttgata
     2101 atttgccctt atttctagga tttctataat gatcaagaat aatttctcga tatatatcat
     2161 cgctcaaatc ctaaacaacc tccttgcttc attgagtgca tttacgaacg catcaacttc
     2221 ttcttttgta ttatagatat aaaaacttgc acgagatgtt gcagcaacat ctaatctttc
     2281 cataagtatc tgtgcacaat gatgtccaga acgaattgca attccatgat cattcattat
     2341 agtagcaagg tcatgtggat gaatatcgcc aatattaaat gataccactc cgcctctgtt
     2401 attcacatca gaaggaccgt aaatgattat acccttgaga tcatgaatag cattgatagc
     2461 ataatttgta acatccattt catgttcccg taccttatcc ataccgattt tgttaagata
     2521 atctatagcg gctccaaaag ctattacatc tgcaatgttt ggagtgccac cctcaaactt
     2581 gtatggcagg tcattatatc ttgtatcata tttgtgaact tctcttatca tatccccgcc
     2641 tcctataaac ggaggcattt cattaagtat ttctcttttg acatatagaa cacctacccc
     2701 cgttggtcct agcattttat gggcagaaaa tgccagaaag tcgcaatcca tatctcgtac
     2761 atccactggc atatggggga cagattgagc tccgtctatc aacacaggaa tacctttctg
     2821 gtgagccgtt tttataattt catttacagg cattatggtt cctagtacgt ttgacatgtg
     2881 gcttacagaa accaacttaa ctttgtcgcc ttgaatgtat ttcttgtagt cttcaatgtt
     2941 caaatatcct ttgtcatcta tgccaacgta ctccaatttg gctccttttt cctgtgtaag
     3001 gatttgccaa gggacaatat tgctatggtg ttctatctcg gtaaggacaa ccttttcatc
     3061 tttctcaaca tttgtacgag cccatgaata tgataccaaa ttaatcgctt cagtggcatt
     3121 acgtgtgaaa attatttcgt cggtagaacg agcgttgata aatttagcaa tcttttccct
     3181 tgttttttca tattcaagag tagcttcttc tgccaactga tgaactgctc tatgaatgtt
     3241 tgaattgtaa ttcatataat aattacagat cgcgttaatt acgggaattg gcttttgagt
     3301 agttgcagca ttatcaagat acacaagggt tttgtttccc ttaatcttac gcttcaatat
     3361 tggaaaatct tgccggattc tagaaacatt cagagtagcc ttttgcattg ttattattat
     3421 cactccatta agatataaac ccaattatct tgtatcttta ccctgtaagt tttcagaggc
     3481 ttttctgcag ggagattttg gggagtacca tcttctaatt tgaagatgga catgtgtagt
     3541 ggacatgtaa tagttttttc attctcgttc ataaatcctg tagataagtc agcgtaagca
     3601 tgagtacaaa ttctatctgt tgcgtacacc ttgttgcctg ctttggatat tagaatattc
     3661 ttgtcgccat aatcaaattc caaaatatcg ccatttttca acggctttgt ttcacagacc
     3721 tttatccact ccgtcatatt agatcatagt gattattacc tgtatttgta gtgtttttcg
     3781 aaaatgtctt gagcctctct gtatctagac ttttccactt ccaaaatttg gttcattgcc
     3841 tcatcggcct tgagcataag aggtttacct gaccatttat tttcaattaa ataattaacc
     3901 catgctctga tagtaggacc cattttccta gataatggtt ctaagaatcc atttacaatt
     3961 tctcgtttag ctccttctct acttaacgct ctgcacatta gatagaagat ctgtgcctcg
     4021 tccagctgtg ccacagaggc agaatgagtt gccttcacct cattagtttc aatttcgagt
     4081 ccagggattg cgtctgactt agcaccttta tctaatagaa ttgcatgacc tgctaggaat
     4141 gactctgctg ctttggcttc cttaccaatt ttaatcatac ctttaaacaa cgatttggag
     4201 gtatctttca ttacagattt aaccaacacc ctcccccttg aattccgacc gtgatgaatt
     4261 aggttcgatg taacatcaaa cgactggttc tctatcccaa atataatttc gacatcctct
     4321 gcagaagacc cagcgccttt cattatactg tcagtcttgt atcttgataa ttgtgtacca
     4381 aacattccga gataccatga catttttccg tctctttcaa tgaatgcctt tttgttagag
     4441 aaattcaaag tatttccact cattgcttgc aatgtcacca tttcaaggtg tgcaattgga
     4501 ttaacatgac attcaaaaag ctcaaagtag gcctgttgaa cattgttctt ttttgccttt
     4561 gatggagaat atatttcttg gactacggtt gcctttgagc ctacgtcgcc gataataata
     4621 tttcgtgtta tagaagaggt tccatcatct gctaaagagt tcacgattct aattggatct
     4681 tcaattatga tgttttttgg aatatatata aaaagacctg agtgaaaggc agccgcctcc
     4741 aatgcaagga atctgtcttc gtcgtagtta atttgattta tagttaattg tttcttaata
     4801 agatcctcat attttgttac tgcatctctg aggtctgaaa taacaactcc ttgcttcgaa
     4861 atcttctcag ggatgaatat tcgatttatt gaggagccaa ttcgcaagat gctagttccc
     4921 tcttctaact catcaagtct gtcctttaga gcttcatatg gctcatattt aacaatccgg
     4981 tccggcatgt agatgtgttc tggtcttaaa agattgatat ctgaatattt tttataaagt
     5041 ggagaaacct ctggagggag attagtatac tttgagaaag cgttttctct tatttcgccg
     5101 aaccagctcg gttccttgtt ttgatctatt aatgatttaa tatcgtcatt actaacggaa
     5161 gatagaacta ccaactaaca agcacctttt gtctaataaa gtaaaaaagg gagtttcttt
     5221 aatatttatc caactgagcc ttccatttca agctttacaa gtctattcag ctcgacagca
     5281 tattccattg gtaactcctt tgtaaaaggc tccatgaatc cgccgactat taaagataga
     5341 g
//
LOCUS       DASQSJ010000336         2882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_516849, whole genome shotgun sequence.
ACCESSION   DASQSJ010000336 DASQSJ010000000
VERSION     DASQSJ010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2882
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_516849"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..459)
                     /locus_tag="VE223_06665"
     CDS             complement(<1..459)
                     /locus_tag="VE223_06665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21309.1"
                     /translation="MQPLTIRSLILAGLLFSASAVPNTNNAIAAYAQLANNNNAVFLE
                     NGPNTDRPPAFLDAFWTNNLSANSSVPSNNVVKTEVGPGDGVATLAIVLVNRGRSDLT
                     GVTGYLNLPAGFKPLPGKNNGTSQSIAGFYSVVKAGNTFILYFDMNVLKQA"
     gene            complement(508..1263)
                     /locus_tag="VE223_06670"
     CDS             complement(508..1263)
                     /locus_tag="VE223_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZC21310.1"
                     /translation="MLDHNSRREDRAVVNNQPSTNPAIALKVEKLSKVFESAAGKVFA
                     LKQVNFTINKGEFVSIVGPSGSGKSTLLNMIGALDRPTFGKVFIGGVDIFSLKDHEIA
                     SMRNTMIGFIFQSFNLINRTTVQKNVEIPSIISCTSGEGKERARRALKILDVLGIKDK
                     AKFKPTNLSGGQQQRVAIARSLMNNPTIILADEPTGNLDTKTGNEVFDLLKLLSSKFR
                     RTIVMVTHNDELAEKTDRSIYIRDGRVEKEVTN"
     gene            complement(1466..2719)
                     /locus_tag="VE223_06675"
     CDS             complement(1466..2719)
                     /locus_tag="VE223_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HZC21311.1"
                     /translation="MNIKETFIFSFESLRDRKLRTILTILMVMSGSALLVAVSGIGAS
                     FTDSFNKQFSNLAPNILFISSSQQAQGGGGGPGLGGGNPTPPKITLNSAIVNRIHSLP
                     LVTDVISTYRGSVTLQSQSESKTDAILSMDPQKLTMVAPTLEFTDGSTVQPNNPAAMI
                     VAQDVANPPGDANPFLVLGQSVKATYSFVDANTGIQKEQSKNFIITGIMKETGNPTID
                     NGVVINLQAGNSLLQKSGKFDSLFVIAQSTDAVDTVEQEIRGLYGNNIGINTVKAILK
                     TIQQFTAGINAFLSSIAIVSLIVGAVGIITTLYTAVVERTREIGTLKAIGAQNRNILA
                     LFLVEALLIGIFGATLGLLSGIGFGYALSAGIRPGNGPYNPPIFLASDMVRVWIISVG
                     LSIIAGLFPALKASRLLPIAALRSQ"
BASE COUNT          809 a          581 c          531 g          961 t
ORIGIN      
        1 tgcctgcttt aaaacattca tatcaaaata caaaataaag gtatttcctg cctttactac
       61 agaataaaag ccggctatag attgagaagt tccattattc tttcctggaa gtggtttgaa
      121 acctgcagga aggtttaggt agccagtgac tccggtaaga tctgatcttc ccctattgac
      181 caatactatt gccaaagtgg caaccccgtc cccaggacct acttctgtct ttactacatt
      241 attactaggt actgacgagt ttgcgcttaa gttatttgtc cagaaagcat ccaagaaagc
      301 aggtggcctg tcagtgtttg gaccgttctc tagaaataca gcattattgt tattagctaa
      361 ttgtgcgtaa gcggcaatgg cattatttgt atttggaaca gctgaagctg aaaatagcaa
      421 tcctgcaaga attagggagc gtattgtcaa tggttgcatt atctagtcta tgtaatctcc
      481 tggtattttc cggtttactg gtatcgttta atttgtaacc tctttctcta ctcttccgtc
      541 tctaatgtaa atagacctat cagtcttttc ggcaagttca tcattatggg taaccattac
      601 tattgttctt ctgaatttgc tcgaaagcaa tttgagcaga tcaaagactt catttcctgt
      661 ctttgtatca aggttgcctg tgggctcatc agcaagaatt atagtaggat tgttcataag
      721 tgaccttgct attgcaactc tttgctgctg tcccccactt agattggttg gtttgaattt
      781 agccttatct ttaatgccga gaacgtctaa aatctttaat gcacgtctag ctctttcttt
      841 accttctcct gaagtacaag atattatgct aggaatttct acattttttt gaactgtagt
      901 cctattaatc aaattaaaag attggaatat aaagccaatc atggtattcc tcatgcttgc
      961 gatttcatga tcttttagtg aaaaaatatc tactccgcca atgaacactt tcccaaaagt
     1021 tggcctatct agagctccta tcatatttaa caaagtagat tttccactac ccgatggccc
     1081 tacgattgac acaaactcac ccttattgat tgtaaagtta acctgtttta gagcaaacac
     1141 tttacctgca gcagattcaa atactttgga aagcttttcg accttcaaag cgatagctgg
     1201 attagtgcta ggttgattgt ttacgacagc tctatcttct ctacgtgagt tatgatccag
     1261 catatttgca caatcttaac tttcactcaa tgaagtatca taaaaatgat acggaccatt
     1321 gttacgtctt aataatgttg gtctgttgct attcttcgtg tgaatgctag tacgtcatta
     1381 tccatagatg gtatttgtaa tccatgatga taagtaagac tactaactta ttgactgtag
     1441 tccgtatgag gttagcttgt catatttatt gtgatctcaa cgctgctatg ggaagcagtc
     1501 tggatgcttt taatgctggg aatagaccag caattatgct gaggccaaca gaaattatcc
     1561 atactctgac catgtcactt gcaaggaaaa ttggcgggtt atagggccca ttacctggac
     1621 gtatccctgc acttaaagcg taaccaaacc caattcctga taacaaacct agtgtcgctc
     1681 caaatattcc aatcaataaa gcctcaacta gaaaaagggc caagatattc ctgttctgcg
     1741 caccaatagc tttcaatgta ccaatttctc gtgttctttc tacgacagcg gtataaagtg
     1801 ttgtaatgat tccaactgca cctacaatta atgaaacaat agcaatgctc gaaagaaatg
     1861 catttattcc ggccgtgaat tgctgtattg tcttcaaaat agctttcaca gtattaatcc
     1921 ctatgttatt accatatagg cctcttatct cctgctcgac tgtatctaca gcatctgttg
     1981 attgtgcaat tacaaatagc gagtcaaact tgcctgattt ttggagaagt gaatttccag
     2041 cttgcaagtt gatgacaacg ccattgtcta ttgtaggatt acctgtttct ttcataatgc
     2101 ctgttataat aaaattcttt gactgttctt tttgtatgcc agtattcgca tcgacaaatg
     2161 aatatgtcgc cttaacgctt tgacctaaaa ccagaaatgg gttagcgtcg ccaggtgggt
     2221 tggcaacatc ttgagctaca atcatggcag caggattgtt tggctgtact gtagatccgt
     2281 ctgtaaattc caatgttggg gcaaccattg tgagtttttg tggatccatg gagaggatcg
     2341 catcggtttt ggattcactt tgggattgta atgttactga acctctatat gtagagatta
     2401 cgtccgtaac aagaggaagt gaatgtatcc tatttactat tgcagagttc aaagtaattt
     2461 tcggaggtgt tgggttaccg cctccaaggc cagggccgcc gccaccaccc tgtgcttgtt
     2521 gggaactaga tatgaaaagt atgttgggtg ctagattgct aaattgttta ttaaatgaat
     2581 ccgtaaagga tgcgccaatg ccacttactg caactaaaag agcactgcct gacatcacca
     2641 tcaagattgt caatatggtt ctcagttttc tatcccttaa agattcaaac gaaaaaatga
     2701 aagtttcttt aatgttcact atatttcttt tctcctatta tacttctcgt tcttccttta
     2761 tttttatctc ctccctaaat aacttatata gaaccatgta tgtatctctg acaactgcag
     2821 aaaaatatat catttccaaa ggttccatat ctttgaattc aatttggtaa ttttctatcg
     2881 aa
//
LOCUS       DASQSJ010000337         3592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_118004, whole genome shotgun sequence.
ACCESSION   DASQSJ010000337 DASQSJ010000000
VERSION     DASQSJ010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118004"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..993
                     /locus_tag="VE223_06680"
     CDS             274..993
                     /locus_tag="VE223_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis protein"
                     /protein_id="HZC21312.1"
                     /translation="MFRIVSLVLAEAALETVPKEIIDHPSVRNLSQKIGKMPGEILLD
                     RSYHHHAMIQGRLKSSWKRGRPDIIHFALMEALSTPLFFKGMLRVYVHTINDKLILIG
                     KDLRIPKSYSRFEGLIINLFKNKVIKGEQNDNDKNNVLLELHDNVSFEDLIKNIVKPD
                     KVIGLSRVGVQSTFEEVVSNNINNGNCHCAFTIGGFPKGHFSDNTTMLFNRLYSIGKF
                     RLEAHVVIARILYECEKVIFD"
     gene            complement(990..1865)
                     /locus_tag="VE223_06685"
     CDS             complement(990..1865)
                     /locus_tag="VE223_06685"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HZC21313.1"
                     /translation="MTTSSRFKNYYELTKPKIWYLLVFTTFGSALTASLLFHIPVQPL
                     TWVLLIGGVAAGSAAADTLTSYNDRDIDAIMNRTSGRPIPSGRISPKHALEFGLILAG
                     ISLIFSWFINAWAFALMIFGLLDNIIIYSKWLKRKSQANIILGGFSGGAPAMIGYVAV
                     TTQNIEIGLVMAGLVFLWIPTHIWSLALHAKKDYRRAGVPMLPAIHTEKKSVRIIAGT
                     TLMMVLFSILPFFFKQFGLIYLITASVFGAAMIALSVWLLIKPSEKASWTVFKFSSPY
                     LTALFVAFMIDAIYH"
     gene            complement(1963..2427)
                     /locus_tag="VE223_06690"
     CDS             complement(1963..2427)
                     /locus_tag="VE223_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HZC21314.1"
                     /translation="MGRTDDLDLKILSELAKDASTSVPKLSKKMNINASVVYSRIKRL
                     SKRGLIRKFTIVINDEALGFNVKALTGINMDSKLRDNVLNELFKIPEVREVSEVTGRF
                     DVLVTMNARSLDEMHQLISEKIGHVEGVQKTETFIEMRKTAREIIYPTSISK"
     gene            complement(2513..>3592)
                     /gene="asd"
                     /locus_tag="VE223_06695"
     CDS             complement(2513..>3592)
                     /gene="asd"
                     /locus_tag="VE223_06695"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: protein motif:HMM:NF006416.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HZC21315.1"
                     /translation="SMLKVALIGGTGAVGQEFVMALNKHPWFELTQIASSEKSAGKKY
                     KEALRDPSTGILRWHNKEQIPEYIQDMIISKVENIEPKKFDLIFTALESSDAQLIEPS
                     FAQTVPVISTAAAFRYENDVPILIPGVNDEHARLLDIQRKNRGWKGFIAPLPNCTTTG
                     LAITLKPIMNKFGIKNVFMTSMQALSGAGRSPGVIALDIMDNIIPYIPKEEEKVQIET
                     KKILGDLNVHSITPNSIKVSCTCTRVPISDGHTETVFVETARPSEPEKVKEEMLKFSK
                     SITIKKLPTAPQDYILVHDDPTRPQPRVDREINDGMTTVVGRLRKDTVFDNGVKYVLL
                     SHNEKMGSAKGAVLLAELLKEKSII"
BASE COUNT         1096 a          656 c          653 g         1187 t
ORIGIN      
        1 tgacaatccc cggaaaagac gcagcattag taaaaaaaag aacagaaaag gcgtgacaga
       61 ggagaggcta ttgttaaaat aagaatagtg gatcaggaat agatagtgaa gtttaccagg
      121 ttcttttcaa agttctttca agttctcctg tactggatta ttattgtcat gaaagacaat
      181 accagttaag ttaatcattt acaaatgaga cggaataatt acgacatagt tgttgctctt
      241 tataaagtag attattgata gatcttctgt atattgttca gaatagtatc gttggtgctt
      301 gctgaggccg cgttagaaac tgttccaaag gaaataattg atcatccttc agtcagaaat
      361 ctttcccaaa aaattggtaa gatgccagga gaaattttac tagataggag ttatcatcat
      421 cacgcaatga ttcagggtag actcaaatca agttggaaac gaggtcgacc agatataatt
      481 cactttgcat tgatggaagc attatcgact cctctgtttt ttaaaggaat gctgcgtgtg
      541 tatgtacata caataaatga caagctaatc ctcataggta aagatttacg aataccaaag
      601 tcttattctc gtttcgaggg tcttatcata aatttattca aaaataaggt tataaaagga
      661 gaacaaaacg ataacgataa aaacaatgtt cttctagaat tgcacgataa tgtttcattt
      721 gaagatttga taaaaaatat tgtaaagcct gataaagtga taggtctttc tcgcgtagga
      781 gttcagagta cattcgaaga agtagtttca aataacatta ataatggcaa ttgtcattgc
      841 gcatttacga taggaggatt tcctaaaggt catttctctg acaacactac catgttattt
      901 aacaggttat attctattgg gaaattcaga ttggaggcac atgttgtcat cgcaagaata
      961 ctatatgagt gtgaaaaagt tatctttgat taatgatata ttgcatcaat cataaatgca
     1021 acaaacaatg cagtcaaata gggactagag aatttgaaaa cggtccaaga ggccttttcg
     1081 ctaggcttta ttaataacca tacagacaaa gctatcattg ctgctccaaa gacacttgca
     1141 gtaatcaaat agattaatcc aaattgtttg aaaaagaatg gaagaatact gaacaatacc
     1201 atcatcaaag ttgttcctgc aattatgcga accgattttt tttccgtatg aattgctggt
     1261 agcattggga cacctgctct tctgtagtct tttttagcat gcagagcgag actccagatg
     1321 tgggttggaa tccataggaa aactagacct gccataacaa gaccaatttc gatattctgt
     1381 gttgttactg cgacatatcc tatcattgca ggagcaccgc ctgaaaatcc tcccaaaata
     1441 atatttgctt ggctcttcct cttcaaccat ttgctatata ttattatatt gtcaagtaga
     1501 ccaaaaatca tcagagcaaa agcccatgca ttgataaacc atgagaatat tagcgaaatt
     1561 cctgccaata tcaaaccaaa ctcaagtgca tgctttgggg aaattcgacc tgacggaata
     1621 ggccttccgc ttgtcctgtt cataattgca tctatgtcgc gatcgttata actagtcaat
     1681 gtgtcagcag cagcagaacc tgcagccact ccaccaataa gtaagaccca tgttaacggt
     1741 tgaacgggga tgtgaaacaa caacgatgca gttagtgcag aaccaaaagt tgtaaaaact
     1801 aataaatacc aaatttttgg ctttgtaagt tcataataat ttttgaacct actgcttgtt
     1861 gtcatctgtg ggagcacagt acgaatatca actcttcttt aatcgttata agtcaataaa
     1921 tggatattta taccttcaaa ggcaaaatca ataaaataaa ctttattttg aaatagaagt
     1981 tggatagatt atttcacgtg cagtcttcct catttcgata aatgtttctg tcttttgaac
     2041 tccttcgacg tgacctattt tttctgagat caactgatgc atttcatcta gagagcgtgc
     2101 attcattgtt actaggacat caaatctgcc tgttacttct gaaacttcac ggacttccgg
     2161 aatcttgaag agttcattta gaacattatc tctcaattta gaatccatat tgattcccgt
     2221 aagagctttt acattaaaac ctaacgcctc atcattaatt acaatagtaa attttctgat
     2281 gaggcccctc tttgaaagcc ttttaattct actataaaca acagaagcat ttatgttcat
     2341 ctttttggaa agtttcggta ctgaagtact tgcatctttt gcaagttcac ttaatatttt
     2401 taaatctaaa tcatctgttc ttcccattta tatttctatt atatctgtag ttaacaggtt
     2461 aataaacgta ttaatttcaa attaaattgt attttttaat aataatagga gattaaatga
     2521 tgcttttctc ttttaataat tctgcaagta ataccgcgcc ttttgcagaa cccatttttt
     2581 cgttatgtga taacagtaca tatttgactc cattgtcaaa aacagtgtcc tttctcaacc
     2641 tgccgacgac tgttgtcatg ccgtcgttaa tctctctgtc tacacgcggc tgcggccttg
     2701 tcggatcatc atgaacaagg atatagtctt ggggggcagt cggtaacttt ttgatagtta
     2761 tagatttcga gaactttaac atttcttcct ttactttctc tggttcagag ggtcttgctg
     2821 tttcaacgaa caccgtttcc gtatggccat cagaaattgg gactctggta catgtacaac
     2881 tgactttgat tgagtttggt gtaattgagt gtacatttaa atcacctagg atctttttag
     2941 tctctatctg aaccttttct tcttctttcg gaatgtaagg gattatgttg tccataatat
     3001 caagggctat gacaccaggt gatcttccag cacctgacag tgcttgcatg gatgtcatga
     3061 aaacattttt aattccaaat ttattcatta tgggttttag ggtaattgct agacctgttg
     3121 tagtacaatt tggtagggga gcaatgaaac ctttccatcc tctattcttt ctctgaatgt
     3181 ccaataatcg tgcatgctcg tcgtttacac caggaattaa tattggaaca tcattttcat
     3241 atctgaaagc ggctgctgta ctaatgacag gtactgtttg cgcaaagctc ggctcaatta
     3301 actgggcatc agatgattct agtgcggtaa atattaggtc gaattttttt ggctctatgt
     3361 tttcgacctt gcttatgatc atatcttgga tgtattctgg aatttgttcc ttattgtgcc
     3421 accttaggat cccagtactt ggatcgcgta gcgcttcttt gtattttttt cctgcagact
     3481 tctcagatga tgcaatctgt gttaattcaa accatgggtg tttgtttaaa gccatgacaa
     3541 attcttgccc tacagctcct gtccctccga tgagcgctac ttttagcata ga
//
LOCUS       DASQSJ010000338         2390 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_297186, whole genome shotgun sequence.
ACCESSION   DASQSJ010000338 DASQSJ010000000
VERSION     DASQSJ010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2390)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2390)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2390
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297186"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(398..952)
                     /locus_tag="VE223_06700"
     CDS             complement(398..952)
                     /locus_tag="VE223_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZC21316.1"
                     /translation="MLPRLEYIKQARIRLGITQRKLASVAGISTSMINQIESGRCKPS
                     YETARKIFEILNSLEGRSSPKAGDICSRNLISVQKNETLHSAIGKMRSNSISQIPVFD
                     SFRVVGIISEDGLAKNVIEKDEKKIRDMLITTIMESPPPVVDVSTPAKALIPLVRFAK
                     CVLVSERGDVIGIITVTDILKMVE"
     gene            1053..2366
                     /gene="prf1"
                     /locus_tag="VE223_06705"
     CDS             1053..2366
                     /gene="prf1"
                     /locus_tag="VE223_06705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HZC21317.1"
                     /translation="MCKPRLLAVNIMQSNQTSNWDSVKRYRLKKMLNQLSSISGHGTE
                     LVTVYIPPRRQIFDVISQLRNEAGTASNIKSDLTRTHVQDALSRTVEHLKLFKETPEN
                     GLVIFCGAIPTGKGFGTEKIELYSVIPPKPIQINLYRCDDHFWTDHLKDMMKDDKIIG
                     ILAIDTQEAGLGILTGDRWEVIDTLTSGVAGKHRQGGQSARRFERLRDNELNEYYHRI
                     ADRSQKIFIDQFYVKGIIVGGPGPTKENFLREEYLDYRLQNSVISTIDTSYSGDEGVR
                     EIIDKVNEQGVMTEYRLMEEKRIVKKFMSEVHATKGLGIYGIVDVVKSLKSGAVDMVI
                     VTDDVAYVKLDVKCKRCGTSQEKFIERHNLQKIKQELLSRPCPSCSAIDFESYETDIV
                     DYLEELVTQSGSKFEIISGKTEEGAQLASIGKVGAVLRFRPIPNA"
BASE COUNT          778 a          419 c          494 g          699 t
ORIGIN      
        1 tggtgatgta cgtgctagaa catatcgatt cataattgat tacagttata attgacaaag
       61 acgaaactag aggacagata ttaataataa tatcgatgat aatagaatgt tgatggtaac
      121 ctatgaatcc tacgaagaag agcaacacta ataaatgtag gaatttacaa aatgtggttt
      181 gatactaatc tcaaaagaat tcaaataggt tagcatctat tgttcattag ttgtgcaaat
      241 ataacgctag attgcaggat atcaagaaga tatgtgtgct atgtcaatca gaactagacg
      301 gtaatagcaa attgagcatt tgtcggaaat gccttgggga tgccgattgt tgtatcggcc
      361 ttgaaaaggt gactgactag ccatctgtgt ttatttatta ttctaccatt tttaggatgt
      421 cggttaccgt tattatgccg atgacatctc ctcgctcact aactaggaca cattttgcaa
      481 acctaactag cggaattaaa gcctttgctg gtgtggatac atctactaca ggcggtggag
      541 attccattat tgttgttata agcatatcac gaattttctt ttcgtccttt tcaatgacat
      601 tctttgcaag tccatcttca ctgatgattc ctaccacacg aaaactatca aagaccggga
      661 tctggctaat tgaattcgac ctcattttcc ctatggcaga atgaagggtt tcatttttct
      721 ggacagatat tagatttcgg ctacaaatat ctcctgcttt aggagaagat cgaccttcta
      781 aggaatttag aatttcaaat atcttcctag cagtttcgta gctaggttta catcgtccag
      841 actctatttg atttatcatg gatgtactaa taccagctac agacgctagt tttctttggg
      901 taattcctaa cctaatcctc gcctgtttaa tatattctag ccttggaagc attagacgga
      961 ctcttttttt actcgatata gcttataacc tctccgaggt cacattataa ttcctgttta
     1021 ttcttttaat gttatgttga tagccttata ttatgtgcaa accaagactt cttgctgtaa
     1081 atatcatgca gagtaaccag actagcaatt gggattccgt aaaaagatat agactcaaaa
     1141 aaatgctaaa tcaattatca agtatttctg gacatggcac ggagttagtg actgtataca
     1201 ttcctccgcg gcggcaaatt tttgatgtca tttcccagtt acgtaatgaa gctggaactg
     1261 catcaaacat taaatcagac ttgactcgaa cccatgtgca agatgccctc agcagaactg
     1321 ttgagcatct aaagcttttt aaggaaacac ctgaaaatgg tcttgtcata ttctgtggag
     1381 ctattccaac tggaaaagga tttggtacag agaaaattga actctactca gttatccctc
     1441 caaagccaat ccaaataaac ctctatagat gtgatgatca cttttggacg gatcatttga
     1501 aggatatgat gaaagacgac aagataatag gaatcttggc tatcgacact caagaagctg
     1561 gtttaggaat tttgacaggt gatagatggg aagtaataga cactctcaca tccggagtgg
     1621 ctggaaagca tcgacaagga gggcaatccg ctagaaggtt tgaaaggctg cgcgacaacg
     1681 aattaaatga atattatcac aggattgcag accgttcgca aaagatattc attgatcagt
     1741 tctatgtaaa aggcattatc gtcgggggac ctggtccgac taaagaaaat tttctccgag
     1801 aagaatatct agattacaga ttgcaaaaca gcgttataag cacgatagat acgtcatact
     1861 caggtgacga aggcgtaagg gaaatcatag ataaagtgaa tgaacaagga gttatgaccg
     1921 aatatcgctt aatggaagaa aaaagaatag tgaagaagtt tatgagtgag gttcatgcta
     1981 caaagggtct tggcatttat ggtatcgtag acgttgtaaa gtcactaaag agtggagctg
     2041 tcgacatggt tattgtaacc gatgatgttg cttacgtaaa gctggatgta aagtgtaaaa
     2101 ggtgcggaac cagtcaagaa aagtttatcg aaagacacaa cttgcaaaaa ataaagcagg
     2161 aactcctctc aaggccatgt ccatcttgca gcgcgattga ttttgaaagt tacgaaacag
     2221 acatagtaga ttatctagag gagttggtca cacaaagcgg aagcaaattc gaaataatat
     2281 ctggaaagac agaagaaggc gctcaattag cgagtattgg aaaagttgga gcagttcttc
     2341 gattcagacc aattcctaat gcttaactaa tacctttttt agcaattaca
//
LOCUS       DASQSJ010000339         2073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_257402, whole genome shotgun sequence.
ACCESSION   DASQSJ010000339 DASQSJ010000000
VERSION     DASQSJ010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_257402"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1167
                     /gene="thrC"
                     /locus_tag="VE223_06710"
     CDS             <1..1167
                     /gene="thrC"
                     /locus_tag="VE223_06710"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HZC21318.1"
                     /translation="IYNESGVWRFRDLINFLEIDTENFDECAKVLVSLDGSEGRLSRP
                     YKMSKVADYVNMDHDGFLLQPEGYNPSGSFKDNGMSTALTHAKMLNVKRLVCASTGNT
                     SASASMYAANENMECDVYIPKGEIAPGKLGQAFQFGAQVIQVDGNFDDALSISLKKAK
                     ENGGYTVNSVNPFRIEGQKTIVYRVMEHLNWEPPDWIVYPAGALGNTSSCGKALIELY
                     EWGWIRKIPRIVAVNSVGANTFYELVNGLFESRELKWNNGKPDLEMIERYYAFKDKQG
                     IRPKTRATAIQIGKPANIVKALRALDFTNGIVVEVDDKDMSDGMSLVGLNGFDCEMAS
                     GAVPAAVRKLRSEEIIYKDDIVVGILTGRQKDPRLSVEYHTNGENAFARPPRDV"
     gene            1445..1864
                     /locus_tag="VE223_06715"
     CDS             1445..1864
                     /locus_tag="VE223_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21319.1"
                     /translation="MIDYEFLYAFSKEILNLDNNIRWVGITNKFGVLLNTEHREGLKP
                     FLTEEENEDYASLTVTRQKTRTKFEPKVGKLIYAAGRYEKLNRATIPINDNYFLLVAL
                     DVELKNFEDVIMEKVIPLVENKKNSFIVKDDDVTSKQ"
BASE COUNT          682 a          325 c          449 g          617 t
ORIGIN      
        1 atatataacg aaagcggagt ttggcggttc cgcgatctca taaatttttt agaaatagat
       61 accgagaatt ttgatgaatg tgcaaaagtc ttggtatctc tggatggttc agaaggtagg
      121 ctatctaggc cttataaaat gagcaaagtc gctgattatg taaatatgga ccatgatggc
      181 tttctgttac agccagaggg atacaatcct agtggatctt tcaaggataa tggaatgtct
      241 acagctctca cacatgcaaa gatgcttaat gtcaaaaggc tggtctgtgc ttccactggt
      301 aatacttcgg catctgcgtc gatgtatgca gcgaatgaaa atatggagtg tgatgtctat
      361 attccaaagg gagaaatagc ccctggaaaa cttggtcagg catttcaatt cggtgctcag
      421 gtaatacaag ttgatggcaa ttttgacgat gctctctcta tatcattaaa aaaagctaag
      481 gagaacggag gatatacggt gaattctgtg aacccctttc gcattgaagg ccaaaaaaca
      541 atagtttata gagtgatgga acacctgaac tgggagccac ccgattggat tgtgtatcca
      601 gcaggtgctt taggaaatac ttcaagttgc gggaaggcct taatagaatt atatgaatgg
      661 ggatggataa gaaagattcc gcgaatcgtt gcggttaact ctgtgggcgc aaatacattt
      721 tatgaacttg ttaatggatt atttgagagc cgtgaactaa aatggaataa tggcaagcct
      781 gatttggaaa tgattgaacg ttattatgca tttaaggata agcaaggtat taggccgaaa
      841 acaagagcca ctgccattca aataggcaaa cctgctaaca ttgtgaaggc gctccgtgca
      901 cttgatttta ctaatggaat agttgttgaa gttgatgaca aagatatgag tgatggtatg
      961 agtttagtag gtctaaacgg atttgattgt gagatggcat cgggggcagt tcctgctgct
     1021 gtacgaaagc ttcgaagtga agagatcata tacaaagatg acattgtagt aggcatatta
     1081 acaggtagac aaaaggatcc caggttatct gtagaatatc atacaaatgg cgaaaatgct
     1141 tttgctaggc ctccaagaga tgtctgatca ccaaatttta tccattggtt aattattgaa
     1201 tttgtcctca tggattgcct ttacctctat ccttcagaaa cttcttcaga cgagtagacc
     1261 caattatatg aactagtcaa gatgaaacca ttatgtagaa ataaatccat agacaactgg
     1321 cttcttatat cgcatgaatt agtgcttgat aataataata atatatcttc agcaaaaaat
     1381 tagaagtttt gtctatgaat gaaggaatat actttttaaa gtcagctctt atatattctt
     1441 ccatatgatt gattatgagt tcctctatgc atttagcaaa gaaatactaa atcttgataa
     1501 taatatacga tgggtaggta ttactaataa atttggtgtt cttctcaaca cggagcacag
     1561 agaaggatta aagccctttc tgactgagga agagaatgaa gattatgcat cgcttacagt
     1621 aactagacag aagacgagga cgaaatttga gccaaaggta ggtaagctaa tttatgctgc
     1681 tggacgatat gaaaaactga acagagcaac tataccaata aatgataact actttctgct
     1741 tgtagcacta gacgttgaat taaaaaattt tgaggacgtc ataatggaaa aagtaattcc
     1801 gcttgttgag aataaaaaaa atagttttat tgtaaaagat gatgatgtta cttcgaaaca
     1861 ataacatttt gcctagccaa tagcgagtta tgtatttctg gaacccgatt ctatccatat
     1921 aggatttagt cgcaataaaa aataaaaaat ggtggcctta tatgattagg tcaattttga
     1981 ggtatcactc ttgttgctgc cttatggaat agatctgcta tacaacttgc cttctagagc
     2041 tagtttgtac atttcagcta cataggggtt ctt
//
LOCUS       DASQSJ010000340         5228 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_297360, whole genome shotgun sequence.
ACCESSION   DASQSJ010000340 DASQSJ010000000
VERSION     DASQSJ010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5228
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297360"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..312
                     /locus_tag="VE223_06720"
     CDS             148..312
                     /locus_tag="VE223_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21320.1"
                     /translation="MGKGEERNLTSSNSSKKDNREKKFRRNAKKLEEEYSKKTHISLR
                     MSLNLCYHYQ"
     gene            1178..2005
                     /locus_tag="VE223_06725"
     CDS             1178..2005
                     /locus_tag="VE223_06725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HZC21321.1"
                     /translation="MMEITIGHTPDSDDAFMFYGIVSGKVKPQNIRIKHVIEDIETLN
                     KCAIKHELDVTAVSAHAYAYLKDYVILCSGGSFGLEYGPIVISKKKLSHSQLRKCTIA
                     IPGKMTSANLLLNFALGEFKEKETSFETIPNAVLTNKVDAGLVIHEAQITYNNSKLYN
                     VLDLGEWWTRETNGLPVPLGINVASSRSMTLEQIRQFDSTFRNSILYGLKNFDAAVDF
                     AMRYSRGQSRDVITRFIKMYVNSMTSNMGDKGKESIKKMFAIAKERGILSVDQLRFA"
     gene            complement(2303..3403)
                     /locus_tag="VE223_06730"
     CDS             complement(2303..3403)
                     /locus_tag="VE223_06730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HZC21322.1"
                     /translation="MLKSILGETPSLEKALAGEELSYQDGVQLLKEENLFLLGLVADK
                     IRKNLKGDTVTFVSSYYLNYTNVCAASCPLCAFYRKGNEPDAYTLTTEQILARARIAI
                     KQMGSTELHIVGGFHPKLDLHYYEGIIKAIKAEFPNVTIKALTPAEIFFIARLTRNSV
                     KEVLLTLKAAGLDALPGGGAEIFDPESRDLIVRGKCSGEEWLDTARQAHNLGLKSNCT
                     MLFGHIEKPEHIVDHILKVRELHKKTKGFTTFIPLKFSLDNTELEKQGVIIRESPSIY
                     DLRIIAVSRLLLANVLNNISVYWVALGKKLAQVALSYGGNDMVGTAFSEEIFKAAGKT
                     TGTSTQELVNLISEIRREPAQRDTFFNIIKKF"
     gene            3497..4633
                     /gene="mqnC"
                     /locus_tag="VE223_06735"
     CDS             3497..4633
                     /gene="mqnC"
                     /locus_tag="VE223_06735"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HZC21323.1"
                     /translation="MLVLQNSLLVQNLISQSDVADILDRALCGQCLGLNECIRLIKSD
                     DSYSIGLVGSLLRQRLYGNTATFVNNIILNYTNVCVTYCKFCAFYRPPGHEQSYTLSL
                     DEIVRRVTISRDAFGITQVLIQGGHNPNLKIEYYEEAFKAIKAKCPEVGIHGLSASEI
                     DMIARVEKSSIKEILSRLKAAGLDSLPGAGAEILDDNVKAEISPLKIKSHEWIRIMEL
                     AHEIGLKSSATMMYGTVETEEQRAQHIMKIAKLQEKTRGFMAFIPWSFEPNKTQIQSE
                     GLIKYPPGGLQLLKMIAIARIIYYGLIDHIQSSWLTNGIGMAQLALNYGADDFGGTLI
                     GEEVVSATGARSTELTTHKIISAIKQIGFKVAERDNLYRTIKYY"
     gene            4947..5177
                     /locus_tag="VE223_06740"
     CDS             4947..5177
                     /locus_tag="VE223_06740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21324.1"
                     /translation="MPSFDWDNLAKLKKIVKTKDERTCGNLMAEYKDNIIIIEGITKS
                     REYMVPKSKVVDCNRNGIYLDLSYDMLSSFEF"
BASE COUNT         1777 a          872 c          973 g         1606 t
ORIGIN      
        1 ctaacgattc tgttgttgct actactatta ctactacaac aacagctgca aacaaggcag
       61 tctatcgttt aggacatact gatacctggg catgtaaaaa ctgtagaatc aaggctgaca
      121 aacactttat gcatatacat gattgtagtg ggaaaaggtg aagagcgcaa tttgaccagt
      181 agtaatagca gcaaaaaaga taatagggaa aagaagttta gaaggaacgc gaagaagcta
      241 gaagaagaat actcgaagaa aacccacata tcgctaagga tgagcttgaa tttgtgctat
      301 cattaccagt agagcgaaaa atacgggaac catatatgcg acagcagagc agcaagaaga
      361 aaaggaaaaa gactattgaa ggaataaatg ggccctgata tggatcagta ttctgttggc
      421 atggttgcgt gggcaaccat gtatttgcct ggacaagatc ttcaggaatg agcttgctac
      481 ctatttccgt ctaaaccttc atactatcta ttatagattg tattgacata ttttgcaata
      541 ctcttcataa aaagccgata aatattgacc ttgtatcata tatacaatat ggcataaaaa
      601 gcgtatgaag caagcgatag taattgagaa gctaggatat gacaaagagg taggtgacat
      661 gtgcatattt tgtctcagat ctactggcaa tgagaatata cctgtttgtc ttaattgtat
      721 ccagaatgaa aacttttatc attcactagg tatcttaaaa caaatgcttc gtgatagaag
      781 gaaaactcaa acatagcata aaagcagcaa aaatataaat tataattcct gtgctaatat
      841 aggccaagac caaaaggcat ttctcaaaat ataatagtat tagagtgtac atttggaaaa
      901 aactaagaac aaaagtgaaa aatatgtttg ctatttgaca tcttacatcg cagaaggaaa
      961 aatccaataa agaaaataac ctgacccgct acatgtagta acagcatctc acatagccat
     1021 cactccatta gagagggtct tttgatatta ttggcaaaca agtcattact atgacaatgc
     1081 ctttcatatt aaatatattg aagtcctgtt gattggttgg ttaagctata gcaatattct
     1141 atatagctat atattatttc ctaaaaatat cattatgatg atggaaataa ccataggtca
     1201 tactccagat tctgatgatg cttttatgtt ctatggcatt gtttctggca aagtaaagcc
     1261 ccagaatatt agaatcaaac atgttataga agacatcgaa actcttaaca aatgtgccat
     1321 aaagcacgaa cttgacgtca ccgccgtttc agctcacgct tatgcttact tgaaggacta
     1381 tgttatacta tgtagtggag gaagctttgg tttagagtat gggccgatag tcatttctaa
     1441 gaagaaatta tcacattcac aattaagaaa gtgtacaatt gcaattcctg gcaagatgac
     1501 atctgctaat ttattgctaa attttgcatt gggagaattt aaagaaaaag agacatcttt
     1561 tgagacaatt ccaaatgcag tactaactaa taaagtagat gctggtctgg tgattcacga
     1621 agcacagatt acgtataata attcaaaact ttacaatgtt ctagacttgg gagagtggtg
     1681 gactagggaa acaaatgggc tacctgtgcc attagggatt aatgtagcaa gtagcagatc
     1741 aatgacgttg gaacagatca gacaattcga cagcactttt agaaattcaa tcttatacgg
     1801 tcttaaaaat tttgatgctg cagtagattt tgcaatgaga tatagtagag gacaatcaag
     1861 agatgtgata actaggttta tcaaaatgta tgtaaatagt atgaccagta atatgggaga
     1921 taaaggcaaa gaatcaatca aaaaaatgtt cgcaatagct aaggagagag gaatactatc
     1981 agttgatcaa ctgcgttttg cttagcgcta tccgtcgcta atatctatct aattaaatta
     2041 gatattcatg tcatgcataa ctggtgattc acaatttttt gtgaatcact aacttgtatt
     2101 gcaatataag aacatgtgac gtttatttct tatgatcctc attctcggtt aagattctga
     2161 ctagatgcgg tataatcaca ttaaatatgt atcttaagtc ctcactgcaa gatcagcgtt
     2221 caaatacagt tgaaagctaa taaagtggat aatgtgaccc atgttaataa taagcctttg
     2281 tgaacatcat gagtggcact agttaaaatt tcttaattat attgaagaat gtatctcttt
     2341 gagcaggttc tcttctaatt tcacttatca ggttcactaa ctcttgggta gatgttcctg
     2401 ttgttttgcc tgcagcctta aaaatttctt ccgaaaatgc agtcccaacc atatcattac
     2461 caccatatga taaagcaacc tgcgccaatt tctttcctag agcgacccaa tacacagaga
     2521 tattgttcaa tacatttgct agcaacaatc ttgacactgc aataattctc aaatcatata
     2581 ttgaagggct ttctctaatg atcacacctt gtttttctaa ttctgtatta tctagactaa
     2641 actttaatgg aataaaagta gtaaaacctt ttgttttctt gtgaagttcc ctaactttta
     2701 aaatatgatc tacaatatgt tcaggttttt ctatgtgacc gaaaagcatt gtgcaattac
     2761 tcttcaatcc caaattatgc gcttgacgag cagtatcaag ccactcttcg ccagaacatt
     2821 ttcctctgac aatcaaatct ctggactctg gatcaaaaat ctctgccccg ccacctggaa
     2881 gagcatctaa tcctgcagcc ttcaatgtaa gtaagacttc tttaactgag tttctagtta
     2941 gccgagcaat aaagaaaatt tctgcaggag tcagggcttt tattgtaacg ttaggaaatt
     3001 ctgcttttat tgcctttatg atgccttcat aataatgaag atctaatttt ggatggaaac
     3061 ctccaactat atgaagttct gttgatccca tttgctttat tgcgatcctt gctcttgcta
     3121 agatctgttc ggtggttaag gtatatgcat caggttcatt gccttttctg taaaatgcgc
     3181 acaaaggaca actggcagca caaacattgg tatagtttag atagtaagaa gaaacaaaag
     3241 taacagtgtc tcctttaagg ttcttacgaa tcttatcggc tacaagaccc aacaaaaaca
     3301 ggttctcttc ctttaataat tggactccat cttgatatga caattcttcg cctgcgagcg
     3361 ctttttctaa tgacggtgtt tcccccaaaa tacttttgag caagttattt gttctacgaa
     3421 tgaagttaat ataaaatatg tgctggcagg ttcttataat ttgtaaagaa taaatagtat
     3481 tgatagttca gagattatgt tagtattgca aaacagcctt ctggtacaga acctgatcag
     3541 ccaatctgat gttgctgata ttttggaccg cgcattatgt ggccaatgtt tggggctaaa
     3601 tgaatgcata aggcttatta agtctgatga ttcctattcg atagggcttg ttggaagttt
     3661 actaagacaa agactgtatg gaaatactgc cacttttgtt aataacatca tcttaaacta
     3721 taccaatgtt tgtgttactt attgtaagtt ctgtgcattc tatcgtccac ctgggcatga
     3781 acaatcatat acattatctc tagatgagat agtgcgacgc gtaacaatat ctcgagatgc
     3841 atttggtatc acacaggtat taattcaggg tggccataat ccaaatttaa aaatagaata
     3901 ttatgaagag gcttttaagg caataaaggc aaaatgccct gaagtaggaa ttcatggact
     3961 ttctgcatct gaaattgaca tgattgcaag agttgaaaaa agtagtataa aggagattct
     4021 ctctagacta aaagcagcag gactagattc tcttcctggc gcaggtgctg aaattcttga
     4081 tgataatgta aaagcggaaa tcagcccact taagatcaag agtcacgagt ggattcgaat
     4141 aatggaactt gcgcacgaaa ttggtctaaa gtcttctgca acaatgatgt atggaacggt
     4201 tgaaactgaa gaacaacgag cacaacatat tatgaaaatt gcgaaattgc aagaaaaaac
     4261 aagagggttc atggcattta ttccttggag ttttgagcca aacaagaccc agatacaatc
     4321 agaaggactg ataaaatatc ctcctggagg attgcaacta ttgaagatga tagcaattgc
     4381 aagaataatc tattatggct tgattgacca tatccagtca tcttggctga caaatggaat
     4441 aggcatggcc cagctggcac ttaactatgg cgctgatgat tttggcggta ccctgattgg
     4501 tgaagaagtt gttagcgcaa cgggtgctag atctactgag ctaacgacac acaaaattat
     4561 atctgctatt aaacagattg gttttaaagt tgcagaaaga gacaacctgt atcgtaccat
     4621 aaagtattat taataatgat gccctgaatg tgcttggcaa atcgaataaa actaattctg
     4681 cactcctaaa tgataagtac atatctttgc aatactgacc ttctcctaat gccgggaatg
     4741 cttttctagc cttctaatgc ttgtctgctt ttgtatatta attaggtaag tattaactgt
     4801 taatattcaa aaaactgata attattaaat taggtagata tgacatagta atttcgatag
     4861 tttgtatttt ataaaatagt ttaatttaaa attacttagt atttttgtaa ataatattaa
     4921 tatgtttgtt ttgaaattta ctttgcatgc cttcttttga ctgggataat ttagcaaagt
     4981 taaagaaaat agtaaagacc aaagacgaac gaacatgtgg aaatttaatg gcagaataca
     5041 aagacaatat cataataata gaaggcatta caaagtctcg tgaatacatg gttccaaaat
     5101 ctaaagtagt tgattgtaac agaaatggga tttaccttga tctatcgtat gatatgttat
     5161 cgagtttcga attttaataa caaatgtata tttcacatgg ccatgtagaa accatcacta
     5221 taattaca
//
LOCUS       DASQSJ010000341         3088 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_376811, whole genome shotgun sequence.
ACCESSION   DASQSJ010000341 DASQSJ010000000
VERSION     DASQSJ010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376811"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..394
                     /locus_tag="VE223_06745"
     CDS             <1..394
                     /locus_tag="VE223_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="oligopeptide/dipeptide ABC transporter
                     ATP-binding protein"
                     /protein_id="HZC21325.1"
                     /translation="AQIINLLKRLKRERGMTIILITHDMAIISEIADKVGIMYAGQLV
                     EFGSAVEIYRNPKHPYSQSLISAIPKLRSDNKKLQFIKGNPPNMLNLPPGCRFYARCP
                     YAMNVCKQDPPKIKTQTGYTLCWLYEES"
     gene            619..786
                     /locus_tag="VE223_06750"
     CDS             619..786
                     /locus_tag="VE223_06750"
                     /inference="COORDINATES: protein motif:HMM:NF003161.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L40e"
                     /protein_id="HZC21326.1"
                     /translation="MPITDANKKQIAQQRRLFFKICFKCGGRNPISSTRCRKCRGSQM
                     RLKNRTLGVKK"
     gene            906..2636
                     /locus_tag="VE223_06755"
     CDS             906..2636
                     /locus_tag="VE223_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HZC21327.1"
                     /translation="MRYPKVVLTADRTLMSPYRGISLASFFGCAPALDLNRKQTSLLY
                     RILGNQVAPRLLFDFICNPIGHTNGIAHYAPYGLRKVEAALIRDGYSREDVVVAHPDY
                     IEQFIGPETLAVGTYEMDPLGMGPVTMTFTYGRRQMSYDEFYCRDLHLRINAAKIRNN
                     SKAKVIAGASGTWQYNYDPAKIEEYGLYGIVEGDLGGIGPEIDGVGAGGKFFDALIDG
                     EMETANPFKKTKFKIDVKEFSRQGRKYHGRFIHYWEEPSVEEIPNIVNPSMHGMSEVM
                     RGCGRGCKFCDVTLRPLRYYPVEKVQKEIEINMKYGGLKNAWIHSDDIFVYGLNPRTT
                     KNMQPNREALEELFTGIMATGIEHTNPTHGTLAGAIADERLIPNVSKIIRASPDNHIG
                     IQCGFETGSIRLIGKYADRKLAPFKPTEWHWVVKTGIKTLNEHYWVPAFTLIMGLDND
                     ETPEDSWETIRLIHEIETEQPESKFTVTPLTFVPIGLLEKSDFFDIGSTMDPAKLGVM
                     YKTWQHNFRYGIQKFMHKVGRDNPIKNLFFAALARTLGGVPLTSMERFARHKGPEHEK
                     VIEKIKASYW"
     gene            complement(2822..>3088)
                     /locus_tag="VE223_06760"
     CDS             complement(2822..>3088)
                     /locus_tag="VE223_06760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21328.1"
                     /translation="TKKMTCKGICIRHKAQKPSASGRYTSGQKRCQICEIFIKWDGLW
                     CPCCGYRLRTKPRNKKYKARLRTGQNQQGLYIQDTVNYEKYVVR"
BASE COUNT         1050 a          545 c          594 g          899 t
ORIGIN      
        1 ggcacaaata attaatctac ttaagagatt aaaaagggaa agagggatga caataattct
       61 cataacacat gacatggcta ttatttcaga gatcgcagac aaagttggga taatgtatgc
      121 aggtcaattg gtagagtttg gaagtgctgt cgaaatttac agaaatccaa aacacccata
      181 tagccagtca ttaatctctg ctattcctaa gttacgttct gataacaaga aattacaatt
      241 tatcaaaggc aatccaccaa atatgttaaa tttacctcct ggttgtaggt tttatgcacg
      301 atgtccatat gctatgaatg tatgtaaaca agatcctccc aaaataaaaa ctcaaacggg
      361 atatactctc tgttggcttt atgaggaatc atagtaaaga tattaaaaca catacaaaat
      421 agaacaaata aattcaaaga acaataactt tgataaattt ttcaacctta caggcatatg
      481 tcatttctat ttgttcataa gatttaaata atataattac atgagtggtt aaagaaattc
      541 ttctattcat taatctactg ttgataatga ctatgatgga aagatagaaa tttatgtttg
      601 tatacaacaa gaaggcaaat gcctatcaca gatgcaaata agaaacagat tgctcaacaa
      661 cgcaggttat tctttaaaat atgttttaaa tgcggaggaa gaaatccaat ctcttccaca
      721 agatgtagaa aatgccgagg tagtcagatg agactaaaaa atagaacgct tggagttaaa
      781 aaataattat cctctttatt tcgaagatca taagactacc atttatctat tggatcccct
      841 agctttagat agaaagactt aaaatctgtc tgcaatcatt gatgttgatt aggatttaga
      901 gatttatgag ataccctaag gtagtcctta ctgcagatcg tactctgatg tccccatatc
      961 gggggatatc gttagcatca tttttcggtt gtgcaccagc actggatcta aacagaaaac
     1021 agacttcatt attatatcgt attttaggca accaggttgc acctcgcctg cttttcgatt
     1081 ttatatgcaa tccaattggg cacactaatg gcattgctca ctatgctccc tacggtctaa
     1141 gaaaagtaga agccgctctg ataagagatg gttatagcag agaagatgtc gtggttgctc
     1201 atccagatta cattgagcaa tttataggtc cagaaactct agcagttgga acttatgaaa
     1261 tggatccatt aggtatgggc ccagtaacca tgacttttac ttatggtcgt aggcaaatgt
     1321 catatgatga attttattgt agagacctac accttagaat caatgctgct aaaataagaa
     1381 ataatagtaa ggccaaggtg attgccggtg cctctggaac atggcaatat aattatgatc
     1441 ctgcaaaaat tgaagaatat ggtctatatg ggattgtaga gggagatctt ggtggcatag
     1501 gtcccgagat tgatggggtg ggtgctggcg gaaagttctt tgatgctctt attgatggag
     1561 aaatggaaac agcaaatcca ttcaaaaaaa ctaaatttaa gatagatgtt aaagaattct
     1621 caagacaagg aagaaaatat catggccgat ttatccatta ctgggaagaa ccttcagttg
     1681 aagagattcc aaatattgtt aacccgagca tgcatggcat gagcgaggta atgcgtggat
     1741 gcgggcgtgg atgcaaattc tgcgatgtta cccttaggcc actaagatat tatcctgttg
     1801 agaaggttca aaaagaaatt gaaatcaata tgaaatatgg tggtttaaag aatgcgtgga
     1861 tccatagtga tgatattttc gtatatgggt taaatccaag aacaactaag aacatgcaac
     1921 ctaaccgtga agcacttgaa gagctcttca caggcattat ggctacaggt attgagcaca
     1981 ccaatcccac acatggaact cttgctggag caattgctga tgaaaggctt attccaaatg
     2041 tgtccaaaat cattagggcc tctccagaca atcatattgg catacaatgc gggtttgaaa
     2101 ctggtagtat aagattaatc ggaaaatacg cggatagaaa attagcgcca ttcaagccta
     2161 cagaatggca ttgggtcgta aaaacaggta taaaaaccct caacgaacac tactgggttc
     2221 ctgcattcac tttaatcatg gggcttgata acgatgagac tccagaagat agttgggaaa
     2281 caataaggct tattcatgaa atagaaacag aacaaccaga atcaaaattc accgtaaccc
     2341 cactaacatt cgtgccaata ggattacttg aaaaatcgga cttttttgac attggaagta
     2401 ctatggatcc agcgaaatta ggcgtcatgt acaagacttg gcagcataat tttaggtatg
     2461 ggattcagaa attcatgcat aaagtcggtc gcgataaccc aataaagaac ctattctttg
     2521 ctgcactagc aagaactctt ggcggcgttc cactcacctc aatggaaagg tttgcaagac
     2581 ataagggtcc agagcacgag aaagtaattg aaaagatcaa ggcaagctac tggtaatgct
     2641 aataacaaga tctaattagc aaaggctaaa gctttaaact aaccattact acattaagat
     2701 tttatgcaag gatcaattga gatagatctt agcagagaaa agttatttgt tattttttca
     2761 taaggcctta aacgcagatt agactccaaa atcatttcaa aatgtatatg cagttctacc
     2821 cttaacgaac tacatatttt tcataattta ctgtatcttg tatatataat ccttgttggt
     2881 tctgtcctgt tctcaacctt gccttatatt ttttatttct tggttttgtt ctcaatctat
     2941 atccacaaca cggacaccac aatccatccc attttataaa tatctcacat atctgacagc
     3001 gtttctgtcc actcgtatag cgaccagaag cagatggctt ttgtgcttta tggcgtatac
     3061 atataccctt acaggtcatt ttctttgt
//
LOCUS       DASQSJ010000342         4067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_376927, whole genome shotgun sequence.
ACCESSION   DASQSJ010000342 DASQSJ010000000
VERSION     DASQSJ010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376927"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2705)
                     /locus_tag="VE223_06765"
     CDS             complement(<1..2705)
                     /locus_tag="VE223_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HZC21329.1"
                     /translation="MELLGKFDAKAIENEIRTYLDNNIDLATLLENNLQGSTRKIGYI
                     EGPPTMNGEPHAGHLRGRIIKDLWYRFNTLQKRNVVFRAGWDTQGLPMELQAEKELGL
                     TGSKTDNINKVGIQKIVETCKKLIQRNNEKWIRADKLLGVSFNYEKAYYTYRDEYIER
                     EWLYLKKAWEKGILREWFRVVAYCPSCQTSLSNAEINQEYATVEDPSFYYKVKLSDED
                     AFLIVWTTMPFTVITDEMVGVNPDALYVYVKVKNERWVVSENRLQDLMKELHIEDFAI
                     EKKIDGRALDGKYYIHPLLSLIPGLEELAKGGTIHFIVAEEFVDISTGSGIVHLSPAN
                     GEEDFDIAVKRNVPIFVPIDDRVIFTEKAGIFKDLFVRDADFKVVRAMKDSGASVKIG
                     KIKHQYPLCWRSHHKIVWLARREYFYMIEKLGDKPLQAAQKADYFFEPPKNRFLEIIK
                     EKVPWCISRERVWGTPLPIWTCKKCGYKELIPSREEIVKKAISLPSGPAFELHRPWID
                     EIEIHCEKCGQKMQREPFVLDTWHNSGGAPYASLTDLEYQNLIPAAFLTEGIDQTRGW
                     AYTLLMENIILTQSAAAPFRSFLFQGHVLDEKGNKMSKSVGNVIDAYNLLSDSSVDLV
                     RFYFIWKASPIESLNFSLQEMSSRPYQIISTLYYLHIYFKQNSSFDKFESEKHHLTWV
                     LNNRLLGLADTWLLSKLQNLVKVVTVAFERCRFHEAAKAIEEFIINYISQTYVPITRN
                     DIWDDDDKTLLHRLTIYSILGHALKQIDIMLHPLSPFVTDYLYLTCFGGAKKSLLFED
                     WPKYDEKLINSEVEDAFDKLKEAVSLGNNARMKAQIKRRWPINYAFICLSDPKFLTID
                     GISDTLKNQLNVENYDVVKICVNTQIQKILSLLENQIPIVTHIKL"
     gene            2804..3340
                     /gene="ppa"
                     /locus_tag="VE223_06770"
     CDS             2804..3340
                     /gene="ppa"
                     /locus_tag="VE223_06770"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HZC21330.1"
                     /translation="MNILNTLKPGENPPDEINAVIEIPKGSSIKYEMDAESGAIFVDR
                     KLFTAMFYPCNYGFIPQTREEDGDPVDVLVLGNDSVIPMSIIRSRPVGVLLTEDEEGQ
                     DSKIIAVPITKLDPSFSTVTDINSIPEHIRDQIKHFFEHYKELEKGKYVKVIGWDAKE
                     KANKKIAEAIERYKKERK"
     gene            complement(3523..>4067)
                     /locus_tag="VE223_06775"
     CDS             complement(3523..>4067)
                     /locus_tag="VE223_06775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21331.1"
                     /translation="KLKKWKAHAIRLNEIKIIFDNDKNTTTLAQAEKVFLNAKRQQIE
                     RMATEKFQEVKKNWEDFDKPLEFDSYYNEKIAQKVKEIEDKIKTNVLQLLSGQEWKIN
                     CDKCDLELAIRFSAKDLSILLQDGFIDIECNGNNIFSMLPKVLSIPPKTSENIFEQQK
                     PRYDHTTRITLHSLIQNYLQ"
BASE COUNT         1237 a          776 c          675 g         1379 t
ORIGIN      
        1 tttagtttga tatgagtaac aattggtatt tgattttcta gtagacttaa aattttttgt
       61 atttgtgtat ttacacatat cttgacaaca tcataattct caacgttaag ctgatttttc
      121 agtgtgtcgg aaataccatc aatagtaagg aatttaggat cagacaaaca aataaatgca
      181 taatttattg gccatcgtct ttttatttga gctttcatcc ttgcattatt tccaagcgag
      241 acagcttcct ttaatttatc aaacgcatct tcaacttcac tgttgataag tttctcgtca
      301 tactttggcc aatcttcaaa tagtaggctt ttttttgctc cgccaaagca agttaaataa
      361 agataatctg tgacaaaagg tgataatgga tgaagcatta tatctatttg ttttaatgca
      421 tgtccaagta tagaataaat tgtgagtcta tggagcaggg ttttatcatc atcatcccaa
      481 atatcatttc ttgtaattgg aacatatgtt tgacttatat aattgattat aaattcttca
      541 attgcctttg ctgcttcatg gaatctacat ctctcaaatg ccaccgtgac tactttaact
      601 aaattctgca gctttgacaa aagccatgtg tccgctaagc caagcaatct attattgagc
      661 acccatgtga gatgatgttt ctcactttcg aatttatcaa aactactgtt ctgtttaaag
      721 tagatgtgca gataatacaa ggtgctgata atttgatatg gtcttgaaga catttcctga
      781 agactaaagt ttaatgactc aattggagat gctttccaaa taaaatagaa tcttaccagg
      841 tcaactgagc tatctgaaag cagattgtaa gcgtctatta catttccgac actcttgctc
      901 atcttatttc ccttttcatc tagcacatgc ccttggaaaa ggaatgatct aaatggagca
      961 gctgcacttt gagtcaaaat aatattttcc attaacagag tataagccca acctcttgtt
     1021 tgatcaatcc cttcggtaag aaatgcagcc ggaattagat tttggtattc caaatcagta
     1081 agtgaagcat agggcgcccc accactgtta tgccatgtat ctagaacaaa aggctctctt
     1141 tgcatctttt gtccgcattt ttcacaatgt atttcaatct catctatcca tgggcgatgc
     1201 agttcaaaag caggaccact aggaagacta attgccttct ttacgatctc ctctcttgaa
     1261 gggattagct ctttatatcc acattttttg caagtccata taggaagtgg cgtcccccag
     1321 acacgttctc ttgaaataca ccacgggacc ttctccttga taatttctag gaacctattt
     1381 tttggtggct caaaaaaata gtctgccttc tgtgctgcct gcaatggttt atcgccgagt
     1441 ttttcaatca tataaaaata ttcacgtcta gcaagccaga caatcttatg atgtgagcgc
     1501 cagcaaagag gatattgatg ctttatcttg cctattttta cagaagcacc tgaatctttc
     1561 attgctcgta cgaccttaaa gtcagcatct ctaacaaata gatctttaaa tatgcctgct
     1621 ttttctgtaa aaataactct atcatctata ggcacaaaga ttggaacatt tctttttact
     1681 gcgatatcaa aatcctcttc accattagca ggcgataagt gtacgatacc actgccagta
     1741 gaaatatcta caaattcttc agccacaatg aaatgaatag tgccaccctt tgccagctcc
     1801 tcaagtccgg gtataagaga cagcaaagga tgaatgtaat atttgccatc aagtgcccta
     1861 ccatcaattt ttttttcaat tgcaaaatct tctatatgca gttctttcat caaatcttgt
     1921 aatcgatttt cactcactac ccacctttca tttttaacct taacataaac ataaagagca
     1981 tctggattaa cacctaccat ttcatctgtg ataacagtaa aaggcattgt tgtccagact
     2041 atcaagaaag catcttcatc agataacttt actttgtaat agaacgaagg atcttcaaca
     2101 gttgcgtact cttgattaat ttctgcattg ctaagtgagg tctgacatga aggacagtag
     2161 gctaccactc tgaaccactc ccttaaaatt cctttttccc aagctttctt taaatataac
     2221 cattctcttt caatgtattc atcgcgataa gtgtagtatg ctttttcgta gttaaaggat
     2281 acacctaata atttgtcagc gcgaatccac ttctcattat ttctttgaat taatttcttg
     2341 cacgtttcta ctattttttg tatcccaact ttgttgatat tatctgtctt actgcctgtt
     2401 agtcctaact ccttttcggc ctgtaactcc attggcaaac cttgtgtatc ccagcctgct
     2461 ctgaaaacca cattcctttt ctgcagggtg ttaaaacgat accaaagatc tttaattata
     2521 cggcctctta aatgtcctgc atgtggttcg ccattcattg ttggagggcc ctcaatgtaa
     2581 cctatcttgc gtgtgctacc ctgaagattg ttttccaaaa gagtagccaa atcaatatta
     2641 ttatccagat aggttcgaat ttcattttct atcgccttgg cgtcgaattt gcctagaagt
     2701 tccatttacg gaatccaatc tcatggcctg tgtttatatt tttggataat agatatatgc
     2761 aatagatata tattttaatg aacgttcgat acgttaagca aaattgaata tcctaaatac
     2821 actaaagcca ggggagaacc ccccagatga aattaatgca gtaatagaaa ttcctaaagg
     2881 tagcagtatc aagtatgaaa tggatgcaga aagtggagct atatttgtag atagaaaatt
     2941 atttactgca atgttttatc cctgtaatta tggctttatc ccacagacaa gagaagaaga
     3001 tggagaccct gtagatgtac ttgtgcttgg aaacgattct gtaataccaa tgtcgataat
     3061 ccgttctcgc cctgtaggag tattgttaac agaagatgaa gaaggtcaag attcgaaaat
     3121 aattgctgtt cctattacga agttagatcc gagcttttca actgtcacag atattaacag
     3181 tattcctgaa cacatccgtg atcagattaa acatttcttt gagcattata aagaactcga
     3241 aaaaggaaaa tatgtcaagg taataggatg ggatgctaag gaaaaagcaa ataagaagat
     3301 tgccgaagca atagaaaggt acaagaaaga aagaaagtag tggtagtgta ggagtagtaa
     3361 tacttcttaa cactacagaa ttagtctagg taattctact gctctataca aatcatgact
     3421 tcaaaataaa gtgagattga aaaatgtacc tggattaatt gttcatatat cagagcagag
     3481 tggatcatat atatatatta taaatccatt agcactaaag aattattgca agtaattttg
     3541 aatcaggcta tgtaatgtta ttctggtggt atggtcatat cgaggctttt gttgttcaaa
     3601 aatattctcg gaagtcttag gtggtataga aagtaccttc ggaagcatgg aaaatatatt
     3661 gttaccatta cattctatgt caataaaacc atcttgaagt agaatactta aatccttagc
     3721 actaaacctt attgcaagtt cgaggtcaca tttatcacaa tttattttcc attcttgacc
     3781 actcaacagt tgcaacacgt ttgtcttaat tttatcttct atttctttta ccttttgcgc
     3841 aatcttttcg ttatagtatg agtcaaactc tagtggcttg tcaaagtctt cccagttctt
     3901 ctttacttcc tgaaactttt cagttgccat tctctcgatt tgttgtcttt ttgcattcaa
     3961 aaacactttc tcagcttgag ctagagtagt ggtgttcttg tcattatcaa aaatgatttt
     4021 tatctcgttt aagcgaattg catgtgcttt ccattttttt aatttgt
//
LOCUS       DASQSJ010000343         3545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_376960, whole genome shotgun sequence.
ACCESSION   DASQSJ010000343 DASQSJ010000000
VERSION     DASQSJ010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376960"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..678
                     /locus_tag="VE223_06780"
     CDS             160..678
                     /locus_tag="VE223_06780"
                     /inference="COORDINATES: protein motif:HMM:TIGR02087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HZC21332.1"
                     /translation="MNEQPKGKAWVFGDNINTDIIIPFRFKSRTNNPYEMAKYAMYGF
                     DPDFHKKISKGDIVVAGRNFGGGSSREQAPVALKYAGISAVIAESFARIYYRNAFTIG
                     LPALEIPEIKGKINQGDDVRVDITKFTAENIRTKETFQARKVPEFMRQMLLEGGLVEY
                     YKKYKQFPWIQS"
     gene            883..1077
                     /locus_tag="VE223_06785"
     CDS             883..1077
                     /locus_tag="VE223_06785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21333.1"
                     /translation="MQPTCLRDITEDEKKKNNLYDMMDNDAEADYRAKIILLRSEGYT
                     VAEIRRQTDRYTDRQTDKPP"
     gene            1494..1847
                     /locus_tag="VE223_06790"
     CDS             1494..1847
                     /locus_tag="VE223_06790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21334.1"
                     /translation="MPLPSTTKVRLKMNQILEKQYLIGLRIIIKLTVIQPIIFYTRDP
                     SMCVDISDEKSKYAETANQITIYPVCGIVICCSIDRPCICFFEKYDVKTIVPTFPIVC
                     ATLSMSENLIQPYVL"
     gene            complement(2044..3126)
                     /locus_tag="VE223_06795"
     CDS             complement(2044..3126)
                     /locus_tag="VE223_06795"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HZC21335.1"
                     /translation="MGANFINTALYRVYAAMRLGRKDITTITSIVILVTAFTVYSSSS
                     GEQRQIKIIDVKAETLGGRGEVNVLYAASLLSVLETKIGPAFSNLGYDYKGEGHGSIQ
                     DTNMIIDGQRFPDVFISVSSNPINMLINTKPTPLAKWYLGFASDEMVIAYNPKSSFAA
                     DFEKAKTGVMPWFQVLAKPGIKFLRTDPLLDPKGCNTVISTRLADILYHNSSLSSDIL
                     NGGERNSNQLRPEEVLLTLLEQGEADAIPAYKHEAIERGFPFISLPPQINLGDPAFAN
                     YYKQASCTQKDGSLIFGKPIVFDITIPNTVRNNEGAIQFVNFILSKEGTTILQNDGFK
                     TITPLMIGGNVSSIPKEVSSTNIIKS"
     gene            complement(3168..>3545)
                     /locus_tag="VE223_06800"
     CDS             complement(3168..>3545)
                     /locus_tag="VE223_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21336.1"
                     /translation="IQLLDNSIRFVGIANNLGSLIGRAYRNGLVPLMDENETSHYSIQ
                     AVLRAATRQDFESKIGRLEYSIGKYEKIIRATVPIRVNFDDESKFYLLLSFDLKSAVI
                     DDIEEKVVTFIEKNKWKFGSLLV"
BASE COUNT         1214 a          635 c          634 g         1062 t
ORIGIN      
        1 aaataattta aattcatcta tggataaccc atattacata cagatggttt gaatgcaaac
       61 aacatcatca tcaccactgc agctgttaca gcacccagct acagtagcaa cgtcttcaat
      121 tgaaggtaaa atagctgatc caaggaggta cttctgaata tgaacgaaca gccgaaagga
      181 aaagcctggg tatttggcga taatatcaat accgacataa tcataccatt caggttcaaa
      241 agtagaacta acaatcctta cgaaatggca aaatacgcta tgtacggatt tgatcctgat
      301 tttcataaga aaatttccaa gggtgatata gtagtagcag gccgaaactt tggaggtggc
      361 tctagtaggg aacaggcccc agtagcgtta aaatatgcag gaatttcggc agttatagct
      421 gaaagttttg cgcgtatcta ttataggaat gcctttacca tcggattgcc agcgcttgaa
      481 ataccagaaa taaaagggaa aataaatcag ggagacgatg ttagagtaga cataaccaag
      541 tttactgcag aaaatattag aactaaagag acttttcaag ccagaaaagt gccagaattc
      601 atgcgacaga tgttgttgga aggcggatta gttgaatact ataaaaagta taaacaattt
      661 ccatggatcc aaagttaaaa tctttacatt cagtcctgta aaagaataat ttagatggtc
      721 aaaaaacaca agataaggcc acatattcat attcaagcag atcgataact taacagcatt
      781 gtaaaccaca tctagttaat cttgtaaata caatatgatt gaatggatgg ttaattttta
      841 caacaggatc tttagctgac taattcttct aacactttat ttatgcagcc tacctgtctt
      901 agagatatta ctgaagacga gaagaagaag aataatctat atgacatgat ggataatgat
      961 gcagaagcag attacagagc caagattatt cttttaagaa gtgaaggtta cactgtagca
     1021 gaaatacgca gacagacaga cagatataca gacagacaga cagacaaacc accatgataa
     1081 caacataaag aagtggatac acagattcaa cgactatggt attgatggca ttgtatcatc
     1141 aagaaaacat aatcataatc atactactcc aaagataact gatgatatag aaaaggaatt
     1201 gctcaaagta tttggtgtat acgactatac caatgataaa atgtataccc actgctacaa
     1261 acagaagaaa agcagtcagt cagtttatcg cttttatcaa tagggtggat tcatcatgtg
     1321 ataagtatca aacaagtatt catcatagta cttgacaacg cattgattca caggcagaga
     1381 aaacaaggga agctatgaaa aataagcatc caagaattgt actagtattt gtgcctataa
     1441 aagctcctga actcaatcta atagaagcga ggtggtggat atgatgcaga gaattgccat
     1501 tgccatcaac aacaaaagta cgtttgaaaa tgaatcagat attggaaaag cagtatctga
     1561 ttggactaag aattataata aaactcacag taatacaacc aatcatattt tacaccagag
     1621 acccatctat gtgtgtagac atatctgatg agaaatcaaa atatgcggag acagcaaacc
     1681 agatcacgat atatcctgta tgcggaatcg tcatttgctg ttcaattgac aggccttgta
     1741 tctgcttttt tgagaaatat gatgtcaaga ccatagttcc tactttccca atcgtttgtg
     1801 ctacattaag catgtcagaa aacctaattc aaccatatgt cctgtgatga cgattatgta
     1861 attttgttat aaaatttgga atctaatcta acctaacctt ctgctggcaa tcttatcggc
     1921 ttctaatagc agcataaata atgaaagtag aaataaggcg acaggaaatt attatttcag
     1981 gagatactaa atagacagaa cttaacttta tttcttggtt tttgatcaag cacttaatct
     2041 gtatcaactc ttaataatat tagtagaaga tacctctttt ggtatggacg atacattgcc
     2101 tccaatcatt aaaggtgtta ttgttttaaa tccgtcgttt tgtaaaattg ttgttccttc
     2161 cttagagagt ataaaattga caaactgaat tgcaccctca ttgtttctaa cagtatttgg
     2221 aatagtgata tcaaatacta ttggtttgcc aaatatcaaa cttccatctt tttgggtgca
     2281 actagcctgt ttataataat ttgcaaatgc tggatcacct agatttattt gtggaggaag
     2341 gctgataaag ggaaatcctc tctcaatagc ttcatgtttg taagctggaa ttgcatcagc
     2401 ttctccttgt tctagcaatg tcagcaaaac ctcttctgga cgcaattggt tgctattcct
     2461 ttctccgcca tttaatatat ctgaactcaa gctagagtta tggtataaaa tatcagcaag
     2521 tctggtagat atgacagtat tgcagccttt cggatctagc aatggatctg ttcgtaagaa
     2581 tttaattcca ggtttggcaa gaacctgaaa ccatggcatg acgcctgtct ttgccttttc
     2641 aaaatccgct gcaaaactac tctttggatt gtatgcgata accatttcat cagaagcaaa
     2701 accaagatac cattttgcta gaggggtagg tttagtgtta ataagcatgt ttattggatt
     2761 ggagctaacg cttatgaaga catctggaaa tctttgtcca tctattatca tattggtatc
     2821 ctgaattgag ccgtgtcctt cacccttgta atcatatccc aaattgctaa aagctgggcc
     2881 tatcttggtc tccaagactg atagtagtga ggctgcatac agaacattaa cctctcctct
     2941 tcctcctaat gtttctgctt tgacatcgat tatttttatt tgtctttgct ctccagagga
     3001 agaagaatag acagtaaaag cagtcactaa tatcactata gaagtaatag tcgtgatatc
     3061 ttttcgaccc aaacgcatgg cagcataaac acgatacaaa gctgtgttaa taaagttcgc
     3121 acccattagc ccattatata ctactctgga gtagtaggag gataaaacta tactaataat
     3181 gaaccaaatt tccatttatt cttttctata aaagtgacaa ctttttcttc aatatcatct
     3241 attacagcgg atttcaaatc aaatgaaagt agtagataaa atttgctttc atcatcaaag
     3301 tttaccctaa ttggtacagt tgctcgaata atcttttcat atttccctat cgaatattct
     3361 agtctaccta tttttgattc aaaatcttga cgtgtggcag cacgaaggac agcttgtata
     3421 gaatagtgcg aagtttcgtt ctcatccatt aaaggaacta agccatttct gtatgctctt
     3481 ccaattaagc tacctagatt attggcgata cctacaaatc taatggaatt atccagtagc
     3541 tgtat
//
LOCUS       DASQSJ010000344         3246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_238604, whole genome shotgun sequence.
ACCESSION   DASQSJ010000344 DASQSJ010000000
VERSION     DASQSJ010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238604"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            404..1963
                     /locus_tag="VE223_06805"
     CDS             404..1963
                     /locus_tag="VE223_06805"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC21337.1"
                     /translation="MLWIAALFSYVGAAMYDVGASWLMTSIAPNPLFVSLVTTATTLP
                     IFLFALPSGILSDIFDRRKILLITCAYMFTISTILGILTFIGLTTPTILLIFTFALGV
                     GTTMIRTPIIPTMSGLVRRSELPAALTLSALASNIGRVIGPTIGGFIVAAIAPWAVFF
                     LNSSAFIGMIIVLTRLPRKPNVQQQQSSLPPENIIRAIRVQIRYIRYSQAAHVLIVRA
                     GLFTLCSSALLSLLPLLAKRDLGLDSTGFGVLLGSFGMGAIIGGILILPRLRPKASVE
                     SLITGSIALLAIVTFTMGYARDFGILCILMGLGGVAYITIISKLYTIGIKSAPKWIGA
                     RVLAVYLLVLNGGLVVGSVIWGTVANVFGIPFTLLIASLASGATIIAKKRYSVTLLDD
                     LDFTPASDHWSLPPQSSVDPLQNENQALITIEYNKIDPKLSDEFERTIYELGRLLRSE
                     GMAYWELFRDPSDMSHYIEIRIADTWTDHIRQHEYVTKNIKVMENRIRELIKDCPQPI
                     ISHYIGNSPSK"
     gene            complement(2352..3080)
                     /locus_tag="VE223_06810"
     CDS             complement(2352..3080)
                     /locus_tag="VE223_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21338.1"
                     /translation="MIDEGTEKRWLFDTLRYNLQNFSDGLQLEDKDFESSIDKYVSFL
                     LQIRNNLLALVGFVATIAVSLGTISLLNNQQLLWILTPDFVVGIAVYLIINIILIRIQ
                     KVLSPIREAYDVTENITQLLKGFLGSVPFFLEVETTNQLKLMNIYVSLVMNSRFMLAS
                     SYSLASKSKFLILHRTSLSNSAAQNNRAIQSAYDKIYKTKRQELITDPLITNVEKEII
                     RNFDLSPLKGFETLWTNEHNAMVT"
BASE COUNT         1009 a          607 c          596 g         1034 t
ORIGIN      
        1 agcatgcagt aaatgcatct cgaaaagttt ttttgacgat cgcttgacat tgactacaat
       61 catcaattaa tactctctag ctttgtatat gcgcttcgat aatcgtactc gcaaaatacg
      121 ccatatgtga tcagcattag ggtaaaaaga aattgttaat aacaaatctt tatgtcagac
      181 cttgggcact ccaagtatta cctttaacaa tacatatact atagaaggct acgttcttcc
      241 actggttaag ttaacacgac tgtctgatag taaggtattc tttaattgct ggagcatgaa
      301 ataattattt tgaaattgta tggttgaaag agataggcag gaagacaaac aagaaaatat
      361 ttcagcgtca ggattgagtc ctttcaaatc tagtatctat agaatgttgt ggattgcagc
      421 cctcttttca tatgttggtg cagctatgta tgatgtaggg gcatcatggc taatgacttc
      481 cattgcacca aacccattgt ttgtttctct cgttacaact gctaccactt tgccaatttt
      541 tttatttgcg ttaccatccg ggatattatc cgacattttt gataggcgca aaatactcct
      601 tatcacctgt gcatatatgt ttacaatatc cactatacta ggaatcctca cctttattgg
      661 tctgactacc ccaacaatac ttttgatatt tacttttgca ctaggagtag gtacgactat
      721 gattaggact cccattatcc ccactatgag tggattggtt agaagatcag aactacctgc
      781 cgctctaact ctcagtgccc ttgctagtaa cataggtcgg gttattggcc caacgatagg
      841 tggttttatt gtagctgcaa ttgcaccttg ggcggtattt tttcttaatt catctgcctt
      901 tattgggatg atcatagtcc taactagatt gccaagaaag cccaatgttc aacaacaaca
      961 aagctctctg ccgccagaga atataataag agctattcga gttcagatac ggtatatacg
     1021 ctattctcaa gctgcgcatg tattaattgt acgtgcaggt ttgtttacat tatgtagtag
     1081 tgcattgtta tctctcttac cactattagc taaacgtgat ttaggacttg attccaccgg
     1141 atttggagtg ctattaggat cttttggtat gggtgccatt atcggtggaa ttctaatttt
     1201 gccaaggtta cgacctaaag cttcggtaga atctcttatt acaggctcta tagcgttact
     1261 tgcaattgta acctttacaa tgggatatgc acgagatttt ggaattcttt gcatattgat
     1321 ggggctagga ggagtagcct acatcacgat aatatcaaaa ctttacacaa ttggaataaa
     1381 atctgcacca aaatggattg gagctagggt attagcagta tacctgcttg tactaaatgg
     1441 cggcttggta gttggaagcg taatatgggg tacagtagct aacgtatttg gtatcccatt
     1501 cacactttta atagcttcat tagcctcagg tgcaaccatt attgctaaga agcgttatag
     1561 cgttactttg ttagatgacc ttgattttac accagcaagt gatcattggt cacttcctcc
     1621 tcagtcctca gttgatcctt tacaaaatga aaatcaagct ctaataacaa tcgaatacaa
     1681 caagattgat cccaaattat ctgacgagtt tgagcgtact atatatgaat taggacgtct
     1741 tcttagaagt gagggaatgg catactggga attattccga gacccatcag atatgagtca
     1801 ctacatagaa atcaggattg ctgatacttg gactgatcat atccgtcagc atgaatatgt
     1861 taccaagaac attaaagtta tggaaaatag gatacgtgaa cttatcaagg actgtcctca
     1921 accaataata tcgcattata taggaaattc tccttccaaa tagcttttaa gtatatagta
     1981 ctacgacata tctctacaaa tgatcttata aagaggaagg atccaagcaa tggcatatga
     2041 gctgcaactg cactagagat gaccaccatg agtgaatcac ccatgggatt tccactaacg
     2101 aaatctcata gagagaagat atttccgaaa ctgacgccag ctaagattga tagtattgta
     2161 ttgtatggat gtatgcgttc ggtacagtct ggagaagtgt tattagatca aggagataaa
     2221 attttattat atcaatggga tataaaatac aaaatacaaa agacagtcta taatcaagca
     2281 tggtatcaag tttacaccaa aatacaaagt ggtcatgagt catcattttc atgctcttat
     2341 ccgctctctg actacgtcac catggcatta tgttcatttg tccataacgt ctcaaatcct
     2401 ttaagagggg ataggtcgaa gttccgaatt atttcttttt caacattagt tatcaatgga
     2461 tcagtaatca gctcttgtct cttggtttta tagatcttgt catatgcaga ttgaatggct
     2521 ctattatttt gtgcagcgct attagaaagt gaagtccgat gcaaaatcaa aaatttcgat
     2581 ttagatgcta gagaatatga gctcgctaac atgaaccggc tattcataac caatgatacg
     2641 taaatattca tgagtttcaa ctgattagta gtttcaactt caagaaaaaa aggaacagat
     2701 cctagaaatc cttttaatag ctgagtgata ttttcagtca catcgtaagc ttcccttata
     2761 ggacttaaca ccttctgtat tcgaattagt ataatgttga ttatcaaata cacagctatt
     2821 ccaacaacga aatccggagt gagaatccat aaaagctgct gattgtttag tagtgagatt
     2881 gttcctagac taacagcgat cgttgcaaca aaacctacaa gtgctagcaa attattacgg
     2941 atttgaagta agaaagacac gtatttgtca atggaactct caaagtcctt atcctctaat
     3001 tgcagcccat cagaaaaatt ttgtagatta tatcttagag tatcgaagag ccatcttttc
     3061 tctgtccctt catctatcat aagattctac ctccaagcaa attctcacaa gcaattagat
     3121 atcttttgtt cacacattag taaacactaa gatatagaat atagcataga ataatggaac
     3181 gaatttgttt gtaatcgtat acaataatcc catttgtcct tatgtcttcc tgctaagtca
     3241 acttgt
//
LOCUS       DASQSJ010000345         2271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_297781, whole genome shotgun sequence.
ACCESSION   DASQSJ010000345 DASQSJ010000000
VERSION     DASQSJ010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297781"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(599..673)
                     /locus_tag="VE223_06815"
     tRNA            complement(599..673)
                     /locus_tag="VE223_06815"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(636..638),aa:Val,seq:tac)
     gene            880..1407
                     /locus_tag="VE223_06820"
     CDS             880..1407
                     /locus_tag="VE223_06820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HZC21339.1"
                     /translation="MNTYSLTMSSGLDHLEGSMEKLKQMINNIQEEYESFIDSNQLYK
                     QGKVNEREFFVSIGNYLVAMSTMNFLAIQVIFEIKSAIEKKSTNKSGQDRVPSKNDVE
                     VSGAVSKPAGIGEYMLPKPQQLHSQDLYTPPSPDPRQTSKINGEEANVTKNCISCGVA
                     IPKKAKFCSRCGKSQ"
     gene            1439..1891
                     /locus_tag="VE223_06825"
     CDS             1439..1891
                     /locus_tag="VE223_06825"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HZC21340.1"
                     /translation="MMKAFNGRAASEEYMSTHSLTFSTPEMTLKKFVLWLGEQVTNPS
                     SKEQVPRLMLYIEEKTTNNTIGKENPNLMPDIDDTFRPSGAVTEMYGGIPSSSPSSIS
                     YPTNDITLPKKGSIDKKISDSDTKFCFECGSNLKANSKFCRNCGTKQE"
BASE COUNT          743 a          415 c          396 g          717 t
ORIGIN      
        1 tattttggta atgcaaagcc attgctctta gatgatttgt tcttggatcg actgtagcaa
       61 aagggatgtg agggatgcct cctgttatta ttatagtacc cttgtcatat cttaatatag
      121 ttttgagcat tcttttttac agtattataa gcaaagcgca ttaaaagttt ttagcataaa
      181 agttcggacc aacgaaatca tttatcttaa tagttaattt ttcgatccac atgtagtttg
      241 tcgctataga agccgtataa ctcttgttct tttctcagtt cctattatga tataggttat
      301 gaataataaa ttccaaagga gcagtactat cagtcattgg aatttggtga ggtacctaaa
      361 agcaagatat aacaaaatta ggaatttttc atactctcaa caaactggaa gctggttgag
      421 ggagcctttc gtccctattc aggttaagat aatgaaagac atgacattgc ttttctcaaa
      481 ataagaatgt aaacttacag cttgtggata ccaagtaccg ccatcggtat agacactttg
      541 taatccttgt ttcaccacca gttatctata aagtgtgtga atatatccat gaccattatg
      601 gagggaatgg gatttgaacc cacgaccacc tgcgtgtaag gcaggtatcc taaccagtct
      661 agactacccc tccgtagtca tatccaggtc aacttgagcg taacgctatt aaatatgtta
      721 tctgagtctt cataattgta tgatacatca aataaacatc taaattttga tattctactt
      781 gtatcatagt aattcgttta aaatgtggat atgccatcta tttacagctt gattgagtgt
      841 catatatttc tctaacaatg tgacattttt attaaattga tgaatacata ttctctaaca
      901 atgtcttctg gcctagacca tctcgaagga tcgatggaga aattgaagca gatgattaat
      961 aatattcaag aagagtacga gtcatttatt gattcaaacc aattatataa acaaggaaaa
     1021 gttaacgaaa gggaattctt tgtttcaata ggcaattatc tagttgcgat gtctacgatg
     1081 aatttccttg ctattcaagt aatctttgaa ataaaatctg ctattgaaaa gaaatcaaca
     1141 aacaaaagtg gacaggatag ggttcctagt aaaaatgacg tcgaagtcag tggtgcagtg
     1201 agtaaacctg cggggatagg cgaatatatg ctacccaaac cgcagcagtt gcactcacag
     1261 gatctataca ccccaccaag tccagaccca aggcaaacct ctaaaatcaa tggcgaagaa
     1321 gctaatgtta caaaaaattg cattagttgt ggagttgcaa ttccaaagaa agcaaagttt
     1381 tgcagcaggt gtggcaagtc gcaataatta aaatatacat ttcggcatat tgcttctaat
     1441 gatgaaggca ttcaacggta gagctgcaag tgaagaatac atgtctactc actcactaac
     1501 cttttccact ccagaaatga cattaaagaa atttgttcta tggttaggcg agcaggtcac
     1561 taatcctagc agcaaagaac aagttccacg attgatgctc tatatagagg agaaaacaac
     1621 caataatact ataggtaaag aaaaccctaa tttaatgcca gatattgatg atacttttag
     1681 accttctggt gccgttactg aaatgtatgg tgggattcct tcttcttctc cttcttctat
     1741 ttcttaccct accaatgata ttactctacc aaaaaaaggc tcaattgata agaaaatctc
     1801 agattcagat accaaattct gcttcgagtg cggttctaat ctgaaggcga actcaaagtt
     1861 ctgcagaaat tgtggaacca aacaagaata aatctagaac atgtcatttg aatctactct
     1921 ctattggttt cttctgtttc cttcgacaac atatagcatt cattgcatat cgattttgaa
     1981 aagataaagt tcaatagata aaatctaagt ctcccacagg attcgcattt tcgcatacgc
     2041 caattcctac agacttatcc ataaatctag ctactgctcg tttaattact atcctaagac
     2101 ttaaaacaac tgcaataata ttggtctcac actttcattg acagtattgt tgtcagtccg
     2161 ggttttaagt agacttttca tctttgctac ggttttctct attctgtata ctactatact
     2221 ttaaattatc gttgggaaga atttggtcat cttgcaaaat gaatcacaga t
//
LOCUS       DASQSJ010000346         2065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_61540, whole genome shotgun sequence.
ACCESSION   DASQSJ010000346 DASQSJ010000000
VERSION     DASQSJ010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61540"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..434
                     /locus_tag="VE223_06830"
     CDS             252..434
                     /locus_tag="VE223_06830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21341.1"
                     /translation="MVKVNGKLHGRTTHYKDRDEPCDLCGVFPGGIHHLGCDAEECPV
                     CSKQFTVCECNDVEYY"
     gene            complement(1110..1304)
                     /locus_tag="VE223_06835"
     CDS             complement(1110..1304)
                     /locus_tag="VE223_06835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21342.1"
                     /translation="MINYSGPSNRFVATNPKNGHERIVVDREDARHLEIFMNGSWRHI
                     QEKCREYTNKDCRKKTYLNY"
     gene            1877..2044
                     /locus_tag="VE223_06840"
     CDS             1877..2044
                     /locus_tag="VE223_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21343.1"
                     /translation="MEENVDAKSKVSINVKQVNDEIEEIIASKISQFGKGFKIPDDLK
                     KDKKNKEQHNN"
BASE COUNT          671 a          375 c          358 g          661 t
ORIGIN      
        1 ttttattcca taaattgcca agacagcaat agtctgtctc ctggatggtg acttgttttt
       61 tactctgtag ctttaataaa tcgttctact cttgctcgaa ttttatttgc aactacattt
      121 tttataaaca ttcaaattgg atttttgaat gacttaaaag aaggtaatat gccatacata
      181 tcataaaaaa atgtacaatc tgtcatagag ggagaaagaa agatagccat tttaatacat
      241 gcaaagtgaa aatggttaaa gttaatggga agctgcatgg acgtacgaca cattataaag
      301 atcgagatga accatgtgat ctttgtggag tattccctgg aggcattcat catcttggtt
      361 gtgatgcaga agagtgtcct gtgtgtagta agcaattcac agtttgcgaa tgcaatgatg
      421 tagagtatta ttaaaaaagt gatcgggata taatctatcc atgtatttaa tgtattgtat
      481 gtcttctttg gagaataata agtttcttat ataatatact actagatccc gaattgtagg
      541 cccttatact atattattaa atattttatt agcccagcag gagtgcaaaa tgaagtgcaa
      601 attgcatgtc caaccaatca tcgcattagt agttttggca ttaggattgt cctctttaat
      661 gaccattatt tttgtttcat ccagcacaca attagtatat gcagctatga acaataacaa
      721 cgtattacct actcaaggat cgctgccttc ctcggcttca ccaacaaatc caacttctac
      781 tcatccattg tgtcaaacag gatcatattg gagtcctcat tctaacgctt gtatcgagtt
      841 tcatacttgt caaacaggat catattggag tccacataac aataagtgta tgcctaaatg
      901 cgaagcagga tcatatttga gtctacataa caataagtgt atgccaaggg tacaacgaac
      961 tcctatccca tgacaaatac aaatattttt tattttgccc tctcgctatt aattcgtact
     1021 tcgttgggaa ctttatcgga gactcgctct tctctacctg ggatccacct tcgatataac
     1081 tactagaatc aatgctaatg ctgacgtctt tagtagttta agtatgtctt ttttctgcaa
     1141 tccttgtttg tatattcccg acatttttct tggatgtgtc tccagctacc gttcataaat
     1201 atttcaagat gtctggcatc ttccctatca actacaattc tctcatggcc gttcttgggg
     1261 ttggtagcaa caaatctgtt tgatggcccg ctataattta tcatgatgat acttcgtcaa
     1321 ccttacacat aagtactgtg ccatgagact agtacctgac atccgcgtat ctcaatcaat
     1381 caacatcatc attaaaccat ctgaagactg tcgacaaaat attgtttcaa ggtaacatag
     1441 gtgagcaaaa gaagttagga aatgagatat gatatgggtc gaaatactca atatagagat
     1501 cgtgaacaaa gacagataat aacaatgatg atcaagtcca ccctattagg tcatgacagt
     1561 acttttgtta tcatcaacta atcttttgtg ctgctctttt acatcttctc aaactgccaa
     1621 agtccttgca cgctgtaaaa aatattctct aggccataat atatcatcaa gtgttttcct
     1681 tgaattgcat aaatgagtct atgctgtatg gagtagccta acctgagcgc cgacgcatta
     1741 ttagttaagg tggaccagaa gatacgatgt ttcgctttac agatggatgc aacctctact
     1801 atgaggatat atataaataa agcacatgat tttagatcat agttaaatta aaggtaatcg
     1861 tattctctat tactatatgg aagaaaatgt cgatgcgaaa tcaaaggtat ccatcaatgt
     1921 caaacaagtt aatgatgaaa tcgaagagat catagcgtca aaaatcagcc aatttggtaa
     1981 ggggtttaaa attccagatg atctaaaaaa ggataagaaa aacaaagaac aacacaataa
     2041 ttgatactaa ttcagaattc atatg
//
LOCUS       DASQSJ010000347         5990 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_418454, whole genome shotgun sequence.
ACCESSION   DASQSJ010000347 DASQSJ010000000
VERSION     DASQSJ010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5990
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418454"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..390)
                     /locus_tag="VE223_06845"
     CDS             complement(34..390)
                     /locus_tag="VE223_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21344.1"
                     /translation="MNHTTIGVTLVVATIAIIVVANLGPVQQQPKSRSQLQFSASNLT
                     LAAVNQHSMQPMLKLVVGKGESHYPTPQEKITIDRTINQTLSMLKPLGRMINESHTCI
                     LEAVVCDNRNTNSATA"
     gene            682..1629
                     /locus_tag="VE223_06850"
     CDS             682..1629
                     /locus_tag="VE223_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HZC21345.1"
                     /translation="MTKPFKEALYKQILLFDGAMGTEIQKLSPKLEDFVDKRDGFNDS
                     LILSRPEWVKQIHVNYLKAGADCIETNTFGSNKLKLGEYGYGDKTVEFNKRAAELARE
                     ACNIFTDKPRYVIGSMGPTGYLPSSDDPDLGQKSLDEIKEAFVLQAEGLILGGVDALL
                     IETSQDILEVKLAIDASHDAIRKVGRGVPIIANVTLDQYGKMLLGTNIQSAYTTVCDM
                     GIDAFGLNCSTGPVEMTPSVRWLSEQDELPILVMPNAGMPQNEDGKAVYKMTAKEIAE
                     KLEDFVQSYKNIRIIGGCCGTNPSHVSELRKMLDRQKQP"
     gene            1669..4188
                     /locus_tag="VE223_06855"
     CDS             1669..4188
                     /locus_tag="VE223_06855"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HZC21346.1"
                     /translation="MKTVPRISSALKALDLRQEPPPLIIGERLNTQGSRKAKEMVLAN
                     DYDGLVNLARKQVEDGAHCLDVCVATTERSDELDFMRNLVKRLSLEIDAPLVIDSTDP
                     KVIEAALKQIPGKPIINSINLEGDGSRFHSLAPLMVKYGVPAIAMCIGPKGMAKTIEE
                     KIATAELLFETGKKYDLQPWQFIFDVLTFTLATGEPEFSDSAKATLESIRVVKEKVQG
                     CFTTLGLSNVSFGLPVHARKIVNSVFFYHAVKAGLDTVIINAKDIIPYAEIENVQRKL
                     AEDLIFNTHPNALAELISYFEDLKSLPTASTVKRLYVDPSWPADKRCYFRIVNRIKEG
                     IEDDVVAAIAARVPDNVNLKAIRKDMDRLILEAPKQDAHNAAVQTLNDTLLPAMKEVG
                     DKFGSGELILPFVLKSAECMKAAVAELEKYLIRKEGVSKGRVVLCTVLGDVHDIGKNL
                     VRTIFINNGYTVYDLGKQVPLQTILEKINEVNADAVGLSALLVSTSKQMQYFVEHAKQ
                     NNIKIPVLCGGAAINSSYINRIAKVGGIYSPGVFYCKTAFDGLTVINKLMSKERVDFI
                     SEWRQKLEQWEEKRPTPVEPLGLLHSDVKPVPPPIPPHINKQIRLEPEQIDLYKIWNF
                     INKKSLFVLSWGIRGKNAKPFSKENEEHFEIWKEKVIKEKLFEPRAVYGYFRCHNIDG
                     KLVVDLAEDDGRVVFDFPRSSKGKHLCLTDYFGKDDIVSFQAVTVGDKVTEVIDYWNK
                     DDRYTDAYYLHGLAVETAEALAEWVNLKIKNELNIGIKRGLRYSWGYPSCPDLAQHHL
                     VWKLLDPTKSGMRLTDSGQIIPDQSTAAIIVHHPDAEYFVL"
     gene            4319..4642
                     /locus_tag="VE223_06860"
     CDS             4319..4642
                     /locus_tag="VE223_06860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21347.1"
                     /translation="MTIYGFALACAIDESPPYFTYYDHTMLIIQSKDHAKSKIDDFQY
                     IEPFIEALISHESIHVVIKDLEGANTSDSLDDVEIIVERHRAKFQVTLNNMLFAKDMS
                     GIVTP"
     gene            complement(4802..5101)
                     /locus_tag="VE223_06865"
     CDS             complement(4802..5101)
                     /locus_tag="VE223_06865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21348.1"
                     /translation="MMQINNNRKISNTDSNDNAPYIKEERDMELENIVGNMMIAQYQV
                     DKLRSRLSERISGYGSASNKKASAHIFRQNDKWYKVTIKVDEMTTHYPEVDEDVK"
     gene            complement(5088..5231)
                     /locus_tag="VE223_06870"
     CDS             complement(5088..5231)
                     /locus_tag="VE223_06870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21349.1"
                     /translation="MGIVVEHEEKGCDVERVPMCDAILSSSIESGTPYRRNSLENGRH
                     DAD"
BASE COUNT         1894 a         1035 c         1199 g         1862 t
ORIGIN      
        1 tcgttcttta ctctttctct taaactataa atttcatgct gtcgcactgt tagtgttcct
       61 attatcgcat acaacagctt caaggatgca agtatgtgat tcgtttatca ttctcccgag
      121 tggttttagc atactaagtg tttggttaat ggttctatct attgtaattt tttcttgtgg
      181 tgtaggatag tgagattctc ctttgcctac aacaagtttc agcattggct gcatgctatg
      241 ctggttaact gcagcaagag tgaggttact cgctgagaat tgtagttgtg aacgggattt
      301 tggctgctgt tgtaccgggc caagatttgc tactactata attgctattg ttgccactac
      361 tagagtgact cctatcgttg tgtggttcat atcttcttta gttctattag ttagaatcta
      421 tatatttgaa atacgcagat tattacatta tttttctttt gaattaaata atagatactt
      481 cttagtaggt caaaagatat taatttaatt ctagaattag atattatgat tttctaataa
      541 ctactgagta tatacattat acattattag aaggatatga tttattctta ggtttgatag
      601 tgataatcga tatcttctaa tcgagagcgc tgctaaatga aaaactatta actctagagc
      661 ggacactgga tatatagttt aatgacaaaa ccatttaaag aggctcttta caagcagatc
      721 cttctttttg acggggcaat gggaacagaa attcagaaac tgagcccaaa gttagaagac
      781 tttgtagata aaagagacgg ttttaatgat agtttaattc ttagcagacc ggagtgggtt
      841 aagcaaatcc acgtaaatta tctaaaagcc ggagcagact gtattgaaac aaatactttc
      901 ggcagcaaca agttaaaact tggagaatat ggatatggtg acaaaacagt tgagtttaac
      961 aaaagagccg ctgaacttgc aagagaggct tgcaatatat ttacggataa gccaaggtat
     1021 gtgataggtt ctatgggtcc gacaggatat ctgccaagtt ccgacgatcc agatctgggc
     1081 caaaagtcac ttgatgaaat aaaggaagcg ttcgtattgc aggccgaagg attgatttta
     1141 ggaggggtcg atgcgctatt gatcgaaacc agtcaagata tacttgaagt taaactcgca
     1201 atcgatgctt ctcatgatgc aatacgaaaa gtaggtcgtg gggttccaat tattgccaac
     1261 gttacgttgg accaatatgg aaaaatgcta cttggaacaa atattcagtc tgcatatacc
     1321 acagtatgtg atatgggtat tgatgcattc ggcttaaact gctcgactgg acctgtggaa
     1381 atgactccca gcgtgagatg gctaagtgaa caagacgaat tgccgatact agttatgccc
     1441 aatgctggca tgcctcaaaa cgaggacggc aaagcagtat ataaaatgac agctaaagaa
     1501 atagcagaaa aactagagga ttttgtccaa agttataaaa atatacgtat aattggagga
     1561 tgctgtggaa ctaatccttc acatgtatct gaactgcgca aaatgttaga tagacaaaaa
     1621 caaccgtaac attttagata ggtttagctg actagagcct aatacttaat gaagactgta
     1681 cctagaatta gttcagcatt gaaggcgtta gacttgaggc aggaacctcc accattgata
     1741 attggtgagc gcctcaatac ccaggggtct aggaaggcaa aagagatggt actcgccaac
     1801 gattatgatg gacttgttaa cttagctaga aaacaagtgg aagatggcgc tcattgcctt
     1861 gacgtctgtg tagctactac tgaacgctcc gacgaactcg acttcatgag aaatctggta
     1921 aagcgtttaa gtttggagat agatgctcca cttgttatcg attctacaga ccccaaagtg
     1981 attgaggctg cgctaaagca aatcccaggc aaacctataa tcaactcgat caaccttgaa
     2041 ggtgacgggt cgagatttca ttcgcttgct cctttgatgg tgaaatatgg cgtccctgct
     2101 atcgcaatgt gcataggacc caagggtatg gcaaagacca tcgaagagaa gattgcgacc
     2161 gcagagttgc tctttgaaac aggtaagaag tatgaccttc aaccatggca gtttattttc
     2221 gatgttctga ctttcacact tgcaacaggt gaacctgaat tctcagattc agcaaaagct
     2281 acccttgaga gcatacgcgt agtaaaggaa aaagttcaag gttgttttac aacacttggc
     2341 ttaagcaacg ttagttttgg tctacctgta catgctagaa agatagttaa ttctgtattt
     2401 ttttatcacg ctgtcaaagc tggacttgac acagtaatta ttaacgcaaa agatattatt
     2461 ccatatgcag agattgagaa tgtacagcga aaattagcag aagatcttat tttcaatact
     2521 catcctaatg cacttgctga actgatctct tatttcgaag acttaaagtc attgcctact
     2581 gcttccactg ttaaaagatt atacgtagat ccaagctggc cggcagataa gcgatgttat
     2641 tttagaatcg ttaacaggat taaggaggga atagaagatg atgtagtagc tgcaatagca
     2701 gccagggtcc cagataatgt caatcttaag gcaattagaa aagatatgga taggctgata
     2761 cttgaagctc caaagcaaga tgctcacaac gccgccgttc aaaccttaaa tgatactctg
     2821 ctaccggcaa tgaaagaagt aggcgataaa ttcggatcgg gtgaacttat tcttcctttt
     2881 gtattaaaat cagccgagtg catgaaggct gcagttgctg aactagaaaa atacctgata
     2941 agaaaagaag gagttagtaa gggcagggta gtactgtgta ccgtacttgg agatgttcat
     3001 gatataggta agaatctcgt aaggactatt ttcataaaca atggatatac agtatatgac
     3061 ctcggcaaac aggttccatt gcaaacaata cttgaaaaaa ttaatgaagt taacgcagat
     3121 gcggtaggcc tttccgcatt gcttgtgtca acttcaaaac aaatgcagta ctttgtcgaa
     3181 cacgcaaaac aaaataatat aaaaattcct gtattgtgtg gaggcgcagc tattaatagt
     3241 agctatataa atcgaattgc aaaagttgga ggtatttata gtcctggggt gttctactgc
     3301 aaaactgcat ttgatggatt aacggttata aataaactta tgtcaaaaga gagggtggat
     3361 tttatttcag agtggcgaca gaaactagag cagtgggagg agaaaaggcc aactccagtg
     3421 gagcctctag gtctactgca tagtgatgtg aagccggttc cacctcctat tccaccacat
     3481 attaacaaac agataagatt agaacctgaa caaattgatc tctacaagat atggaatttt
     3541 attaataaaa aatccctatt tgtgctttct tggggtattc gtgggaaaaa tgccaaacct
     3601 ttcagcaaag aaaatgagga gcattttgaa atatggaaag aaaaggtaat taaagaaaaa
     3661 ttatttgaac caagagcagt ttacgggtat ttcagatgtc ataatatcga tggaaagcta
     3721 gtagtagatt tagcagaaga tgacggacgt gttgtctttg attttccaag gtcctcaaaa
     3781 ggaaaacact tgtgcttgac agattatttt ggaaaggatg atatagtgtc ttttcaggca
     3841 gtcactgtag gcgacaaggt aacagaggta atagactatt ggaacaaaga tgataggtac
     3901 accgatgcat attatttgca tgggttagct gtggagactg ctgaagcatt agcagagtgg
     3961 gttaatttga agataaagaa tgagcttaac atcggcatca aacgtggtct aagatatagt
     4021 tgggggtatc ctagctgtcc tgatctagct cagcatcatc tggtctggaa gctgttggat
     4081 cccaccaagt caggtatgag attaactgac tctggacaaa taatacctga tcagtcaacg
     4141 gcagcaatca tagtacatca ccccgatgca gaatactttg tgttgtaact gatgtggcac
     4201 accataactt taaatttttt cataacggtc cctacaaaac gaaatattct actctgatat
     4261 gtagaaagtt actatatata ttattcattt tagattaaaa gtgtgagcat tatatataat
     4321 gaccatttat ggatttgctt tagcatgcgc aatagatgaa tctccgccat atttcactta
     4381 ctatgatcat acaatgttga ttatacaatc aaaagatcat gcaaagtcta aaatagatga
     4441 ctttcaatat attgaacctt ttatagaagc gttaatttca catgaatcta ttcatgtcgt
     4501 tataaaagat ttggaaggcg caaacacctc tgactctttg gatgatgtgg aaataattgt
     4561 agagcggcat agggcaaagt ttcaagtgac tttgaataat atgctattcg caaaagatat
     4621 gtcgggaata gttactccct agttatcata gctttaacca caaataatat atttgtaata
     4681 tatattcctg ccatctatag ctattatgca attggctaac cgccaggatt actttgaacc
     4741 tcaagcatgt gaagaaatat gtgtgttacg ctcgtaacac acatttttat gatgcttgta
     4801 tctactttac atcttcatcc acttcgggat aatgtgtggt catttcgtct acttttattg
     4861 taactttgta ccatttgtca ttctgtctga atatatgcgc agaggccttt ttgttgcttg
     4921 cagaaccata gccacttatc ctttcactca acctagatct tagtttgtca acttgatact
     4981 gagcaatcat catattgcca acaatatttt caagttccat atccctttct tctttaatat
     5041 acggagcatt atcattgcta tctgtattcg aaatttttct gttattatta atctgcatca
     5101 tgccttccat tttctaatga atttcgtctg tatggtgtgc cagattcaat agaggacgat
     5161 aggattgcgt cacacattgg tactctttct acatcacatc ccttctcttc gtgttcaaca
     5221 acaatgccca ttgataatat ccagaaatat aactataata atagataagt aaaattctta
     5281 cataataaaa taaactttaa aaccagatcg tgatgagttt aactatttct tcctgcaatc
     5341 tttgttggta tattcacggc acttttcttg actatgtctc cagctgccat tattaaagat
     5401 ttcacgatgt ttcgtatcat ctctatcaac tatgattcgc tcatggccat tcttggggtt
     5461 ggtagcaaca aatctatttg actgaccgct attatttctc atgaggatac agcataaacc
     5521 ttacataaga actatttgga tttagcatta atgtataaaa actttacaag cctttaatat
     5581 ggactgtgac agtcttatat tggcatcgct gcttcttatt atagtgctca ctgtgacatt
     5641 gggcttagtg ttgaaaacac aattacttta tttcttcacg gtgtttttac aaattaagac
     5701 ctttggatag atgaatcatt atttttctta atcgatcttg tatatgcgta ttctttagta
     5761 tattaagtca tgttttatga tacttatagt tactatatgc ttgataaaaa gctatatgtt
     5821 atttattgtc agggcggctt atatttacga agtgtcatca ggatcatctg actgctaaaa
     5881 taaggactgt caatagtgct aaacttcgca tctggaattt atattattgc ctgatttcct
     5941 aaaagaagaa ttaaatacca agtaattaac agtgtttaga tgttacatcg
//
LOCUS       DASQSJ010000348         2074 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_536983, whole genome shotgun sequence.
ACCESSION   DASQSJ010000348 DASQSJ010000000
VERSION     DASQSJ010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536983"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..629
                     /locus_tag="VE223_06875"
     CDS             213..629
                     /locus_tag="VE223_06875"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HZC21350.1"
                     /translation="MSKHTNNEITDASTRKLFEGKNFAFVSTLMRDGYPQITPTWVDI
                     EDGNILVNTAIGRIKQKNVSRDPRLSIAIADQNNPYDMVTVRGKVIEQITGDAADKHI
                     DKLAKKYLGKDKYPNRAPGEKRVILKVKPERVFHMK"
     gene            complement(1171..1536)
                     /locus_tag="VE223_06880"
     CDS             complement(1171..1536)
                     /locus_tag="VE223_06880"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HZC21351.1"
                     /translation="MAKVMNESPKIVVSKTLDGVKEDEGNWKNVTIIRDLNHDTITKH
                     KEGEGSGTGVITILGSGSIIQQLANMGFIDEYELVVVPIILGNGKYLFKDVKMTEMNF
                     VESRSFKNGLVSLRYQQAR"
     gene            complement(1581..1757)
                     /locus_tag="VE223_06885"
     CDS             complement(1581..1757)
                     /locus_tag="VE223_06885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21352.1"
                     /translation="MRKISVFIHVSLDGFFAGPNDELDWFKVIKKDPEWEKHTYRESH
                     TGSTLLLDATTYKW"
     gene            complement(1788..2027)
                     /locus_tag="VE223_06890"
     CDS             complement(1788..2027)
                     /locus_tag="VE223_06890"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HZC21353.1"
                     /translation="MKLKSESGKDIVVYGGAMLDSSLIKAGLIDEFHLFINPVAIGSG
                     MAIFKDMNEIRKFTLVKSAPFDCGIVELQYEPKRN"
BASE COUNT          644 a          401 c          350 g          679 t
ORIGIN      
        1 gagaaatcaa aggctttcct ctttctagta ttataatttt tctttagcgt ggatctgttt
       61 tgcacaatac acgataggtt atttattttc aatagctatt tgtgattctc attttcgctt
      121 ttctgttctc ttactctagt cttcataaaa agaaaacaaa ttcttgacaa ttattataga
      181 atagttatta gatgtgttag acattggata atgtgagcaa gcatacaaat aatgaaataa
      241 ccgatgcttc taccagaaag cttttcgaag gtaagaattt cgcttttgta tctacattaa
      301 tgagagacgg ttatccccaa atcacaccta catgggtaga tattgaggat ggcaatatcc
      361 ttgtaaatac tgcaattgga agaataaagc aaaagaatgt atccagagat ccgagattat
      421 caatagctat tgctgaccaa aataatccat acgacatggt tactgtgaga ggaaaggtaa
      481 tagagcagat aacaggagat gccgcggata aacacataga caaattggca aaaaagtacc
      541 tcggtaaaga caaatatcct aacagggcac ccggagaaaa aagggtcata ctaaaggtaa
      601 aacctgaaag agtatttcat atgaaataaa gaagtagtag ttgtgtcaat ttcatagaaa
      661 tagcaatctg tgggctagtt tttgacatca atacagttga aagtagatac gttagcacta
      721 tgtaatctaa ttgccactag tttatatatt aaatcaacct atcggatcca ataaatataa
      781 aacacaaaat tgtatgatag aatccccatc catggcttga ggaatcaaat cccaataatg
      841 cggatattga attttgttat tttgaacagc gttgagataa gcataattat attgatatca
      901 tctatcacgt ataccatacc tgtacttgga ttaacatcaa ttatagattt gcaaggaaca
      961 atttgtcgtg tggccctaag cggctcagga taatcactat gttccatcct gatctaccaa
     1021 tatgattttt taaactaggc attttttcat cgaacctatc tagattattt tttagcaaaa
     1081 gtcttgatga ttatgtattc tgcatagcgc ttattgtttc tcacttaaac ttggcaatat
     1141 tcttcgacag gtgtttaact ttcttctagt ttatctagcc tgctgataac gaagcgacac
     1201 aaggccattc ttgaatgatc gcgattcaac aaagttcatc tcagtcatct tgacatcttt
     1261 gaacaagtac ttgccattac ctaaaataat tggaactaca acaagctcat attcatcaat
     1321 aaaacccatg ttggcaagct gttgtataat gctcccgctt cccaatatgg ttatcactcc
     1381 agtaccactt ccttctcctt ctttgtgttt tgtaatagta tcatggttca agtcgcgaat
     1441 tatagttacg ttcttccagt ttccttcgtc ttctttgaca ccatcgagtg tctttgagac
     1501 cacaatcttt ggactttcat tcatgacttt ggccatgtgt ggatcgctct aaatcgcagc
     1561 atcagtaggc caataacttt tcaccatttg taggttgttg catcaaggag aagtgtgcta
     1621 ccggtgtgcg attctctgta agtatgcttt tcccattccg gatccttttt gattactttg
     1681 aaccaatcga gttcatcatt aggtccagca aaaaatccat caaggcttac atggataaat
     1741 acgcttattt ttctcatata tacatcatcc tttcactcac gtaattgtca gtttctcttt
     1801 ggctcatatt gaagctcaac tattccgcaa tcaaatggtg cggactttac caaagtgaat
     1861 tttcggatct cgttcatatc tttgaatatt gccatgccgc ttccaatcgc aacaggattg
     1921 atgaacaaat gaaattcgtc aatcagtcct gccttaatta aggaagaatc aagcatagcg
     1981 cctccataca cgacaatatc tttaccactt tcactcttta gcttcatgat ttagtctgta
     2041 aggtcgcctg ttacaagagt agtatttacc catt
//
LOCUS       DASQSJ010000349         2348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_537122, whole genome shotgun sequence.
ACCESSION   DASQSJ010000349 DASQSJ010000000
VERSION     DASQSJ010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537122"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VE223_06895"
     CDS             <1..254
                     /locus_tag="VE223_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21354.1"
                     /translation="SQLQQDYIRNLERINHLYDESIKSIERVNELYNKFVDSYDKMNR
                     LYNHQFDSMQRMNQKWLDVFSKSWEQQQEEQGQQQNEKH"
     gene            complement(332..544)
                     /locus_tag="VE223_06900"
     CDS             complement(332..544)
                     /locus_tag="VE223_06900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21355.1"
                     /translation="MPVDATIHCYSIQGPEISLLLHGRPGTTDQVELWVCLAKLNNSI
                     QSSQYGIANKIHIIIREAANWDKDFL"
     gene            complement(1050..1592)
                     /locus_tag="VE223_06905"
     CDS             complement(1050..1592)
                     /locus_tag="VE223_06905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21356.1"
                     /translation="MQSDQENRNKEKNEAMDTIVSKKEKKIHQKVQLWSNAYENEYAL
                     RLTIANADDDYDKLEHTFVTRTDPNARYTHIVAESDYLEDFKDGPEYTLRHLIERYKE
                     ALQQQPEEEYLKKNQPLTSATYPSSSNEKIAQEKVEAKIIQRRRDYPIKIISYLKCHY
                     CNLDFHNVKERKEHELEWHI"
     gene            complement(2078..>2348)
                     /locus_tag="VE223_06910"
     CDS             complement(2078..>2348)
                     /locus_tag="VE223_06910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21357.1"
                     /translation="TDPNARYTHIVAESDYLEDFKDGPEYTLRHLIERYREALQQQPE
                     EEYLKKNQPLTSATYPSSSNEKSAQEKVEDKIIQRRRDYPIKTRG"
BASE COUNT          711 a          427 c          411 g          799 t
ORIGIN      
        1 taagtcaact acagcaagat tatattagaa acctagaacg gataaaccac ttgtacgatg
       61 aatctattaa gagtattgag agagtaaatg agctttataa taagttcgtt gatagctatg
      121 ataaaatgaa cagattgtac aaccaccaat ttgacagtat gcaaagaatg aatcagaaat
      181 ggcttgatgt tttttcaaag tcatgggaac aacagcaaga agaacaaggt caacagcaaa
      241 atgaaaagca ctaacaaaaa ctctggttaa atataaggga aatctctagg ccaaatatta
      301 tacatccgat cccatcgcac ttgagcatat cttacaagaa atctttatcc caatttgctg
      361 cttcccttat aataatatgg atcttatttg caataccata ttggctgctc tggatggagt
      421 tattcagctt ggcaaggcat acccacaatt cgacttggtc ggtagtacct ggtctaccat
      481 gtaacagcaa tgatatttca ggcccctgta tactataaca gtggattgtt gcatctactg
      541 gcacgttttg acctattctt gttgcaagtg ttgtccacta atctttccca taaagagatc
      601 aaagctgatg gttacggaag gcaagttttt agagctactt caacacaaat gtgtcgatat
      661 ccactaactg gcactgtaga ttgattggga agtaatcgta caaaaccctc accagatccg
      721 gagtatgtta ttctgtatgg tgtatatgca caaggcttca accagcactc tattcctcat
      781 gtaatatact tgtaaatcct gatggaacat taacaacaga aggccaacat gcattagggt
      841 gtataaggaa tggagcgacg ctggctggtg gtgctgatct acttggagta cctcttatta
      901 ttggcaaggc ccagttaaat gagcgatgag gaggaggata atatatacca cagtctattg
      961 atgaagcact gagagtctga attacaacaa catcaagaaa tcaaataata tcaaatagtc
     1021 gaaaaattat ttgtgagcaa atttcattat caaatatgcc attctaattc gtgttctttt
     1081 ctttctttaa cattatgaaa atctaggtta caataatgac attttaggta tgatattatc
     1141 ttgataggat aatccctcct tctttgaata atcttagctt ccactttttc ttgagcaatc
     1201 ttttcattcg aagatgaggg ataggtggca gatgttaatg gttgattttt cttcaagtat
     1261 tcttcttctg gttgttgctg tagtgcctct ttgtatcgtt cgattagatg ccttagagta
     1321 tattctgggc catctttaaa atcctcaagg tagtcagatt ctgcaacaat atgagtatac
     1381 cttgcattgg gatcagttct cgtaacaaaa gtatgctcca atttatcgta atcatcatca
     1441 gcatttgcta ttgtcaaacg tagagcatat tcattttcat atgcgtttga ccatagctgc
     1501 actttttggt gtatcttctt ctcttttttg ctaacgatag tgtccatagc ttcatttttc
     1561 tctttgttcc tattttcctg atcagactgc attaaaataa acaataatac tattgattgc
     1621 agaatattta acttaacgaa gtcatcattt gacaaatggt aacttttgaa ttcaaaaatg
     1681 tcaaatgtta acatattcaa atgttaacat attttcggca tttgaaagca gtattatgct
     1741 taatttctta aataaactcc tctagctacc tgcatattcg tgtacaatta tatctgaatg
     1801 tctgaactga ctttatacct cgactacttt actaggtttg tcaagatagt ttttgcagca
     1861 atcatctgag caaaataata taattccttt aactgtgctt gaatatctta ctcccccaac
     1921 taggtcatta aattcttttc cgcatgaatt acaaaggacg tacattttat cttatatact
     1981 gcaaggttat cctattataa agtattttaa tgaacaaggc gcttcaggct ctgtcgaaac
     2041 cacctcttct cgataagata aaagctatgt aatggcatta tcctctggtt ttgataggat
     2101 aatctctcct tctttgaata atcttatctt ccactttttc ttgagcactc ttttcattcg
     2161 aagatgaggg ataggtggca gatgttaatg gttgattttt cttcaagtat tcttcttctg
     2221 gttgttgctg tagtgcctct ctgtatcgtt cgattagatg ccttagagta tattctgggc
     2281 catctttaaa atcctcaagg tagtcagatt ctgcaacaat atgagtatac cttgcattgg
     2341 gatcagtt
//
LOCUS       DASQSJ010000350         2789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_298598, whole genome shotgun sequence.
ACCESSION   DASQSJ010000350 DASQSJ010000000
VERSION     DASQSJ010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298598"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(358..618)
                     /locus_tag="VE223_06915"
     CDS             complement(358..618)
                     /locus_tag="VE223_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21358.1"
                     /translation="MTCKGICIRHKAQKPSKSGRYAVGQKRCQICEIFIRWDGFWCPC
                     CGYRLRTRPRNLKYKAKLKARKQIEEAKILIAVRKATTTQKL"
     gene            1274..2581
                     /locus_tag="VE223_06920"
     CDS             1274..2581
                     /locus_tag="VE223_06920"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HZC21359.1"
                     /translation="MVSIRSPPEWGIEPIQSKYRSLKGVSYFILWSSLGVGLLVFSAG
                     SFLTAAKFADAVLAIIIGSVVGSLLLALVGKIGSDRAVPSLISTRPSFGIRGSYIPAI
                     LNIIQLIGWTTFEIMIMSKASEMLVGNRIPYYTWTIIIGAFVILLGIVGPLTVIRQWL
                     EKFAIWIVYVSSTLIIINLLMSGILSRLLLSSSSPAGMSFFSALDIVIAMPISWMPLV
                     SDYNRFAKNSRGAFSGTFVGFAITNILFYFGGLILGVGDVVAVVAAIQSIFFGLILLM
                     FILHETSNAFADVYSAAVSTQTIFHKIKQSHLIIGFTALSTVLAVMIPISQYETFLLL
                     IGAVFVPLFGVVLSDYYIIKHRRYENTLMYGNGPLRIGFPAIIAWLFGLLLYYLLSSL
                     SPIYISQWPQIGATIPSFIGSSLLYIGIMKMNSVVYVIKKLKN"
BASE COUNT          826 a          516 c          506 g          941 t
ORIGIN      
        1 ctaggaacta ttacaatata aacattggta atcaaaggtt gttattacca ttcaaaacct
       61 tattcaagtt gccaccacca ccaaatccat cattttccgg catcccactt aatagtacca
      121 aaaatatgga tctttataat tataagccat tactgtgtat tgctctgcat tattgataac
      181 ttcgttacat ttatggacac aaaatgtctg aacgcgaatg tccgtccaat ctgatattgc
      241 ctccctttct taagattata tcatcaagat atattctctt cttgatatgt ctacaaatac
      301 taaaatagtt aagatatgtt acgcgatcct agagtatcct gggtaccatt actagtgtta
      361 taacttttga gtggtagtag ccttccggac agctattaaa atcttggctt cctctatttg
      421 ctttcttgcc tttaactttg ctttgtattt caggttacgt ggtcttgttc tcagtctata
      481 accacaacag ggacaccaaa atccatccca ccttataaat atctcacata tttgacaccg
      541 tttttgtccg acagcataac gaccagactt agatggtttt tgtgctttat gacgtataca
      601 tataccctta caagtcatta ttctctttct tcctatgata cgggatagtg gatattatac
      661 ttttaacagg aaaagtataa aatcctataa cgcttctttt gtaaattttt gaaattcctt
      721 tttcatcatc tctccctagg agcaatcctt tttaatttta tgataacctc aattagaccc
      781 ataagtgttt gcgagatcaa atgttccatt ctaacaggtc ttttttttac taaaaaagaa
      841 atattatgaa aattatacat gctacgctta acaacgatga aaatgaactt cctggatcag
      901 gattatttga atatagtcca gatctgaata cagagcatct gcgaattatg aatattgaag
      961 acgtcaagaa atagttatga caacaggttt gcatgtaatt gtaatttatc acgcataaaa
     1021 tcaagattac actcattaac agcggtgtca ggtagaagtt cagcagactg taatatatca
     1081 gataggaaat cccggttaag atatatggga ttgctcagtg aggcgggcat tagtaatcta
     1141 gtaggcacgg ggccgtgtag agaaattgga gaaatagaaa tgtttgcaaa caagattatg
     1201 aagaaatctt aattaaggga agttcatatg catcttaaca attcatcttc taagagatag
     1261 gctagaaaaa ataatggttt cgataagaag tccgcctgaa tggggcattg aacccataca
     1321 gtcaaaatac agatcactta aaggagttag ttacttcata ctttggtcta gtctgggagt
     1381 aggcctgctt gtcttctctg caggatcgtt ccttactgct gccaagtttg ctgacgcagt
     1441 acttgcaatt ataattggtt cggtagtggg atctttgctt ctggcccttg tgggaaagat
     1501 tggaagcgat cgcgccgtac catccttgat aagcacgcgg ccgtcattcg gtattcgtgg
     1561 ctcctatatt cctgccatat taaatataat acaactcata gggtggacaa catttgaaat
     1621 catgataatg tcaaaagcct cagagatgtt agtaggaaat cgtatcccat actatacttg
     1681 gacaatcata ataggggcat ttgttatttt gcttggcatc gtcgggccgc ttactgtgat
     1741 aaggcagtgg ctcgaaaaat ttgcaatttg gatagtatat gtgtcttcta cattgataat
     1801 tatcaatctg ctgatgtctg gaatcctttc tagattgcta ttatcctcct cgagtcctgc
     1861 tggaatgtcc ttcttttctg cactagatat tgtaattgca atgcctatat cttggatgcc
     1921 gcttgtatcc gactataata gatttgcaaa gaatagtaga ggtgcctttt caggtacatt
     1981 tgtaggtttt gccataacaa acatcctgtt ttactttggc gggttaatac ttggtgtggg
     2041 cgatgttgtt gcagtggtcg ctgcaatcca atcaatattc tttggattaa ttttgttaat
     2101 gttcatttta catgagacaa gtaatgcatt tgcagatgta tattctgccg cagtttccac
     2161 ccagactata tttcacaaaa ttaaacaaag ccatttgata attggcttta cagcgcttag
     2221 taccgttctc gcggtcatga tcccaatttc acagtatgaa acatttcttc ttttgattgg
     2281 agcagtattt gttcctttat tcggagtcgt cctatccgac tattacatta tcaaacatcg
     2341 ccgatatgaa aacaccttga tgtacggaaa tggcccctta aggattggtt ttcctgccat
     2401 tattgcatgg ttgtttggtc tgctgctata ttatctatta tcttcgctat ctccaattta
     2461 tatttctcaa tggccccaga taggcgcaac tattccaagc tttattggat cttcacttct
     2521 ttatattggt ataatgaaaa tgaactcagt ggtttatgtg attaaaaaat taaaaaatta
     2581 aaagataaga taattaaaac gtagatgctt gttggattta gcggatgcaa aaaaagcggt
     2641 tctttgaaaa atttcaaaaa acacaaggga ctcgggatga agcaattcca taagacaata
     2701 aagaattcta tcgaggttct ttactctttt gtttcgtttc cttgaatcat ggcaaggaaa
     2761 ctcctgtaac ctttaattga ttgattaca
//
LOCUS       DASQSJ010000351         2208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_298619, whole genome shotgun sequence.
ACCESSION   DASQSJ010000351 DASQSJ010000000
VERSION     DASQSJ010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298619"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..700
                     /locus_tag="VE223_06925"
     CDS             <1..700
                     /locus_tag="VE223_06925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HZC21360.1"
                     /translation="HLRKLMYNHRVEDVELLAPISNPPKIICLAFNYYDHARDAGLTP
                     SDEPVIFMKPRTTLNSPFSDIICPSFVKRLDYEAEIAVIIGEDTKKVSENQALETVFG
                     YMILHDVSSRDIQFKDKQYTRAKSIDTFAPCGPWITTKDEVGDPQNLKIITKVNGETR
                     QNSSSVNMVLSINRIISSLSMVMTIEAGDIISTGTPAGVAMSMKEPKYLKDGDIVEIA
                     IEKLGMIRNRVVFQ"
     gene            complement(1045..1344)
                     /locus_tag="VE223_06930"
     CDS             complement(1045..1344)
                     /locus_tag="VE223_06930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21361.1"
                     /translation="MLEWFKTKGFSYSVDEIDQLTQTINEQGSEQRKAMSVFSRAMNN
                     FATDRSLETCLEALNASMQIANIRSKLVESYEYYARLLERELTRLNRLENKDKQP"
     gene            1446..>2208
                     /locus_tag="VE223_06935"
     CDS             1446..>2208
                     /locus_tag="VE223_06935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HZC21362.1"
                     /translation="MVVDNKGTISYIRVLKEDLAIIRVTPNDGPVPDFKAGQFVTLGL
                     HIPTEGKIVRRAYSIASQPEQKKYFELVIRWVRKPVPGRLTTELFSKKEGDEIIWVKP
                     TGIFTINEKLHNGAPDDRRMVLIGGGTGLAPFISYSLHLKAIGSKREIVVLHGASYVD
                     ELSYRELLTELEEESIDNGKDKWNFRYRASISRPQEWFNRSWGGQKGRVETFLRPKAG
                     TDRSPLEELVGEKITTANTSFYVCGWQGTVDGSLDY"
BASE COUNT          719 a          402 c          425 g          662 t
ORIGIN      
        1 acatctaagg aaattaatgt ataatcatag agttgaagat gttgaacttt tggctcctat
       61 ttcaaatcca cccaagataa tttgcttagc gttcaattat tatgatcacg caagagatgc
      121 tgggttaaca ccttcagatg agcctgtaat attcatgaaa ccaagaacta cactcaattc
      181 tcctttcagt gacataatct gcccttcatt tgtaaaacgc ttagattatg aagcagagat
      241 tgcagtaata attggagaag atacaaaaaa agtatccgaa aatcaggccc tagagactgt
      301 ttttggatac atgattttgc atgatgtatc ctccagggat atccaattca aagacaaaca
      361 atacacccgt gcaaagagta tcgatacttt tgctccgtgt ggtccttgga ttacaactaa
      421 agacgaggta ggggatcccc aaaatctaaa aattattact aaagtaaatg gagagacacg
      481 tcagaattcg tctagtgtaa acatggtatt atccataaat aggataattt caagtttgag
      541 tatggtaatg accatagagg ccggcgatat catttctaca ggcactcccg caggtgtagc
      601 aatgtcaatg aaagaaccca agtatttgaa agacggcgac atagtcgaaa tcgctattga
      661 gaagcttggc atgatcagga accgtgtcgt gtttcaataa tagttaggtt actggcgtta
      721 ttagagagcc ggaaaatttg catcctcgac catactctct agacagatcc cgtacttcaa
      781 gctataatga gttcttgatt ttaatatttc tgggaatggc aacatactta tcatttttcc
      841 aaaacattat atttcaacca ctcctgaatc tgagattcaa tagatttgta gcaatagagc
      901 agattgctat tgctttagtt aatgtccaag tgatgataat gattcctttt tagatcgaat
      961 atacctgctt taacaagcaa ttcttaagct gttgccaagc attattaggc tagtttaagt
     1021 ttggcaacca atccatgctt tatatcatgg ttgtttatct ttgttttcaa gtctgtttaa
     1081 cctagtaagt tccctttcta ataatcttgc ataatattca tatgattcaa ctaatttact
     1141 tctgatattg gcaatctgca tggatgcatt tagagcctca agacatgttt cgagagacct
     1201 atcagtcgca aagttattca ttgctctaga aaaaacactc attgcctttc gctgttcaga
     1261 accttgttcg tttattgtct gtgtaagttg atctatttca tcaacactat aagaaaaacc
     1321 cttcgtcttg aaccactcca acattctcta taaacacttt atccaaataa gatttacttg
     1381 ttaatatatt aacatacata aagtaacaat atatttattt agcataaatt gaatgtgaga
     1441 attgaatggt agtagataat aagggaacga tttcatatat tcgggtactc aaagaagacc
     1501 tcgccatcat ccgtgtaaca cctaatgacg gtcctgttcc cgacttcaaa gcaggtcagt
     1561 ttgttacttt aggccttcat atacctactg aaggaaaaat tgtccgtaga gcttattcta
     1621 ttgcttccca accagagcaa aaaaaatact ttgaattagt tataagatgg gtaagaaaac
     1681 cagttcctgg acgtttaacc acagaattat ttagtaaaaa ggaaggagat gagatcatat
     1741 gggtcaaacc tacaggaatc tttactatca acgaaaagtt gcataatggt gctcctgatg
     1801 atagaaggat ggttctcata ggaggcggca ctggtctagc tcccttcata tcatactctc
     1861 tgcatttgaa agcaattgga agcaagcgtg agatagttgt actacatgga gcaagttacg
     1921 tcgacgaatt aagctaccgt gaattattaa ctgaattaga agaagaaagc atcgataatg
     1981 gcaaggataa atggaacttc aggtataggg caagtattag taggcctcag gaatggttca
     2041 atagatcgtg gggtggtcaa aaaggcagag tagaaacatt cttgagacca aaagcaggaa
     2101 ctgatcggtc acccctcgag gaattagtcg gtgaaaagat aaccacagca aatacttcct
     2161 tttatgtgtg tggatggcag ggaaccgtcg atggctcact tgattacc
//
LOCUS       DASQSJ010000352         2783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_298716, whole genome shotgun sequence.
ACCESSION   DASQSJ010000352 DASQSJ010000000
VERSION     DASQSJ010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298716"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            506..1990
                     /locus_tag="VE223_06940"
     CDS             506..1990
                     /locus_tag="VE223_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH116 family glycosyl hydrolase"
                     /protein_id="HZC21363.1"
                     /translation="MRDSGSSSAATNSSTSSASGWNSFADNANRFLQKTQEHVLQGIN
                     PGGIYQAIWCRDAAYILRDWFLSANIDGTMQQIYQIWSHQISPASLEKLVYGRGSPEM
                     KFLSEVAKEDKQKEFQGALPTTIYQAGFSEVYGQNPDIDSTALMVSTSSWILARSLRD
                     RQSLSETLSTSGGVVTASEHSSDYVSALLSKVGITDPIKVAEFVLPRMLKAVEYLSKR
                     DIDNDGLLEQNHNEDWMDTVIRAGKIVYSQACWILALSNLSSLLSKLGRDDESDKMTR
                     LADKAVKAVDRNLWSEEDGCYLDIQETHHIGGPYRTLTQDVSLYVVAITENTMNDSLR
                     VTRNTSNNREGEEDGAKILDQNIHNRSSRTLDAIRARAWKDKWPLVTEVELKATGPWI
                     LKPYEYHNQTFWPWTTGIEMLARSRFDRVEECNILFSKLASEGHPHIHAFYEWINPIT
                     DQPDGSFPFRTGISGIRTAIADIVEKIKKISSSSSPGSSSILYP"
     gene            complement(2188..>2783)
                     /locus_tag="VE223_06945"
     CDS             complement(2188..>2783)
                     /locus_tag="VE223_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21364.1"
                     /translation="NLQVEVGQSKQCLLNHGIKTSIFAVPKNIATDNATVINTIAKYY
                     DLAINGHSNLMFLHCNEPKNDTSSASSSQTNCRTYLNNGTLTLANRYSIGEWSMQHIE
                     DGNSYNNSQMFEKFVSELNSQNKFNRGGMIKAIPVIGYHNINATISDVSYTTESSATA
                     LNLFEAEMKYLHDNGFRVITFADLGYDKNSNSFYIQI"
BASE COUNT          945 a          483 c          511 g          844 t
ORIGIN      
        1 tgtaatatat ctttctatct tgttgaaatc ctgttctttc aatctcttct ccattagctc
       61 gataagccac actctgataa gagccatttg accagttttt gaatacttta ccaaggtcta
      121 aattaaatcc atttcctcct ctaagtaata gtaatacgct tctcctatgg cctgtgacat
      181 accaaattct atcctgttgt aaactagctt tacaaaatgt cctgtgcctg gctgaccagt
      241 ttgaatataa cctatggaat atctcctttc tgcatatgct ctactagtat atgcttctgc
      301 atatcaccaa agttatcaaa tttcattcca catgatctgc atgtataata ttgagaaata
      361 ccctcagtcg aatgctgtga tacattgttc aattgatctt tatcatctcg tttatactca
      421 tacaacacta tactacaata tagttgataa ggttttgtaa tattaaataa gtcttataaa
      481 aaagaaatta caataaaaat aagagatgcg agacagcggc agcagctctg cagcaacaaa
      541 tagtagtact agtagtgcta gcggatggaa ttccttcgca gataatgcaa acagattctt
      601 gcaaaaaaca caagaacatg tacttcaagg tataaatcca ggtgggattt atcaggccat
      661 atggtgcaga gatgctgcat acattctcag agactggttt ttatctgcca atatcgatgg
      721 aacaatgcag cagatttatc aaatatggtc gcaccaaata tcgccagcta gtcttgaaaa
      781 gctggtttat ggcagggggt caccagaaat gaagttttta tcagaggttg caaaagaaga
      841 taaacaaaaa gagtttcagg gagctcttcc tacaacaata tatcaagcag gtttctctga
      901 agtatatggg cagaatccag atattgattc tacagctctg atggtttcca catcttcttg
      961 gattttagct aggtctttaa gagacaggca gtctttatct gaaactttat ctacatcagg
     1021 tggtgtagtt acagcttctg aacattcgtc agattatgtt tctgcgctat tatcaaaagt
     1081 tgggataaca gatccgataa aagtagctga atttgtatta cctcgtatgc taaaggcagt
     1141 tgaatatcta tctaaaagag acatagataa tgatggtttg ttagagcaaa atcataacga
     1201 ggattggatg gacacagtaa ttagagccgg taaaatagtt tacagccaag cctgttggat
     1261 tcttgcatta agcaacctat cctctttatt atcaaagctt ggaagagatg atgaatctga
     1321 caagatgaca agattagcag ataaagcagt aaaagcagtg gatcggaact tgtggtcaga
     1381 agaagatggc tgttatttgg atatacagga gacacaccat attggaggtc cttataggac
     1441 acttacacaa gatgtttctc tatatgtagt agcaattaca gagaatacaa tgaatgatag
     1501 cctcagagtt acaagaaata caagcaataa cagagaggga gaagaagatg gagcaaaaat
     1561 tctagatcaa aacattcaca atagatcaag tcgcactctt gatgcgatca gagcaagagc
     1621 atggaaagac aaatggcccc tggtgactga ggttgaactg aaagctacag ggccgtggat
     1681 tctcaaacca tatgaatatc acaatcaaac tttttggcct tggaccacag gaatagaaat
     1741 gttggccaga agcaggtttg atagagttga agaatgcaac atcttatttt ccaagcttgc
     1801 ttcagaaggc catccacaca tacatgcatt ttatgaatgg ataaacccca ttactgacca
     1861 gccagatggt tcatttccat ttagaacagg aatttcaggt ataagaacag ctattgcaga
     1921 tatcgttgaa aaaattaaaa aaatatcatc ttcttcttct cctggttctt cttctatatt
     1981 atacccataa gaatagcaac gagtcaatac catacgaaca gcatgtctga attcattggt
     2041 accgaacgtg gtaacactta aaactgaaaa taagaaatac aacagaaatc taaactggta
     2101 tattgcaatc tgaaagagag aatttcagat ggaggatatg taatgcaagt atcaaagaca
     2161 acaaaggtct aagacttaaa tgtactatta tatttgaatg taaaaagaat tgctattttt
     2221 atcatatcca agatcagcga aggttattac tctaaaacca ttatcatgta aatacttcat
     2281 ttccgcttca aacaaattta aagcagttgc agaagattca gtagtatagc ttacatcaga
     2341 gatagtagca ttaatgttat gatatcctat aacagggatt gcctttatca ttccacctct
     2401 attgaattta ttttggctat taagctctga aacgaatttc tcaaacattt gagaattgtt
     2461 atatgaattt ccatcttcaa tatgctgcat actccattct ccaatagaat acctgtttgc
     2521 taaagttaag gtaccgttat taaggtatgt tcgacaattt gtttgggaag aagaagcgga
     2581 agaagtatca ttctttggct cgttgcaatg aagaaacatt agattagagt ggccatttat
     2641 ggctagatca tagtatttgg ctattgtatt tatcacagtt gcattatcag ttgcaatatt
     2701 tttaggaaca gcaaaaatag atgttttaat cccatgattt aaaagacatt gttttgattg
     2761 acctacttca acttgtaaat tat
//
LOCUS       DASQSJ010000353         3025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_418935, whole genome shotgun sequence.
ACCESSION   DASQSJ010000353 DASQSJ010000000
VERSION     DASQSJ010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_418935"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1033
                     /locus_tag="VE223_06950"
     CDS             <1..1033
                     /locus_tag="VE223_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC21365.1"
                     /translation="LLRLFRMIITLSAVLLITIALLGATMDDILKRNVMLGVIEQVSQ
                     NAKLNSSFKNQQQQQNYVKDQINARIHAQGLDEPWYSPKSLGLKLFKTMTLDLGNALF
                     LTSDSGSGKVSNIILEKLPNTVLLFTTSTIIVIIIGLYLGSFSASRIGSLLDKFTSAS
                     AIFSISVPTFFIGMLMIVVFAFILHLFPSRSIPLTNPSDPYYILDLLYHMILPLFTLV
                     LVGFGSWAYTVRYYVINIFNEDFIAAKRAQGISESRITFSHALKNAAPPTFLSVALAL
                     SGSITGSLLVEIVFNWPGMGLLAFRAISVMDIPVIIGLTYVTTLIFVITMLIVDLMSQ
                     YFDPRVKVG"
     gene            1030..2418
                     /locus_tag="VE223_06955"
     CDS             1030..2418
                     /locus_tag="VE223_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC21366.1"
                     /translation="MSTKLRLATDLISRFIALKSGLAGIAILFLLIAVSTYAITAVPL
                     DSFRQWNNPNYWIRYPKSAMPAWTNIFSSKKQPEHLILDHAVVTNGFDQGVKNITYTY
                     TFAYNYDFFPNDFMLSYALEYNSTPPIFDVQVTRPDGESFDLISSSLPSPEGTHYVFK
                     DTLFSTESQIHESLRNYVDKYSYNVDPTRPEVMLFSKKDNPTVLKGVYTFRIIFSFFD
                     ENNDDKILNSEFILGGRVFGLLGTDELRHDLSIGILWGTPVALFIGLFVAIASTFIGL
                     FYGLSAAYKGKKTEPTLMIIVQIVINIPVLFILIILAITIGRSIFLIVGFFTLFGWVG
                     MALISRTMGLQIKSYAYVEAAKLLGESDIKIIFRHIVPQLLPFTFASIALSVPSAILG
                     ESGLSFIGLGDPTIPTWGQILHDAQSADAAARGMWWWVMPPGVMIGITTVAFVLISRA
                     LEAIVNPKTKRI"
     gene            complement(2431..2757)
                     /locus_tag="VE223_06960"
     CDS             complement(2431..2757)
                     /locus_tag="VE223_06960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21367.1"
                     /translation="MTFEELRSKAFFQNTIDIWIAFCEEKGLDWYDLNGYRSFIRHLN
                     NNGAKMQKFPLCIKESGGLYERGRDKTKFLEELSKLSSDDACAYTIKLSDPVLEKIRL
                     FSAGSI"
     gene            complement(2795..>3025)
                     /locus_tag="VE223_06965"
     CDS             complement(2795..>3025)
                     /locus_tag="VE223_06965"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HZC21368.1"
                     /translation="TYDLPFDLSYIGTAHSHPGASNRPSLEDLNNYYGLVSIIISHPY
                     TDDTIGAFDRNGNEMQLEILSTTSSRSQENKT"
BASE COUNT          899 a          582 c          569 g          975 t
ORIGIN      
        1 gcttcttcga ctctttagga tgattattac tttaagtgct gttcttctaa taaccatcgc
       61 cttactagga gctactatgg atgatattct taaacgtaat gtcatgctag gcgttataga
      121 acaagttagc caaaatgcaa aattaaacag cagttttaaa aatcagcaac aacaacaaaa
      181 ctatgtcaag gaccagataa atgcaagaat tcatgcacag ggacttgatg agccgtggta
      241 ctcgccgaaa tccctaggcc taaagttatt caaaacaatg acattggatc ttggcaatgc
      301 actcttctta actagtgatt ctggctcagg aaaggtgagt aatataatat tggaaaaatt
      361 acctaataca gtattattat ttacgacgtc tacaattata gttataatta taggtctgta
      421 ccttggatca ttttcggcaa gcaggattgg atcattgtta gataaattta cttccgcctc
      481 agccatattc agtataagtg tgccaacttt ttttatagga atgttaatga ttgtcgtctt
      541 tgcatttatt cttcacttgt ttccatcacg atcgatacct ttaacaaatc ctagcgatcc
      601 ttattatatc cttgatctac tatatcatat gatattacca ctattcacat tagttctcgt
      661 tggctttgga agctgggcat atactgtccg ttactatgtt atcaatatat tcaatgaaga
      721 tttcatcgcc gccaagaggg ctcaaggaat ctctgaaagc aggataactt tttcacacgc
      781 attaaaaaac gcggccccgc cgacctttct atcagttgca ttggccctat caggttcaat
      841 tacaggatca ctgcttgtag agatagtttt taattggccg ggaatgggtc tgcttgcctt
      901 ccgtgccatt agtgtaatgg atatacctgt aataataggt ctaacatatg ttacaacact
      961 tatctttgtt atcactatgc tgattgtaga tttgatgtct caatacttcg atcccagagt
     1021 caaggtagga tgagtaccaa attaagatta gcaactgatt taattagtag atttatagca
     1081 ttaaaaagtg gcttagcagg tattgcgata cttttcttac tgatagccgt atcaacatat
     1141 gccattacag cagtaccatt agactcattt agacaatgga ataatccaaa ctattggata
     1201 agatatccta aatctgccat gccagcatgg acaaatattt tttcttcgaa aaagcagccg
     1261 gaacatttga ttctggacca cgccgtagtg acaaatggat tcgatcaagg tgtaaaaaac
     1321 ataacatata cctatacgtt tgcttataat tacgacttct ttcccaacga cttcatgtta
     1381 agctacgcat tggaatataa ctccacgcct cctatattcg atgttcaggt aacaaggcct
     1441 gacggtgaat cctttgacct gatttcatct tctttaccat ctcctgaggg tactcattat
     1501 gttttcaaag acaccctttt ttcaacagaa agtcagatac acgagagtct tcgaaattac
     1561 gttgacaagt actcttacaa tgtagacccg acaagaccag aagtaatgct attctctaaa
     1621 aaggacaacc caacagtact gaaaggagta tataccttta ggataatctt ctcttttttt
     1681 gatgaaaaca atgatgataa aatcctgaac tctgaattca tactgggtgg cagagttttt
     1741 ggtttattag gtacagacga actgcgtcat gacttgtcaa taggaattct gtggggaact
     1801 ccagtcgctt tattcattgg tctctttgtt gcaattgcat ctacattcat aggattattt
     1861 tatggcctaa gtgctgccta caaaggcaaa aaaacggaac caacgctaat gatcatagtc
     1921 caaattgtaa tcaacattcc agttctcttc atattaatta ttctcgccat aacaatagga
     1981 aggagcatct ttctgatagt gggatttttt actttgttcg gatgggtggg catggcgttg
     2041 atcagccgta ccatggggct acaaataaag tcttatgcgt atgtcgaagc ggcaaagttg
     2101 ttgggggaat cagacataaa aattatcttc agacatatag taccgcagct gctccctttt
     2161 acattcgcta gtatagcatt atctgtccct tctgctattt taggggagtc cgggctaagc
     2221 tttattggac ttggtgatcc aacaattccc acatggggcc agatacttca cgacgcgcag
     2281 tcagcagatg ctgccgctag aggaatgtgg tggtgggtaa tgcctcctgg tgtaatgata
     2341 ggaattacga ccgttgcctt cgttttaatt tctcgagctt tagaagctat agtaaatcca
     2401 aaaacgaaaa ggatctaagt ctcgcattta ttatatgcta cctgcgctaa ataatcttat
     2461 tttttcaagt acaggatcag aaagctttat ggtatatgca catgcatcat cagatgaaag
     2521 ttttgatagt tcttccagaa acttggtttt atctcttcct ctctcgtata gacctccgga
     2581 ttcctttatg caaaggggaa atttttgcat cttggcgccg ttattattta aatgtctaat
     2641 aaatgatcta taaccattga gatcgtacca atctaggccc ttctcttcac agaatgcaat
     2701 ccagatgtcg attgtgtttt ggaagaaggc tttgctacgt agttcttcaa atgtcaatat
     2761 cgttattcaa aaaccgttag atgatgttcg tttattaagt tttattttct tgactcctgg
     2821 aactagttgt ggacaaaatt tctagctgca tttcgttacc atttctatca aatgcaccta
     2881 tagtatcatc ggtgtaagga tggctaataa ttattgaaac taatccgtaa taattattta
     2941 aatcttcgag agagggtcta ttcgaagcgc ctgggtgtga gtgagcggta ccaatatatg
     3001 aaagatcaaa aggtaaatca taagt
//
LOCUS       DASQSJ010000354         3249 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_579126, whole genome shotgun sequence.
ACCESSION   DASQSJ010000354 DASQSJ010000000
VERSION     DASQSJ010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579126"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..280)
                     /locus_tag="VE223_06970"
     CDS             complement(5..280)
                     /locus_tag="VE223_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HZC21369.1"
                     /translation="MFNFLIALVGILATIFAVSSTVPQIIKGIKTKKMDDVSVWLIMA
                     LITGLSLWVVYGIAKNDTVIAGGNSVGVSLNGILLLLKIRYSRNPIS"
     gene            412..1419
                     /gene="egtD"
                     /locus_tag="VE223_06975"
     CDS             412..1419
                     /gene="egtD"
                     /locus_tag="VE223_06975"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF021530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HZC21370.1"
                     /translation="MDTRERGIYNVSRAELPIINEFASDVKEGLSCSRKNLQSKYFYD
                     NVGSYLFEQICLQPEYYITRTEADILREKSSDIAKICPSDISIVELGSGNSCKTRILF
                     EEILRKQDLLYYFPIDVSHSILTESVQKLSSDFPRLHPIGISSDYVNGIHKATEIIST
                     QYHVPRRKLILFLGSSIGNLEPRKVVSFLNMIRDRIEKEDILLVGFDLQKEHQILNAA
                     YNDKAGMTEKCNLNLLTRINRELGANFDIKKFSHHAFYNEEMGRVEMHLVSKADQQIY
                     IKEIEKSFEFKEGESIHTENSYKYSLGQIQTLAEKSGFELNVNFLDKRNWFDLALLSP
                     F"
     gene            complement(1462..2886)
                     /gene="egtB"
                     /locus_tag="VE223_06980"
     CDS             complement(1462..2886)
                     /gene="egtB"
                     /locus_tag="VE223_06980"
                     /inference="COORDINATES: protein motif:HMM:TIGR03440.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HZC21371.1"
                     /translation="MAQILSGGIGDLLAEFIEVRRRTLSLFKPLRIEDAVIQPNVFGS
                     PPNWHLAHVTWFYQKILQKHGQEIHSDENVNLEYLNSYYQQFGKILPKSERGKFPRPT
                     VEETLKYRSFIEEKVISFLNRAEDSSTEISHELKYDIMLANQHEMQHQELMIYDFQYY
                     FQRFPDPEDNYKPTTTINTTNTTPTAAAAASATVYKKPTRDCPQVGAVTQKPRGMVEI
                     PGGLYELGFSGGNDHFCYDNERPEHKVYLQPFKIDVAPVTNAEYIKFIEDDGYDDFSY
                     WLADGWDLVKEEKWKAPLYWERKGDTWMKKDFRGLRKIEQDEPVTNLSYYEADAYANW
                     AGKRLPTEAEWEKAASWNEDLQKKTLYPWGDDEFTLKHANLLESSLWGPSRIGSYSAG
                     KSYYGCHHMIGDVWEWTSSEYTLYPGFKSKLSEYTDKWAINQKVLRGGSFSTPCKQIR
                     NTYRNYFKPHERILFSGFRCVSES"
BASE COUNT         1015 a          623 c          605 g         1006 t
ORIGIN      
        1 catatcagct tatgggattc cgagagtatc ttatctttaa tagcagtaat atcccattta
       61 acgagacccc aactgaattt ccaccagcaa ttactgtatc atttttggct attccgtaga
      121 cgacccataa tgaaagcccc gtaattaaag ccatgatcaa ccaaactgaa acatcatcca
      181 tctttttcgt ctttatcccc ttgattattt gtggaactgt acttgaaact gcaaatattg
      241 tagccaagat accaacaagc gctattaaaa aattaaacat agatttactt tatgcaaaaa
      301 tatattttgt ctattataaa taatgtgtat tcataaaaaa ggatctaata gaaaatttgc
      361 atcaagtaaa gtcttataaa tggattatgt attttaagtc aaacacgcct aatggatact
      421 agggaacgtg gaatatacaa cgttagtagg gctgagctac ctattattaa tgaatttgcc
      481 tctgatgtca aagagggtct aagctgttca agaaaaaacc ttcaatcaaa atatttttac
      541 gataatgtcg gctcatatct cttcgagcaa atatgtcttc aaccggaata ttacataacg
      601 cgcacagagg cagatatact aagggaaaaa tcatctgata ttgctaaaat ttgtcctagt
      661 gatattagca tagttgagct aggaagtgga aactcctgca agactagaat cctatttgaa
      721 gagattctca ggaagcagga tcttttatac tattttccga tagatgtatc ccacagtatc
      781 ttaacagagt cagtgcaaaa gctatcgtca gattttccaa gacttcatcc aataggaatt
      841 tcttcagatt atgtcaatgg tatacacaaa gctacagaga tcataagcac tcagtatcat
      901 gtcccacgca gaaagttgat acttttttta ggctcaagca taggaaattt agaacctcgc
      961 aaagtagtat catttcttaa catgataaga gataggatcg aaaaggagga tattttgctg
     1021 gtaggctttg atctgcagaa agaacatcag atcctaaatg ccgcttacaa cgataaggcc
     1081 ggcatgacag aaaagtgcaa cctaaacctg ttaacgagaa ttaacagaga attaggtgct
     1141 aactttgata tcaaaaaatt ctcccatcat gctttttaca atgaagagat gggacgggtc
     1201 gagatgcatt tagtttcaaa ggcagatcag caaatttata tcaaagaaat tgaaaaatca
     1261 tttgaattta aagaaggaga atccattcat acagaaaatt catacaagta ttcgcttgga
     1321 cagatacaaa cactagcaga gaagagtggg tttgagttaa atgtgaattt cttagataag
     1381 agaaactggt ttgatttggc gcttttgtct ccattttagt tcagaaaata agtaaacaaa
     1441 caaaccaaca agaaaattgc tttaggattc gcttacgcag cgaaatcctg agaagagtat
     1501 tctttcatga ggtttgaagt agtttctgta agtgttcctt atctgcttgc atggagtgga
     1561 aaaactacct cctctgagta ccttttggtt tatagcccat ttatctgtat attcggagag
     1621 ctttgatttg aaacctgggt acagagtgta ttctgatgat gtccattccc acacatcacc
     1681 tatcatgtgg tggcagccat aataactctt gccagcagag tacgaaccta tcctcgatgg
     1741 accccacaac gacgattcta ataggtttgc gtgcttgaga gtgaactcat catcacccca
     1801 tggatataga gtcttcttct gtagatcttc gttccaactt gcagcctttt cccattctgc
     1861 ttctgtagga agtcttttac cggcccaatt tgcataggca tcagcttcat aataacttag
     1921 attggttacc ggctcatcct gctcgatttt tctcaagcca cgaaagtctt ttttcatcca
     1981 tgtatctccc ttacgctccc aataaagagg agctttccat ttttcctctt ttactaggtc
     2041 ccagccatcc gccagccaat agctgaaatc gtcatatccg tcatcttcga tgaactttat
     2101 gtattcagca ttggttactg gtgcaacatc tattttgaaa ggctgtaggt aaactttgtg
     2161 ctctggacgt tcattgtcat aacaaaaatg atcattacca ccgctaaacc ctagctcata
     2221 cagtccccca ggaatttcca ccatccctct tggtttttgt gttactgctc ccacttgagg
     2281 acaatcacgt gttggctttt tgtatacagt ggcactggca gcagcagcgg cggtaggagt
     2341 agtattagta gtattgatcg tagtagtagg cttataatta tcttcgggat ctggaaaacg
     2401 ctgaaaataa tactgaaagt cgtagatcat gagttcttgg tgttgcatct catgctggtt
     2461 cgccagcata atatcatact tcaattcatg tgatatttcg gtggaagaat cctccgctct
     2521 gttcaaaaat gagataactt tctcttcaat aaatgatcta tatttgagag tttcttctac
     2581 agttggccgg ggaaatttgc ctctttcgga ctttggaagt attttcccaa actgctggta
     2641 gtaagagttg agatattcca agttcacatt ctcgtcggaa tgaatttctt gtccatgctt
     2701 ttgcagaatc ttttggtaga accaggtcac gtgcgcaagg tgccagttag gcggactacc
     2761 gaaaacattt ggttgaataa ctgcatcctc aattctaagt ggtttgaaaa ggctgagtgt
     2821 tcttcttctc acttctatga actcagcaag taaatcccca attccaccgc tcagtatttg
     2881 agccatattt tagaaatagg actttatgaa acttataaac caatagatta gttcaaagat
     2941 actatactat acgatatgat aagatgtctg gagttgagtt catcagaaaa attgcaatca
     3001 tagctattcc ctagtatata atatttaagg aaatgctttt gcactagggc atcataataa
     3061 taacaatata ataacaacaa taatgaactc cttttaaaat tggcaatcaa ataataattt
     3121 gaatgggaag ctaaactagc atgcataaag acatggtcat gtctcctttg tgagagaagg
     3181 tttatcttgt agaattccgg actgcactat tgattgagtg gcagctagca agtttttgat
     3241 atcacgatc
//
LOCUS       DASQSJ010000355         3846 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_579259, whole genome shotgun sequence.
ACCESSION   DASQSJ010000355 DASQSJ010000000
VERSION     DASQSJ010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579259"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..390)
                     /gene="tfb"
                     /locus_tag="VE223_06985"
     CDS             complement(<1..390)
                     /gene="tfb"
                     /locus_tag="VE223_06985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HZC21372.1"
                     /translation="MEPPLPQQPSSTSPLCEDHLLIITDAESGETICSKCGMIVLDKI
                     QNINQPEWRAFSNEEHENRSRTGIPLSLAIHDMGLATLIGRTDRDASGKKIDAEMHTM
                     MQRLRIWDSRAYIHDSSDKSLISAFSKL"
     gene            complement(471..755)
                     /locus_tag="VE223_06990"
     CDS             complement(471..755)
                     /locus_tag="VE223_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21373.1"
                     /translation="MEKIIIKFVTGLSANSSAWEKRQHKYYGGITNVCKQIGYDIKHG
                     ATIEQVLLLLQKIRNDSYFSNLQKDDECMQRLNELDKHFLPLKEQSAYYY"
     gene            complement(1565..3757)
                     /locus_tag="VE223_06995"
     CDS             complement(1565..3757)
                     /locus_tag="VE223_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HZC21374.1"
                     /translation="MTYTLKILESYTRDVGRGVARIDYDSMDSLSASTGDVIEIKGKD
                     RRTVAKCLPLYPSDEGKGIIRVDGLVRNNAGVAIGDTVVVRKIKAVPAEKVIVAPLEA
                     IPPIDERYLADALESVPLIKGDNVMVPYFGGRLTFQVIGVTPAADAVLVTQKTIFHIA
                     EKGETLRGVPQVTYEDIGGLKEEIQKVREMIELPLRHPEIFEKLGIEAPKGVLLYGPP
                     GTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAKEKAPSIIFIDE
                     IDSIAPKREEVTGEVERRVVSQLLSLMDGLEARGKVIVIAATNRPNAIDPALRRPGRF
                     DREIEIKVPDKRGRLEILQIHTRNMPLDTDVDQDRVAAVTHGFVGADLEYLCKEAAMK
                     CLRRLLPELNLEDEKLAPEVLNKLMIIGADFENAIRDVMPSAMREVYLESPDVPWTAI
                     GGLEEVKRELQEAVEWPLRYPDLYKKLGHSIPKGLLMHGPSGTGKTLLAKAVATESEA
                     NFIAVKGPELMSKWVGESEKGIREIFRRAKQAAPCVVFFDEIDSIAPTRGGTGGMEGG
                     GGGEGIGGINTRIMSQLLTELDGIEQLHGVVVLAATNRVDVIDPALLRPGRFDKILFV
                     PKPDKTTRQKILEIYTKGKPMNPDVDLKKIAEITDGFSGADVSAIANTAISLVLHEYL
                     RRYSTPEEAAKHASEASISMKHFDQAVSKIKTQREMKSREGIALSQYM"
BASE COUNT         1092 a          801 c          628 g         1325 t
ORIGIN      
        1 gagtttactg aaagcactaa tgaggctttt atcagaagaa tcatgaatat atgctcttga
       61 atcccatatc cttaatcttt gcatcatagt atgcatttct gcatctatct tctttccgct
      121 tgcatctcta tcggttcttc cgattaaagt ggctagtccc atgtcatgga tagcaagaga
      181 taatggaatt cctgtacgac tcctattttc atgttcctca ttagagaatg cgcgccattc
      241 aggttggtta atattctgaa tcttgtctaa aactatcatt ccacatttac tgcaaatggt
      301 ctctcctgat tctgcatctg ttattatcag cagatggtct tcacacaaag gagaggtact
      361 agaaggttgt tgtggtaatg gtggctccat tattaaagac tactttttaa ttgttttacg
      421 cacttcgaaa taataataat atgtataata acgataaata agtgctatag ctaatagtag
      481 tatgctgatt gttcctttaa tggcagaaag tgtttatcta gttcgtttaa tctttgcata
      541 cactcatcgt ccttttgaag attagaaaaa taggaatcat ttctaatttt ttgcaaaagc
      601 aaaaggactt gttcgattgt agctccatgc tttatgtcat aacctatttg tttgcagaca
      661 tttgttattc cgccatagta tttatgctgt cttttctccc aggcactaga atttgcagat
      721 aaacctgtta caaatttgat tattatcttt tccatatgct taacatgcca ttgtctcata
      781 ggaaagctgt tttggaccaa aaaaatcatc taaagtacat gtattgagct aacataaatg
      841 tatctgtcgc aagaataagc ccgacaccgt cctaggtacc atgagaagac gtaaccacca
      901 atgtaggtct tttagttttt aattccatag taatagacga aaatcgcaag ctataaacaa
      961 cctatctaaa caattttagt gtgtattgat tttgatttta tcagaacaat ttctagcttt
     1021 gagggtatag ttggtaatct actgatacgt aagccatcat gcattacgga attaggctag
     1081 tattataggt tttaataccc ttctaaatgt ttgataatta agaaatcaca aagaaaaaac
     1141 gaaagtagta gcaataatga aaaataaact tatcagaata tcaaggacat ctagatatta
     1201 caattgttat gtccatagct aggtaacgaa cgcattaaac actcaaatta gagtatgaga
     1261 atagttcaaa atcaagaaga agatgcccag aggtattgtt tatgttataa aatatgttct
     1321 ggtaatccaa ctattcagtt cctacgatta gcaagcaaat ttctctttaa gcagctcttc
     1381 ggtttggaaa aaatttatgg caggtctatt atcttatgga cctgctgcat actcaagaac
     1441 ataatagagt gagatactat tgaatgtttt tttacagtat ttcaaataga tggagagtct
     1501 tgcagaatat atgtgaccca agtgttaaca tatatacata tatacatata tacattactt
     1561 ccttctacat atattgggat agagctattc cctctctaga tttcatttct ctctgtgtct
     1621 ttattttact tactgcctga tcaaaatgtt tcatcgaaat tgatgcctca gaagcatgtt
     1681 ttgctgcttc ttctggtgta gagtatctgc gtaggtattc atgcaataca agtgatattg
     1741 cagtattagc gatcgctgat acatcagctc cactaaatcc atctgttatc tctgctatct
     1801 ttttcaagtc cacatcagga ttcataggtt taccttttgt atagatttcc agaatctttt
     1861 gtcttgttgt tttgtctggc ttgggtacaa ataggatctt atcaaatcgt cctggtctaa
     1921 gcaatgcagg gtcaattaca tcaaccctat tagttgctgc aagtacaact actccatgca
     1981 actgttcaat accatctagc tctgtgagaa gctgtgacat tatccttgta tttattcctc
     2041 ctattccttc tcctcctcct ccaccttcca ttccccctgt cccacctctt gtaggtgcaa
     2101 tagaatcaat ctcatcaaag aatactacgc atggtgctgc ttgctttgct cttctaaata
     2161 tttctctaat tcctttttca gattcgccta cccattttga catcaattct ggtcccttta
     2221 cagcaatgaa attagcttca gactctgtag ctactgcctt tgctagtaaa gtcttacctg
     2281 tacctgacgg tccatgcatt aacaaacctt tggggataga atgtcctaat ttcttgtata
     2341 gatctgggta ccttagcggc cattctactg cttcttgcaa ttcacgttta acctcttcta
     2401 gaccgcctat tgctgtccat ggaacatcag gagattcaag gtacacttct ctcattgcag
     2461 atggcattac atctcttatc gcattttcaa aatcagctcc aattatcatt aatttattta
     2521 agacctctgg cgcaagtttt tcatcctcca agttaagctc aggtagtaat cttctcaaac
     2581 atttcatggc tgcctctttg cacaagtatt caaggtctgc gcctacaaaa ccatgtgtta
     2641 ctgccgcaac tctatcctga tcgacatctg tgtctagggg catattgcgt gtgtgaattt
     2701 gcagtatctc taatctacct ctcttatcag gaactttaat ttcgatttct ctatcaaacc
     2761 ttccaggacg tcttaatgct ggatcaattg cgtttggtct atttgtagca gcaattacaa
     2821 taactttgcc tcttgcttct aagccatcca ttagagataa taattgagat actactctcc
     2881 tctcgacttc tccagtgact tcttctcttt ttggtgcaat agagtcaatt tcgtcaatga
     2941 atattataga tggtgccttt tcctttgcct ccttgaagat ttctctcaat ctagcttcag
     3001 attcaccata gaatttgctc attatctcag gtccagagat actgatgaaa tgagcattgc
     3061 tctcattagc tactgccttt gctaacaaag tcttacctgt accaggaggt ccgtaaagta
     3121 atacaccctt tggagcttca atacctagct tctcaaaaat ttctggatgt cttagcggaa
     3181 gttcaatcat ttctctaact ttttgaatct cttcttttaa tccaccaatg tcctcgtatg
     3241 taacctgtgg tactcctcgt agagtttcac ccttttcagc aatatgaaat attgtcttct
     3301 gggttactag aacagcgtcg gcggctggag ttactcctat aacctggaat gtgagcctac
     3361 caccgaaata aggaaccatt acattgtctc ccttgataag cggaacactt tcaagagcat
     3421 cagctaaata ccgttcatca ataggaggta ttgcttctaa aggagcaact ataactttct
     3481 cagctggaac tgctttgatt tttcttacta caacagtatc acctatggct acacctgcat
     3541 tattccttac aaggccatca actctgatta ttcccttgcc ttcatctgaa ggataaagtg
     3601 gtaaacactt ggcaactgtt cttctatctt ttcctttaat ctctataaca tctcctgtgg
     3661 aagcacttaa agaatccatg gaatcatagt caattcgagc aactcctcgt ccaacatctc
     3721 tggtgtaaga ttcaagaatc tttaaagtat aagtcatgac gataaagtac cttttaaata
     3781 actctttata cgcctttgta taacaatttg tcagccattt acgattcaag atgaagatgg
     3841 gaagcc
//
LOCUS       DASQSJ010000356         4914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_63742, whole genome shotgun sequence.
ACCESSION   DASQSJ010000356 DASQSJ010000000
VERSION     DASQSJ010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4914
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63742"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..444)
                     /locus_tag="VE223_07000"
     CDS             complement(<1..444)
                     /locus_tag="VE223_07000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HZC21375.1"
                     /translation="MKVKLEDKNVDDSNNDNLLPIICTIDTLRTLIKKKLVRVVDVRK
                     AEDYQQEHIPTAVSLPLAVLLEKDTPEGVVDILGSLGISDKMPTVIYDDTFGALAARV
                     AWTFQYVGHTNTALLEVTFSHWKNLGLETEKNINTFPKTQHSLNIN"
     gene            complement(441..2282)
                     /locus_tag="VE223_07005"
     CDS             complement(441..2282)
                     /locus_tag="VE223_07005"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HZC21376.1"
                     /translation="MKNKTSTNISSEQKNISFSKSNYKWSREEESDSFAQKVKLFRQG
                     RLSEDDFRRFRLQHGAYGSRLQMNYSMVRIKIPSGEISPEQLEKIANLSEAFSIGSAH
                     VSTRQNIQLHWVQLEDVSEVMRGLAEVGLTTREACGNTVRNVMCSHFAGVCPEEAFDA
                     TAYAKAIARFFIRNPMCQNLPRKFKINFGCCNKHGLVRIADIGLIPVIMDGERGFKIY
                     LGGGLGAASFIGHLLEDFTPENKLLSTSMATIRLFDRHGNRENMARNRMRYLVHEMGW
                     DKFQKMVLKERSIVQMTTAASTAKLFDVRAEETEQLPKTEHTMAKLPILKEQVTTIES
                     PSYERWLHTNVVSQKQWGYFTVFITLGAGDITANQLRVLAATIHDFSAENAARNTPQQ
                     NLAIRFVKENDLNEFYNRLASVGLANPGALTIASAVGCSGTTSCNLAITNSHRLAKEV
                     QHKFLELGFDTDDDLRDSTIKISGCPNSCGQHEIATIGFFGGASRIGTAMAPTYTMLF
                     GGSAEEQGELGKAIMRIPAKRVIDTICRIIEIYKQEKSSTETLKQWINKIVRGEGTGS
                     IKSIENIKTALTSFTLLPPVEQEPESYRDYGTDIKFNAKTARGECAA"
     gene            3050..3826
                     /locus_tag="VE223_07010"
     CDS             3050..3826
                     /locus_tag="VE223_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HZC21377.1"
                     /translation="MVVETSVLISAFAGLGSFLSPCILPILPGFISYLSGTAANEAKN
                     SETTGITTANDGRQSLTIKRATRLNVFLNTVYFVLGFSLVFSVLGVVLNSVLATYGNG
                     FQHSLTSIGGIVIVAFGVYLILSTKLRTLNFEKKMTRLPRFKTSYVTSLVFGAAFAAG
                     WTPCVGPILGSTFALAASHPAAAYNSLLAYSLGLGIPFLITGAFFSRATGLIRRMVKH
                     LKYFNPAMGGILIVVGILLFTNQLILLSNFPLVNQLINLG"
     gene            3872..>4914
                     /locus_tag="VE223_07015"
     CDS             3872..>4914
                     /locus_tag="VE223_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HZC21378.1"
                     /translation="MNRDNFSALLMAIAVVSVIIGFAIYFNSPSVNKASSSSAAQQQV
                     EKFVSAATVQNGTITTIKLDKAQFQHIDKSQFVKAPEFAQIAGYINTPNNSPLTLSSL
                     RGKVVLVDFWTYSCINCIRTLPHINDWYQKYADKGLVIVGVHSPEFEFEKNYDNVKAA
                     VQRLGITYPVLLDSAHGTWDAYGNQYWPRDYLIDTDGYIRHDHIGEGGYDQTEKAIQS
                     LLAERAALMGAKEISFSTKPTVIKPGSLQSVDLTKGTTPEIYLGYDKARAPLGNPEGF
                     KPDQVVSYSIPSNTNFTPDVVYLQGNWKNNPDNIELQSDTGRVVLIYYAKSVNIVAGG
                     KGGGVVSNDGGATL"
BASE COUNT         1443 a          953 c          907 g         1611 t
ORIGIN      
        1 atttatattc agagaatgct gtgtctttgg aaatgtgttg atgttcttct ctgtttccag
       61 ccctaaattt ttccaatgac taaatgttac ttccagcagt gcagtattcg tatgaccaac
      121 atattgaaaa gtccacgcaa ctcgagccgc taacgcaccg aatgtatcat cataaatgac
      181 agttggcatt ttatctgata tccctaggct ccccagaata tctactactc cttctggcgt
      241 atctttttct aatagcacag caagtggcag cgaaactgcc gttggaatgt gttcttgttg
      301 gtaatcttct gctttacgga catctactac tcgaactaat ttttttttta ttaatgttct
      361 taaagtgtca atagtacaga taatgggcag caaattatca ttattgctat catctacatt
      421 tttatcctct agtttaactt tcaagcggca cattctcctc tggcagtttt tgcattaaat
      481 ttaatatcag tgccataatc tctatatgat tctggctctt gttctactgg aggtagaagc
      541 gtaaatgaag taagtgctgt tttgatattt tcaatactct ttatactgcc tgttccttct
      601 ccccttacaa ttttattaat ccactgcttc agtgtttcgg tactagactt ctcttgtttg
      661 tatatttcaa ttatcctgca aattgtatct atgacacgct ttgctggtat acgcattatt
      721 gccttaccta attccccctg ttcctctgcg cttccaccaa atagcattgt atatgttgga
      781 gccattgcag ttccgattct tgacgcaccg ccaaagaatc caatcgtagc aatttcatgt
      841 tgtccacacg aatttggaca accgctgatc ttgatcgtcg aatctctaag atcatcatca
      901 gtgtcgaacc ctaattccaa gaatttgtgc tgcacctctt ttgctagtct gtgagagttt
      961 gtaattgcta ggttgcacga ggtagttcca gaacatccaa ctgctgatgc aattgttaat
     1021 gccccggggt ttgccagacc aacagatgct agcctgttgt aaaattcatt taagtcattc
     1081 tcctttacaa aacggatcgc caggttctgt tgtggtgtgt ttctcgcagc attttctgca
     1141 gagaagtcat gaatcgttgc tgctaatact ctaagttgat ttgctgtaat atcgcctgct
     1201 ccgagtgtta taaatactgt aaaatagccc cattgttttt gcgagacaac attagtatgc
     1261 agccatcttt cataagatgg gctttctata gtagtaacct gttcctttaa aatggggagt
     1321 ttcgccattg tatgttctgt ttttggtaat tgttcagttt cttctgccct gacatcgaaa
     1381 agttttgctg tagaggctgc tgtcgtcatc tgaacaatcg agcgctcctt gagtaccatc
     1441 ttttggaatt tatcccatcc catttcatga actaaatagc gcattctgtt tctagccata
     1501 ttttcacggt taccatgcct atcaaatagc cgaatagtag ccatgcttgt tgaaagcagt
     1561 ttattctctg gtgtaaagtc ttctaacaaa tgacctataa atgaggccgc accaagacct
     1621 ccgccaagat aaatcttgaa gcctctttct ccatccatga tcactggtat caaaccgata
     1681 tctgcaattc ttactaatcc atgcttattg caacagccaa aattaatttt aaactttcgt
     1741 ggaaggttct gacacatcgg atttctaata aaaaatcgcg caattgcttt ggcataggca
     1801 gtagcatcaa acgcttcttc tggacagaca ccagcaaaat ggctgcacat tacatttcga
     1861 actgtattgc cgcaggcttc tctcgtagtg agacctactt cagctaggcc tctcatcacc
     1921 tcgctaacgt cttccaactg tacccagtga agttgaatgt tctggcgagt agagacatgc
     1981 gctgagccga tcgagaaagc ctcagacaaa tttgcaatct tctcaagttg ttctggacta
     2041 atttcaccac ttggaatttt aattctaacc atactataat tcatctgcag tctagaacca
     2101 taggcaccat gctgcagcct aaaacggcga aagtcatctt cagataacct gccttgcctg
     2161 aaaagtttaa ccttctgagc aaaagaatcc gattcctcct ctctactcca tttgtagtta
     2221 gattttgaaa atgaaatatt cttctgctca gaactaatgt tagtactagt cttgttcttc
     2281 aatactatct attccggaaa atgaaaccat atatcttttg tggaaacagg atatattggt
     2341 accctaatag gaaaatagcg gcaaaaatta ctttgaatac taatcaattt tgtgatctat
     2401 taagcgtaat tatttatttc atagcacaga tacaaataaa tttttatcaa ttctttaatt
     2461 tattgttaaa tctaacataa cgtcaggagg gcctactttt aaattgtcat ttttatgacg
     2521 agccgctctt ggtttggtat tgtaagtcct ataaatgaca tctaaagaaa atatcctgat
     2581 agtgatgata atctaggaac catctacgtt cttccaagag ggcgttcatt ttttgatttt
     2641 aaattggaat ttttgatttt agccatctat ccaaaagtgt caccgatatc agtcaaaaac
     2701 attcttctga atcaattttt ctttttcttt cactataaat taccgaattt gaattagaga
     2761 gatagaatta tcatggatgg atgcataggc acataggtta taatctatat atgaattaga
     2821 actcacatga tagagcagct attctactac tactaccact attactattg ttatttttgg
     2881 tagatatcaa gttacacttt aaattcactg aaacttgcaa tattatccta gctatattta
     2941 ggcgtgatat atcaaattct ggaggtaatt tggaaataag tataatacaa acttggacgt
     3001 cgtgttgttt aatggttaat acttcgaagg aggttattga ttacatccaa tggtagtaga
     3061 aacaagtgta ttaatttctg catttgcagg attgggttca tttttgtcac catgtattct
     3121 tccaatattg cctggcttta tatcgtatct ttcaggaaca gctgcaaatg aagccaagaa
     3181 ttcagaaaca actgggatta caactgcaaa tgatggtaga cagtctttga ctattaagag
     3241 agcgactaga cttaacgttt tcctcaatac tgtttacttt gttcttggtt tttcactagt
     3301 attttcagta ttgggggtag ttctgaatag tgtccttgcg acttatggaa atggatttca
     3361 acactcactt acatcaattg gtggaattgt aatagttgca tttggtgtat acttgatttt
     3421 atctacaaaa ctacgaacct taaactttga aaagaagatg acaagattgc caagatttaa
     3481 gacaagctat gttacttcat tagtctttgg agctgcattt gcagcgggct ggactccatg
     3541 tgttggacca attctgggaa gcacatttgc actagcagct agtcatccag cagcagctta
     3601 taattcactg ttagcatact ctttgggatt aggtatacca tttctaatta caggtgcttt
     3661 cttttcacga gctactggtc taatcagaag gatggtaaag cacctaaaat actttaaccc
     3721 cgcaatgggt ggaatactga ttgtcgttgg tatattacta tttacaaatc agttgattct
     3781 actatctaat tttccacttg tcaatcagtt gattaacctt gggtgatgaa tttagaggta
     3841 tagataaaaa gaatagaggg tgatttgaat agtgaataga gataatttta gtgcgctact
     3901 tatggcaatt gctgtagtct ctgtaattat cggctttgca atatatttta acagccctag
     3961 tgttaacaag gcatcgtcat catcagccgc acagcaacaa gtagaaaaat ttgtttcagc
     4021 agcaactgta caaaatggta caataactac gataaagctt gataaagctc agtttcagca
     4081 tattgacaaa tcacaatttg taaaggcacc tgaatttgcc caaattgccg gttacattaa
     4141 tacacctaat aatagccctt tgacactttc atctttgaga ggaaaagttg tacttgtaga
     4201 cttttggaca tacagctgca ttaactgcat acgtacccta ccccatatca atgattggta
     4261 tcaaaaatat gctgacaagg gcttggtcat agttggagtt cactcgcctg aatttgagtt
     4321 tgaaaagaac tacgacaatg taaaggctgc tgtgcaaaga ttgggaataa cttatcctgt
     4381 attgctagat agtgcccatg gaacttggga tgcatatgga aaccagtatt ggccaaggga
     4441 ttacttaatc gataccgatg gatacataag gcatgatcat ataggagagg gtggttatga
     4501 tcagacagaa aaggcaattc agtcattgtt agctgaacgg gctgctctta tgggtgcaaa
     4561 agagattagt ttcagtacaa aaccaacagt aattaagcca ggaagtttgc aatctgtaga
     4621 tctaacaaaa ggcacaacac cagagatata cttaggatat gataaagcaa gagcaccact
     4681 tggaaatcct gaaggtttca aaccagatca ggtagtttca tactcaatcc catcaaatac
     4741 taatttcaca cccgatgttg tatatcttca aggcaattgg aaaaacaacc ctgacaatat
     4801 agaattgcaa agcgatactg gacgtgttgt gttaatttat tacgcaaagt ctgtgaacat
     4861 agtggcagga ggaaaaggtg gaggtgttgt ctctaatgat ggaggagcaa cact
//
LOCUS       DASQSJ010000357         3341 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_419535, whole genome shotgun sequence.
ACCESSION   DASQSJ010000357 DASQSJ010000000
VERSION     DASQSJ010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419535"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VE223_07020"
     CDS             <1..359
                     /locus_tag="VE223_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21379.1"
                     /translation="EQQKQQMQQSYNNGDATRLQSYMESNRMWIPMMLFSGIMDMMFF
                     TSIMSFMGISMNPMESALIGGDTGNQDIGSNADGTYAVADQGGASGEVDNNISGYDYD
                     NVGYDGFDDGGSFDSF"
     gene            complement(639..869)
                     /locus_tag="VE223_07025"
     CDS             complement(639..869)
                     /locus_tag="VE223_07025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21380.1"
                     /translation="MTRFNDYYYYLKTIRWILNNSLAETTFLLPSLTMAQEIQKERKN
                     LDEEKIKYAIDIDLEKWSEYKVKRLAEEVRMD"
     gene            complement(1556..3049)
                     /locus_tag="VE223_07030"
     CDS             complement(1556..3049)
                     /locus_tag="VE223_07030"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC21381.1"
                     /translation="MKVEPNRVGQFPFRKTNPEERKNNFSEVQQPYTEDEVMREADRC
                     LLCGTPVCIDACPVLLDVRGMNEAVARGDFKKAHERIRETNPLLGVTARCCPQLQGLC
                     EDACVLRWSGQPIGIGLIQRYVADWERRQQQQKQSDASILPDTGKKVAVIGAGPGGLA
                     AAELLRRYGHHVTVYEELSMPGGTAWYGIPDYHLPKDVLLYEVERIKGMGVEIKTGLK
                     VGKDIMLSQLTYGNDAVLIATGSKDTLKLDTPGIDLNGIYDGYQFLETVFVNGVENYM
                     KNNPNKHHLGEEVIVIGGGDTALDCARTALRLTKGNVTIVYRRTENDMPADPIMLEEA
                     KEEGVKLKFLAEPQSYEGADGQVVRVVMNSMQLGAPDHTGRRSPEPIANKQFNMECSS
                     VLLAIGREPNSFLQKKAGIKTGKKNSIEINDEYKTSMTGVFAAGDVTTGETLVVKAMS
                     SGREAAQRVHEYLMNLEENHMSFYEKYYTDNLYDRMLEGGETGPPPE"
BASE COUNT          902 a          686 c          609 g         1144 t
ORIGIN      
        1 tagaacaaca gaaacaacaa atgcagcaat cttataacaa tggcgatgcc actcggctgc
       61 aaagctatat ggaatctaat agaatgtgga taccaatgat gttattctcg ggcattatgg
      121 atatgatgtt tttcacatct ataatgtctt ttatgggaat aagcatgaat ccaatggaaa
      181 gcgcattaat aggaggagat actggtaatc aggatattgg ctctaatgct gatgggacct
      241 atgctgtcgc cgaccagggc ggagcatctg gagaagtaga taataacatt agtggatatg
      301 attacgataa cgttggttat gacggattcg atgatggcgg tagttttgat agtttctgaa
      361 aatctgatag ataatatttt gcatcctgaa tctttgtata tactttgtac tattgatgtt
      421 tgtgtatata ctttgtactg ttgatgtata tcatttaaat ggtgtgttat aaccatacaa
      481 aggagagaaa agcttaactc gaatatgctg agcttgcacg aatccctttg ggttgatatt
      541 atcaatatca tcacaatttg cgatgatgat accaacctgt ttgctactaa ccgctagccg
      601 ccagcagctg atcaggaagg aaggtaatca taccattact aatccatcct tacttcttcg
      661 gccaaccttt tgactttata ttctgaccac ttttctaggt ctatgtctat tgcatatttt
      721 attttttctt catcaagatt ttttctttct ttttgtatct cctgtgccat tgttaaagat
      781 ggtaatagaa aagtggtttc tgctaaggaa ttatttagaa tccatcttat agtcttcaag
      841 taataatagt agtcattaaa acgagtcatt tttgatatag taatagctat tacatcaggt
      901 ttaaatgttc ttcagtttct ttgtagtgaa gattctaatt tgtaatacat aactatcgct
      961 tcaagaataa cgatggcttg cgggataatt gtcagtatgt atggttgtta tcttcttgtt
     1021 cttttctatc tatgtctacg gcggtccacc ttcttctctt tttcctcttg tacatgatgt
     1081 aatctatctt cttcgtgcaa gaattccatt ccacagttgc ggcatcttat aatagactgg
     1141 tgatgtactt ttcttgcatg ttctatgaga tcttgatgtt tatcaaatct ctcatgacat
     1201 atcttgcatt ggttttttga ccgatgtaag aatcccatca tatatatacg cagatataat
     1261 attgttaatg ttgaatataa gccgagcgtt ataattttat aataattata aataaaatat
     1321 gcttttttag taagattcag tactagtagt ggtaaaaaag ttgtgtcttt tttctcatct
     1381 ctgttgtagt gtctttttaa gcttcaaacc tttgatttct atctcacaat tatcaaacta
     1441 gaactgaatt gatattatat cgtcttggct aacttatacg gatgctaacg tttgagtctt
     1501 gagatgtgag ctaccgccaa actacacata ttccttttta atgctatggt ggagtttact
     1561 ctggaggtgg tcctgtctct ccaccttcta gcattcggtc atacaaatta tctgtgtaat
     1621 acttctcata gaatgacata tgattttcct ctagattcat tagatattca tgcaccctct
     1681 gggctgcttc ccttccagaa ctcattgcct tcacgacaag agtctctcct gttgtcacat
     1741 ctcctgcagc gaatactcct gtcattgatg ttttatactc atcattgatt tctattgaat
     1801 ttttcttgcc cgtctttatg cctgccttct tctgaagaaa tgaatttggt tctcttccaa
     1861 tagctagcaa aacacttgag cattccatgt taaactgttt gtttgcaata ggttcaggac
     1921 tccttcttcc cgtgtggtcg ggcgcaccaa gctgcattga gttcataact actcttacaa
     1981 cctgaccatc ggcgccttca taagattgcg gctctgctag gaacttcaat ttaacccctt
     2041 cttcctttgc ttcttccaac attataggat cggctggcat gtcattttca gttctcctgt
     2101 atactatggt gacgtttcct ttggtcaacc tcaatgcagt tctggcacag tcaagtgctg
     2161 tgtcccctcc accgatcacg atgacttctt ctcctagatg gtgtttattt ggattatttt
     2221 tcatatagtt ttccacaccg ttaacgaata cagtttctag gaattgatat ccatcgtaaa
     2281 ttccattgag gtcaattcct ggagtatcta gtttgagagt atcttttgag cctgtggcaa
     2341 taagcaccgc atcatttcca taggtgagtt gagaaagcat aatatctttg ccaaccttaa
     2401 gacccgtttt tatttcaaca cccattccct taattctctc aacctcataa agcaatacat
     2461 cctttggaag atgataatct ggaataccat accaagcggt tccacccggc atagataatt
     2521 cttcgtatac agtcacatga tggccgtacc ttctgagaag ctctgctgct gctagacccc
     2581 caggaccagc accaatcaca gctacttttt tccctgtatc aggtaaaatt gaagcatctg
     2641 attgcttttg ttgttgttgc ctacgttccc agtctgcaac gtatctttga atcagtccga
     2701 ttccaatagg ctgaccgctc caacgcagca cacaagcgtc ttcacacagg ccctgcagtt
     2761 gagggcaaca tctcgcagtt actccaagaa gtggatttgt ttctcttata cgttcgtggg
     2821 ctttcttgaa atcgcctctt gcaacagcct cgttcatgcc tctgacatcc agaagaacag
     2881 gacaagcatc tatgcataca ggagtaccgc ataggagaca ccgatcggcc tctctcatga
     2941 cttcgtcttc tgtatatggc tgctgcacct cagagaaatt gttctttctt tcttcgggat
     3001 ttgtcttgcg gaaaggaaac tggccaacac ggtttggttc caccttcatt agattcaatg
     3061 atcacctatt gcatacttat tatattcttt tatcatacaa attagtcttg cattgtaaca
     3121 gccagcaatt acaggtctac cacaataaat atttaatacc taaataatag acaaaattac
     3181 gatgctttgt agaggatgcg gaaatgagtt aattgccttt gaatattgtc ccgaatgcga
     3241 tgaagctatc cattggaaat gcactagttg cgagagggaa aacgaaaagt cggtgcatac
     3301 acatactaat atgcgaaaag tgcaagacct atctaagaag g
//
LOCUS       DASQSJ010000358         5977 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_64458, whole genome shotgun sequence.
ACCESSION   DASQSJ010000358 DASQSJ010000000
VERSION     DASQSJ010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5977
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64458"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1037)
                     /locus_tag="VE223_07035"
     CDS             complement(<1..1037)
                     /locus_tag="VE223_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1512 domain-containing protein"
                     /protein_id="HZC21382.1"
                     /translation="MLIFSLLLQINSIFGGGSDSGNNPLTYILWFAPIFLLMIYGQKF
                     QSWMILSDVSKSLTKLKTMKDGARKEAIDYVKTSIKPSTDPCERIDRFLEYFTIMPVD
                     LDPSGIVGKLDHIIRTRDERIRSEIKRMAEGMTESHASRVENILEAATALNMIYKVVR
                     HFYLMGKRTTSMFVLVQLQMVMPLLLQEAEALQNAIGAFKEGQPIGDSIGPMIVGKMM
                     IGKDKKIIARETVYTEGEYMNRKLYLLKAEGPGGAVGRPGEAVQRLVGEIGLKIDAII
                     MIDAALKLEGETTGAVAEGIGAAIGGIGVEKYQIEEVATSFNIPVYAIIIKESIQDAI
                     TIMRKEISDSF"
     gene            1671..1898
                     /locus_tag="VE223_07040"
     CDS             1671..1898
                     /locus_tag="VE223_07040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21383.1"
                     /translation="MTSDENEQQKTKNKIAFVILRMPDGKEHEIPLPAKTFKSGREGY
                     YAQVPSFVYENEVYGGQIQIWKKGDGNKNQG"
     gene            complement(2421..3788)
                     /gene="purB"
                     /locus_tag="VE223_07045"
     CDS             complement(2421..3788)
                     /gene="purB"
                     /locus_tag="VE223_07045"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HZC21384.1"
                     /translation="MPILPIDSGRYGSTEIKQIFEEKERLQYQLDFEAAVAESQAQIK
                     MIPVDAAKEILKQAKSGRVTLKRVKELEAKSEHDMAALVECLSEQCSDKAKPWVHYGL
                     TSNDVIDTSTSMQMKDAFNIIEPKISKLADILIGRAIEFRNQPAVGRTHGQHSSIISF
                     GLKFAVWADEMAKHIERIEEGKKRFLLCKTLGVVGTGSLMGERALEVQQTVAKALGLY
                     AVDAATQVIPRERFAEMQFLIALVGSTLDKIAIEIRNLQRTELGEVAEPFRKDQMGSS
                     AVPVKRNPIKSERVSSLAKILRSIVSVAMENIALWHERDLSNSANERFTIPMSTILLD
                     DMLNTMTRVISELKVNKERIASNLDMTMGQIYAEFILEALVKKGIPRFEAYRNIQRIA
                     FTSQERKDPFYHAIKEDPNISKILSSMELTTIFDANNHLSASSKIIDHVANIVNNTNK
                     KISTL"
     gene            4164..5639
                     /locus_tag="VE223_07050"
     CDS             4164..5639
                     /locus_tag="VE223_07050"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HZC21385.1"
                     /translation="MSELLTKSGNHKVRKVNDFEFRIEKDPSKGMRVPVTIYATDNLV
                     SKMVADRTVDQAANVSTLPGVRKHVVVLPDGHEGYGFPVGGVAALDLEEGVISPGGVG
                     YDINCGVRLLRTSLTEKDARPKIKDVVNQLFRSIPLGVGREGSIKLSKSELDELLVEG
                     VNWAIEHSYGWEEDAEVCEEDGRMVGAEPASVSDIARKRGSLQLGSLGSGNHFLEVQK
                     VNKIFDESAAKAMGIDQEGQLTVLIHCGSRGFGHQVCSDYLRVSEIALRKYGMKIADR
                     ELACVPNNSSEGEDYRNAMYCALNFAWCNRQLITHWTRKTFQKVFGMPEQQLDMKLVY
                     DVSHNIAKTERHKVEDGQMRNLIIHRKGATRAFPAGMDQIPSKYRNIGQPVIIPGSMG
                     TASWILLGNKKSFDLSFGSTAHGAGRTMSRSAAKRSYSAEDVKKGLESKGIYVKALTK
                     EGVVEETPNAYKDVDAVADVSHSLGIATKVVRLVPIGVIKG"
     gene            5639..>5977
                     /locus_tag="VE223_07055"
     CDS             5639..>5977
                     /locus_tag="VE223_07055"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HZC21386.1"
                     /translation="MSKEEELQDPDIAIIKARKMKALREQAAALERARIKNQEEQQST
                     TRPKKTDREIISDYLYNRGEEVLNIAETQFPIQTKSLISGIVELIKMGEVKQRISGGE
                     LLALFRSVGLN"
BASE COUNT         1894 a         1084 c         1146 g         1853 t
ORIGIN      
        1 tcaaatgaat cagaaatctc ctttcgcata atagtgattg catcttggat agactccttt
       61 attataatcg cataaacagg aatgttaaaa cttgtcgcaa cttcttcaat ctgatatttc
      121 tcaactccga tgccacctat agcagcccca atgccttcag caacagcacc tgttgtttcg
      181 ccttccaact tcaatgctgc atctatcatt attatagcgt caattttcaa accaatctct
      241 cctactaatc tttgaactgc ctccccaggc cttcctacag ctccaccagg gccttctgct
      301 ttgagcaaat acaattttct attcatgtat tcgccttcag tatagacagt ctctcgtgca
      361 attattttct tatcttttcc aatcatcatt ttcccaacaa tcattggacc tatgctgtct
      421 cctattggct gaccctcttt gaaggcacct attgcatttt gcaacgcctc tgcttcttgt
      481 aatagaagtg gcatcaccat ttgcaattga acgagtacga acatgcttgt tgtacgcttg
      541 cccatcagat aaaaatgccg tacaaccttg tagatcatat ttagagcagt cgctgcctca
      601 aggatgttct ccacacgaga ggcatgggat tcagtcattc cctctgccat tctctttatt
      661 tcagaacgaa tcctttcgtc tctggttcta atgatatgat ctagctttcc aacaatacca
      721 gatggatcaa ggtcaacggg cataattgta aaatattcaa gaaatctgtc aattctctcg
      781 caggggtcag ttgaaggctt gattgaggtt ttaacataat ctatcgcttc tttcctcgcc
      841 ccatctttca ttgtctttag ttttgttaaa gactttgaaa cgtcactgag aatcatccac
      901 gattgaaatt tctgaccata gatcatcaaa agaaagattg gtgcaaacca cagaatgtac
      961 gtcagaggat tgttacctga atcagaccct cctccgaaaa tactgttaat ttgtagtagc
     1021 agagaaaaga taagcatgtt ttagagtatc aatccaaatt gattggattt ttaatcacaa
     1081 ttaaaggtta ctttgcaaca agtcaaacag tttatagagc catcagttaa tatcgttatt
     1141 aatgataata ataatattat taaaaataac ttgctgttgt tgttgttgtt gttaatctaa
     1201 tctcacatga tcacatttgg ataattatta tttatcaggg ttattgttat tgttcgtttt
     1261 atatttggtg aattattaga agtttttgaa ttcttgtatt gtggttgtgt tgtttaagaa
     1321 taaaaaagaa ctgattttga agcattaact aaatatgcat actttgtgtc ccacaattcc
     1381 tcaccatttc tatgccgaag aaatattcgg atatgcatca ctgcatgaac cgcgaagagt
     1441 ttattttaaa aagatatact gctttgtcgt ctcaaaaaga ggaaccatta taataatgat
     1501 ttgttaatat ctccatctta ggataaaaaa gtaataattt tgatgatgat gataacaaca
     1561 ttgcacataa tctaaatggg atcaacaata ttctcaacaa tggatttacc atttattatt
     1621 gagaaagcca ttaacattaa aaataaggat taagacatta ttattagact ttgacatccg
     1681 acgagaacga acaacaaaaa acaaaaaaca aaattgcttt tgtaatactt agaatgcctg
     1741 atgggaaaga acatgaaata ccattgccgg ccaagacttt taaatctggt agagaaggct
     1801 actatgctca agtgccatca tttgtttacg aaaatgaggt atatggtggt caaatacaga
     1861 tatggaaaaa gggtgatggg aataaaaatc aaggctaaca agtgacacgc atggacaatc
     1921 tcgatcagtt ttgaaagaag ttgctgctca tatagcttga aaatactcag ttgtagatca
     1981 tcctcaatta cttgtgttaa tgttattctt gacctatgat ataagcaaac ggtgcacgtg
     2041 tttatgtatt aagcttcata tgcttggcgg actaatctcg caataaaatg cagcaatcat
     2101 attaagagta gattctttca acaaaaggag gccgcaccta tcgtcttaac cgagggttgg
     2161 cagtatgact ttattttata tctgcgagta taaaatcccc aacacatgat ccttataaca
     2221 agatattgcc tcactcaaaa tagcttataa tggctatatc aatcaattat tttcctactg
     2281 atttatttaa aatgtgctaa atttagaaaa tataatttta tgattattgt aattattcta
     2341 cgaaaagtta aaataaaaat ttaagaactt tttttgacct agcataacta gcatgagagt
     2401 agaacattgt tagttgtact ttacagagta gaaattttct tatttgtgtt atttactata
     2461 ttggcaacgt gatcgataat cttcgatgat gcagaaagat gattattagc gtcaaatatg
     2521 gtagtcaatt ccattgatga caggattttg gatatattgg ggtcttcctt tatagcatga
     2581 tagaaaggat cttttctctc ctgtgaagta aacgcaattc tttggatgtt cctatatgct
     2641 tcaaatctag ggatcccttt cttaactaat gcttcaagga taaactctgc atagatttgg
     2701 cccatagtca tatctaggtt agaagcgatt ctttctttat ttaccttgag ttcagaaata
     2761 actctagtca ttgtatttag catgtcgtct aggaggattg tagacatggg aatagtaaag
     2821 cgttcatttg ccgaattcga tagatccctc tcatgccaca aagcaatgtt ttccattgcg
     2881 acactaacaa tagatcgcag aatctttgca agcgaagaaa ctctctcact tttaattgga
     2941 ttgcgcttaa ctggaactgc actacttccc atctgatcct ttctgaatgg ttcggcaacc
     3001 tcgcccagct ctgttctctg cagatttctg atctcaatag caattttatc aagcgtagaa
     3061 cctacaagtg caatcaaaaa ttgcatctct gcaaatcgtt cacgaggaat aacctgtgtg
     3121 gcagcatcaa cagcataaag ccccaaagcc tttgctacgg tttgctgaac ttccaatgct
     3181 ctttctccca ttaaagagcc tgtcccaaca actcctaagg tcttacaaag taaaaaacgt
     3241 tttttgcctt cttcaattct ttcaatgtgc tttgccattt catcagccca tacggcaaat
     3301 tttaatccaa acgatataat gcttgaatgt tgtccatgag ttcttccaac tgctggttga
     3361 tttcgaaatt ctattgctct gccaatcaga atgtcagcga gtttggaaat tttgggctcg
     3421 ataatattaa acgcatcctt catttgcatt gaggtgctgg tatctatgac gtcattactg
     3481 gtaagaccat agtggaccca aggctttgct ttatctgaac actgttcact taaacactca
     3541 accaaagctg ccatatcgtg ttcacttttt gcttctaatt ccttgactct tttgagcgta
     3601 accctgccgg attttgcttg ctttagaatt tccttggcag catcaactgg aatcatcttg
     3661 atttgagctt gcgattctgc tactgcagcc tcaaagtcca attgatattg taaccgttcc
     3721 ttttcttcga atatttgctt gatttcagtg cttccatatc gtcccgaatc aattggtaga
     3781 ataggcatat ctgttatcta tctctcttac atacacaaca gcaaatagta gaaaaataaa
     3841 ccttgtcaat cctaatgcat ttggctctaa acattattaa tggtaaaatt cagtattgtg
     3901 gattcattga aatcctgtat tttacattat agtggataac ctgctgtaaa tttgtgatgg
     3961 ttagggtacc atagactttt gacttcaaat attgtctacc ttaaaatctc tttatgggaa
     4021 tattcaacat attttcgaag gtgacttgaa actataaacg aaagacagct attaggtagg
     4081 agaattacga tacacaacat tttaagatcc atatcgggca atggttataa taactcctag
     4141 ataaatccat ttgatgacat gagatgagtg aattattaac taaaagtggt aaccataagg
     4201 tcaggaaagt taatgacttt gaatttcgta tagaaaagga tccctctaag ggaatgaggg
     4261 tgcccgttac aatttatgct actgataatc ttgtttcgaa gatggttgcc gatagaacag
     4321 ttgatcaggc ggctaatgtt tcaacacttc ctggagtaag gaaacatgtt gtcgttcttc
     4381 cagatggcca cgaaggatat ggattccctg taggtggagt agccgcactt gaccttgaag
     4441 agggtgttat cagcccaggt ggagttggat atgatattaa ttgtggcgta aggttgctta
     4501 gaacaagctt aaccgaaaaa gacgccaggc caaaaataaa agacgttgta aatcaattat
     4561 ttagatctat tcctttggga gttggtagag aaggatccat taaactaagc aaatcagagc
     4621 ttgatgaatt gcttgtagaa ggtgtaaatt gggctattga gcacagctat ggatgggaag
     4681 aagatgcaga agtttgtgag gaagacggaa gaatggttgg agccgaacct gcaagtgttt
     4741 cagatatagc gagaaagcga ggctctctcc aactaggtag tttgggttcg ggaaatcatt
     4801 ttcttgaggt acagaaagtt aataaaatct ttgatgaaag tgctgcaaaa gccatgggca
     4861 tagaccaaga gggacagctg acggttttaa tccattgtgg ttcaagagga tttgggcatc
     4921 aggtatgcag cgattatttg cgtgtttcag aaattgcttt acggaaatat ggtatgaaaa
     4981 ttgcagatag agagctagca tgcgtgccaa ataattcatc agaaggtgaa gattaccgca
     5041 atgcaatgta ttgtgcttta aactttgcat ggtgtaacag gcagttgata acacattgga
     5101 cgagaaagac gtttcaaaaa gtatttggga tgcctgaaca acaattagat atgaaacttg
     5161 tatacgatgt ttcccataat attgccaaaa cagagcgcca caaagttgaa gatggacaaa
     5221 tgcgtaatct gattattcat agaaaaggag ctactagagc ttttcctgca ggtatggatc
     5281 aaataccgtc taaatatcga aatatcggcc aacctgtaat tataccagga tctatgggaa
     5341 ctgcgagttg gatcttattg ggcaacaaga aatcttttga tttgagtttt ggatctactg
     5401 ctcatggtgc aggtagaaca atgtcaagat cagctgcaaa acggagctat tctgcagaag
     5461 acgtaaaaaa ggggttagaa tcaaaaggca tctacgtcaa ggcgttaaca aaggaaggtg
     5521 tagtagagga aacgcctaat gcctacaaag atgtagatgc agttgctgat gtatctcatt
     5581 cacttgggat agcaactaaa gtggtaagac tagttccgat cggggtgata aagggataat
     5641 gtcgaaggaa gaagaattac aagatccaga tattgcaatt atcaaagctc gaaaaatgaa
     5701 ggcactcagg gaacaagcag ctgcacttga aagggctagg ataaaaaacc aagaagagca
     5761 acaatcaact acacgaccaa aaaaaactga tagagaaatt atttctgact acttgtacaa
     5821 taggggagag gaggtcctaa atattgcaga aacccagttc ccgatccaga caaaatcact
     5881 aatcagtgga atcgtagaat taattaaaat gggagaagtt aaacaaagaa tatcaggtgg
     5941 cgagttattg gcattattcc gatctgttgg actaaac
//
LOCUS       DASQSJ010000359         3024 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_538025, whole genome shotgun sequence.
ACCESSION   DASQSJ010000359 DASQSJ010000000
VERSION     DASQSJ010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538025"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1606)
                     /locus_tag="VE223_07060"
     CDS             complement(<1..1606)
                     /locus_tag="VE223_07060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HZC21387.1"
                     /translation="MRFGPDTNCDHNNQNSYVKRKDNGKSFSLYYNDLARWLFITLAF
                     SGILSTGWFGIPLAPRYFLNGEIDLISGLFALLSALGTIWGIMAYSEFTRSANLVNDA
                     RDLSRSLDPSIGDYEYRSYNPETREYEEGYVPLGPTDFWDRETQVPNWLDKGKYWHIL
                     LGFQSANKEIMLQVVRDRDLPFTNGKRNVALTYKEHLQRIGSSRKSRKRHVYRIKIPQ
                     WIVMNTERIRLAEIKAAMDVDNVQLSSLIADLNRKLVLAAEEIIEHEKPRIQYPWRIT
                     TIGIYLNKSLPLRIIYRQAIKHFPGSKKRTINETNGNLANVKDNDLIGVIIELAVQKG
                     ISDKRIDNVQALVRFLKNSYTRQGLGEGSSEYHNFHHSLEVTCMGLQMLPKEFRGFSF
                     TPEDYELIMIAGLLHDYDPIQVMNSKDVVTSGTARQKGPKVSRTISEIWKTRILDAYF
                     TMNATDFENYFREYKSTLLPPINFSTTHPEYVKIDKKPAESMIVEALIWHTDFPYDKQ
                     KYAKEKFTETVTLLEKQGYDGAKIKLL"
     gene            complement(1781..2494)
                     /gene="bluB"
                     /locus_tag="VE223_07065"
     CDS             complement(1781..2494)
                     /gene="bluB"
                     /locus_tag="VE223_07065"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HZC21388.1"
                     /translation="MKAFSSCEKEGLYKAIFLRRDIRSNFINKEIPNEVLARILNAAH
                     HAPSVGFSQPWNFILIKDSSARQHVKDSFLKERERSISMLNGDKTKQKKYISLRLEGI
                     MESAVNICITYDSTRFGPFVLGRTSIGETGLYSVCCAIQNLWLAARAEGIGVGWVSIL
                     SNEDLHDILLIPKHIRPIAYLCLGYVSEFSSKPDLEKEGWLSRMKLNEVICYERWGIQ
                     KCNSWTQFNGTVEQMKEKD"
BASE COUNT          881 a          582 c          515 g         1046 t
ORIGIN      
        1 caagtagctt aattttagca ccatcatatc cttgtttttc aagcaaagtt acagtctcgg
       61 taaacttttc ctttgcatat ttttgtttat cgtaaggaaa atctgtatgc caaattaaag
      121 cctctacgat catgctttca gcgggtttct tatctatctt gacatattct ggatgcgttg
      181 ttgagaaatt tataggtggt aataatgtag atttatattc tcgaaaataa ttttcaaaat
      241 cagtcgcatt catagtaaaa taggcgtcaa gaattcttgt cttccatatt tcactaatgg
      301 ttctagatac cttgggtcct ttctgccgag ctgtcccgct agtgactaca tcttttgaat
      361 tcattacctg gatcggatca tagtcgtgta atagacctgc tatcatgatt aattcgtaat
      421 cttcgggtgt gaaactaaaa ccacgaaatt cttttggcaa catttgtaag cccatacatg
      481 ttacctctaa actatggtgg aaattgtgat actcacttga gccttctcca aggccttgtc
      541 tggtatatga gtttttgaga aagcgtacaa gagcctggac gttatcaatt cttttgtcag
      601 aaatcccttt ctgtactgca agttcaatta taacaccaat caaatcgtta tcctttacgt
      661 tggctagatt accattcgtt tcattgatag tacgtttctt tgaaccaggg aaatgtttta
      721 ttgcctgtct gtagataatt cgaagaggca aacttttatt aaggtaaatt ccaatggtag
      781 tgatcctcca aggatattgg attcttggtt tttcatgttc aatgatttct tctgcagcga
      841 ggacgagttt tctattaaga tctgcaataa gggaacttaa ttgaacatta tcaacatcca
      901 tcgctgcttt aatctcagcc agtctaatgc gttctgtatt cattacgatc cattgaggaa
      961 tctttattct atagacatga cgctttcgtg attttcgact tgagccgatc ctttgaagat
     1021 gttccttata tgtgagcgca acgtttctct ttccatttgt aaagggtaga tctcgatcgc
     1081 gtacaacttg taacatgatt tccttattag cggattgaaa gcctagtaat atgtgccagt
     1141 attttccttt atcaagccag ttcggaactt gagtttctct atcccagaag tcagttggtc
     1201 ctaaagggac atatccttct tcatattctc tcgtttcagg gttataagat cgatattcgt
     1261 aatcacctat tgatggatca agactgcggg aaaggtctct tgcatcattt accaaattgg
     1321 ctgatctggt aaattcacta tatgccatta ttccccagat tgtacctagt gcacttaata
     1381 atgcgaacaa gccagatatt aaatcaattt ctccgttcaa aaaatatctt ggtgcaagtg
     1441 gaattccaaa ccatcctgta gataagatac ctgaaaacgc tagtgtaata aataaccatc
     1501 gtgctaggtc attataatag agactaaatg acttaccgtt atctttacgt ttgacgtaag
     1561 agttttgatt gttgtggtca cagttggtat caggtccgaa tctcaatgcc catgcctgcc
     1621 gtataaaaat accgatgcaa agacgattat atattatata ttttaatcgc aagttcaatc
     1681 ttaaacaaga gtatttaatg tctgcaatca agagtaaaaa taaaggatca caagatatca
     1741 acggggttta ctatgatatg caaatagaat cagcaactag ctaatccttc tccttcatct
     1801 gctcaacagt accattgaat tgtgtccaag aattacattt ctgtattccc caacgctcat
     1861 aacaaattac ttcattcaat ttcattctcg acagccaccc ttctttttca aggtcgggct
     1921 tgcttgaaaa ttcacttacg taacctaaac acagatatgc tattggtcta atgtgtttag
     1981 gtattaatag aatatcatga agatcttcgt ttgaaagaat gcttacccac ccgacaccta
     2041 tcccttctgc tcttgccgca agccagagat tttgtattgc gcaacaaaca ctataaagac
     2101 ctgtctctcc aattgacgtt ctaccaagaa cgaatggacc aaatctggtc gagtcgtagg
     2161 taatgcaaat atttacggct gattccatta taccctcaag ccttaaggaa atatattttt
     2221 tctgcttggt cttatctcca ttaagcattg aaattgacct ttctcgttct tttaaaaagg
     2281 agtcttttac gtgttgtctt gcagaactat ctttgatcaa aatgaaattc cacggctgtg
     2341 agaatccaac agatggtgca tggtgagcag catttaaaat tcttgccaga acctcgttag
     2401 gaatttcctt gttgatgaaa tttgaacgaa tgtcacgcct taaaaaaatc gctttatata
     2461 aaccctcctt ttcgcaactt gaaaatgctt tcatagatat cataatatat ttgaaaggtg
     2521 ttgtattaga tttattctat tttctaacta ctagatctat tattaaagat aattcaatat
     2581 ttcacagatc atacaatcaa tgaaggatac acacaagggc taactagatg cagatctagt
     2641 atcctgatta gctactttgc tctgatccta gtcttgaggg gatcggtatt tatttgcaat
     2701 actttttatg actagtagtt tcttcaaaaa cttaacaaga cgatgataga tcaggcaaac
     2761 gttgcattcc atctatctat tattctgttg attaatgaaa ccttgatact aatgcaattg
     2821 gtagaatcaa agatatcata aggtgtgttc tcttgatcta gcggtcttat tttgcctgta
     2881 cgtatcagta catagctttt agcattggaa tcattattct caattttatg aatctatggt
     2941 ctttacttaa agcttatttt tgcacgacac tccggtatta tagtcgaagt ttactatctt
     3001 gctttcctat taatcgcggt catt
//
LOCUS       DASQSJ010000360        15863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_380279, whole genome shotgun sequence.
ACCESSION   DASQSJ010000360 DASQSJ010000000
VERSION     DASQSJ010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 15863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15863
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380279"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1393
                     /locus_tag="VE223_07070"
     CDS             <1..1393
                     /locus_tag="VE223_07070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21389.1"
                     /translation="GSSAGNLYDRKDVHLFIDDGRRFISSTNSKFDKIVIKLVDSWAA
                     QLAGGYALSENYLYTVEAFKQYLQHLNGDNGMLVMVRWNIELPRLMPLVVESLRQEET
                     AGKKSIQDISKQILVVEDRPGLTFGSNAQRTEYPVLVIVKNSPFTSSELDLVKQRVST
                     NDASIIAMPGGYVQPPYDNLLSSTKRNNNGHPQQQQQEQSLSQVSYDLQKKTPFGLKP
                     PTDDSPFYFAKEQIPKQLVLLIETILGVSAALALLLVYYSRVNKIRLTASSRFHLVFV
                     ILIGLGFIFLEITFIQKFLLLLGTPIMALTVILFSILLSSGVGAYLSGRLFKKNPYKA
                     VVISIPLLAAILLAYYVFLQDIISFSIVFQLYQRIMLTFALLSPAGLLMGFQFPSITR
                     MASSSNQDITLLWGVNVIASVIGTVLTTTSSMIIGFNGNLLVGLGLYLGALASGIAAT
                     RITQKVSGTQVIK"
     gene            complement(1694..1906)
                     /locus_tag="VE223_07075"
     CDS             complement(1694..1906)
                     /locus_tag="VE223_07075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21390.1"
                     /translation="MFEHSGHIFAAYGLKRTGKANLGNMEKISRPWFVPAEKVDNLLL
                     YGKMLNAATIVALYRVLYYHRKRSGK"
     gene            2034..2387
                     /locus_tag="VE223_07080"
     CDS             2034..2387
                     /locus_tag="VE223_07080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21391.1"
                     /translation="MENYQKHRPLGVTIIAILTVIGGIAFIAIGTVLLIVGIGFVLIA
                     ISIAYFVMAYGLWNGKRWAWTITLILSGIGIILGIASIAVGNIGAVFHIILNAVIIYY
                     LYRPNVKAFFGKSNL"
     gene            complement(3047..3196)
                     /locus_tag="VE223_07085"
     CDS             complement(3047..3196)
                     /locus_tag="VE223_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21392.1"
                     /translation="MDKSRYNIFLLVFRLSKYDNDICVNGEVLYGGAKMRARTLPRIN
                     SVADE"
     gene            complement(3202..3558)
                     /locus_tag="VE223_07090"
     CDS             complement(3202..3558)
                     /locus_tag="VE223_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZC21393.1"
                     /translation="MAKMQKKNLDSPDETRSFDKGKVELANLGDITIGRGTLEPGWSW
                     EKCVKPISKTNSCQAPHTQYMVSGRMRVVMDDGTEDEFGPGDAMVIPPGHNAWVIGNE
                     PVIAIDFTGLKDYAKK"
     gene            complement(4042..5496)
                     /locus_tag="VE223_07095"
     CDS             complement(4042..5496)
                     /locus_tag="VE223_07095"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HZC21394.1"
                     /translation="MKKKNPPSFSLDGSSKHIVILGSGFAGIEVLKTLQKKFKNDKKV
                     EITLVSRDNFILFTPMLPEVASGMIETRHIVTPIRSFCNKANFYEANIESIDFKNKQV
                     ILRHPIGKQSEPTAWDQHTLKYDYLVIALGSETRFFGMTEVEKHSFTMKSIDDAIAIR
                     NHILSVLEQANLEKENRHLTKSLLTFIVVGGGFNGVETVGELNDFVRETIKTYYKDIY
                     MSDVRVILVSATDKILEQVDEKLGEWALQRLKQKGVEFIMSRHVVGATPNSAKLDDGM
                     VIPCYTIVWAAGVTPTDFVASLSCEHDKRHAVLVNNYLEVLGHEGEVYSLGDCASITN
                     PHTGKPYPPTAQHAVREAKVAAKNIICDIEGKENKKVKFDYKTKGMMAEIGKRTGVAT
                     LFGFKVHGFAAWWIWRTYYLSNLPTIKKKLKVMSDWTMDLIYKPDVSMIKKQTLFTRE
                     EQREKEEGEGKHKEREEQTKSSNNKESQVKANNT"
     gene            complement(5493..5645)
                     /locus_tag="VE223_07100"
     CDS             complement(5493..5645)
                     /locus_tag="VE223_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21395.1"
                     /translation="MWSRREKEKREVEKTMIKIIITNTVEKQGQKTSFLLLPLHMTIM
                     AVNYIF"
     gene            complement(5635..7065)
                     /locus_tag="VE223_07105"
     CDS             complement(5635..7065)
                     /locus_tag="VE223_07105"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HZC21396.1"
                     /translation="MVEVAVAGEKGENKKLKTINPATEEVINQYEIMTKEQIDGIIRK
                     ARNAFDEWKKDINKRIDFIHDFANELRKNKENLAKTATNEMGKAIKEARSEVEKCAWV
                     MEYFADNGEIFLKDEVVNTDARKTVIKFQPIGVIGSIMPWNFPYWQALRFAAPSLIVG
                     NTVVLKPASATMQCGIEIENAFNNIGLPDGAFQTLVGDSSIAETLIDSNDINAVTFTG
                     SVQVGGKVAQRAASQIKKCVLELGGSDPFIVCDDADIDKASTGAVKGRFINCGQSCIA
                     SKRFIITKKVAGEFIEKFVQKSEKLRVGDPLSDDTDMGPLVNSTRLENIESIVKESIK
                     DGAQLLIGGEKVDRKGYFYKPTIIKDVSPKMRIAQEEVFGPVAPIITVDNETEAIKLA
                     NDTQYGLGASIWTQDLDKAEKLSMSIQSGIVTVNNIVASDPRVPFGGVKKSGFGRELS
                     KYGMLEFANIKSVRFYDKLVGYHHVE"
     gene            complement(7071..8150)
                     /locus_tag="VE223_07110"
     CDS             complement(7071..8150)
                     /locus_tag="VE223_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HZC21397.1"
                     /translation="MKAARIVKPKQSLEVQELETPMPKGSQVLVKINSSGVCHSDIHL
                     WDGGYEGPHGLFLKTTDRGVKYPLTPGHEIAGTIESMGEEVGGEIVGEKLFSKNDKVL
                     VFPWIGEGLCPACRVGEENLCDKPRSLGVYVDGGYAEYVLVPNYKYLVKIGDEMNIDA
                     AATLSCSALTAFGAVKNANLKPIDNVVIVGAGGLGLMAMQLAKAVTGARIIAMDLDDE
                     KLKVAKNDGGADNTINSKKEDPVKAVMEMTDNLGADAVIDFVNASKTVVSDMQFLRRR
                     ARLVLVGLFGGELKLSLITMPTKAYRLIGSYTGSIGDMVELVSLAKRGVIKPIVSEKF
                     KLDQATEALSKLKDGKIAGRGVINP"
     gene            9123..10583
                     /locus_tag="VE223_07115"
     CDS             9123..10583
                     /locus_tag="VE223_07115"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HZC21398.1"
                     /translation="MVVNLDFPYWIRFAHFINIIFITLLIRSGIEILSALPKLYFNDH
                     ATPGTEWIKFTRKKMPQNRLWISLEEEESFPSLVALPGHKNLGLGRHWHFFSIVFWIA
                     NGAAYYILLFTSNEWQRLIPTSWDIFPQAIHTALMYASFHFPPPGNPYNPIQQLSYFG
                     VVFLLGPFMIATGAAMSPAIDARFPRYPRIFRGRQVARSLHFLGMVAFVLFIIVHLTM
                     VVIERFSDNMGNIVLGHATSFGVAAGLFALFVIAVVVVNVWATGVSLRKPRLIQNALD
                     IVLVPAKWILFHKTISRQEIPKSKVSLFFRVNGYPPDTQEYKELLKNNFTNWKLDVYG
                     LVQSPLELSLSDLRMMRKEEQVTEHYCIQGWTAIGGWGGVPMRYIIEKCKPLQSARYV
                     VFRSHQYTDGDEFYEVLDLEIVKHPQTILAYEMNGEPLDIGHGAPLRLRVETQLGYKM
                     VKWLRSIEFVNDYKNIGMGQGGHREDHMYYSPRAGI"
     gene            11350..11829
                     /locus_tag="VE223_07120"
     CDS             11350..11829
                     /locus_tag="VE223_07120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21399.1"
                     /translation="MRSEADGQGISLNSLINQILKSFLEWHIYEPKVGMVPLSKPVVQ
                     ELFRKMSKEQMMDIATRVGKSEVQNAAIFMKGGRIDLDSFLSWFENRMRNSSIQMSHI
                     FDEKSRIHTYVMKHDICENWSLYFKEILQYIFNEVLGKRIDISTSYSMLTFKFKQDD"
     gene            complement(11996..13159)
                     /locus_tag="VE223_07125"
     CDS             complement(11996..13159)
                     /locus_tag="VE223_07125"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HZC21400.1"
                     /translation="MEINRNNDQISQEELPVETVLVLQGGGSLGAYECGVYKTLVKHN
                     IKFDIVSGTSIGALNAAIIAAHSYDNVKNSVKELEHFWLELAETLIPLPEQFSLLYFT
                     DEARAILASAYSAMYGNPKAFFPRWVFSSLFNYLQPFRPLPYPLFDIAPLKETLNRYV
                     DFNNLGKPNRARLIVTSTNIQTSEPVVSDSKHTNIDADRVIASAGFPFYGIAWTKKDN
                     KYLWDGALLSNTPLREVIDASPISDKKVYLVNIFPHYQKELPQDMFETWHRARDIIYT
                     DKTDNNVRLSRIISRYLSLLKEMHDLLTIKNVNLKEENDPKLKDRFMKMELEYNKLAR
                     HRGAIIRELVRIERPEKNHHFLFEDADFSIATIKKLIRQGEADTERALVTNSK"
     gene            complement(13299..13421)
                     /locus_tag="VE223_07130"
     CDS             complement(13299..13421)
                     /locus_tag="VE223_07130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21401.1"
                     /translation="MKKPKNIITGRVDRSVLNTMLTFEISKVAKSGFVIELEGN"
     gene            13717..14145
                     /locus_tag="VE223_07135"
     CDS             13717..14145
                     /locus_tag="VE223_07135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21402.1"
                     /translation="MSLRILKKHQVLVVNTAIISVLGIALLLSTIALSLPYYNSLARA
                     QTKNKTSGATNCGIGNVNTIPKIANLPPGNNTKIILKNKNIGNPNAFKAFGKEHPTTA
                     NTPASIRQLPNMPSGCNNNIAPSSAQKNNTSSSGNSSQTK"
BASE COUNT         4863 a         2974 c         2653 g         5373 t
ORIGIN      
        1 tggaagttca gcaggaaatc tgtatgaccg aaaagatgtc cacttattca tagatgatgg
       61 aaggcgattt atcagttcta ctaattctaa atttgataag atagtcataa agcttgtaga
      121 ttcttgggct gctcaactgg ctggtggcta tgcattatca gaaaactacc tttacacagt
      181 agaagcattc aagcaatatt tacaacactt gaatggagac aatggaatgc ttgtgatggt
      241 acggtggaat attgaattgc ccaggctaat gcctcttgta gttgaatcat tacgacaaga
      301 agaaacagca ggaaaaaaga gtatacagga tatcagcaag cagattttag tagtggagga
      361 tcgtcctgga ttaacttttg gatcaaacgc tcaaagaact gaatatcctg tccttgtaat
      421 agtaaaaaat agtccattta ctagctcgga acttgatttg gtaaaacaac gggtttctac
      481 aaatgatgct agtatcattg caatgcctgg tggatacgta caaccgcctt atgacaacct
      541 gctctcgtca actaaaagaa ataacaacgg tcatcctcag cagcagcaac aagagcagtc
      601 attatctcaa gtaagttatg atctacaaaa aaagactcct tttggattaa aaccacccac
      661 agatgactct cctttctatt ttgcaaaaga gcaaatccca aagcagttgg tgttgcttat
      721 agaaacgatt ctgggagtat ctgcagcact ggccttactt ttagtgtact attcaagagt
      781 aaataaaatt cgtttaactg catcatcaag attccatctt gtttttgtaa tattgatagg
      841 actaggcttt atatttttgg aaataacctt tattcaaaaa ttcctattgc tgctcggaac
      901 tcctataatg gcattaacag ttatactgtt ttcaatcttg ttgagtagcg gagtaggtgc
      961 atatttaagt ggaaggcttt tcaagaagaa tccatacaaa gcagtagtga tatctatacc
     1021 acttctagct gcaatactgc tagcttatta cgtctttcta caggacatta taagcttcag
     1081 tatagttttt cagttatatc agaggattat gttgacgttt gcgcttttgt cacctgccgg
     1141 tcttctgatg ggatttcagt ttccatccat tactagaatg gcttcttctt ccaaccagga
     1201 tatcaccttg ctatggggag tgaatgtgat tgcatccgta ataggaactg tattaaccac
     1261 cacatcatcc atgattatag gctttaatgg taatttgctg gttggattag gactatattt
     1321 gggtgcatta gcttctggca tagcggctac aagaataaca caaaaagtaa gtggcactca
     1381 agtcattaaa taaatttgta taaatcggaa gatatacaac gcatccattg gacagagtgt
     1441 ttttcattgg tgttagacat agtgaagaag atgatgataa acatatgttt tttgtgtcat
     1501 atagagtcag aattatctgg gatacaaaca atacgtcttc atccttgttt cacatctgct
     1561 ttcatattta tatgcatatt cgttagtcat actcttcttc aaagccctat tgaaatagcg
     1621 tagagtgcta tgaagtggtc ggggctgttg tttagagatg gcatgtgtta gcttcgtatg
     1681 tacaacactt aaattatttc ccggatcgct tcctgtggta gtacagcacc cgatagagtg
     1741 ccactatggt tgccgcattc agcatctttc catacaagag tagattgtcc accttttctg
     1801 caggcacaaa ccacggcctc gatatctttt ccatgttgcc cagattcgcc tttccggtcc
     1861 ttttcaggcc gtacgctgca aatatgtggc cggagtgctc aaacatcctt cagaatttct
     1921 cattattagg cgatttgtta tagatattat cttttgttgt tatagtatat tgttttatta
     1981 taatattatc atcatgttta aagataacag agtaaatcat aagtgagtgt aagatggaaa
     2041 actatcaaaa acatagacca ctaggagtta caataattgc aatattgacc gtaattggtg
     2101 gcatagcatt tattgctatt ggaacggttc tcttaattgt tggaataggt tttgtactta
     2161 tagcaatatc tatagcttat tttgttatgg cctatggtct atggaatggc aaaagatggg
     2221 cttggacgat aacccttata ctatcaggaa tagggatcat actaggtatt gcttcaattg
     2281 ctgttgggaa tatcggagca gtatttcaca taatcctaaa tgccgtgatt atctattacc
     2341 tgtacagacc taatgtaaaa gcattttttg gtaaatcgaa tttatgatga tgaccataat
     2401 gatatctggc aatttatagc atctgaagaa gaggtctatc aatcgacata cagtatgtac
     2461 caatctacat aaaactctac atattatttt gtataccaga ttaattttaa taagcgttat
     2521 taatgtaatg aaaattactt ttgtatttca agccttgacc attttcattt ttgggaagta
     2581 tggcgtattt ggatttaagt gttttactct atccatcata tcaattatga ctcggatact
     2641 ttaataacag ttattctaaa tgttgatcat tatgttccta attgtagtga catcatatac
     2701 ctgctactta tagtgttaga tgtctataag taagaaagta tttttatatt taattattct
     2761 ttgtccgtta ggtcatctag tatttttcaa agcaaatatt ttccacatgt ctttactgtg
     2821 aaataataca agcctgcaca aatatctaaa gcatgtagca acaaaatcaa tgggtgatgg
     2881 aaattatcaa accaaaagct tcagaataat tgagtctgca acaacgaaat caactattct
     2941 ctgttccatc tttgattgga actgttgatc gaactaaatc cgcatatttg ctatttttga
     3001 tttgaatcta tcccgtgttg cttgcgctgc agctattgaa ctttcttcac tcgtcagcaa
     3061 cggaattaat tcttggtaag gttcttgctc tcatctttgc acctccatac aatacttcac
     3121 cgttgacaca gatatcatta tcatattttg aaaggcgaaa aacaagaaga aagatattat
     3181 atctagattt atccactaca attatttctt tgcgtaatcc tttaatcctg taaagtcaat
     3241 tgcgataaca ggctcatttc cgataaccca tgcattatgc ccaggaggaa ttaccatagc
     3301 atcaccagga ccgaactcat cttctgttcc gtcgtccatt acaactctca ttcgtccgga
     3361 gaccatatat tgagtatgtg gagcttggca gctattggtt ttagatattg gtttgacaca
     3421 tttttcccag ctccatcctg gctcaagtgt tcctcgtcca atagttatat caccaagatt
     3481 tgcaagttca acttttcctt tgtcaaatga tcgcgtctca tctggagaat ccaaattttt
     3541 cttctgcatt tttgccatcc ttatcaaata tagtaattgt tactttattt ataagaattt
     3601 ctacacaact atctctgatt aatttaaaga tttaaacaat cagacaacaa cagctttgat
     3661 tataatagca atcatcatga gtagagagtt gacagattat catatcttga taaatccaat
     3721 aataacaaca actatcggga cattagcaat actcaaaaaa ggctaactca ttaaaatgaa
     3781 cataccttat ccagaatcac atttaaccgt aattgcgaag acatttgttg caaagatgca
     3841 gatacaaaga aagcgacata tacgtttata gattcttatc acaatctttg tcttataaaa
     3901 aggacatagt attagcagaa atagaagatc tgaacgcctt ttaaaatata tttctgataa
     3961 agatgaaggc aagaatggac aatattctta tccagcttct atttcttggt accttttcat
     4021 caatttcttc gttgtctttt attaagtgtt attagccttc acttgggatt ccttgttgtt
     4081 actgcttttc gtttgctctt ctctctcttt atgctttcct tctccctcct ccttttctcg
     4141 ctgttcctct cttgtaaata aggtctgttt cttaatcata gaaacatctg gtttgtatat
     4201 caaatccatt gtccaatcac tcattacttt taacttcttc tttattgttg gaagattgct
     4261 aagatagtat gtacgccata tccaccatgc tgcaaagcca tgtactttaa atccaaacag
     4321 cgtagcaaca ccagttcttt ttccgatttc agccatcatt ccttttgttt tataatcgaa
     4381 ttttaccttc ttattctctt tgccttcaat gtcacatatg atgttctttg cagctacctt
     4441 tgcctccctt acagcatgct gtgctgttgg aggatatggt tttcctgtat gagggtttgt
     4501 tatagatgca caatcaccaa gtgagtaaac ttctccttcg tgtcctaaaa cttccaggta
     4561 attgttgact aacacagcat gtcttttatc atgttcacat gagaggctag caacaaaatc
     4621 ggtaggcgtt acacctgcag cccaaacaat cgtataacat ggtatgacca taccgtcgtc
     4681 taatttagca ctatttggag tagcccctac cacatgtcta ctcattataa attctacacc
     4741 tttttgtttt agtctttgca atgcccactc tcctaatttc tcatctactt gttctagtat
     4801 tttatcagta gcgctaacaa gaatgactct aacatcagac atgtagatat ctttgtagta
     4861 tgtcttaata gtttctctta caaagtcgtt taattcgcct actgtctcaa caccattgaa
     4921 gcctcctcca actacaataa atgttaataa actttttgtc aaatgtctat tttccttttc
     4981 tagatttgct tgttctagta cgcttaatat gtgatttcta atagcaattg catcgtctat
     5041 gcttttcata gtaaatgagt gcttttctac ctctgtcata ccaaagaatc tagtttcact
     5101 tcctaatgcg ataactaaat aatcatattt taatgtgtgt tgatcccatg cagttggttc
     5161 agactgtttg ccaattggat gccgtagaat gacctgttta tttttaaagt ctattgattc
     5221 aatattggcc tcataaaaat tagccttatt acaaaaagat ctgataggcg ttacgatatg
     5281 tcttgtctct atcatacctg atgctacctc tggaagcatg ggtgtaaaga gaataaagtt
     5341 gtctctgctt accaatgtaa tttctacttt cttatcattt ttgaacttct tttgtaatgt
     5401 ttttaacacc tctattcctg caaaaccact tcccaagatt acgatgtgtt tagaggagcc
     5461 atctaaagaa aaggaaggag gatttttttt cttcaaaata tgtaattcac cgccattatt
     5521 gtcatatgaa gtggtagcag tagaaaggat gttttctgtc cttgcttctc tactgtgttt
     5581 gttataatta tctttatcat tgtcttctca acctctctct tttccttttc tcttctactc
     5641 cacatggtga taacccacca acttgtcata aaatctaact gatttaatat tagcaaactc
     5701 tagcatacca tactttgaaa gctctctgcc aaagccactt ttctttactc ctccgaaggg
     5761 aactcgtgga tcagaggcaa ctatgttatt gacggtcact attccagatt gtattgacat
     5821 agacaacttc tccgctttat caagatcttg tgtccatatg ctagcaccaa ggccatattg
     5881 agtatcattt gcaagtttta tagcttcagt ttcgttatct accgtaatta tgggtgcaac
     5941 cggaccgaag acctcttctt gagctatgcg cattttggga gatacatcct taatgattgt
     6001 tggtttatag aaatacccct ttctatcgac cttttctcca cctataagca actgtgcacc
     6061 atccttgatg gattctttga ctattgattc gatattctct aagcgagtgc tatttactag
     6121 cggacccata tctgtgtcat ccgatagcgg atctccaact cttaactttt cagatttctg
     6181 tacgaatttc tctataaact cccctgctac cttcttggta ataataaatc gctttgatgc
     6241 tatgcaactt tgtccacaat ttatgaatct tccttttact gccccagtag atgctttatc
     6301 tatatcagca tcatcacaga ctatgaaagg atcgctccca ccaagttcaa gcacacattt
     6361 ttttatttga gatgctgctc tttgtgctac ttttcctcct acttgaacac ttcccgtaaa
     6421 tgttacagca ttaatatcat ttgaatcaat cagcgtctct gcaatactag aatcaccgac
     6481 caaagtctga aacgctccat ctggtagtcc aatattgttg aaagcattct ctatctcaat
     6541 tccacattgc atagtggcac tggctggttt tagtacgaca gtgttaccaa ctatcaagga
     6601 aggagctgca aatctgagag cctgccagta aggaaagttc catggcataa tactacctat
     6661 tactccgata ggctgaaatt ttatcacagt tttcctagca tctgtgttga ccacttcgtc
     6721 ttttaaaaag atctcaccat tatcagcaaa atattccatc acccaggcac atttttcaac
     6781 ttcagatctg gcttctttga ttgcctttcc catttcattt gttgcagtct tagcaagatt
     6841 ctccttattc tttcgtaatt catttgcaaa gtcatgaata aagtctattc ttttattgat
     6901 gtcctttttc cattcatcga atgcatttcg tgccttcctt attatgccat ctatctgctc
     6961 tttagtcatt atttcatatt gattgataac ctcttctgtt gcaggattta ttgtctttaa
     7021 ttttttgttt tctccttttt ctcctgctac tgctacttct accatttctt tcaaggattt
     7081 attacacctc tgcctgctat tttaccatct tttagttttg acaatgcttc tgtagcttgg
     7141 tctaatttga acttctcaga aactattggt tttataactc ctctttttgc tagtgatact
     7201 aattctacca tgtcacctat gcttccagta tatgaaccaa ttaatctgta agcttttgtt
     7261 ggcattgtaa tcaggcttaa tttcaattcg ccaccaaaga gtcctaccaa gactaacctt
     7321 gctcttcttc taagaaattg catgtcagat actacagtct tcgacgcatt gacaaaatca
     7381 atcacggcat ctgcacccaa attgtcagtc atttccataa ctgctttgac tggatcttct
     7441 tttttagaat ttatagtgtt atctgcacca ccgtcatttt ttgcaacttt taatttttca
     7501 tcatctaaat ccattgcaat tatcctagcg ccagtaactg cttttgctaa ctgcatagcc
     7561 atcaatccca gccctcctgc accaacaatt acgacgttat caattggctt tagattggcg
     7621 ttttttactg ctccaaatgc tgtaagtgct gaacatgata atgttgcagc tgcatcaata
     7681 ttcatttcat cacctatttt tactagatac ttgtaatttg gtactaatac atattctgca
     7741 taaccgccgt cgacatagac tcctaatgat ctaggcttat cgcataggtt ctcttcacca
     7801 actctgcaag caggacacaa tccttcacct atccaaggaa agacaaggac tttatcattt
     7861 ttgctaaata atttttctcc tactatttct cctcctacct cctctcccat actttctata
     7921 gttccagcga tctcgtgacc cggagttagc ggatacttta cccctctatc agtagttttt
     7981 aaaaatagcc catgtggacc ctcatagcct ccgtcccata gatgaatatc gctatgacaa
     8041 acacccgatg aattaatctt cacgagaacc tgtgaaccct taggcattgg agtttcaagc
     8101 tcttgtactt ccaaagattg ttttggttta acgattcttg cggctttcat atatttatag
     8161 tataacatta atgaataaaa gatcggagca ccgaaatgca atcatttgaa gctatctgca
     8221 aacattttat agattagatt atcgctacga aacatggaat tgaaatttaa tctaattgct
     8281 tcacgcattt atatatctgc tcttagatta cttggtcctt ttgaaattct ggataagaaa
     8341 aagagaaaag ataccttaac ttaacacaac agattacttg actcaaaaac taataaatga
     8401 actttgctta tatattgaag tcttttcctc gtaattgcaa ttacaactat tattatccct
     8461 tttgcttcca gctactgctg attgctctcg tagtctacaa gattatctct cgtctggatt
     8521 cattgaaatt tcatttcgag ataaatatct tttcgtttaa ctctttgact atattagaag
     8581 agtaagtata gatggatacg ttataaatgc agatagctga tcttttttat aaaaagtcaa
     8641 tttagaaaga agagtctatc aatatttagg tctattacgc acatgatcgt actagtagac
     8701 aagctgcaga gaaagttgct agataaatta cttctagctc ttgctattat agatttgctt
     8761 gctaatttgt acagatatac aaaaaggtga acatgtaatc tttagcaatt atatagatct
     8821 agacagatca tgtgatagta taggctatcg attctattgc aataggacaa aaaaagacga
     8881 catacatccc gtgtaacggc ctgcccaatg tatggcataa aactagaggc ataatgtata
     8941 tagataagat agaaatcaag atactaaatg tggttacaaa acatcacttg actcttttga
     9001 aggagttata tgagttcgta agcagctcta aactttacga aaatactaag ataaggagag
     9061 caaacgctga aaatacccca atagaaaaaa aggatttatg actatggagc aagacattta
     9121 atttggtagt taatttagat tttccttatt ggattcgatt tgcacatttt ataaatataa
     9181 tatttatcac attattaatt cggagtggca tagagatact gagcgcactt ccaaagctgt
     9241 actttaatga tcatgcaacg cctggaactg agtggataaa gtttactaga aagaaaatgc
     9301 cacaaaatag gctctggatc tcgctagaag aagaagagtc ttttccatca ttagttgctt
     9361 taccaggaca caaaaatctc ggcctgggaa gacattggca tttcttttct atagtttttt
     9421 ggatagccaa cggggcagca tattatatcc tactttttac aagtaacgaa tggcaacgcc
     9481 ttattccaac ctcctgggat atttttccac aagcaattca tacagcattg atgtatgcta
     9541 gctttcactt tcctcccccc ggaaaccctt ataatccaat acagcaactt tcgtattttg
     9601 gtgttgtatt tttacttggt ccttttatga ttgctacagg cgctgcaatg tcgccggcta
     9661 ttgacgctag attccctagg tatcccagaa ttttcagagg caggcaagtc gctaggagtc
     9721 tacatttcct tggaatggtt gcctttgttt tgtttattat tgttcatcta accatggtcg
     9781 taatagaacg cttttcagat aatatgggaa acatagtatt aggtcatgca accagttttg
     9841 gagttgcagc tggtttattt gcactctttg ttatagcagt tgtagttgtt aatgtatggg
     9901 ctacaggagt ttctcttcgg aagccaaggc taattcagaa tgctcttgat atagtattag
     9961 tgccagcgaa gtggatttta ttccataaaa ctatatccag acaagaaatt cccaaatcaa
    10021 aggtttcgct atttttccgg gtaaacggct acccccctga cactcaagaa tacaaagagc
    10081 ttttgaaaaa taactttacc aattggaaac tcgacgtata tggattagtt caaagccctc
    10141 tggaactttc actttctgac ttgcgcatga tgcgtaaaga agagcaagtt accgaacatt
    10201 attgtataca aggatggact gccataggag gatggggagg tgtaccaatg agatatatca
    10261 ttgagaagtg caaaccactt cagtcggcgc gttacgtcgt gtttcgttca caccaatata
    10321 cagatggaga tgaattctat gaggtattag atttggagat tgtaaaacac cctcaaacaa
    10381 tcttggctta tgagatgaat ggtgaaccgc ttgatattgg acacggtgca ccattacgct
    10441 tgagagttga aacacagcta ggttacaaaa tggtcaaatg gctcagatca attgaatttg
    10501 tcaatgatta caagaatatc ggaatgggac aaggtggtca tcgtgaggat catatgtatt
    10561 atagtccgcg tgcagggatt taatatacag attaagatat gtgttgaaga tgaaaaatat
    10621 caaccatggt tgtgattaac ttttaatgca caggacgtct acaattaaaa caattataat
    10681 aacaattaaa tacaaatgcc tgcagatgat gctacatctt tttactatcc tatgttacca
    10741 gaatactaac cattacaaat actcctaaaa atacatgctt caattgtgat ggatataaat
    10801 acgcaaggta atgagggtaa gtgtgtgcct gaaataacag tagcagtatc atttatagct
    10861 gctaatctcg ttggacccta actaaaacaa gacagggcag cacaatcaca tgacagaatc
    10921 actactacca ctaagttcaa aggataacct tatcaataaa cgtccacaca cgaaatggtt
    10981 ttcttattgg cagaagtcat acatacattc taaaacacga cgcaggagaa aagtattcgt
    11041 tatattacaa gacagtttta gagttaatct tttaggaagc tttgcaaaaa aattattaac
    11101 atcctaacat caaataatgc gacattagta tttgaatttg aaaataaacc ttgcttttat
    11161 tctatatgag gaaaatatac atagatttat taagaaagat tctctaacaa atatcaaatg
    11221 cagataagtt tgcaaagcag gaggtaaaaa ataactatta cccgaagcgg cattagtaca
    11281 gaaaaagaag ccaatgcgag caagactacc tctctaacgt tccgtttaga tgaagatagt
    11341 gtgaaaaggt tgcgctctga agctgatggt caaggaatca gccttaattc ccttattaac
    11401 caaatcctaa agagcttttt agaatggcac atctatgagc ccaaggttgg aatggtcccg
    11461 ctttctaaac ctgtagtaca agagcttttt agaaaaatga gcaaagaaca gatgatggac
    11521 atagcaacgc gtgttggtaa gagtgaagtg caaaatgctg ctatatttat gaagggagga
    11581 aggatagatt tggattcatt tttatcttgg tttgagaata ggatgaggaa ttcatctata
    11641 caaatgagtc atatatttga cgaaaaaagc agaattcata cttacgtcat gaagcatgat
    11701 atctgcgaaa attggtccct gtattttaag gaaatattac aatatatctt caatgaagtt
    11761 ttaggaaaga gaatagacat cagcacatca tattcaatgt tgacatttaa attcaaacaa
    11821 gatgattaga tgaaatatgt attgttaaat gtcttgttat tatatataca ctagcagcta
    11881 aacaaagcat ataggaattt cagtcatcgg agtttcagtc atagtaaatc aaagacattt
    11941 tattgagatc tcaagtgcat tttatatttg gtaatatgta aaacaacaag ttctatcatt
    12001 tactatttgt aaccaaagct ctttctgtat cagcttctcc ttgccttatc aatttcttta
    12061 tggtggcaat tgaaaaatca gcatcctcaa aaaggaaatg atgatttttt tctggtcttt
    12121 ctatgcgaac tagctccctt attattgcgc cccgatgacg tgcaagctta ttgtattcaa
    12181 gttccatttt cataaatcta tcctttaatt ttggatcatt ctcttctttg agattgacat
    12241 tcttgatcgt caataaatca tgcatttcct ttaaaagtga taaatatctt gatataatcc
    12301 ttgacaatct aacattatta tcggttttat cagtgtaaat tatgtctctg gctctatgcc
    12361 acgtttcaaa catgtcttgt ggaagctctt tttgataatg aggaaaaata ttaactaagt
    12421 agaccttttt gtctgagata ggtgatgcat ctatgacttc acgtagggga gtattactaa
    12481 gtagagcacc atcccacaaa tatttattat cctttttcgt ccatgcaatg ccatagaaag
    12541 gaaaaccagc gcttgcaata acacgatctg catcaatatt ggtatgtttg ctatctgata
    12601 ctactggttc acttgtttgt atgtttgtag aagttacaat taatctggct ctatttggtt
    12661 ttcccaagtt gttaaaatca acatacctgt tcagtgtttc cttaagaggc gctatatcaa
    12721 aaagtggata tggcaatggt ctgaatggtt ggaggtaatt gaaaagactc gagaaaaccc
    12781 atcttggaaa aaaggcctta ggattcccat acatagcaga atacgcggat gctaaaatgg
    12841 ctcttgcctc atctgtgaaa tacaataatg aaaattgttc tggtaacggt atgagagttt
    12901 ctgcgagttc taaccaaaaa tgttcaagtt cctttacaga attttttaca ttatcataac
    12961 tatgagcagc tattattgct gcgttaagag ctccaattga ggtgccagac acgatatcaa
    13021 attttatatt gtgttttaca agagttttat acactccgca ttcatatgca ccaagcgaac
    13081 ctccaccttg cagtacgaga acggtttcca caggcaattc ttcttgactt atttggtcat
    13141 tgtttctatt gatttccatt gctatttgct attatatcat caatttgttt attaaaggtg
    13201 aatagacact ttgaattcaa ccatatcctt gggagcacat gatgaacttg tagatgaaac
    13261 cagacaagca tttccaaatg ctcttcagaa tatacatttt aatttccttc caactcaata
    13321 acaaaacctg atttggccac tttgcttatc tcaaatgtca acattgtatt taatacactg
    13381 cgatccactc tgcctgtaat aatatttttt ggttttttca tacacggatg cactctttaa
    13441 atgcaagaag attgtcattt aaaaaagaat acttgaagtt ggtagcgtta ccccgaaatg
    13501 tgtgatatag catttgctaa taatgctgat ggatagatca tgactcgtag atcctttaca
    13561 accacgcttg ctgttaaatt atcaagatag gcaagaatct ataatgacaa taggtacaga
    13621 aaaatattgt ttaatcttat gatctgtttg tgaaatcatt agtttcccta ttttttttct
    13681 aaaaccgtta agttcaatca ttaaaagtct aatttaatga gtttaagaat tctaaagaaa
    13741 catcaggtct tggttgtaaa caccgctatt atttcggtac taggaatagc acttttactt
    13801 tcgacaatag cactatcgtt gccatattac aactcactag caagagcaca aacaaaaaat
    13861 aagacttcgg gagctaccaa ttgtggcatt ggaaacgtta ataccattcc aaagattgca
    13921 aatcttccgc ccggaaataa cacaaaaatt attttaaaaa ataaaaatat tggtaaccca
    13981 aatgctttta aggcctttgg aaaggaacat cctactacag ctaatacacc agcatctata
    14041 agacaactgc caaatatgcc ttctggctgt aataacaata tagcaccatc ttctgcacag
    14101 aaaaataaca cttctagctc tgggaactcg agtcaaacaa agtgatataa ctgtaaataa
    14161 taataataat aataataata acaataataa taaccagcac taacaataat gttagaaagt
    14221 tcctagagct ttcacttttt tatttttgtt tttagatata gcaaaagatc ctatcaactc
    14281 tggaaacaac ctcatgtaac aaaatcacaa ttataattcg aactgactag atattgtcag
    14341 tttatttatc aataatcttt tatcaagaac gtagttagtt taggaaaaca gcttgctaat
    14401 ctgattattt atttgcagaa aatgtatacc tttgtcggtt attctaaaaa tttgatcttg
    14461 actattatat tctattagtt ccttctgttg caagagtgac aaatatgctt cgaagtatac
    14521 attagataga ttagttttat gcatgatgtc tgtttgtttt acccaacggt cattagtatt
    14581 atttttggta ctagcattag cggctgcttg gaggattgaa ataattatct tgtttctact
    14641 tctatactcc attgtaatat atgatgatag ataatagcaa ataaaaacat gtcattgcca
    14701 taacttaaca tcaagtctat gtgaatttgc tttgcaaata cattgacctt attgatgcat
    14761 tatgtcatca tctttgacca taccataacg ttactgtaat gataaccatt cgccttcttt
    14821 acatacgtat aatacatatt atatttggat gctaaaaata cgtacacaac tttatgatct
    14881 gtagtgatat cagaaattag cgtttgattc ttgtatgaga tacatgatat gtgttatgga
    14941 ataggatata tgaaggaaga acaggacagt ctttccaaag attgagtcat tatatcaagt
    15001 tttgtagtag tccaccaatc tagtactcgt actcaaagat caggaaagta ataatttatt
    15061 aatttctcgt tgcaaaatat actgtcccct ttcacatttg tccagttaaa agtaatattt
    15121 tttgaaatta atctgccata caaagtaata tgtagaatgg ggcagctttc tgatgattgg
    15181 ataaagtgtt actatcattt ggaatggtaa tcctgaccat atacatatca tatacatcat
    15241 gtggagtcta taagcataga acaaagtcaa agattttccc attttctgtg gtgttggcac
    15301 tagctacttt gccggttttc ttgcctacta ctcataaatg tgatcatcta caagcgtgaa
    15361 gaattaagat cttcacccat cattgacttt actgggtatc gccataacga aactactgtt
    15421 actgtggcaa tacagggtag tttgttgagt cataaacgac catgatcttt atgaaatttt
    15481 aggctatagt ttcttattta tgatttatgt ctacactgtt gagaaaatca gatttttgtc
    15541 gaattggtat atcctctcac acatgtttcc gtgaatcaat ggagaaattg gatcttgtat
    15601 acctcagctg aagatattgt aatacaagat cctgcaagat tctagaagcc aataactgct
    15661 acaagtcgag catatctaca agaccgttgt tttctaaaca aaagtgaata aaaaatcaat
    15721 gtactgttct tgttattttt tctttctcat cttcatcgat ctagtgatat tactatttta
    15781 aataatacta atgagaagta ggataaggac attgacattg aggggtgata tgtgtaagga
    15841 ctcttgttgt gatgtcgatg gtg
//
LOCUS       DASQSJ010000361         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_299919, whole genome shotgun sequence.
ACCESSION   DASQSJ010000361 DASQSJ010000000
VERSION     DASQSJ010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299919"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VE223_07140"
     CDS             <1..357
                     /locus_tag="VE223_07140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21403.1"
                     /translation="IAGAKIDYFHLSIEDYGAPSLKALDNAVNQTSRQRQWKSVQWWY
                     LQVVNEGLELYLLLIKKRTVLNAYQSITRLRKIRGESIQSKDRENSLFDYENISGVKD
                     HHHHQLKIIIIPTLND"
     gene            928..1110
                     /locus_tag="VE223_07145"
     CDS             928..1110
                     /locus_tag="VE223_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21404.1"
                     /translation="MIRIGRGYSPSELKEAGLANIAVVTTCQILIEAMSNTFCTGSAH
                     LAWNLSLDCLTIVYAE"
     gene            1234..>2043
                     /locus_tag="VE223_07150"
     CDS             1234..>2043
                     /locus_tag="VE223_07150"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HZC21405.1"
                     /translation="MSKNNATILVIVLLLSAQLPLLVITFGNNNGRGIILAHAKKSLS
                     PVHSTMTQQHQQQQKQQQNIVQSSSSHHIMKTRGETKIPLPSSSSSTTAAQRLPILAS
                     NITGSNNIAKVVMINFDDGWKGQFLYAKPILDQYGFKASFFIPCAKMQKDQKWMTWQQ
                     ITDLKNDGMDIESHTMTHAHLPTFLSVPSRLAYEIGGAKQCLANHGFNTTIFGYPLNL
                     GSNISSIVNLVANSYSFARTGTYPLMFLNCNGFEGHPPQHDCSAYAKGMLTF"
BASE COUNT          729 a          357 c          363 g          594 t
ORIGIN      
        1 atagctggag caaagattga ttattttcat ttaagcatag aagactatgg agcaccttcc
       61 ttaaaagcat tagacaatgc agtcaatcag acgagcaggc aaagacaatg gaaaagcgtg
      121 caatggtggt atcttcaggt ggtaaatgaa ggactggaac tatatttgct gcttatcaag
      181 aaaagaactg ttttgaatgc gtatcaatct attacgagac tgaggaagat tagaggagag
      241 tcaatccaat caaaagatcg agagaatagt ctttttgatt atgagaatat ctcaggagtg
      301 aaagaccacc accaccatca actgaaaata ataataatac cgacattaaa tgattagtga
      361 tgcttttagc tctaaagcta tttgaagctc aaatggttat tatactttaa ttatatttaa
      421 ctgcgtttca taacatacaa taatccaaaa tttggaataa aacttcaata tcctgtaggt
      481 tggccgaaag agaaacaact gatcgattta caaacagtgt agtattcctt gtactcacta
      541 gcccaataaa atatgcagaa aagctttctg tagctttttt aaatggagcc tggcaagtca
      601 cctaatacag tagtaaacga tctgattgat tttaacaaac atgagaatct tacttatcga
      661 attagagtaa agttgttatt aatggcatta atgcctataa atttgtaaat acttattctg
      721 atccaaaatt tggaaacgta aagagctcgc aaattgagat cttgagaaac aaacaatatg
      781 agttcctttt cacctcagag cctgagaagt atgataaatt attaccgact attcagaaaa
      841 gcagattgat tcattccaaa taactaaatg acttccaaga ttttgatttt taatttcttg
      901 ttcacactta agtagccaag tgtagaattg atcagaatcg gtaggggata ttcaccaagt
      961 gagctaaaag aagcaggact tgccaatatt gctgtagtaa caacttgtca aatactgata
     1021 gaggcaatga gtaacacatt ttgtaccgga tcagcacatc ttgcatggaa cttgtctctc
     1081 gactgtctaa ccattgttta tgcagagtga cgacgtgaat taagtctaaa atggaagtac
     1141 agtaagaatt cagtagtaag caggcagcaa cagtgagaag tagggtatgt ttattaactt
     1201 aaattcaaat attattgttc tcgatgaatt gatatgtcta aaaataatgc tacaatctta
     1261 gtaattgtgt tgttactatc tgcacaattg ccgctattag ttattacttt tggcaataat
     1321 aacggtcgtg gtatcatttt agcacatgcc aagaaatctt tgtccccagt acattcgaca
     1381 atgacacagc aacatcagca acaacaaaaa caacaacaaa acattgtaca gtcatcatca
     1441 tctcatcaca taatgaaaac aagaggagaa acaaaaattc cattaccatc gtcatcatca
     1501 tcaacaacag cagcacaacg attaccaatt ctagcaagca acattactgg aagcaataat
     1561 attgcaaagg tagttatgat aaattttgat gatggatgga aaggtcagtt cttgtatgca
     1621 aaaccaatcc tagatcaata tgggtttaag gcttctttct ttataccctg tgcaaagatg
     1681 caaaaagatc aaaaatggat gacatggcag cagataacag atttgaagaa tgatggaatg
     1741 gatattgaat cacatacaat gacccatgca cacctaccaa cattcctatc agtaccatca
     1801 agattagcct atgagatagg aggtgcaaaa caatgtcttg ctaatcatgg ctttaacacc
     1861 actatatttg gatatcctct taacctaggt tctaatatct caagcattgt aaatctagtt
     1921 gccaactcct atagttttgc aagaactggg acctatccac ttatgttctt aaattgtaat
     1981 ggatttgaag gtcatcctcc tcagcatgat tgcagcgcgt acgctaaagg tatgctaacc
     2041 ttt
//
LOCUS       DASQSJ010000362         2260 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_261848, whole genome shotgun sequence.
ACCESSION   DASQSJ010000362 DASQSJ010000000
VERSION     DASQSJ010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_261848"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            443..676
                     /locus_tag="VE223_07155"
     CDS             443..676
                     /locus_tag="VE223_07155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21406.1"
                     /translation="MQKILILAPRALACKLEEKLRHKFDIETALPYEESLCQIRAKIR
                     RSWITICSFARDENLKDILTMFEVNYEIKKGYR"
     gene            750..1667
                     /locus_tag="VE223_07160"
     CDS             750..1667
                     /locus_tag="VE223_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HZC21407.1"
                     /translation="MRSSLTCSICYNDSTLITDQESGEIVCSSCGQVISDTIQQSLEG
                     ATTWGSSKIGNDNNNRAVGMPISAARHDMGLATLIGKANKDASGRMLDAAMRTTMERL
                     RTWDYRTQIHTPTDRNLKSAFSQLDNLKDKLALPNSAVEKAAYIYRKAQERGMVRGRT
                     IRSVLAATSYIVCREMGISRTLKDIAMAADVRPKDLSRTYRLLVFELDLKVPIIDPMK
                     AIARIANKAELKETTKRQAINIMYEVTKRELSAGKDPMGLAASVLYLASHMTRDYTTQ
                     IDIAEAAAVTEVTLRNRSKDLRDKLKLLN"
     gene            1871..2248
                     /locus_tag="VE223_07165"
     CDS             1871..2248
                     /locus_tag="VE223_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21408.1"
                     /translation="MVRIVYSPIQEIKIYEMAEYQFSDFIKLMTDNIPPGNISPAVKW
                     CDGIIFMSTGLPSTDDVVKAQMNGIIHYAWFAFADMPIYKQSVETSSKVILPIIDVSN
                     NAINRELIRWFRTNRNTELLNTK"
BASE COUNT          823 a          380 c          453 g          604 t
ORIGIN      
        1 gaggagaata aaacaagaac gaggagaagg agtagaatgg gcagcagcag tatggggatc
       61 gaggggtcaa tactctaata gggatgcaga tgcatatgcc attaggaagg tcagagagtg
      121 gagaaagaag cataatattc ccctttactg ccctgtttac tagatagatg caaaggagtt
      181 acgtcttcta tatcgaaaaa gtcattgttg aagaagtcaa gatatttttt ctaagcaatt
      241 gaaaaagaag gttaacgaat atagcctacg aggtttactg ttcagcatga gcagataaat
      301 tggtctgtat gctggctgtt gcgatacaga tttattagcc ataacactta attgcttaat
      361 cctaaagaag aaataataat tagctatata tctatctatt ctatttatct ctatatagag
      421 aaatgacatt accaattcca caatgcaaaa gattctgata ttggctccga gagcgcttgc
      481 ttgcaaatta gaagaaaaac taaggcataa atttgacata gaaacagcat taccatatga
      541 agagtcccta tgtcaaatac gagccaaaat aagaagaagt tggattacaa tatgtagctt
      601 tgctagggac gaaaatctga aggacattct tacaatgttt gaagtaaatt acgaaataaa
      661 aaaaggatat aggtaatttt aaaaaagatt tactactagt tatactagaa ctatttaaat
      721 agacatactg caaaaaactt atccctaata tgagatcctc tttaacttgt tctatttgtt
      781 ataatgattc aacgctaatt acagatcagg agtcaggaga gattgtttgc agtagttgtg
      841 gtcaagtaat ctcggacaca atccaacaaa gcctggaagg tgccacgacc tggggctcct
      901 ctaaaatagg gaatgataat aataacagag cagtaggaat gccgatatct gccgcaagac
      961 acgatatggg acttgcgaca ttaattggga aggccaataa agatgcaagt ggacggatgc
     1021 tagatgcagc aatgcgtact accatggaaa ggttaaggac atgggattat aggacacaga
     1081 ttcacacccc tactgacagg aatttaaaga gtgcttttag ccaacttgac aacctaaaag
     1141 ataaacttgc attaccaaat tctgcagtag aaaaagctgc ttatatttat agaaaggctc
     1201 aggaaagagg aatggtacgc ggtagaacca tacgctcagt acttgcagcc acgtcataca
     1261 ttgtgtgcag agaaatggga atctcaagaa ccctaaaaga tatagcgatg gcagcagatg
     1321 ttagacccaa agacctttct cgcacttata ggctgttagt ttttgaactg gaccttaaag
     1381 ttccaataat tgatccgatg aaagctattg ccagaattgc aaacaaagca gagttaaagg
     1441 agactacaaa gcgacaagca attaatatca tgtacgaagt aaccaaaaga gaactatccg
     1501 caggcaagga tcctatggga ttagcagctt cagtgcttta cctagctagc catatgacaa
     1561 gagattatac gactcagata gacatagcag aggcagcagc agtaacggaa gtaacactaa
     1621 gaaatagatc aaaggattta agagataaat taaaactttt gaactagagc aagaaattga
     1681 ctactatttt tagtaattaa aaaggtctcc atgatggatg tcaaacgtca ggaattaaga
     1741 atgcaacgag ttttttcatc ccaaaaccgg aaatgattta atccagacct ttaagccccc
     1801 gtttaattgg tagcccgatt tttaatctat agctgataaa ttatatatct cataactgat
     1861 ttgcagtcct atggtgagaa tagtctattc gccaatccaa gaaattaaaa tttatgagat
     1921 ggcagaatat caattttctg attttatcaa attaatgact gacaatatcc ctccaggcaa
     1981 catatcacca gctgtaaaat ggtgcgatgg aataattttt atgagtaccg gtcttccctc
     2041 aacagatgac gtcgtcaaag ctcagatgaa tggaattatc cattatgcgt ggtttgcgtt
     2101 tgccgatatg ccaatttaca agcaatccgt tgaaacatcc tcaaaagtaa tattacccat
     2161 aatagatgtt agtaataacg ctattaatag agaattgata cgttggtttc gaacgaatag
     2221 aaatacggaa ttgttaaaca caaaataatc caatttataa
//
LOCUS       DASQSJ010000363         6553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_580956, whole genome shotgun sequence.
ACCESSION   DASQSJ010000363 DASQSJ010000000
VERSION     DASQSJ010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6553
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580956"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..485
                     /locus_tag="VE223_07170"
     CDS             <1..485
                     /locus_tag="VE223_07170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21409.1"
                     /translation="RLLMVLALEYSDMLSIAQTIGIIGTLLLTLYFSKRQVRGLSVDI
                     ETKVLSDLDEKMHRLEEHLLERPELVRVINNVRSISPESVYSFDVLNVFSHAYDMYER
                     KVLNDNEWFGWVQWMRSCFRLGTIKEHWRQIQQSQWYDPIFEEFINKQVIGYIERENG
                     "
     gene            775..930
                     /locus_tag="VE223_07175"
     CDS             775..930
                     /locus_tag="VE223_07175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21410.1"
                     /translation="MPGLALYCVLGLGLSEGNLVIEASQSIPSSPQQLKVRESMKMAS
                     AQNSEIS"
     gene            927..1064
                     /locus_tag="VE223_07180"
     CDS             927..1064
                     /locus_tag="VE223_07180"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC21411.1"
                     /translation="MKSFRPMQRMGTPNDVANAAEYLAGNLAAFVSGQHLLVTGLHWH
                     R"
     gene            complement(1179..1412)
                     /locus_tag="VE223_07185"
     CDS             complement(1179..1412)
                     /locus_tag="VE223_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21412.1"
                     /translation="MIIKRNWRDIHPTIAYQIGIDWRLLSSVDKVREDIQGSPLDPQY
                     RCLKAITYVSFAELQPRLSHETLLHNNHGRYTG"
     gene            1602..2894
                     /locus_tag="VE223_07190"
     CDS             1602..2894
                     /locus_tag="VE223_07190"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC21413.1"
                     /translation="MSTSNKRIVILGAGYGGIFLATNVARYMKEKTGEVILVDRNPYH
                     QLLQEIHLVAAGFRTVSDVKIPISRLIAGMNIKFIQSTVKQIRPDTNLIVLESTEIHY
                     DLLIICLGASTKYFNIKGAEENSLPLRSITDASLIYDSVSSIVNSDKKQSVVIVGGGA
                     TGVSLGGALSDFINESKKSDSVSVIIIEALPTILSGWDERLVKKVEEVLREKGIRIIT
                     SSPVAKVENADGDGSDIYLSDEGKSKIHSSLIIWTAGIKGYDIPINPEVEKTKDGKII
                     VNEFCQIDRYPNIFSIGDIAAVRDENGKLYPPLAQIAVREAKYLSNLIPKHFIANDDT
                     GTAPLSIDEKFEYTIKVQLISLGSDDYVGFSNNHVISGNLARLVEEFSMDAYIKTLKS
                     GGKDIMNTSLYGDDILSHLVSGITFARFTFVKWLKNIA"
     gene            3206..3769
                     /locus_tag="VE223_07195"
     CDS             3206..3769
                     /locus_tag="VE223_07195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21414.1"
                     /translation="MLVTRFWLHMVRENKKTVLRTIRLSKGLDELLQKDADSKRITVG
                     ALVSTILTKYSQWDRYTEKFDMITFRQETLKAILEATDDETLIRKAREIGAKIPREFL
                     LFWFKKTDLESYLRYLELLCNYGGFARYELESNRGLYVITLLHNMSEKWSLFLKYVME
                     EGILSTIGILPRFEVNKGSLVIKIGAS"
     gene            complement(3991..4761)
                     /locus_tag="VE223_07200"
     CDS             complement(3991..4761)
                     /locus_tag="VE223_07200"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HZC21415.1"
                     /translation="MNQSDYLSAYRSLKLTRDAEGILVVEFHTNGGPLTFTAQDHTEF
                     VDAFYRISQDRANKIVILTGTGGEFILGIDFSSFGNVADPGVWSQVHDEGVQILENLA
                     NIRVPVIAAVEGHANVHSEYALLANVIVGSEGATFNDLPHFAAGIVPGDGIFTTWSYR
                     AGPGRAEAFLLNPTPLTARTAYDWGVVEEIVPNGKALVRARELASLYLKAPEVTRRNT
                     RVHFIQPLKERIVREVGYGLSLEGASAADLVKSMQAKS"
     gene            complement(4764..5720)
                     /locus_tag="VE223_07205"
     CDS             complement(4764..5720)
                     /locus_tag="VE223_07205"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC21416.1"
                     /translation="MENKNMSANKDKVAIVTGSATGIGYETAIHLAKNGFYTYASMRN
                     LPKADEITKIAKSENLPLRVIQLDVTDDISIKKAIDTVINESGKVDVLVNNAGYGLIG
                     SIEDMSIEELKAQYETNVFGVFRVTKAVLPYMRRQHGGTIINISSIAGRIALPLYSAY
                     VSTKFAIEGLSESMAYELEPFGIKVAIIEPGAIKTNFRREQAAKGSSEEGSPYSNMMQ
                     SPSKVIEEMLKHRLYPEEVAKTVIQAIENPKSKLRYIVGKDAEELLELRRKSTDEELF
                     WIVGQSILKKEEQVFMHNSSLVAAQEQFRIKKVATDREGGVI"
     gene            complement(5723..6493)
                     /locus_tag="VE223_07210"
     CDS             complement(5723..6493)
                     /locus_tag="VE223_07210"
                     /inference="COORDINATES: protein motif:HMM:NF004818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC21417.1"
                     /translation="MNNKNNKMSQKVAIVTGSSSGIGRTTAVALAKEGMKVVIAARRD
                     KEGEETLGLVKESGGDGMFVQTDVSNEDSVIALVEETVKRYGRLDYAFNNAGVVEDPA
                     PFANKTSSIFDKIMAVNVKGVYLSMKHEIPQMLKNGGGAIVNTSSVYGVIGNPQLPIY
                     VASKHAILGLTKAAALEYAKAGIRINAVAPGAIETEMMEQSIGNDKQLRQALVALHPI
                     GRAGKPEEIANAVVWLLSDKASFVTGHTLVVDGGWVGR"
BASE COUNT         1947 a         1292 c         1267 g         2047 t
ORIGIN      
        1 gaagattgct tatggtatta gcactagaat attctgacat gctaagtata gcacaaacga
       61 tagggattat aggaacactg cttctgacac tttatttttc aaagagacaa gtaagaggtc
      121 tctctgtaga catagaaaca aaagttctaa gtgacctgga tgaaaaaatg catagactag
      181 aggaacatct gctagaacgt ccagagctag tgagagtaat taataatgta cgatctatct
      241 cgcctgagag tgtgtactca tttgatgtac tcaatgtatt ctctcatgcc tatgatatgt
      301 atgaaagaaa agtactaaac gataatgaat ggtttggttg ggtacagtgg atgcgcagct
      361 gctttagatt aggaacaata aaagaacatt ggaggcaaat acagcaaagt caatggtatg
      421 accctatctt tgaagaattc ataaacaaac aagtgatagg ctatattgaa agagaaaatg
      481 gatagtagaa aagaagaaag gatattaagg aacaatacga tcggaaacct ggatttgaga
      541 taaagattga caaattaaac ttgaggtcaa tcaactgagc cagcaaaaga gtttagacaa
      601 gaaaaaattg attacaaacc aagacaaaca ctcattaaaa accccatttt acacagtaga
      661 gctgaggcca ctgtctgtct ctaaacctaa ttttttacac ttcagaaagc cgcgaaacac
      721 atttccgaca acggccgcat tatctacatt ggttcgagca ccacggcttt tccaatgcca
      781 gggctcgcac tatactgcgt tcttggtcta ggtcttagcg aaggaaattt ggtcatagag
      841 gcgtcacagt caattccatc ctccccacag caactgaaag tgcgggagtc tatgaagatg
      901 gcgtcagcgc agaattctga aatttcataa aatcgttccg tcctatgcag cgcatgggaa
      961 cgccgaatga tgtcgcaaat gcagctgaat atcttgcagg gaatctggcg gcgtttgtga
     1021 gtgggcagca tctgcttgtt acagggctgc actggcatag gtagtaagtg gatcattgac
     1081 tagatcttag tagaataatg aaccatacta gtattacata tattattacg caaagattag
     1141 atcgatatta tttctttgtt gtttcatttc tgtttttgtt atcccgtata gcgaccatgg
     1201 ttattatgga gaagcgtttc gtgggaaaga cgaggctgta attcggcaaa tgaaacatat
     1261 gttatagcct tcaaacaacg atattgcgga tctagcggag atccttgtat gtcttcacga
     1321 accttatcta cggatgacag caacctccaa tctatcccga tttgataggc tatagtagga
     1381 tgaatgtcac gccagtttct tttaattatc ataatgtgtc tttcttctta acaagtctgt
     1441 ggattagaat ttatgagttg tgttataaag tttggaatct aaatacttgg ctctagattt
     1501 tacatctttt gatctagaat ttggatgtta atctatctat ctactattaa caaccatatt
     1561 ttagtatgta tctcaactga ataatacaga aggattccaa gatgagcaca tctaataaaa
     1621 gaatcgttat actaggagca ggttatggtg gaatattttt agccactaac gttgctcggt
     1681 atatgaagga gaaaacagga gaagtaatac ttgttgatag aaatccttat catcaattac
     1741 ttcaagagat tcatttagta gctgctggtt ttagaacagt aagtgatgta aaaataccaa
     1801 tttcgagact aattgctgga atgaacataa aattcattca atctaccgta aaacaaataa
     1861 gaccagatac aaatctaatt gttttagaat cgactgaaat tcattatgat cttcttataa
     1921 tttgtttggg tgcttctaca aagtatttta atattaaagg agcagaagaa aacagtttac
     1981 cattacgctc tattactgat gcatcgttga tttatgatag cgtaagttca attgtcaatt
     2041 cggataagaa acaaagtgtt gtaatagttg ggggaggagc tacaggcgta agcctcggag
     2101 gtgcactatc cgacttcata aatgagagca aaaaatcaga ttccgtttct gtaataatta
     2161 tagaggcact gccaaccatt ctttcaggat gggatgaacg tttggtaaag aaagtagaag
     2221 aagtattacg tgaaaaagga ataagaataa ttactagctc tccagttgct aaagttgaaa
     2281 atgctgatgg tgacggcagt gatatttatc ttagtgatga gggtaaatca aagattcatt
     2341 catctcttat catctggact gcaggaatta aaggatatga tataccaata aatccagaag
     2401 ttgaaaaaac caaagatggc aaaataatcg taaatgagtt ttgtcagatt gatcgttatc
     2461 cgaacatttt ttctataggt gacattgctg ctgttagaga tgagaatggg aagttgtacc
     2521 cacctttagc tcagattgca gttagagaag caaagtacct ttcaaatctc ataccaaaac
     2581 actttattgc taatgatgat actggtacag ctcctttatc aatcgatgaa aaatttgaat
     2641 acactattaa ggtacaatta atctctttag gaagcgacga ttacgttgga ttttctaata
     2701 atcatgtaat aagtggcaac ctggcaagat tggtagaaga attttcaatg gatgcttata
     2761 tcaaaacgct caagagcggc ggtaaagata tcatgaatac tagtttatat ggagatgaca
     2821 tattgtccca cctagtatct ggaataactt ttgcacggtt tacttttgta aaatggttaa
     2881 aaaacatagc gtagtaattg aagaagctac ttgagtttac cattagctaa gtgggtatta
     2941 atagtcaaca aatccaatac gaacctatat agcagtgtat ttgcaacagt taagctacag
     3001 ctaataggtg gactatgcat cgcatctaaa tggtgtgatg gaaatgcttc tatcttcaca
     3061 tcatttagct tgattatagt acctttggca tcaaaattaa ccagacctta cctacaaata
     3121 attttttcat cctatcaatg agcaattgct atgtctaggc cctgtcataa ccatcaattt
     3181 gctttctgca aagtttaaat gatttttgct ggttacaagg ttctggctgc atatggtcag
     3241 agaaaataag aagaccgtgt tgagaactat tagattatct aagggattag acgagttgct
     3301 tcaaaaagat gcggattcaa agagaattac tgttggtgca ctcgtatcca caattctaac
     3361 taaatattca caatgggata gatacactga aaaatttgac atgattactt tcagacaaga
     3421 aaccttaaag gctattctcg aggcaaccga tgatgaaaca ttgattagaa aagctcgtga
     3481 gataggagct aagataccca gagaatttct tctattctgg ttcaaaaaaa cggatctcga
     3541 atcatacctt cgatatctgg aattactatg taattacgga ggctttgcac gctatgaact
     3601 tgaatccaat agaggtttgt acgttattac tcttcttcac aacatgagtg agaaatggtc
     3661 tctgtttctt aagtatgtca tggaagaagg catactgagt actattggca tattaccaag
     3721 atttgaggtc aacaagggtt cactagttat taaaatcggg gcatcttgaa gatatcaaaa
     3781 caagttctag agaatgagaa ttgtcctatg tagtataata agtcattttg ttctttattc
     3841 aagatatttc acactactgt ttgcccaggt aattttctgc tagcttctat aaattccgct
     3901 gtatctttcc ctacaccgta gacttggttg tttagtccat aacaaaaatg ttagaaactc
     3961 ttttggcttg accttctaag ctacaaaagg ctaactcttt gcttgcattg acttgacaag
     4021 gtcggctgcg gatgcacctt caagggagag cccgtagcca acttctcgca cgattctttc
     4081 cttcaacggt tggatgaagt gcacccgagt gtttctacgt gtgacttctg gagccttcag
     4141 atagagtgat gccagttcac gcgccctcac gagtgccttt ccatttggca cgatctcctc
     4201 aaccactccc cagtcataag cagtacgcgc tgtcagtggc gttgggttca gcaaaaatgc
     4261 ctccgccctt cctggtcctg ctctgtaact ccatgttgtg aatataccat cacccggcac
     4321 tatgccagcg gcgaagtgcg gtagatcatt gaaggtcgcc ccttcgctgc ctacaatcac
     4381 attggccaat agcgcatact cagaatgcac attggcatgt ccctctaccg cagcaatcac
     4441 tggcacgcga atgttcgcca agttctcgag aatctgtact ccctcatcat gcacctggct
     4501 ccaaacaccg ggatcggcta cgttgccaaa tgacgaaaag tcaatgccca agatgaactc
     4561 tccgcctgtt ccagtgagga tgacgatctt gtttgctcga tcctgtgaaa tccggtagaa
     4621 ggcgtccaca aattccgtat gatcttgagc cgtaaaggtc agtggaccac cgttggtgtg
     4681 aaattcaacc actaaaatgc cttctgcatc tcgagtaagc ttcaagctgc ggtaagcgga
     4741 taaataatct gattgattca ttttcaaatg acgccccctt ctctatcggt ggcaactttt
     4801 tttatcctga actgctcctg cgctgcaact agactactgt tatgcataaa tacttgctct
     4861 tcttttttga ggatactttg ccctactatc caaaagagct cttcatcagt agatttcctt
     4921 cgaagttcga ggagttcctc ggcatctttt cctactatgt atcttagttt tgatttggga
     4981 ttttctattg cttgaatgac ggtctttgca acctcttctg gatatagacg atgctttaac
     5041 atctcttcaa ttactttaga aggtgactgc atcatattcg agtacggact accttcttct
     5101 gatgatccct ttgctgcttg ttctcttcta aagtttgtct taattgctcc tggttcaata
     5161 atagcaacct tgattccaaa tggttctagc tcatatgcca ttgactcact taagccttct
     5221 atagcaaatt tagtacttac ataagctgag tacaacggta gtgcaatacg gcctgcgata
     5281 gagctgatat tgataattgt accaccgtgc tgccttctca tatatggaag taccgccttt
     5341 gttaccctaa atacaccaaa aacgtttgtc tcgtactgtg ctttcagctc ttctatggac
     5401 atgtcttcga ttgaaccaat aagtccatag cctgcattat ttaccaatac atcaaccttt
     5461 ccgctttcat tgattactgt gtcaatagcc ttcttgatgg atatatcatc agtaacgtca
     5521 agttgtatta cacgcaatgg cagattctca ctttttgcta tctttgtgat ttcatcagcc
     5581 tttggaaggt ttctcattga tgcgtatgta taaaagccat ttttcgccag atgaattgct
     5641 gtctcatagc ctattccagt tgcacttcct gtaactatag ctaccttatc tttatttgca
     5701 gacatattct tgttttccat atttagcgcc caacccatcc accatcaact actaacgtat
     5761 gacctgtgac gaaagatgcc ttgtcagaca aaagccaaac aacggcattt gcaatctctt
     5821 caggcttacc agcacgacca ataggatgca atgcaacaag agcctgtcgg agttgtttgt
     5881 catttccaat tgattgctcc atcatttcag tttcaattgc acctggagca acagcattta
     5941 ttctaattcc agcttttgca tattctaggg ctgcagcttt ggttagtcct aatatagcat
     6001 gtttgcttgc aacataaatt ggcagttgcg ggttaccaat tacgccgtat acagatgaag
     6061 tgttcactat tgcacctcct ccgttcttta gcatttgggg tatctcgtgt ttcatcgata
     6121 ggtaaacacc ttttacattt acagccatta ttttatcaaa aatacttgat gttttattgg
     6181 caaatggtgc aggatcttct actacacctg cgttattgaa tgcataatca agtctaccat
     6241 acctcttgac tgtttcttct acaagcgcaa tgacactatc ttcgtttgag acatctgtct
     6301 gtacaaacat accatcacct ccagattctt tgactagccc aagggtttct tctccttcct
     6361 tgtctcgtct agctgctatt acaactttca ttccttcttt ggcaagcgca acagctgttg
     6421 ttcttccaat tccagaacta gaacctgtta cgattgcaac tttttgtgac attttgttat
     6481 tcttattgtt cattttttct tcaccaaatt atattggtag tctctgcgtt tattttggat
     6541 ggttacattg ttg
//
LOCUS       DASQSJ010000364         4600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_581123, whole genome shotgun sequence.
ACCESSION   DASQSJ010000364 DASQSJ010000000
VERSION     DASQSJ010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4600
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581123"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(562..3114)
                     /locus_tag="VE223_07215"
     CDS             complement(562..3114)
                     /locus_tag="VE223_07215"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HZC21418.1"
                     /translation="MRVEIENFKPYKKVLLPSHDSKNSNLAEGLFLIHGNNSMGKTSF
                     VQGMLWGLLGDGLMRDQKRKSLVKVGESSCKVDIIFDLSGTLYRISRKLVLKKPKDPI
                     IESDFNEEAVLSKKDKDDNAKFVPIANRSKPVNEEVERMLGVSADVIESTVYIRQKDV
                     DRLALADPRELRELIMILFGLDEFERVKKDLANMSCNLQDSLDILKEEVGGLNSEKKE
                     LAKERRQLEEKEQVLNEVHADLKTNKYELLKLPSEDILIKVRTNETEIKTKTNNLQLI
                     NNLITEKTSYMKSQEQRIESLRKRIADQEGKKAHVEYTLEQLPSKENLHMLNELLSEI
                     RIKEMQVRTLVNRSSITLDLDAIVQPGNIKHRLDNISNDIEALKKKKQQAYDSIEYLR
                     RISTSTDVLSGIKKNSIRYIKEEDKCPVCNKPIDNKENMILGLGREMRDIECNYKDIN
                     LQVRRAVESHSEIEGEMEAKREIRTFLETLFTVSEDLVNLRELLLSMLNQYSVKSVQD
                     FLSCNGFSTIGEMISQVSKLEIEIANCDDNIHLLNRQIDEENYRYKKYEEQLSQSEDQ
                     MNSIIDDLTQLKNKQQEYLRSLLTVSLDDLIHHFECKTIDEILIKRKTIEASITSKQK
                     LLDIVGMEIHSLREEIKNRESTLVQLSQKEAIILEKENELRHVKYLRGEIDGFISNYV
                     VQGRMLGALRQCTNDYLTQLTQGRYTIDNITSKMRRIRGGMESHGLEMTLMDSKDNMI
                     KNKDQLSGGDETSLGLALRIAISKLMGRIRPFKNSEKKPPLINSIIMDEPMASLDSSR
                     RRILVNILIQDKSFKQIFLTTHNDLEFGDYNSIMVSEDENGKRLVDYTPLQL"
     gene            complement(3120..4427)
                     /locus_tag="VE223_07220"
     CDS             complement(3120..4427)
                     /locus_tag="VE223_07220"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HZC21419.1"
                     /translation="MKIAHISDTHLGRRPKQTRPGIINQEIRPIEDDFYSAWIKFVEE
                     IIDIPSNSQPDVILHCGDFFDTPAGYDPSPPPEYARKVAAMTFKQLHDAHIPLVIIDG
                     NHGRYMEYRSSTLSIFPVAFDNIHLYTHYDARDSLRTKKPQFKDFGDLNLRVITHPSI
                     ESRALCTTGAEQTYKDWIQIQNRSINPNMINLAMGHGMIENSSLHPDFLKGDYDYIAL
                     GDDHKMHKVTNRAWYSGSTELWSFNEFNTEKGYLMVDVEQGKAFPRVTSKKIQSSRKI
                     ICENVEVFPQDTNSEIIRKVKSVLDSYGLNVTYEYSTAARVKIILKGKKTYGDSFNIG
                     EVESFLRKLALDSNDYNIVEFILDLPPYTEYADVKDNQGQETEYVEYLIEDPEKEFKD
                     YVTTMRNEELKKQRLNPDLLAKIFAKVLTRHDDDIGPEGCDNN"
BASE COUNT         1271 a          899 c          728 g         1702 t
ORIGIN      
        1 catatgaaaa aatgtttcct agaagaaaga gcaatattat tgacgataat ggtaaattag
       61 ttaaagcaga agaaactcgc caacgacggc aacaacaaca gcaacgataa gaatagcagc
      121 agcaaataat cctaataacc aattaagaac cttgaatatt ccgcactaga ctcttgccct
      181 gtattggcta agttctggac tactatattc tgttacattg cgtttcttct catgcaccta
      241 atgcgcatgt ctaaaggttt ttcttttcaa atcgtaaatt aaatgtgttg catgctgtaa
      301 acataataga actgtctctt tgtctatcta taataagcat aaatgaaaaa aatgacaaaa
      361 cggttctaat ataatttgta tcttttagcg tttaatgctt tcttaattct tgtaccgttt
      421 gaattccttc caaacaatca aaaaatacgc tggaagtaga aaacttgcct gtaatagaaa
      481 gggctattta atgcacaaaa tttgatgttg aattattgta ctagataggg ttcaacgctc
      541 gatatttata ctcttatctc tttagagttg cagaggtgtg taatcaacta gtcgtttacc
      601 attttcatct tcgctaacca taattgaatt ataatcgcca aattctaaat cattgtgagt
      661 agtaagaaat atctgtttaa agcttttatc ttggatgagt atattgacta gaatacgtct
      721 tcgactggaa tctaagctcg ccatgggctc gtccattatt attgagttta ttaacggtgg
      781 ctttttttcc gaatttttga aaggtcttat cctacccata agctttgata tagcaattct
      841 taaggctaat cccaaagaag tttcatcgcc tccgctcagt tgatctttat tttttatcat
      901 attatctttg ctatccatga gcgtcatctc caacccatgg gattccatac caccccttat
      961 ccttctcatc ttagaagtta tattatcgat ggtgtaacga ccttgtgtaa gttgtgtaag
     1021 gtaatcgttg gtacattgcc ttagtgctcc tagcattctt ccttgtacta catagttaga
     1081 aataaagcca tcaatttcac cacgtagata tttcacatga cgcaattcat tttctttttc
     1141 tagaattatt gcttcctttt gtgagagttg tactagagtt gattctctgt tttttatttc
     1201 ttctcttaag gaatggatct ccattcccac tatgtctaat agcttttgct tacttgtaat
     1261 gctcgcctca atagtttttc ttttaatgag tatttcatcg atagtcttgc attcaaaatg
     1321 atgtatcaga tcatccaaac taacagtcaa gagacttctg aggtattctt gctgtttgtt
     1381 ttttagttga gtaagatcat caattatact gttcatttga tcctctgatt gtgatagctg
     1441 ttcttcatac tttttatatc gataattttc ctcgtctatt tgtctattca gtaggtgaat
     1501 gttgtcatca caatttgcaa tttcaatctc aagctttgag acttgagaaa tcatctctcc
     1561 gatggtcgaa aatccattac acgataaaaa atcttggact gatttaacag aatattggtt
     1621 tagcatagac aaaagcaatt ctctaagatt gacaagatct tctgaaactg tgaataatgt
     1681 ctcaagaaaa gttctaattt ctctttttgc ctccatctct ccctctattt ctgaatgact
     1741 ttcaacagct cgtctaactt gcaagttgat atccttgtaa ttgcattcta tgtctctcat
     1801 ctctcgacca agacctagta tcatattttc tttattatct ataggcttat tgcaaacagg
     1861 gcatttgtcc tcttccttaa tgtatcttat actgttcttc tttattccag agagtacatc
     1921 tgtagatgtt gaaattcgtc ttaaatattc aatactgtcg tatgcttgct gcttcttttt
     1981 tttcagagct tcgatatcat ttgatatatt atccaaccta tgtttgatat ttccgggttg
     2041 cacaatggca tccaagtcca aagtgataga agatctgtta accagagttc taacttgcat
     2101 ctcttttatc cttatttctg aaagtaattc atttaacata tgtaaattct cctttgatgg
     2161 aagttgttct aatgtgtatt cgacatgagc tttcttgcct tcctgatcag caattctttt
     2221 ccttaaggat tctattctct gctcctggct tttcatataa cttgtttttt ctgtaatcaa
     2281 attattgatt aattggagat tattagtttt agtttttatt tcagtttcgt ttgtcctaac
     2341 tttgataagg atatcttctg atggtagctt taacagttca tatttgttcg ttttcaaatc
     2401 agcatgtact tcatttaata cctgttcttt ttcttcaagt tgtctcctct cttttgcaag
     2461 ttctttcttc tcggagttta atcctccaac ttcttctttt aggatatcga gactatcttg
     2521 caagttgcaa ctcatgtttg ccaaatcctt ttttaccctt tcaaactcat caagtccaaa
     2581 gagaatcatt attaactccc ttaactctct tggatccgct agagcgagtc tatcaacatc
     2641 cttttgacga atgtaaactg tactttctat gacatcagca ctaacaccta gcatacgttc
     2701 gacctcttca ttaactggtt ttgatctatt agcaatcggt acaaatttgg cattgtcatc
     2761 tttgtctttt ttagatagta cagcctcttc attaaaatca gattcaataa ttggatcttt
     2821 tggtttttta agaactagct tcctgctgat cctgtatagt gtaccactca ggtcaaatat
     2881 aatgtctacc ttgcagcttg attcacctac cttaacaagt gatttcctct tttgatccct
     2941 cattaaacca tcaccaagaa gtccccataa cattccttga acaaagctag tctttcccat
     3001 ggagttattg ccatgtatca gaaaaagtcc ctcagcaagg ttactgtttt tactgtcatg
     3061 gctaggcagg agaaccttct tgtatggttt aaagttctca atttcaaccc tcattatctt
     3121 caattgttat cacagccttc agggccaata tcatcatcat gacgagtgag gacttttgca
     3181 aatatctttg caagtaaatc aggatttaac ctctgttttt tcaattcttc atttctcata
     3241 gttgtcacat agtctttgaa ttctttttcg ggatcttcta ttaaatattc tacatattcg
     3301 gtttcctgcc cttgattatc ttttacgtca gcgtattccg tatagggagg aagatctaaa
     3361 atgaattcaa caatattata atcatttgaa tcaagagcca attttctaag aaatgattct
     3421 acttccccga tattaaaaga atctccatat gtttttttgc cttttaaaat tattttcact
     3481 ctggcagcag tagaatactc atatgttacg ttaagtccgt acgagtctaa tacactttta
     3541 acttttctta ttatctcaga attagtatct tgcggaaata cttctacatt ttcacatatg
     3601 atcttcctag atgattggat tttctttgag gtaactcttg gaaaggcctt tccctgttca
     3661 acatctacca taagatatcc cttttcagta ttaaattcat taaagctcca cagttccgta
     3721 gatccggagt accatgcacg atttgtcacc ttgtgcatct tgtgatcatc tcctaatgca
     3781 atataatcat aatcgccctt aaggaaatct ggatgtaaag aagaattctc aatcatgcca
     3841 tggcccattg ctagatttat catgttggga ttaatcgatc tgttctgaat ctggatccag
     3901 tctttgtatg tctgttccgc gcctgttgta catagcgctc tcgattcaat agatgggtgc
     3961 gtgataactc ttaggttgag atctccaaaa tccttgaatt gaggtttctt ggttctcaaa
     4021 gaatctcttg catcataatg tgtatacaaa tggatattat cgaaggcgac tggaaatata
     4081 ctgagagttg aactacgata ttccatgtac cgtccatgat tgccatctat aataactaat
     4141 ggaatatgag catcatgcag ttgtttgaat gtcattgcag ctacttttct agcatattca
     4201 ggaggaggac taggatcata acctgcgggc gtatcgaaaa agtcaccaca atgcaatatg
     4261 acatccggtt gactattact gggaatatca ataatctctt caacgaactt tatccaagca
     4321 gagtaaaagt catcttctat aggtcgtatt tcttggttta ttattccagg ccgggtctgc
     4381 tttggtctcc tgccaagatg tgtgtctgat atgtgggcta ttttcatgat tagatgatac
     4441 ccaaccaaag tctttaaaag tagttaatta attatcgtat ctgccatcag ctgtgtctgt
     4501 ggtctttgtt ttctttcgtt gttgttccaa aataaaaggt acagctgtcc ttcttgcgat
     4561 aagtgataga tatgccgcag caacagcagt cgtaatctta
//
LOCUS       DASQSJ010000365         2226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_381255, whole genome shotgun sequence.
ACCESSION   DASQSJ010000365 DASQSJ010000000
VERSION     DASQSJ010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381255"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(173..295)
                     /locus_tag="VE223_07225"
     CDS             complement(173..295)
                     /locus_tag="VE223_07225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21420.1"
                     /translation="MTNDSGNTRAKRKVTKKGILITALIVAGIIAASFLIYFVP"
     gene            complement(855..2063)
                     /locus_tag="VE223_07230"
     CDS             complement(855..2063)
                     /locus_tag="VE223_07230"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HZC21421.1"
                     /translation="MEKPDKANITAAATLILARVVYAINWFNIASIFSHIASDFKQDV
                     SLLGLITASFFVGVGTFQVPGGIIAAKQGARKTAILGIAIASSAALLCGLSSQLQEIE
                     ILRFVVGVGMAFFFGSSVTLITTYLGKGSEGLGVGLLNSAHSIGGIIGLFGWVILAEI
                     IGWRQSFVLSGGLGIVTSLLLVVLLPSKQQENVIGFKIRLSDIKRIIFDKSLFGFGLI
                     LLGAQIAWGLPLTFIVFYMEDSLKINSAMAGLVGSLSLIFSLVTAPVFGIIYDRITHV
                     KKLLFVLGLGMSISVAAIGIIENRSALYVVVVSTVLVGIFSSGVFTIVYTASKESYRT
                     RNPYLPSKYGTLSVSWVNGLSLFGAFWVPVVFSSIVHHLGYQIAWLLGGIFSILFVLP
                     PILRIERYKS"
BASE COUNT          783 a          434 c          346 g          663 t
ORIGIN      
        1 cttagctctt tgattattca tatatataac tgccctagcc tacaaacgtt aaagtaaaaa
       61 gttaaactga acaacgacaa catagctctt gcaagcccac aacataagaa ggctcatgta
      121 gattaggaaa ttcttgaaaa tgtcgccatt ctattctata taatcaattt tcttacggca
      181 caaaatatat tagaaaactt gccgcgataa tccctgcaac aattaatgca gttatcaaaa
      241 ttcctttttt agtaaccttt cttttagcgc gagtattgcc agagtcattc gtcatatcta
      301 tgttaaaaca attgtcctaa taaataaact tcccgaagaa tccaaaagtc aagacaattc
      361 ttgttgttgt tggttggtta atgcgcttat gattaaaatg gttcatattc tgctgttttt
      421 aaaacgaaac tgtagagatt ctattgaaaa atttcatcac ggttcgctgc attagaatag
      481 atatgaaatc aaagataaga ttaatgcaaa aatcttatat gacctaggta ggtcccactt
      541 ttgtaccaca atttaaacta tcttatgaaa aataaatctt gcatcttgca tgttattgta
      601 tacttatcaa ataaccaatt acataattga ttattttgat gtttctcgaa tatatcgtat
      661 ctgtaaccat tagataacaa gatttgtatc gttggttggt tctcaaatca aatcttagcg
      721 aatttaaact catatgaatg aatcataatc agcacactct tgtacggagc tgattataag
      781 aaacaagata taagaaagta ttaaagctgt ttcagaaatt catggagcaa atgtttatga
      841 aaacaagtct tctgttaact tttatatctt tctattctaa gtatgggagg caatacaaac
      901 aaaatagaaa agataccgcc taacaaccaa gcaatctgat aacctaaatg atgtacaatt
      961 gatgaaaaaa caacaggaac ccaaaacgca ccaaacaatg ataagccatt cacccagctt
     1021 acggaaaggg ttccgtattt agaaggcaga tacggatttc ttgttctata tgattccttt
     1081 gatgcagtat atactatagt aaatactcca gatgaaaaga ttcctactag aactgttgag
     1141 actacaacca cgtataatgc tgatctgttc tctatgatac caattgcagc tacgctaatt
     1201 gacataccta gaccaaggac gaacaatagt ttcttgacat gtgtaattct atcatagatt
     1261 atcccaaata caggagcagt caccagtgaa aatatcaaac tcaaacttcc gaccaaacca
     1321 gccattgctg aattaatctt caatgaatct tccatataaa atacaataaa tgtcaaaggc
     1381 agcccccatg ctatctgagc tccaagtaat atcagtccaa atccaaacag agatttgtca
     1441 aatattattc tcttaatatc agatagccta atcttaaagc ctatgacgtt ttcttgttgc
     1501 ttgcttggta ataaaacaac caaaagcaaa ctagttacta tccccaatcc tccgctcaag
     1561 acaaaacttt gtctccatcc tataatttcc gcaaggatca cccatccaaa aagtccaatg
     1621 ataccgccta tagaatgagc agaattaagt aaaccaaccc ctagtccctc agagcccttt
     1681 cccaaatatg ttgtgatcag agtaacacta gagccaaaga aaaatgccat tccaacgcca
     1741 accacaaacc gtagtatttc tatttcctgt aattgagacg atagaccgca aagcagtgct
     1801 gctgatgaag ctatcgctat tccaaggatt gcagttttcc tagcaccctg ttttgcagca
     1861 atgattccac cgggtacctg aaatgtaccc acacctacaa agaagcttgc agtaattagt
     1921 ccaagcagtg aaacatcttg tttgaagtct gacgctatat gtgaaaatat agatgcaata
     1981 ttgaaccagt ttattgcata tactaccctt gcaagtatca aagttgcggc ggcagtgata
     2041 ttggctttat cgggcttttc caaattgata tagtctttgg aatacaggat gctagatatt
     2101 ttattgttac aatgttccta ggataaaaca ttgttcaaga tatcattgta actagattct
     2161 actaacaagg ttaaacagta ttactaagaa caaggacatg gaaaaggaag tgatattagg
     2221 atatga
//
LOCUS       DASQSJ010000366         4681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_381466, whole genome shotgun sequence.
ACCESSION   DASQSJ010000366 DASQSJ010000000
VERSION     DASQSJ010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381466"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            320..577
                     /gene="moaD"
                     /locus_tag="VE223_07235"
     CDS             320..577
                     /gene="moaD"
                     /locus_tag="VE223_07235"
                     /inference="COORDINATES: protein motif:HMM:TIGR01682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin converting factor subunit 1"
                     /protein_id="HZC21422.1"
                     /translation="MTNQFDPTITVKLFASSREIIGTDKIQVELSEKMTVRDLREMIL
                     ATQPLLSKIQFVIAVNHKVVNDATTLNQTDEVAVLPAVSGG"
     gene            1161..1583
                     /locus_tag="VE223_07240"
     CDS             1161..1583
                     /locus_tag="VE223_07240"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HZC21423.1"
                     /translation="MISITSEPIDLCNILAEAKDRSAGGIALFIGSVRDHNEMETIYE
                     IYYEAYKEMAEQNLIEIENEVRKKWNIKRFVAVHRTGNLRVGDISIAVAASAEHRKEA
                     FEACKYGVDVIKLRVPIWKKEVSGSGGEWVEGIPLKSD"
     gene            1585..2499
                     /gene="moaCB"
                     /locus_tag="VE223_07245"
     CDS             1585..2499
                     /gene="moaCB"
                     /locus_tag="VE223_07245"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF002947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional molybdenum cofactor biosynthesis
                     protein MoaC/MoaB"
                     /protein_id="HZC21424.1"
                     /translation="MVEGMFDVADKPETLRRAVAQAIVKVEPTTITLIKEGKSPKGNI
                     FDAARLSGTMAAKRTWDLLPYCHPIPLDNIRVDVSLKEQSVEIIVEVKNVAKTGVEME
                     ALTGACIAALTVYDMLKPIDETLLIESIRLLNKSGGLKTFFERFDRGFKAAVLVASDS
                     RDESQDQSGRVVINRLGKNGFDIVDYKVVPDEADLIESELKKFCDELKVDIVITSGGT
                     GVGPRDVTPEATKKVIQKDLAGVAEALRSYGQKRTPLSMLSRGVAGIRGTTVIVNLPG
                     SVKAVEQSLDCLFPGIFHIYKMIWGHSH"
     gene            3023..3400
                     /locus_tag="VE223_07250"
     CDS             3023..3400
                     /locus_tag="VE223_07250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21425.1"
                     /translation="MILGFIIAIFSKVFTSTYKWLDHYFIAYISNFTKGFEFGIIIIA
                     AILFLLINIFLTIKYLRKLPKCYVIEIVDMSGNIATLDGLRVKFATYDAAESYARFYN
                     EMYREHYKFKVIGLQEQYPKTLD"
     gene            4096..>4681
                     /locus_tag="VE223_07255"
     CDS             4096..>4681
                     /locus_tag="VE223_07255"
                     /inference="COORDINATES: protein motif:HMM:TIGR00427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HZC21426.1"
                     /translation="MLNQIFSTLGQNILLLSLSSSSFLLPPLHLFIDNLIKSTIALFV
                     VIDPIGSVPLFIALTEKMRKDERKAVSKTAIVTAAALLVVFAVSGTQIMDIFGITIFS
                     FMIAGGVLLFIVSIELLTHGVWRFGSGRVEEEDRIGKTAAEELITKKQRPSLGESGVV
                     PLAFPLLAGPGAITSVIISFQTSGLVVTVFSIAIV"
BASE COUNT         1587 a          759 c          935 g         1400 t
ORIGIN      
        1 tcgtacttat caaaacattc attttaatta tctcatcaat gggataatta aaatgaattc
       61 caggttgaac cctgttatct aatcttggtt aaattgaatg tacagtattc tggttttgtg
      121 tgtaagacaa tctccacaat gccaatccac agcttgcaaa agatttgaac ctatcaagac
      181 attcataaac ttggttctct gacagggttg tcccatttgt aaaaccaggt tgcgcagatt
      241 gtacatcaaa taatacaggt gtcttccata taatcatgta ttataagcca gccatcgtat
      301 taaatagcta gataaagtga tgactaatca gtttgatccg actataaccg taaaattgtt
      361 tgcatcttct agagagatta taggcacaga taagatacag gtagaattat ctgagaaaat
      421 gacagttcgc gatctacgag agatgatttt ggcaacacaa ccactattat caaagattca
      481 gtttgttatt gcagttaatc ataaagttgt aaatgatgcc actacgctaa accaaacgga
      541 cgaagtggcg gttctacctg cagttagcgg aggttagttt ttatagtata cacgactgct
      601 accattacag acaacaacga ctgctacatt cgcaagatac cctaaatacg atcctgacga
      661 gagcgaggac attgtgtcta ttatgtttta tgtttggtca gacttacgat attatcgtgg
      721 tgtagttttg cagcaaagac tggtagagaa tgatccagcg taatcgtagc gttgatgcta
      781 acaacatggc gaccagaagt tatagcatga aaaatatgag ttcatgatta gcagatgatc
      841 tatcgataat tacgattaga cgatccctat gtatgctaat attatacttt ccgtatttgt
      901 tcataatctc acgattttta gtaaattgaa gagattatat gtacgtctga taacagccta
      961 attaaacaat aataatattc attactaaag catagaacaa aacaagttgt tacccaagga
     1021 tctcacggta gaatcatgca gtcattgaga gatgatatat agatgcatat tttggtatag
     1081 cgaaacgaat taaataataa ttgattcgcc tcttttgata accatactat ttatttgagt
     1141 tgccgaaggt aaataataac atgatctcca tcacttcaga accaatcgat ttatgcaaca
     1201 tattggcaga agccaaagac agatcggcag gtggaatagc tctcttcatt ggaagtgtaa
     1261 gagatcataa tgaaatggaa acaatttatg aaatttacta cgaagcatat aaggaaatgg
     1321 cagaacaaaa tcttattgaa attgagaatg aagtaagaaa aaaatggaac ataaagaggt
     1381 ttgtagctgt ccacagaaca ggtaatttaa gagttggaga tatcagtatc gcagttgctg
     1441 cgtctgcaga gcatagaaag gaggcattcg aagcttgcaa atacggtgtc gatgtaataa
     1501 agctcagagt accaatatgg aagaaggaag tatctggctc cggtggagag tgggtagaag
     1561 gtattcctct caaaagtgat tgaaatggta gaaggcatgt ttgacgttgc agacaagcca
     1621 gagacattaa gaagagcagt tgcgcaagcc attgtaaaag tagagccaac taccataact
     1681 ttaatcaagg aaggaaaatc accaaaaggt aacatcttcg atgcggccag gctatccgga
     1741 acaatggcag caaagcgaac atgggatctg ttaccatatt gtcatccaat acctttagat
     1801 aatattaggg tagatgtctc gctaaaggaa caatcggtag aaatcatcgt agaagtaaag
     1861 aatgtggcca agaccggagt agagatggaa gcactaaccg gtgcgtgcat agcagccttg
     1921 acagtttatg atatgctaaa gcctatagat gaaacgttgt taatcgaatc aataagactc
     1981 ctaaacaagt ctggaggtct caagaccttc ttcgaaagat tcgatagagg cttcaaagct
     2041 gcagttttgg ttgctagtga ttctagagat gaaagccaag accaatctgg cagagttgtt
     2101 atcaacaggc taggcaaaaa tgggttcgat atagtagatt acaaggtcgt accagacgag
     2161 gcggatctta tagaatcaga acttaagaaa ttctgtgatg aattaaaagt tgatattgtg
     2221 ataacaagtg gcggcactgg agtgggtcct cgggatgtaa ctccggaagc aacgaagaag
     2281 gttatacaaa aagatttagc aggagtggca gaagccctta gatcgtatgg acagaaaagg
     2341 acaccattat cgatgctgtc aagaggagtt gcaggtatta gaggaactac agtaatagta
     2401 aaccttccag ggagtgtaaa ggctgttgaa caatcacttg actgcctttt tcctggaata
     2461 ttccacatct ataagatgat atggggacat agccattagt gacttataat attcattctc
     2521 actgttattc ctacaagtta gagacagata taggagaaga ataaaatatt tcattatatg
     2581 atctttatta acctgcgata ataacgacaa ttctggttgc tagaaacaaa cggaggtcat
     2641 tttgtatatt ctttgtcaat gctttagcaa ctttcaataa gagcaatatt atagagatta
     2701 tggtaacaat gcatacaacg atgacgattt ttggatcact ttaaatgtaa cggaccgact
     2761 tgtgcctttt cacctatctt ggctatttat cgagcaggtg atgcactcaa aggtttaggt
     2821 atcttggcgg ttgatgtatg aatgcaaatg tgagaatcgg actggccgta atcttgtatc
     2881 aaaagatgaa gtaagtcgtt tataaaatta agttaacatt attgtatatc tattcatata
     2941 tatgcagcaa catgagatcg tgataatatt ctgtcattta cctatagtta ttataggcca
     3001 tcatagatat aaaagagaat agatgatact tggtttcata atagcaatat tttccaaagt
     3061 atttacaagt acatacaaat ggttagacca ttattttata gcttatattt caaactttac
     3121 aaaaggattt gagttcggta taattatcat cgcggcaata ttattcttgt taatcaacat
     3181 attcttaaca ataaaatatc taagaaaact tccaaaatgc tatgttatag aaattgtcga
     3241 tatgtctggc aacatagcta cacttgacgg tctgagagtc aaatttgcta cttatgatgc
     3301 tgccgaaagc tacgctcggt tttacaacga gatgtaccgt gaacattata aattcaaagt
     3361 tataggtctt caagaacaat atccaaagac tttagattga atatgattct acatgcaaga
     3421 gaccaagact tgacatggat aagctatttg tgttggcagc ttcaagaagt atttccttac
     3481 aggagctaaa tgcattgtca tcgaaggtca atctcactag tacagtccta attgctggga
     3541 atgggatcag gaatatataa tctggaaaaa tgcattatta taagagtatc gtatatgcaa
     3601 tgtatgatca agaacctaaa atacattgga ttacaactat gcacctgtac atggattgaa
     3661 ataatgaccg gtgttggaat aactttgtat ttgttatatg ttcaaagtta tatgcttgct
     3721 gctcttacat tggcattgtt tgcgcctctt atagcgttcc attttgtttt gacaaagttg
     3781 tcaaaattag aagattgtac atgtaggagt acaaaatgaa atttcaaaat gtgattttat
     3841 ttgctaaaaa ctttcagatg acgaattact gaacatcgct atccgatatg atattgatat
     3901 gataagtgga aacaagcagt ttcatacatc gcatcacaag ctgatcaaga gctaaaatgc
     3961 aatactgaca aaggtgacat tccaaattct tattatccaa agtttcgtta gaatgcttga
     4021 tgaaagagca tatactgaga ttcgaaatag caaagcaaat aatttggatg taataaatac
     4081 caaagttgct gtaccatgct aaatcaaatt ttttctactc ttggacaaaa tatattatta
     4141 ttgtcattat catcgtcttc atttctgctg cctccattac atctattcat agataatctg
     4201 atcaaatcca ctatcgctct ttttgttgtg attgatccaa taggtagcgt acctctattt
     4261 attgccctaa ctgaaaaaat gagaaaagat gaacgaaagg cggtttcaaa aactgccata
     4321 gttacagcag ctgctttact tgtagtgttt gcagtatctg gtacccagat aatggacata
     4381 tttggaataa ctattttcag cttcatgatc gcaggtggtg tactattgtt tattgtatca
     4441 atcgaattat tgactcatgg tgtttggagg tttggtagcg gtcgagtaga agaagaggat
     4501 agaataggaa agacagcagc agaagagctg ataacaaaaa aacagagacc atcccttggt
     4561 gaatcagggg tagttccatt agcttttcct ctacttgcag gtcctggagc cattacatca
     4621 gtaataattt catttcaaac ttctggacta gtagtaactg tattctctat tgcaattgta
     4681 a
//
LOCUS       DASQSJ010000367         4084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_262517, whole genome shotgun sequence.
ACCESSION   DASQSJ010000367 DASQSJ010000000
VERSION     DASQSJ010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4084
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_262517"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(462..878)
                     /locus_tag="VE223_07260"
     CDS             complement(462..878)
                     /locus_tag="VE223_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HZC21427.1"
                     /translation="MVLIHASRDIPASVDSVWNIIADIDREPEFWHGTKSIRNINKQG
                     NIVEREVTIAFRNSVCREIVELDAKTSVNIKIIEGPIKGKKVIALTTLENNTTRINVE
                     WNIRVSGLFGMFTGMIKKHILKGTEEALDRISKTVS"
     gene            complement(1296..1883)
                     /locus_tag="VE223_07265"
     CDS             complement(1296..1883)
                     /locus_tag="VE223_07265"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HZC21428.1"
                     /translation="MRKLKLQVQMSVDGFIAGPNGEMDWMVLDWDDKIRNYVFELTEP
                     VDTILLGRKMTDGFISYWSDVMTKPDDPSSIDRSHAFAKKMIDTPKIVFTKTLKKSQW
                     PNTDIATGDLTYEISKLKNMKGKDIIVYGGASFDSSLIRTGLIDEFHLIINPVAIGNG
                     MTIFKDLNKIQKFNLVKSVTFESGEVGLHYEPKRV"
     gene            complement(1880..2386)
                     /locus_tag="VE223_07270"
     CDS             complement(1880..2386)
                     /locus_tag="VE223_07270"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HZC21429.1"
                     /translation="MTKTIVQKITPFLSFDQNAEEAAKFYTSIFKNSKIIDIAYYGKS
                     AAEASGRPEGTVMLVRFELEGQLFMALNGPDFKFSQAISFLVNCDTQEEVDDLWNRLS
                     EGGKELQCGWLIDKFGVSWQVCPSVLVEMIQDKDAMKSERVMAAMLQMTKLNIQRLRM
                     AYERGGRR"
     gene            2956..3300
                     /locus_tag="VE223_07275"
     CDS             2956..3300
                     /locus_tag="VE223_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21430.1"
                     /translation="MEKVLLEPLATRADSIFLEKYPLQAAAIIEEEEGQSQQEQEQEH
                     QQQQIKVIDAFGQETEPICNYHTCHHKFSIHGHSSHVCKCHHPFNYATGVSISSITTK
                     NKDKRKVLQHYD"
     gene            3385..>4084
                     /locus_tag="VE223_07280"
     CDS             3385..>4084
                     /locus_tag="VE223_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21431.1"
                     /translation="MKTLTYCLDILKIKEDTEIYRNAIEIAQTVPIKSDNGENDDNAN
                     NQWIIAMKIIADMCSSAKNSNNNTTNSLIFSQSQLCDFVTLSAKGIDERKMKSELVSN
                     TILKIYRDIMENYETFNHNLISNYPSIIMDVISIINSGIDTKGNTVSSISIDKYYQSR
                     RQQAAISAEEDEAPVPISTTTTTTTAGITTSVAAAAAAAALPEDKITLSSYSKEELVE
                     SLCQITNRRRNDLQE"
BASE COUNT         1327 a          767 c          726 g         1264 t
ORIGIN      
        1 ttagtttcaa tcgtaagatt atctttcaga ggattgcctg ataagggata ggggctgtgc
       61 ttctctcttg aatctttacc gacaggcgta agcgaggtcg taattaggaa tagatgcaaa
      121 gatatattga ctagtttcag aattacaata aaagtcaagc cagtcatagc cgaagtgggg
      181 cggtaacagg ttcctttatt ccggttgact aatgagattt gaaaaaatta tttctaataa
      241 cattagccgg aaggcggtat tggacttagt gactattcta tttctttgta atgatttcac
      301 tgccttcact accttcacaa taaatcggat tactataaaa tattacagac gtgtatatta
      361 aaaagaagta ttcggtcagg atacggaatg agagccaatc gatgcatgaa caaaacatta
      421 tagctaattg aactgcgagg aatggatagc tggctcacat tttaggatac tgtctttgat
      481 attctatcca atgcttcttc agtgcctttc aaaatatgtt ttttgatcat ccctgtaaac
      541 attccaaaaa gcccacttac cctgatgttc cattctacat taattctagt ggtattattt
      601 tcgagagttg taagcgcgat aactttcttt ccttttattg gtccttctat tatttttatg
      661 ttaactgaag ttttggcatc taattctact atctctctgc atacagaatt cctaaaggct
      721 attgttacct ctctttcaac gatattacct tgtttgttaa tatttcttat agacttggtg
      781 ccatgccaaa actccggttc cctatcaata tctgctataa tattccatac actatcaact
      841 gatgcaggta tatctctact ggcatgaatt agaaccatac ggttttcact gctaatttta
      901 agttaagcgt tgaattataa atgttcaacg aaattacaca catgcgatag aaatattata
      961 tatccgcggg ggaaccataa gatgagacac aatctacaga agtggctgag tatgctaaaa
     1021 aagtaacgta gatggccgca ataattgttg gactgtttgt gaaggcagtg aaagcagtga
     1081 aggctatagt gaatattcct ctatacagga ggagataaag atcactaaaa ccttacttgc
     1141 gtatgcgtaa attgaacgga aactaatccc attatcaccc tatcaggagg actatgttgg
     1201 acttaatgac tgacttttca tggtaatgcc ttcacaggct tcaccacctt cacctatgct
     1261 agtgatattt acatactgtt atcagtaaaa tactatcaga ctctctttgg ctcataatga
     1321 agcccaactt ctccgctctc aaatgttact gacttaacca gattgaattt ctgaatcttg
     1381 ttcaaatctt tgaatatggt catgccgttt ccaattgcaa caggattgat gatcaaatga
     1441 aattcgtcaa tcaatcctgt cctaatcaag gaggaatcaa atgaggcacc accataaacg
     1501 atgatgtcct ttcctttcat attctttagc ttggagattt cgtatgtaag gtcaccagta
     1561 gcgatgtccg tatttggcca ctgtgatttt ttcagtgttt tcgtgaaaac aatttttggc
     1621 gtatctatca tcttttttgc aaaagcatgt gatcgatcaa ttgatgatgg gtcatcaggt
     1681 ttggtcatca catctgacca gtatgaaata aagccatctg tcattttgcg gcccaaaaga
     1741 atagtatcga caggttcggt caattcgaat acataatttc tgattttgtc atcccagtcc
     1801 aaaaccatcc aatccatttc accgttgggc cctgcaataa aaccgtctac tgacatttgc
     1861 acctgtagtt ttagttttct catcttctac ctcctctctc gtatgccatc ctcaatcgct
     1921 gtatgttgag tttcgtcatc tgaagcatcg ccgccatgac cctttcggat ttcattgcgt
     1981 ctttatcttg tatcatctca accaagacac taggacatac ctgccatgat acgccaaact
     2041 tgtctatcaa ccatccacac tgaagttctt ttccaccttc ggaaagtctg ttccaaaggt
     2101 catctacttc ttcctgtgta tcgcagttca ctaaaaacga tatggcttgt gagaatttga
     2161 aatctggacc gtttaacgcc ataaataatt gtccttcaag ttcaaacctc acgagcatta
     2221 ccgttccctc aggtcttcca gaggcctctg ctgctgattt cccgtaataa gcgatatcta
     2281 tgatttttga gtttttgaaa atagatgtat aaaatttagc tgcttcttct gcattctgat
     2341 caaacgacaa aaacggcgta attttttgta cgatggtttt agtcatgttg ttgtcctgta
     2401 gctaatatga tataaaagac attactctcc aaggggtgct tattaaggcg gattccatat
     2461 tagcacagtt ggaatttgcg aagtattcaa ttccatattt tagcgtaagt aaggaaaaat
     2521 atcatagagt catatttcat gaactattat gtttgcaaca tgaagaagac tgtagatcac
     2581 gatgcgatat atagagatca gaagtccttg atattctcta taggataggc ttttgttata
     2641 ctttgtcgta ttattcttaa actattaggc agaaccgagc agcactagat taagtgagat
     2701 agacagagaa gatggagaag taagcataat aatgaggacg gcaatggctg ggcctcttcg
     2761 tatttgtcta ctacataatg taagtggggt aatggcggag gaaaagtgat cagcataata
     2821 tcacctgctc tgcatgacta cttaagagac actcttgtac caagttacaa agaatgcatc
     2881 tcttgcaata atagaactca atttacatgc atcaagtgtg ggtattgcta cagctgccac
     2941 tggaagaaag agaagatgga gaaagttcta ttagaaccat tagcaacaag ggctgactct
     3001 atatttttag agaaatatcc attacaggct gcagctataa tagaagaaga agaaggacaa
     3061 tcacaacaag agcaagagca agaacatcaa caacaacaaa taaaggttat tgacgcattt
     3121 ggtcaggaaa cagaaccaat ttgcaactat catacatgtc atcacaagtt ttcaatacat
     3181 ggtcatagta gccatgtttg caaatgccat catcctttca attatgctac aggagtatca
     3241 atatcatcaa taactacaaa gaacaaagat aagcggaagg ttttacaaca ttatgattag
     3301 aaagttacta tattactatt atcaaagaga tttgtctttg aagtctaaat gtcagaatat
     3361 catttattat tatgcatatc catcatgaaa actctaactt attgtcttga tatactaaag
     3421 ataaaagaag atactgaaat ttacagaaat gctatagaga ttgctcaaac tgttccaata
     3481 aaatctgaca atggtgaaaa tgatgataat gcaaacaatc aatggattat agccatgaag
     3541 attatagcag atatgtgttc ttccgcaaag aacagtaaca acaatactac taactctctt
     3601 atattttccc aatcacagtt gtgtgacttt gtaactttgt ctgcaaaagg tatagatgaa
     3661 agaaaaatga aatcagaact agtaagcaat acaatattaa agatctatag ggatattatg
     3721 gaaaactatg aaacctttaa tcataattta atatcaaatt atccaagtat tatcatggat
     3781 gttatttcca ttattaacag cggtattgat actaaaggca atacagtaag ttcaattagt
     3841 attgataaat attatcaatc aagaaggcaa caggcagcaa tatctgctga agaagatgaa
     3901 gcaccagtac caatatcaac tactacaaca acaaccacag caggaatcac aacatctgta
     3961 gctgcagctg ctgctgccgc cgcattacct gaagacaaaa ttacattatc ttcatattca
     4021 aaggaagaac ttgttgaaag cctttgccag ataacaaaca gaagaagaaa cgatctgcaa
     4081 gagt
//
LOCUS       DASQSJ010000368         2321 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_66139, whole genome shotgun sequence.
ACCESSION   DASQSJ010000368 DASQSJ010000000
VERSION     DASQSJ010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66139"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(540..797)
                     /locus_tag="VE223_07285"
     CDS             complement(540..797)
                     /locus_tag="VE223_07285"
                     /inference="COORDINATES: protein motif:HMM:NF021458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2171 domain-containing protein"
                     /protein_id="HZC21432.1"
                     /translation="MSDSVSNWESTIQKTVRSSEGNLIGNVDAIDGNSILVSTEGGRT
                     RYKIPKHIVRGFDGHQVSLNVQKAQLERFRGAEAEGFREVK"
     gene            934..1413
                     /locus_tag="VE223_07290"
     CDS             934..1413
                     /locus_tag="VE223_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21433.1"
                     /translation="MSLETEVDQMVNDMMQKEGWTRSYALSVLRSKFESEERHQEVEY
                     VNNLIRKEAEEQEEEKELAPIATTTNTTAEEVVTSTNEPSKVTRPPQQKQETVSSKSI
                     SRQLDKQTIQINKKITQMLQPLQKQSQLIRQLQSQLKQLQRQVSQIQKAVRIGKKKK"
     gene            1669..>2321
                     /locus_tag="VE223_07295"
     CDS             1669..>2321
                     /locus_tag="VE223_07295"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HZC21434.1"
                     /translation="MYYPRRKINEYNIATSIFSLIIIVTSLGIITAFIDYFDINTIRV
                     AYGQASQMNSNSDSDNRNTNSIDLQNIPAEKVHVGDIDIAYKVFGKGDPFLLISGSGL
                     VMDAWNPTILRDLSSNHAVIIFDNRGVGNITAGNKPFSIIQFANDTSSLMDALKIQKA
                     DVLGFSMASFIAQELALLHPERVNRLVLYGASCGGKEAIPENPQVTKIGIDLYNKYI"
BASE COUNT          813 a          412 c          404 g          692 t
ORIGIN      
        1 atttagaaag tctgatgtgc tacaccacat tgcgaacgag tatggtagtt ctattcactg
       61 ctccaaccag tctatgagta ttttcatagc agttctttga aattgtggat tctaatattg
      121 ctatatcgtc tctctgtaaa ggagaaggag aaaacaaata taagatgagc ctcagttcat
      181 gctttaactt atgctattgt gcttaaatta acttgagcat atagatattt gtataattta
      241 atgtgataca atacagtcac ttggtagcag taaaagaagt atctggagag gaggaggaga
      301 tatgtatgtc atatatcgaa atgggtggcg atactacgtg tactgccgcc ttacttttct
      361 aatttctttt aaagttttgg tgtaaaacaa caaattctca tatggcttat tatactctta
      421 ttgttcttcg ttcaatacaa cagaatttgt accactcttc tttatatact tcatcgaaat
      481 tctcacacaa tttactatcg ctaatgagaa ggaccttgcg ctgttattca actttattat
      541 tattttactt ctctaaaacc ttcagcttca gctcccctga atctttcgag ctgtgctttc
      601 tgtacattaa gtgacacttg atgaccgtca aaaccacgta ctatgtgttt tggtattttg
      661 tatcttgttc ttccgccttc cgttgacacc aatatcgaat ttccatctat ggcatcaaca
      721 tttcctatca aatttccttc acttgacctg acagtttttt gaatagttga ttcccagttt
      781 gatactgaat ctgacatagt tatttatcag aaaaatggaa tggaggatac tatataagaa
      841 ttgcatgaac tttggctatg ccgacgtatt tgatatttag caatgactac aagtttttta
      901 ctttgagcat atatgtatat gtgtgtagaa aaattgagtc tcgaaacgga agttgaccaa
      961 atggtaaatg acatgatgca aaaagaagga tggacaagat catatgcttt gtctgtacta
     1021 cgtagtaaat ttgaaagtga agagagacat caagaagttg aatatgtaaa taatcttatc
     1081 cgaaaagaag ccgaagagca agaggaagaa aaggagttag cacctatagc aaccacaaca
     1141 aatacaacag cagaggaagt ggttacatca acaaatgaac cttcgaaagt aactcgtcct
     1201 ccacaacaaa aacaagaaac agtatcttca aaatccatat ctaggcagtt agacaaacaa
     1261 accatccaaa tcaataaaaa aataacacaa atgcttcaac cccttcaaaa gcaatcacaa
     1321 cttataaggc agctccaatc ccagctaaaa cagctccaaa gacaagtttc acaaatccaa
     1381 aaagcagtac gcataggaaa gaagaagaaa tgatggaaaa agaatggtca tttgtgaacc
     1441 aagaacaatc ttcaactact atatgcatat agtagtatca ttatggcgat atccagtgat
     1501 gggcgaagaa agaactcaat tcttcatacg taacccaaca tgggcgatga gcaggattag
     1561 gtagaagaac aagaggagga atttagagag ataacaacaa ccaagttttt tgatgaatat
     1621 tattgatatg ctaaaacctt aaagacatct acacaaatac actagcaaat gtattatccg
     1681 aggagaaaga taaatgaata caatatagct actagtattt tctcacttat tatcattgtt
     1741 acatcattgg gaatcataac tgctttcatt gactacttcg acattaatac catacgcgtt
     1801 gcatatggcc aagcaagtca aatgaattca aatagtgaca gcgataaccg taatacaaat
     1861 tcaatagact tacaaaatat accagcagaa aaagttcatg ttggcgatat agatatcgca
     1921 tacaaagtct ttggtaaagg tgacccattt ctgcttatta gtggtagcgg tcttgttatg
     1981 gatgcttgga atccgactat cctaagagat ctttcctcaa atcacgcagt aatcatattt
     2041 gataatcgtg gagttggaaa tattacagcc ggtaataagc cattctcaat aatccaattt
     2101 gcaaatgata catctagttt gatggatgct ctgaaaatac aaaaagcaga cgtccttgga
     2161 ttttctatgg cttcttttat agctcaagaa cttgcacttt tgcatccaga aagagttaat
     2221 agacttgtac tatatggtgc gtcatgtggt ggaaaagaag ccatacctga aaatcctcaa
     2281 gttacaaaaa tcggcatcga tctttataat aaatatataa a
//
LOCUS       DASQSJ010000369         6958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_538865, whole genome shotgun sequence.
ACCESSION   DASQSJ010000369 DASQSJ010000000
VERSION     DASQSJ010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6958
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538865"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2141
                     /locus_tag="VE223_07300"
     CDS             <1..2141
                     /locus_tag="VE223_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HZC21435.1"
                     /translation="SDPKLKIILNSLGHSSLYPPQQLALSKGLLEGKNLLITTPTASG
                     KTLIAVIAAIKAIEKGLKVVYLTPLRAIATEKYHYLRVLENVNTIDKKIRIKIATSDY
                     DSSGIELADADVIILTNEKMDSVIRHGAEWISDVGLFVIDEVHLLGDRERGPTLEMIL
                     TKIRKIYPRSQLLALSATVANSEDIAMWLGCELIQNNWRPTKLVEGVYEHGIVSMNNG
                     SRFKIETPSTSSAIDIAIDSVKNSGQVIIFAETRKRTSSLAIKAAEGIYKRLGRNAKA
                     MAAEASSRIIKNGDDTELTRTLSKVIARGVGFHHAGLGQASREIVEESFKSGIIKILI
                     ATPTLASGVNLPARRVILSSILRYDADHGGHVPISVLEYKQLCGRAGRPKYDTFGESI
                     IVAESGINAQEIYDHYILGTPEPLRSQMTNDRAVRVHLLSTIATIPGMKKFEIHELFQ
                     STLFAQQYRKETVDFKVDTSLRYLECEELIKSRNDRYIATDFGRRTSLLYIDPATAVE
                     FRKAIQSIERHRTDKNDDNKYVLGFLHLISNSPDFYPKLSLRKKDIEELNTILQQHSC
                     ELFYQIDEHECSRSLIALYKWINETSDRVLSDRFGIEPGDMHRIAESSEWLAYSLYEV
                     SKVVKREDLLSSIYNLRIRIKYGVKEDLLSLVKLEGIGRIRARALYDAGLTDIRKLTK
                     TPESRLSAIPKIGPTVAKRLKEQLTWAQKA"
     gene            2575..3582
                     /locus_tag="VE223_07305"
     CDS             2575..3582
                     /locus_tag="VE223_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine-1-phosphate transferase"
                     /protein_id="HZC21436.1"
                     /translation="MLDLSSGVNILIYGSIVSVLSFFVTLFGTPKIIRSLISKGEVVQ
                     DYHKPEKPNVPRPAGPVLIIGIAAAEILLYILTWKIKVIAILLTATIAFIVGFIDDRK
                     VMPGWFKPVALIGAAIPLIVLGAHGSHLNLIFGRADIPLLYLPLIMIIIPISGNTVNS
                     IDVLNGVASGFISITMIPLLVSVAIFGSNEVFIAALPLLFTTIALYRYHKFPSRIFPG
                     DSGTLLIGAMYGAIAVAGNSEVIGAVALLPAVMNSFLFLSSVKKIVEHRQVKSRPTVL
                     MNDFKLIASKEKEAPTTLLRLILAEGPLSEKEIGYKIFKLAAFSSFLAFISIIIQYHF
                     R"
     gene            complement(3744..4388)
                     /locus_tag="VE223_07310"
     CDS             complement(3744..4388)
                     /locus_tag="VE223_07310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21437.1"
                     /translation="MKLNNRYSATLSKKLIVRRLNTIALVASITAAFVIGFSIITSLV
                     VTVTAQPVPVIGMTTGTTSNIKAVNITSPTKGQQVPLGKDLTILGTSVGNASTSNCQV
                     IVGLNGIKPYTSATGTGPGGPKDYSKWSFTLTPKYAMLKPGPDNKITARYKCSGTSSN
                     NNSNLVLVSSVNVTGVATATNIPANQLQRQSPSIIENNATISASRKDTGIPWLP"
     gene            complement(4782..6233)
                     /locus_tag="VE223_07315"
     CDS             complement(4782..6233)
                     /locus_tag="VE223_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HZC21438.1"
                     /translation="MLSKIDKKRGLSLQFYLLICLASIGIFIVAYFFGYGLYSTLLYN
                     QQEQERQKQDPSLRIPERNALKVQEVTGGLASPTSMAFLDGNNLLVLEKNGQVRLISN
                     GILQKQPILTLSVNTTAERGLLGIATLRRYDGSSNSNNHHIDNPNAIKSNINTSEKIV
                     NKKATTTTKTISATTSNITHSEVFLYFTESKPGEPLRNRVYRYDWNEQKHLLFNPDLL
                     LDLPAAPGPYHNGGKMVIGPDHYLYVVIGNLNTGDGLLQNNKHGKEPDGTSVILRIKP
                     SDGSAAPKNPFINNTNSAMHKYYAYGIRNSFGMTFDPITGYMWDTENGEATYDEVNLV
                     KPGFNSGWYQVMGPMSRSNVTERNLVNFRGSHYSDPVFSWYNCIGVTGIEFLKSSKLG
                     QKYMNNIFVGDINNGNLYYFELNKTRTGFKFNPITQPGLADLVADNKDEVSEITFGTG
                     FGGITDIKTGPDGYLYILSYGNGCLYRIGPAQQ"
     gene            complement(6447..6617)
                     /locus_tag="VE223_07320"
     CDS             complement(6447..6617)
                     /locus_tag="VE223_07320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21439.1"
                     /translation="MTEGEDENNDKVCCAYCGKEFSDKDDWPYVDGDSNRGVLKIEHF
                     CSEEHKHNFFTN"
BASE COUNT         2218 a         1296 c         1217 g         2227 t
ORIGIN      
        1 catcagatcc caagttaaag atcattctta attcactagg tcattcatca ctttatccac
       61 cgcaacaatt ggctctttca aaagggcttt tggaaggcaa aaatttgctt atcacgacac
      121 ctacagctag tggtaagacg cttattgcag taatcgctgc aataaaggcg attgaaaaag
      181 gtctaaaagt agtgtatctt acaccattaa gagcaatagc tacagaaaaa tatcactatc
      241 ttcgggttct tgaaaacgtt aatactattg ataagaaaat tcgaatcaag attgctacta
      301 gtgattacga ttcatcagga attgaactag cagatgcaga cgttataatt ctaacaaatg
      361 aaaaaatgga ttctgttata cgacatggcg ccgaatggat ttctgatgtc gggcttttcg
      421 taatcgacga agttcattta cttggtgata gggagcgtgg tcctactctt gaaatgatat
      481 taaccaagat acgaaaaata tatccacgat cacagctttt agcattaagt gcaacagttg
      541 caaactcaga agatattgca atgtggctag ggtgcgaatt aatccaaaac aattggagac
      601 caaccaagct ggtagaagga gtatatgaac atggcatagt tagtatgaat aatggcagta
      661 gattcaagat tgaaacccct tctacttctt ctgcaataga tattgcgatt gactctgtta
      721 agaacagtgg acaggtaata atttttgctg aaacacgcaa aagaacctct tcgcttgcta
      781 ttaaggcagc tgagggcatc tataaacgac ttggtagaaa tgccaaagca atggccgcgg
      841 aggcatcgtc acgaataatt aaaaatggcg atgatacaga acttacaaga actctctcta
      901 aagtcatagc aagaggtgta gggtttcacc atgctggatt aggacaagca agcagggaaa
      961 ttgttgagga gtcgtttaaa agcggcataa ttaaaatatt gattgccact ccaactctag
     1021 cttcaggagt taaccttcct gcaagacgtg ttattctatc tagtatttta agatatgatg
     1081 ctgaccatgg agggcacgta cccattagtg tgttagaata caagcaacta tgtggcaggg
     1141 caggtagacc aaagtatgac accttcggcg aatcaatcat tgtagctgaa tctggcatca
     1201 atgcacaaga gatctatgat cattatatct taggtacccc tgaaccttta cgctctcaaa
     1261 tgactaacga tagagctgtc agagttcatc ttctcagcac aatcgcaacc attcccggaa
     1321 tgaaaaaatt cgaaattcat gagctatttc aaagcacatt atttgctcaa caatacagaa
     1381 aagagacagt agatttcaaa gtcgatacat ctttaaggta tttagaatgc gaggagctta
     1441 tcaaatcaag aaatgacaga tatattgcaa ctgattttgg aagaagaacc tcgcttcttt
     1501 atattgatcc agctaccgca gtagaattta gaaaagcaat ccaatcaatc gagaggcata
     1561 gaactgacaa aaatgatgat aataagtatg tattaggttt cctgcatctg attagcaata
     1621 gtcctgattt ttatccaaaa ctatctttac ggaaaaaaga tattgaagaa ttgaatacaa
     1681 tattgcaaca acacagctgc gaactattct atcaaataga tgaacatgag tgctcaagaa
     1741 gcttaatagc actttataaa tggattaatg aaactagcga tagagtacta agtgatagat
     1801 ttgggattga acctggcgat atgcacagga tagctgagag tagcgaatgg ctggcttatt
     1861 cattatacga ggtttctaaa gtagttaaac gtgaagattt gctatcgtca atatacaatc
     1921 tcaggattcg aataaaatat ggtgtaaaag aggatctgtt atcgcttgtg aaactcgaag
     1981 gcattggcag aataagagca cgagctttgt acgatgctgg cctgacagat ataagaaaac
     2041 taacaaaaac accagaatca agactatctg ccattccaaa aattggccca acagtagcaa
     2101 aaaggctcaa agagcagcta acgtgggctc aaaaagcata atgttacagt aataataggc
     2161 aatttatcat atttagcctt tcgacgatcc ttacgtactt gcctacttct gatctctatt
     2221 gcaaacagcc tattcaagta tcagtatatt ttagaagcag gagtttgaaa cttccgcttg
     2281 tatgtatata tgcttgccta tcaatgcaag ttataagcat atcgttgaaa ctaatgataa
     2341 taatactgcc agacctactt gatttcctaa tatttggcag gcatgatcga tctcaatttt
     2401 ctctcaaaat gtacgatatt aataatgcat taccgaacta ttcaaggata aaaattgtgt
     2461 gcagtacggc gggagaatat tttgctaatg acatgaatat tcacttttac acttgccgtt
     2521 gcaagcacaa tcacattata gagatattaa cctctattat atacggacta acaaatgcta
     2581 gacctgtctt ctggagtgaa tatcttgatt tatggaagca tcgtttctgt cctctcattc
     2641 tttgttacat tatttggaac acccaaaata attcgttcgc taatatcaaa aggcgaagta
     2701 gtacaagact atcataagcc tgagaagccc aatgttccac gaccggccgg accagtatta
     2761 ataataggga ttgcagcggc cgagatcctt ctttatatcc tgacatggaa aattaaagtt
     2821 attgcaatcc tactcactgc tacaatcgcc ttcatagtcg gatttattga tgatagaaaa
     2881 gttatgccag gatggttcaa accagttgct ttgatagggg cagcaattcc attgatagtt
     2941 ctcggagctc acggaagcca tctcaatctg atatttggca gagctgatat tccattacta
     3001 tacttacctc ttataatgat catcattcca atttctggca acaccgttaa ctccatagat
     3061 gttttaaacg gagtggctag cggatttata tcaattacta tgattccgct tttagtcagt
     3121 gtagccatct ttggcagcaa tgaagttttt attgctgcac ttcctttact ttttacaaca
     3181 attgctttat atagatatca taaattccca agtagaatat ttcctggcga ttcaggtact
     3241 ttgttaatag gggcaatgta cggggcaatt gcagttgcag gtaattctga agttattgga
     3301 gctgttgcct tactacccgc ggtaatgaat tcctttctat ttctttccag tgtcaagaaa
     3361 attgttgaac acagacaggt taaatcacga cccacagttc tgatgaatga tttcaaatta
     3421 atagcatcaa aagaaaagga agcgcctacc acgctgctaa gattaatcct agctgagggc
     3481 ccgctttcag aaaaagagat tggctataag atattcaaat tggcggcatt tagttcattt
     3541 cttgccttta tttcaattat tattcaatat cattttcgat aatgggatta caataagaat
     3601 aataatgata ataacgccat cctgtgttgg aattgcagca ttagagatgc aaatcctatt
     3661 gatagattcc aaaataatcc tatgccaaca attgaagagt acagaaagtc atcataaagt
     3721 atcgtacctt gtaagagaat ctcttatggc aaccaaggaa ttccagtatc tttacgacta
     3781 gcagaaatgg tagcattatt ttctattata cttggcgatt gtcgttgcaa ttgattcgca
     3841 ggaatattag ttgctgttgc tactccagta acatttacac tactaaccaa taccaagtta
     3901 gaattattat tactactagt accactacat ttgtacctgg ctgtaatttt attatctggt
     3961 cctggtttta gcatagcata tttaggagta agggtaaaac tccatttaga ataatctttt
     4021 ggtccaccgg gtccagttcc agtagctgat gtatacggct ttattccatt gagacctaca
     4081 attacttgac aattagatgt agatgcatta cctacagaag tgcccaagat tgtaagatct
     4141 ttacctaatg gtacttgttg acctttggta ggcgaggtta tatttacagc tttgatattg
     4201 gaagtagtgc cggttgtcat tcctattaca ggcacaggct gggcagtaac cgttactact
     4261 aagctagtaa taatactaaa tccaattaca aaggcagcag taattgaagc tactaatgca
     4321 atagtattaa gtcgtcgtac tattagtttc tttgataatg ttgcagaata tctattatta
     4381 agtttcattt gttatctagc atacactaaa tattatttaa tcattttatt agttaatgga
     4441 gcatttgctt tatctccata tacaagtgcg ggatttacga attgatagta agagaagaaa
     4501 ggaaagttag ttcctacatc gtagtagtag attttcatac tgttccactt atctctaata
     4561 attctgttta ttcctttacc attgtcttta cgcttacaat aagatgattc ttcctacttt
     4621 ttactgatac agatatagtt tccttctttt aaacttgaaa gcattactta gtagattata
     4681 aactacaagt cattcttgtg ttatctgctt tgaaaaaaag gttttcctct ttttcagatc
     4741 ctttctataa accatcgtta gacaaatcac aaaactcaag actattgttg agcaggacca
     4801 atcctatata agcatccatt tccatatgat aatatatata aatatccgtc aggaccagtc
     4861 ttaatatctg ttattccacc aaagccagtt ccaaaagtta tttcagaaac ttcgtcttta
     4921 ttgtctgcta ctaggtcagc taaaccaggt tgagtaatag ggttgaactt aaagccagtc
     4981 ctagttttgt taagttcaaa ataatataga tttccattat taatatctcc cacgaaaata
     5041 ttgttcatat acttttgacc aagctttgat gatttgagaa attcgatacc cgttactccg
     5101 atacaattat accagctaaa tactggatca gaatagtgag atcctctaaa attgactaaa
     5161 tttctttcag ttacattgct cctagacata ggtcccatta cttgatacca gccgctgtta
     5221 aatccaggct taactaaatt gacttcatca taagtagctt cgccattttc tgtatcccac
     5281 atataaccag tgatgggatc aaatgtcatt ccaaaactgt ttctaatgcc atatgcataa
     5341 tatttgtgca ttgcagaatt agtattattt atgaagggat ttttaggagc tgctgaacca
     5401 tcacttggtt taattcttaa tataacagag gtaccatctg gctcctttcc atgcttattg
     5461 ttttgtaaaa gaccatctcc tgtattcaag tttccaatta ctacataaag ataatgatct
     5521 ggacctatga ccatttttcc tccattgtga tatggtccag gcgctgctgg aaggtccaat
     5581 aacaaatcag ggttgaaaag tagatgtttc tgttcattcc aatcatatct ataaacccta
     5641 tttcttaatg gttcgccagg cttggattct gtgaagtaaa ggaatacttc ggaatgtgtg
     5701 atattgctcg ttgttgctga tattgtcttt gtagtagttg ttgctttctt atttactatt
     5761 ttttctgacg tatttatatt actttttatg gcattgggat tatcgatatg atgattatta
     5821 ctattactac taccgtcata tcttcttagt gtagcaattc ctaataatcc ccgttctgct
     5881 gtcgtattaa ctgataatgt taatatgggc tgcttttgta atatcccatt tgaaatgaga
     5941 cgaacttggc cattcttctc taaaaccaaa aggttgttac catctaaaaa tgccatgcta
     6001 gttggagaag ccaagcctcc tgtaacctct tgtactttta atgcgtttct ttctggaatc
     6061 ctcaaagatg gatcctgctt ttgcctctcc tgctcttgtt gattgtataa cagtgtacta
     6121 tacaaaccat agccaaaaaa ataagcgaca ataaaaatac caatagatgc taaacaaatc
     6181 aacaagtaga actgcaatga tagacctctt tttttatcta ttttagacaa catattttat
     6241 ttttgctttc ttaggatact tctccattat gaatctcaac atagtctctc cctgtcttct
     6301 gattagtgca gaggatgtga aaacccattt actagaatgg tttattctat ccatgttgta
     6361 taatatagag gagactagca caaagtagca gagaaggtaa ggatagaaga aataaggatg
     6421 acgacaagga cacactgtta ttacttctaa tttgtgaaaa aattgtgttt atgttcctca
     6481 gagcaaaaat gttctatctt caaaactccc ctgttagaat cgccatcaac atagggccaa
     6541 tcgtccttat ctgaaaactc tttgccacaa taagcacaac agaccttatc attattctca
     6601 tcctcacctt cagtcattga tatcgcacct cttatccttt ataggcatat ttgttattga
     6661 tatactctat caacaaaaat ttttttatac acgataaagt ttctaatcat gtttggacag
     6721 accatttttg atcgcgtcca tatgctgagc tttctcacaa tatattgtat atttggtaaa
     6781 ccttatttat caatgttgac tccgactctg tccagccaag aacatcatca acatcctata
     6841 tgtcccccgt aaagatacaa tagacacctt ttgccaacta ctaacgtacc atatattatg
     6901 aagtacatag ctttaggtta tcatatgcat tttcatcaca ttattctcaa attttcta
//
LOCUS       DASQSJ010000370         2388 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_382035, whole genome shotgun sequence.
ACCESSION   DASQSJ010000370 DASQSJ010000000
VERSION     DASQSJ010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2388
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382035"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1225
                     /locus_tag="VE223_07325"
     CDS             <1..1225
                     /locus_tag="VE223_07325"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HZC21440.1"
                     /translation="EKILRSRVGDVFNERFREDEFVTTLSNTVASYSELAKRTGFGNA
                     YQYMSNLLSVWNNDVLEPIRDTLWRTPSQKIQELEKYSLFHYKMNADGGNPNSTTSSD
                     KTSTILRTTNNMTPLLVVYAFINRHYILDLLPEVSVIRNLSKHGFDIYATDWGTPSAY
                     DKDLTIGHFVNSYMDKAVDLIRKNTNSDKVSLFGYCWGGNLVLMYAALHPKKVKNVVT
                     IATPGDFSADNTLLSLWTRNVKVDTLLDAFGNAPSMLLNAAFSLRNPIENIHKYPHFF
                     EQPHGLESTMEFVATETWLYDSPPVIGEIYREFVKCCYQKNLFIKNQMEIYDSSGSSD
                     LIDLKNITAPFLNVIAQKDDLVAPSSSIALNNAVGSRDKNMIESPSGHVGLIIGQRAH
                     KEVWPKVASWLKDRS"
     gene            complement(1602..>2388)
                     /gene="tfb"
                     /locus_tag="VE223_07330"
     CDS             complement(1602..>2388)
                     /gene="tfb"
                     /locus_tag="VE223_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018540.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HZC21441.1"
                     /translation="INRAERRAFSLEEAKDRMRLGSPSSLARYDMGLATVIGDTNTDA
                     SGRHIDAAMRSRMHRLRIWDSRARIYNSGRNLVHALDELDILKDKLGLSGAVVEKAAY
                     IYRKALDRRLVRGRTTLGIMAAATYAGCREMETPWTLKDIAAASNLKRKDIARNYRML
                     LFELDLKIPSADPLKCISKVANKANLTENTKRHAISIMNEVASKGISAGKDPMGMAAS
                     IVYISCLKTGEDRTQTQIADVSGVTDVTVRNRLKELKSRLNLH"
BASE COUNT          763 a          448 c          441 g          736 t
ORIGIN      
        1 agaaaaaata ctcaggagca gagttggcga cgtattcaat gaaaggttta gagaagacga
       61 gtttgttact acgctttcta atactgttgc aagttattcg gagttagcaa agaggacagg
      121 ctttggcaat gcgtaccagt atatgtctaa cttgttgtca gtgtggaata atgacgttct
      181 agagccgata agagatactt tgtggagaac accttcacaa aagattcagg agctagagaa
      241 atactcttta tttcattata aaatgaatgc tgatggcggt aatcctaatt ctactaccag
      301 tagtgataaa acatcaacaa tcttaagaac aacaaacaac atgactccat tattggttgt
      361 gtatgcattt ataaacagac attatattct tgatttactt ccagaagtaa gtgtaattag
      421 gaatttatca aaacatggat ttgatatata tgctacggat tggggtacac cttctgctta
      481 tgataaagac cttactatag gtcatttcgt aaacagctat atggataagg ctgttgatct
      541 gataagaaag aacacaaact cagacaaggt ttcattattt ggttactgtt ggggcggtaa
      601 tctagtactt atgtatgcag ctttacatcc aaagaaggtc aagaacgttg taactattgc
      661 tactcctgga gattttagtg ctgacaatac attactaagt ctttggacaa ggaacgtgaa
      721 ggtagatacg ttgttagatg catttggaaa tgctcctagt atgttgctaa atgcggcatt
      781 ttctctaaga aatcccatag aaaatattca taaatatcct cacttcttcg aacaacctca
      841 tggcttggaa tcaacaatgg aattcgttgc taccgagaca tggttatacg atagtcctcc
      901 tgtaatagga gaaatatata gagaattcgt taagtgctgc tatcaaaaga acttgtttat
      961 aaaaaaccag atggagatat acgatagcag tggtagcagt gatcttattg atctcaaaaa
     1021 cattacagca ccattcctta atgtaattgc gcaaaaagac gacttggtag caccatcatc
     1081 tagtatcgct ttgaacaatg ctgtagggtc tagagataaa aatatgatag aatctccatc
     1141 tggacatgta ggattgataa taggacagag agctcataag gaagtatggc ccaaggtagc
     1201 cagctggtta aaggatagat catgaaagaa aaaatacata tgtacaagaa aactaagcaa
     1261 atattcttca tatcacagaa agagagatct tcgccatcag tattccaatc ctgcaacggt
     1321 gtaaacaaca aaatattctt ttaccttacg tatttaggaa aagactggcg agaccttcct
     1381 tttacgaaaa aattttggcg tagtgtcata aaaatgatac gcttattcca gaaggcagaa
     1441 gccaaaacaa aataagagtt agaatgatag tgcctaaaca tatacattca aatttgactt
     1501 acaatatgac tgtttatctg caatcaacat tatcatgacg acaataggcc taggattaaa
     1561 tgttaaaacg tgaccataga aggtaataca attttaccat tttaatgaag attaagtctg
     1621 ctttttagtt cttttaacct atttcgaacg gtgacatccg ttactcctga tacgtctgcg
     1681 atttgagttt gagtcctatc ttcgcctgtc tttaaacatg atatataaac aattgatgcg
     1741 gccattccca taggatcttt cccagcagaa attccctttg atgcgacctc attcataata
     1801 cttatcgcat gtcgtttggt attttcagtc aggtttgctt tgtttgcaac cttggaaata
     1861 catttcagtg gatcagcact aggaatcttt aaatcaagtt cgaataacaa cattctataa
     1921 tttcttgcaa tatctttacg tttaaggtta ctagctgcgg caatatcttt tagtgtccat
     1981 ggcgtttcca tttctctaca tcccgcatat gtagcagcag ccattatacc aagggtcgtt
     2041 cttccgcgaa ccaatcttct gtccagagcc tttctatata tgtatgcggc cttctccact
     2101 acggcacctg acaatccgag tttatctttc aatatatcaa gttcatctaa agcatgcaca
     2161 agatttctgc cggaattata aatacgggcc cttgaatccc atatccttaa tctatgcatt
     2221 ctgctacgca ttgctgcatc tatatgtcgt ccactagcat ctgtgttagt atcgccaata
     2281 actgttgcaa gccccatatc gtatctagcc agagaagaag gagatcctaa tctcattctg
     2341 tcctttgctt cttctagact aaaggcacgt ctttctgctc tgtttata
//
LOCUS       DASQSJ010000371         5279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_66870, whole genome shotgun sequence.
ACCESSION   DASQSJ010000371 DASQSJ010000000
VERSION     DASQSJ010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5279
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66870"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VE223_07335"
     CDS             <1..187
                     /locus_tag="VE223_07335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21442.1"
                     /translation="RINGVAPTAIVCTNKADITTASGCAISSIPVVDMLEKTLSCKLS
                     SQMNISVDADNGVLAVI"
     gene            476..697
                     /locus_tag="VE223_07340"
     CDS             476..697
                     /locus_tag="VE223_07340"
                     /inference="COORDINATES: protein motif:HMM:NF019876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HZC21443.1"
                     /translation="MANFCPECGGNLEFDSISKNFICKSCGLFASREKIDELRDKAEE
                     ESIDKKSRTHDAYLEWWQTSKKDKQKSTR"
     gene            complement(869..1378)
                     /locus_tag="VE223_07345"
     CDS             complement(869..1378)
                     /locus_tag="VE223_07345"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HZC21444.1"
                     /translation="MQINDLDGLLDDVNLKIIDILSRDASLPFVEVAKQIGISDATVH
                     IRVRRLLAAGVINKFTISVDHDLLGYDHLAFMGINVEAGLADEAIRRLSNLEEVLEIH
                     EMHGKFDLLLKIRAKDLEQMRDIVVNKIRVLPNILEIELMTVLKSRKEEQIVSLKKDI
                     LYKDGALIS"
     gene            1620..2558
                     /locus_tag="VE223_07350"
     CDS             1620..2558
                     /locus_tag="VE223_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HZC21445.1"
                     /translation="MSSQSPSVCNKCHTEPSIYHRSYSGEYLCKKCFLYSIEKKTSKT
                     ISKYSMLDYNDRLAVGVSGGKDSLALLYIIKKRFDKLGRSNLIAITIDEGIEGYRNEA
                     LQITRDFCSNLKVENKILRYKDIFGIDMDKAMKIRPNEKMSSCSICGTFRRRAIDMAA
                     ESVGANVVATAHNLDDHLQTFMINFLAGDIERIGWNYPEPIQYGNSNLKKIKPFIEIY
                     EQEIVFYALQRKIPFQSEECPYMNESIRTELRLFLNKLEKKHPGIKYNAYNSMTNISK
                     GLKSSPKTRNANRCSICERYSSGNVCSVCKMSEILK"
     gene            2677..3633
                     /locus_tag="VE223_07355"
     CDS             2677..3633
                     /locus_tag="VE223_07355"
                     /inference="COORDINATES: protein motif:HMM:NF013347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HZC21446.1"
                     /translation="MPINPRYFCIVGGKYPKLAREEITALLKTYGHLKIEYSMDNLVV
                     AQGECKINKVAQRAVYTKSIAREIQTEEDYSVLRGKTFSCFGTNDVELRKRVVEDLKK
                     KTGAKVLLENPDCQIVIVSKSTGNNSSASFTNLIGIRIPQPRIDWTKRLSQRKFLHPS
                     MLEPRLCRAMVNLAQVKEGDTIVDPFCGTGGILVEAQELNIRTAGYDIQKKMCLGAKQ
                     NMVENIAICDSLHIPLKPFVADAIITDIPYGRSTKIIRGQTTQQILNDLIDNTSVHKM
                     VILCQKDDEEMIMKSRANLKSSICHLYRHKSLTRSMVTITRW"
     gene            3627..4556
                     /gene="rnz"
                     /locus_tag="VE223_07360"
     CDS             3627..4556
                     /gene="rnz"
                     /locus_tag="VE223_07360"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HZC21447.1"
                     /translation="MVNMRLIFLGTSAAAPTPNRGLSSIALVRGSELILFDAGEGMQR
                     NFIKAGLGMNRKMKIFITHMHADHCVGLLGLLQTMSLQGRQRHVDIYGQPQVAEFIKE
                     NIRIINFRLTFDINIHIINGEGTVVKEKDYQVSCSDAFHSVPAYSYCLTEFDRPGKFN
                     IIEAKRLGIPEGELYHKLQEGNDIVVEGKTISSNQIIGPRRKGRKIGISGDTRPTDKL
                     KSFFKDCDLLVFESTFSHDKCEQAIESFHSTAKEAASLAKASSVRKLYLTHFSARYHE
                     TSKLVKEAAEMHQSVEAAEDLKIVEIPYEDDKQ"
     gene            complement(5042..5230)
                     /locus_tag="VE223_07365"
     CDS             complement(5042..5230)
                     /locus_tag="VE223_07365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21448.1"
                     /translation="MECSHVKFSSVSGIVLHINTHTKQCQVNAMIGGGGGARGVAAAA
                     DHHKPVGNCHQIILITDN"
BASE COUNT         1862 a          928 c         1008 g         1481 t
ORIGIN      
        1 aaggattaat ggagttgcac ctacagcaat agtatgcacc aacaaggcgg atataacgac
       61 agcatctggc tgtgcaattt caagcattcc agttgtagac atgttagaaa agacattgtc
      121 gtgtaagtta agttctcaaa tgaatatcag tgtagatgca gacaacggcg tactagcagt
      181 aatataatag tttaaatttt tgagtataca gagtattttc gtctcggtgg tggcgttaga
      241 tgggcgaact gaccgcttgt taatggtgga atgaagatca aagaccacgc accgggattt
      301 tagcgaaagc agtcttgtct agcccttgcg aaaaggattc tttggacaaa aagaatcgtt
      361 ttgcaataat actcttcatg ataaacagaa aaatctatta tttattaaat ataatatgta
      421 aaattatgtt acttttcata atgcttttat taggaacatt gggatcacaa aatgattggc
      481 aaatttttgt ccagaatgtg gcggtaattt ggaatttgat tctattagta agaatttcat
      541 atgtaagagc tgcggtcttt ttgcctctag agaaaaaatc gatgaattgc gcgataaggc
      601 tgaagaggaa tccatagaca aaaaaagcag gacacatgat gcatatctgg aatggtggca
      661 gacttcaaag aaagacaaac aaaagtcaac acgttgaaga agacaagtaa taaataagtt
      721 caaataaata aagaaataat cagcaagtta acgtgaggat cttatcctgt ccttttaata
      781 tatagtggcg actatcgtct atagcaccat gttttacttt tcagaagaaa attggttacg
      841 tctacgttca aatttaatgt ccctttttct aagagattaa cgcgccatcc ttgtataaaa
      901 tatctttctt tagagaaact atttgctctt cctttctgga tttcaaaaca gtcatcaact
      961 ctatttccag aatatttggt aatacacgta tcttatttac cacaatgtct ctcatctgct
     1021 ccaaatcttt agctcgaatt tttaaaagta ggtcaaactt gccatgcatt tcatggattt
     1081 ctaaaacttc ttccagattt gacaaacgcc taatggcctc atctgctaga cctgcctcta
     1141 catttatccc cataaaagcc aagtggtcat atccaagaag gtcatgatcg acagagatag
     1201 taaatttgtt tataacgcct gctgcaagta gccggcgaac tctgatatga accgtggcat
     1261 cagatatccc aatttgttta gctacttcaa caaagggtaa cgacgcatct ctacttaaaa
     1321 tgtctattat cttgagatta acatcatcta ataacccgtc aagatcatta atctgcacaa
     1381 cgggtgtatg gtattaacct ataaatgctt ttactacaga aggatcttta taattttgtt
     1441 taaaaaatac taccagatta tcaagacagc aaaccgatga agatgtagac aagttatttt
     1501 tagcagacac caataaatta ccatgttgtc aatgtattgt aactactgat ggtgctatta
     1561 agtacaagta atgataatat tattattgac agaatctata agaagtcacc atattggttt
     1621 tgtcatcgca atcaccatca gtttgtaata aatgtcatac tgaaccaagc atctaccata
     1681 gatcatattc tggagaatac ctgtgcaaaa agtgctttct atattctata gagaaaaaaa
     1741 cctcaaaaac catatccaag tattcaatgc tcgactacaa cgacagattg gcagttggag
     1801 tttctggtgg aaaggacagt ttggcgttgt tgtatattat caagaaacgc tttgacaaac
     1861 tcggtcggtc taacctaatt gcaattacaa tagacgaagg tattgagggc tatcgaaatg
     1921 aagctctaca aataactagg gatttttgct caaatcttaa agtagaaaat aaaattctaa
     1981 ggtacaagga tatttttgga atagatatgg acaaagcaat gaaaattaga cctaatgaaa
     2041 aaatgagttc gtgctcaata tgtggcacct ttcgtagaag agccatagat atggctgcag
     2101 aatctgttgg agcaaacgtt gttgcaacag cacataattt agacgaccat ttgcaaacat
     2161 tcatgatcaa ttttcttgct ggagacattg agaggatcgg atggaactat ccagaaccta
     2221 tccaatatgg taacagtaat ttaaaaaaga taaaaccttt cattgaaatt tacgagcaag
     2281 agatagtgtt ctatgcatta cagcgaaaaa ttccatttca atcagaagaa tgtccgtaca
     2341 tgaacgagag cataaggact gagcttcgtc tatttctgaa caagcttgaa aaaaaacacc
     2401 cgggcattaa atataatgct tacaattcaa tgacaaacat ctctaagggc ttgaaatcat
     2461 cgcccaagac aaggaatgct aacaggtgtt cgatctgtga aagatattct agtggaaacg
     2521 tttgttcagt atgtaagatg tctgaaattc taaaataaaa tggcaaataa tgaatctccg
     2581 ctgaaggttt ttaaacactg ctgaggcaga caggtcggct aggtccgtta caatgaaatt
     2641 tctttcaata taaattaaca tacagaaagt ctaacaatgc caattaaccc aagatatttt
     2701 tgtattgtcg gcggcaaata tcctaagctt gcgagagaag aaattactgc actccttaaa
     2761 acatatgggc atttgaaaat cgagtattct atggacaatt tagtggttgc tcaaggagaa
     2821 tgtaaaatca ataaggtagc acaacgggca gtatatacaa aatccattgc ccgcgaaatt
     2881 caaactgagg aggattactc tgttctaaga ggcaaaacat tttcctgttt tggaaccaat
     2941 gacgtagaac tccgtaaaag agtggtagag gacctaaaga aaaagacagg ggcaaaagta
     3001 ctactagaaa atccagattg ccaaatagtt atagtttcaa aaagtaccgg taataatagt
     3061 tcagcttctt ttaccaatct aattggcatt agaatcccac agccaagaat cgattggaca
     3121 aaaaggcttt cacagagaaa attcttgcat ccatctatgt tagagccaag attgtgcaga
     3181 gcaatggtta accttgcaca agtaaaagaa ggcgatacca tagtagatcc attttgtgga
     3241 accggcggta ttttagttga agcacaggag cttaatatac gaactgctgg ctatgatatc
     3301 caaaaaaaga tgtgtttggg tgcaaaacaa aacatggttg aaaacattgc tatttgtgat
     3361 tcactacata taccattgaa accatttgta gccgatgcaa taataacaga tattccatat
     3421 ggacgatcca ctaaaatcat cagaggacaa acaacgcaac agatacttaa cgatttaatt
     3481 gataacacaa gtgtgcataa gatggttatc ctctgtcaga aagatgacga ggagatgata
     3541 atgaaatcaa gagcaaatct aaagagtagt atttgtcatt tatatcgaca caagagctta
     3601 acgcgcagca tggtgacaat aacgagatgg taaacatgcg attgatattc ctaggaacat
     3661 ctgctgcagc tcctacccct aatcgtggac tgtcatcaat tgcattagtg agaggttccg
     3721 aattaatatt atttgatgca ggtgaaggta tgcagcgaaa tttcatcaag gcaggtttag
     3781 gtatgaacag aaaaatgaaa attttcatta ctcacatgca tgcggaccat tgtgtaggac
     3841 tgcttggact tttgcaaaca atgtccttac aaggaagaca gagacatgta gacatttatg
     3901 gtcagcccca agtggctgaa tttattaaag aaaatatacg aataataaac ttcaggctaa
     3961 cctttgatat taatattcat ataatcaatg gcgagggaac cgtagtaaaa gagaaagact
     4021 accaggttag ttgcagtgat gccttccatt cggtccctgc atattcatat tgtcttacgg
     4081 aatttgatag accaggaaaa tttaatatta tcgaagctaa aagattggga atcccggaag
     4141 gagagttata ccataagctg caggaaggaa atgatatagt tgttgagggc aaaaccatta
     4201 gttcaaacca gataatcggg cctcgcagga aaggaagaaa aattggaata tccggtgata
     4261 caaggccaac cgataaatta aaatcttttt tcaaagattg cgatctacta gtcttcgaat
     4321 cgacatttag ccacgataaa tgtgaacaag caattgaaag ttttcattca accgctaagg
     4381 aagcagcatc tttagcaaag gcatcttctg ttagaaaact gtacttaact cactttagtg
     4441 ctagatatca tgaaacttcc aagttggtga aagaggcagc agagatgcac caaagtgtag
     4501 aagctgcaga agatctcaaa atagtggaaa tcccgtacga ggacgataag caataacttt
     4561 agataaagcg caagagcatg tagtggaaga ttgatctaca agttgccatc tccttccaat
     4621 gaatttcagt ctaacacacg cagttcaatt gcagcatata tacatgctaa agagacatca
     4681 tgtcaaggct tatataacta aacctcgaaa taaatgaagt tgaactgcgt gagactaaca
     4741 atttttagca gcatagaagg aatacattgt catattgaac agaccatatt tgtttaagaa
     4801 tacaatattt ttgtagagat tttttgggga atctcttcga tgagacaaga gcaacaaaaa
     4861 cctattaagc caagaaagaa ctacgactat aacaaaccaa taggtaaatg catagtatgc
     4921 tatactttat ccgaatggca ttgttatgtt tgtaacaacg acttctgcga aactcatttc
     4981 caagatcata agcaaaaaaa tctatgtact aaggcgagta cataaagctc aacatgagaa
     5041 gttaattatc cgttattaaa attatttgat ggcaattgcc gacaggcttg tgatgatctg
     5101 ctgctgccgc cacccctctc gctccaccac caccaccgat catagcatta acttggcatt
     5161 gtttagtatg agtattaata tgtaaaacta tcccactgac cgaactgaac tttacatgcg
     5221 aacattccaa cttctagagt gtataattga acgtaacgca cgcactaaag cacgtaaag
//
LOCUS       DASQSJ010000372         2845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_583045, whole genome shotgun sequence.
ACCESSION   DASQSJ010000372 DASQSJ010000000
VERSION     DASQSJ010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_583045"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VE223_07370"
     CDS             <1..282
                     /locus_tag="VE223_07370"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HZC21449.1"
                     /translation="EIEPLIDMITSDKEVKVVVELPGVNKENIKVNSYDTSVEISANT
                     SDRKYRRIVDLPPEADTQVAKCNYKNGILEIVFNKKQESKPKGKEISIE"
     gene            343..2691
                     /locus_tag="VE223_07375"
     CDS             343..2691
                     /locus_tag="VE223_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018193003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HZC21450.1"
                     /translation="MESNHVDDNRDSDSSSSTTSSSSSGSSSSRSNSKPTINLKVAEV
                     AEQRDVGRKIARIDPEIAERLNVSTGDALELSSLGKKSTVLSWPARESDRGKGLIRLD
                     GYTRNKLDVGINDTVDVRKSESKDAKSITFAPTEPLRIVGAEEYLAEYLNGALMTKGD
                     TVPISVMGQRIDLVVISTSPSGPVIINESTKITVSEENAKAVQISREGGVPSITYEDI
                     GGFRDEVARVREMIELPLRHPELFKRLGVEAPKGVLLHGPPGTGKTLLAKAVANETNA
                     NFYTIGGPEIMSKYHGESEERLRNVFQQAEKNAPSIIFIDEIDSIAPKREEVSGEVER
                     RIVAQLLSSMDGMSSRGKVVVIGATNRINAIDPALRRPGRFDREIELGVPDRNGRLEI
                     LEIHTRGMPISKDVNLQKLADISHGFVGADLQSLSKEAAMRALRRIIPEIDLTSESIP
                     ADTLKKIIVTMQDFMDVIKEMEPSAMREVFVEIPDVKWEDIGGHGSIKQELQEAVEWP
                     LKYQGVFTYADATPPKGILLYGPPGTGKTLMAKAAANESEANFISIKGPELLSKWVGE
                     SEKGVREVFRKARQAAPCIIFFDEMDAIAPIRGSNGDSHVTERVISQLLTELDGLEVL
                     TNVMVIAATNRPDIIDPALLRPGRFDRLLYVPPPDRDSRIQIIKIHIKKKPLAEEINI
                     EELANHTDGYTGADIASLMSTAVMLALRDHITKYKDPKEADNHAKELKVNMRHLEEAM
                     KKIRPLSTQELNMYKTISEQFGKSGSQSLKDTFIQSRGSAIT"
BASE COUNT         1016 a          476 c          624 g          729 t
ORIGIN      
        1 gaaatagaac ctttgataga tatgattacc tctgataaag aagtcaaagt cgtagtagag
       61 ctacccggag ttaataaaga gaacattaag gtaaactcct atgatacctc agtagaaata
      121 tcggctaata cttcagacag aaagtatcgg cgaatagttg atttaccacc agaagctgat
      181 acccaggttg ctaaatgtaa ttataagaat ggaatactcg aaattgtgtt taacaaaaaa
      241 caagaatcaa agccaaaggg aaaggagata agcatagaat gaaaattttt tgcaaattgt
      301 tatttacgat gacaaataaa acatacaggt gacatttata acatggaatc aaatcatgta
      361 gatgataata gagatagtga tagtagtagt agcactacta gtagtagcag tagtggcagt
      421 agtagtagcc gcagtaattc taaaccaaca ataaatctta aagttgcgga ggtagcagag
      481 caacgtgacg taggaagaaa gattgctcgt attgatccgg agatagctga gcgtctgaat
      541 gtgtctaccg gtgatgcttt agaattatca tcacttggaa agaaaagcac tgtgttgagc
      601 tggccagctc gggaaagtga tagggggaag ggtttgattc ggcttgatgg ctatacaaga
      661 aacaaacttg atgttggcat caatgataca gtagatgtta gaaaatcaga gtccaaggat
      721 gcaaaaagta taacatttgc ccctaccgaa ccacttagaa tagttggtgc agaagaatat
      781 cttgcagaat atctaaatgg agcacttatg accaagggag atacagtacc tataagcgtc
      841 atgggtcaaa gaatagacct tgtggtgatt tctacaagtc cttctgggcc tgttataatt
      901 aacgagtcta caaaaattac ggtttctgaa gaaaacgcca aagcagtaca aatatcaaga
      961 gaaggcggcg ttccatctat aacctatgag gatattggcg gatttagaga tgaagttgcc
     1021 cgtgtgagag aaatgataga gcttccttta aggcatccag aattattcaa acggttagga
     1081 gtagaagctc cgaaaggagt tctgctacac ggcccaccag gaacaggaaa gacactattg
     1141 gcaaaggcag tagcaaatga aactaatgcc aacttctaca caataggtgg acctgaaata
     1201 atgagcaaat accatggaga gagtgaggag agattaagga acgtattcca acaagcagaa
     1261 aagaatgcac cttcaattat attcattgac gagatagact ctattgctcc aaagcgggag
     1321 gaagtatcgg gcgaggtaga aagaagaata gttgctcaat tattgtcatc tatggatgga
     1381 atgtcttcaa gaggaaaagt agtagtgata ggagctacaa atagaataaa tgctatcgat
     1441 cccgcattac gccgtccagg tagatttgat agagaaattg aattaggtgt tccagataga
     1501 aacgggaggt tggaaatttt agagatacat actagaggaa tgcccatatc caaagacgtt
     1561 aatttacaaa agcttgctga tatctctcac ggttttgttg gcgcagatct acagtcttta
     1621 tctaaagaag ctgcaatgcg agctttaaga agaataattc ctgaaataga tttaacgtct
     1681 gaaagcatac ccgcagacac tttaaagaaa atcatcgtca caatgcaaga ctttatggat
     1741 gtcattaaag agatggaacc ttctgcaatg agagaggtat tcgttgagat ccctgatgtg
     1801 aaatgggaag atataggagg acatggatcc ataaagcaag agttacaaga agcagtagaa
     1861 tggcctctca aatatcaagg ggtctttaca tatgctgacg ccacacctcc aaagggcata
     1921 ttactctatg gtcctcctgg aacaggaaag actttaatgg ccaaggccgc ggcaaatgaa
     1981 agcgaagcta acttcattag tattaaaggt ccagaactcc tttcaaaatg ggttggtgag
     2041 tcagaaaaag gagtgagaga agtctttagg aaagccagac aggcagctcc ttgcatcata
     2101 ttctttgatg aaatggatgc catagcacct ataagaggaa gtaatgggga ttctcatgtt
     2161 actgaaagag tgatcagcca attgttgact gaattagatg ggcttgaagt attaactaat
     2221 gtgatggtaa tagctgccac caataggcct gacattatcg atccggcatt actaagacca
     2281 gggagatttg ataggctact ttatgtccca cctcctgatc gagattcaag gatacagata
     2341 ataaaaatcc atatcaagaa aaagccatta gctgaagaaa ttaatattga agaattagca
     2401 aaccatactg atggttatac aggtgcagat atcgcttctc ttatgtcaac agcggtcatg
     2461 ctagccttac gcgatcatat caccaagtac aaagacccga aggaagctga taatcatgcg
     2521 aaggaattaa aagtaaatat gagacacctt gaagaagcta tgaaaaagat aagaccactg
     2581 tcaactcaag agcttaatat gtataaaact atatccgaac aattcggaaa atctggcagt
     2641 caatcactga aggatacatt tatacaatca agaggaagtg ctataaccta gagcttttgg
     2701 taaataacac acggtaataa tataaataat aatcatcaca tctacatcat tagttgataa
     2761 ggttattgtt ttattattat tatgatcatc ctttatttct tatgacgcaa ctctcatttt
     2821 gatcacttct aatttattac tcttc
//
LOCUS       DASQSJ010000373         2192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_301193, whole genome shotgun sequence.
ACCESSION   DASQSJ010000373 DASQSJ010000000
VERSION     DASQSJ010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301193"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VE223_07380"
     CDS             complement(<1..471)
                     /locus_tag="VE223_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase sliding clamp"
                     /protein_id="HZC21451.1"
                     /translation="MVFLAKTKSPDEWKAVTSAISTLVDEATFEATKEGVSFRGMDPS
                     HVALIDIHWPNSAFQTYDCDAAIKFGVRVDEFSKLVRRADKKDAMEVTVGNDSMLHIK
                     ISNSYTKEYKMRLIEGSSNSTPLPKLNFNSKVVLTASAFDKILSDVQVVSEYISI"
     gene            complement(673..1014)
                     /locus_tag="VE223_07385"
     CDS             complement(673..1014)
                     /locus_tag="VE223_07385"
                     /inference="COORDINATES: protein motif:HMM:TIGR01384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor S"
                     /protein_id="HZC21452.1"
                     /translation="MRFCPNCETRMKPRIEQGVVLCPKCGFTAEKDQHEALSNTKKLM
                     TSPENNSGSSLKIMDSDNVPSALPTTTVDCPKCGNNVAFWWMLQTRSADEATTQFYRC
                     TGCGHTWRNYS"
     gene            complement(1031..1306)
                     /locus_tag="VE223_07390"
     CDS             complement(1031..1306)
                     /locus_tag="VE223_07390"
                     /inference="COORDINATES: protein motif:HMM:NF025040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoL/Rpb11 RNA polymerase subunit family
                     protein"
                     /protein_id="HZC21453.1"
                     /translation="MLAEIADIKDNELELKLQEEDISIMYIIQHELLKQPNVEFAGVM
                     LKHPLIKDYVLRVLTTIDPIEAVQGASLSASKYAEDLASTLKEKLKK"
     gene            1389..1871
                     /locus_tag="VE223_07395"
     CDS             1389..1871
                     /locus_tag="VE223_07395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21454.1"
                     /translation="MSKSQDKLKVDEILILNLSFKITGEIREVFDQNIWERAYNRHDN
                     AFRMTIEVCLKSGRKTILPLKFIRKAVMFWTRNPKIPYRIWISIIKDDQPFYPLNVDE
                     AKALLFDVKKVIEINGNNLKSGRHNLVANIKVRWGKHSYTEPAVISAHSNTAEVLCMK
                     "
BASE COUNT          710 a          400 c          388 g          694 t
ORIGIN      
        1 aattgaaata tattcagaaa ctacctgaac atctgagaga attttatcga atgcactcgc
       61 agtcaatact accttagaat tgaaattcaa ctttggtaat ggagtagaat ttgaggaacc
      121 ctcaatcagt ctcattttat attcttttgt ataactattg gaaattttga tatggagcat
      181 actatcattt ccaactgtaa cttccattgc atctttctta tcagcgcgtc gtacaagttt
      241 tgagaattca tctactctta ctccgaattt tatcgctgca tcacaatcat atgtttggaa
      301 tgcagagttt ggccagtgaa tatctataag cgctacgtgt gatggatcca ttcctctaaa
      361 agatacaccc tctttagtgg cttcgaatgt tgcctcatct acaagagttg aaattgcaga
      421 tgtcacagct ttccactcat caggcgactt tgtcttagcc aggaatacca aactatctca
      481 atgatgtgcc taacatttac agattttaaa cattactatc tttgattagt tgaatggtga
      541 tgtcttcctc ggaatactga tctttggtat ttcacgacat tgtgctatca acacaatttt
      601 taatatccag aagaaaacaa tgccaaatcg aatttatatc attagtgaag gaaacgggga
      661 aaagaaagaa agtcaagagt aatttctcca tgtgtgccca catccagtac atcgataaaa
      721 ttgtgtagtg gcttcatcgg ctgatcttgt ttgcaacatc caccagaatg caacattatt
      781 tccacatttt gggcagtcaa cggttgttgt tggtaaggca ctaggaacat tatccgaatc
      841 cataatttta agcgagcttc cagagttatt ttccggcgat gtcattaatt tctttgtgtt
      901 agataaagct tcatgttggt ctttttctgc tgtaaaacca cactttggac ataacacaac
      961 accttgttca atcctaggct tcattcgtgt ctcgcaatta ggacaaaacc tcaaaaacga
     1021 cgacctctta tcatttcttc aatttttctt ttagtgtgct cgccaaatct tcagcatatt
     1081 ttgatgcaga gagggaggca ccctgaaccg cttctattgg atcaatcgtc gttaaaaccc
     1141 ggagcacata atccttaatg agaggatgct taagcattac acctgcaaat tcaacatttg
     1201 gttgctttaa aagctcatgc tgtatgatgt acataattga aatgtcctcc tcctgaagtt
     1261 tcaattcaag ttcgttgtct tttatgtctg caatctccgc aagcataata cagacaacta
     1321 cttattgagg atataaatta taccatatgt ctaaattctt aatggtcagt atcattgagg
     1381 atgctgtatt gtctaaatct caggataaac tcaaagtaga tgaaatcctc atattaaatc
     1441 tgagcttcaa aataactgga gaaattagag aagtttttga ccagaacatt tgggaaaggg
     1501 catacaatag acatgataat gcctttagaa tgactatcga agtatgtttg aaatctggga
     1561 gaaaaacaat acttccgtta aaattcatca ggaaagcagt aatgttctgg acacgaaatc
     1621 ctaaaattcc atatagaatc tggatctcaa ttattaaaga cgatcagcct ttttatccat
     1681 tgaacgttga cgaagcgaaa gcactgcttt ttgacgttaa aaaagtaatt gaaataaatg
     1741 gaaataatct gaaatctggg agacacaatc tagttgctaa cattaaagtt agatggggta
     1801 aacatagtta tactgaaccc gctgtgatct ctgcacattc aaatactgca gaagttcttt
     1861 gtatgaaata atataatgca acctaaggac attcaaagga atttttaatg ggaaaaacag
     1921 gtactgatag cataacaaaa aattatggtc gattttgagg tcctagaaag gttatatcta
     1981 tctactaccc atccttgttt ggtatcaact tattactcta aatagatcct ttgtcaaatg
     2041 atatagatat ggctaagttt gatggaataa aaggtcagga gctccttgac gttgaagaaa
     2101 gtaacgaaga aattacattg attttcaagg acaataggtt ccttttcgtc aaagtgcaga
     2161 acggaaaatt aatttcagac tctgtaccag ag
//
LOCUS       DASQSJ010000374         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_383358, whole genome shotgun sequence.
ACCESSION   DASQSJ010000374 DASQSJ010000000
VERSION     DASQSJ010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383358"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            312..467
                     /locus_tag="VE223_07400"
     CDS             312..467
                     /locus_tag="VE223_07400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21455.1"
                     /translation="MQIKNKNMITIAIIVLGATLGIALIATYNPIGQAKVETNNNLTA
                     ADSYRTS"
     gene            1080..1532
                     /locus_tag="VE223_07405"
     CDS             1080..1532
                     /locus_tag="VE223_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21456.1"
                     /translation="MSQLTAGIAMGTMAALLIFMAATTNSAFAQQANPQGAPNPKAIQ
                     QQNLNRQLFTTGTAKIGNVTLRLAGGVLITLRLGGGVLVTPLTCINVSGNLSGIPLLG
                     GLNQSLLTQANQALKQHPPNVCFSKSDAMRIRAEVMHQPGPMGTMGGR"
     gene            1634..1780
                     /locus_tag="VE223_07410"
     CDS             1634..1780
                     /locus_tag="VE223_07410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21457.1"
                     /translation="MEDPNALSNQNNDYLQTALGNVYSTTSNATVKNQKMMNGTPPMT
                     ENNT"
     gene            complement(2076..>2379)
                     /locus_tag="VE223_07415"
     CDS             complement(2076..>2379)
                     /locus_tag="VE223_07415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21458.1"
                     /translation="GVVKGVNFSANGTVFIVPRSNGSADLIGHAVISTVDGEKGTYKF
                     YSLGHTDANGTTRDNGAVFFRTNSSGKLSAINDLVIVFKDQMDKAGNSMTMGWEWK"
BASE COUNT          830 a          452 c          414 g          683 t
ORIGIN      
        1 ttacaacact tttgtaaaag aacttcagca aattggagaa cacatgacta aacagaaata
       61 agataaaaat ttttttctct cgtctgttat cgatcaaata acagcacatt tcttatagag
      121 agcgtacccg tcagatacag aagaagacat aaagagactc acatctatac atcaaaagta
      181 tcgcaaaact ggcaatagag aatacaattg acaactatgt atatatcata cattctactg
      241 tgtatagaca agacaccctt aaaagagaag atagaacttg acaaaattga ggaaggtgag
      301 aacgtaaaaa aatgcaaata aaaaataaaa atatgataac aatcgcaatt attgtactgg
      361 gtgcaacatt aggcattgct ttaatcgcaa cttacaatcc tattggacaa gcaaaagtgg
      421 aaaccaataa taatctaaca gcagcagata gttatcgcac atcgtaactc atccttatat
      481 tgtatgaact gggtgttaat cggttacgac acgccatgat ggatgtccct aatgatgtag
      541 tcaatcacag gatatactag tttcatgttt ttcagaaacc gatatacgaa taatggaaaa
      601 tgattacttg tttaaaaatc caagaatcaa ggtacgtcag attagctaat accatgttac
      661 gtgtcctaag aaatgctagg ataccaatgt ttcttcaccg aaagagcaat cacatattca
      721 cagtctggca gcttgtggta ttattggtgt tacgccagta tgaaggaaag agttatcgcc
      781 tgtttgtaga agattggcta gtgaagcatt ttatctgaga atgtttcttc acgtatacca
      841 cattatacta ctcttcaaaa gtttgcagca agaatagatg gtagtatatt ggctaagata
      901 atctcctcat ttatactgtt actgaactat atccattggt tattcatggt atagattcat
      961 caggattcaa aataaccaat gcttctcagt attatataga caaagctaaa ctgcgtaata
     1021 agtatctcaa gatcaaaaat agaactattt attaattaaa tgtctatcat tgatttttga
     1081 tgtctcaact aaccgcaggg atagcaatgg gtactatggc agccctactg attttcatgg
     1141 cagcaacaac aaattctgca tttgcgcaac aggcaaatcc acaaggcgca ccaaatccaa
     1201 aagccatcca acaacaaaat ctgaaccgac aattatttac gactggtacc gcaaaaatcg
     1261 gtaatgtcac tctacgattg gcaggagggg ttcttatcac tctacgattg ggaggagggg
     1321 ttcttgtaac acccctaaca tgtataaatg taagcggaaa tctgtctggg ataccgttac
     1381 taggcggatt gaatcaatcg ctgttaacac aagctaatca agcgctgaaa caacatccac
     1441 ctaatgtatg tttctctaaa agcgatgcaa tgcgaattag agccgaagtg atgcatcagc
     1501 cagggcctat gggcactatg ggtggcagat gaaaacagat caatcattga caatagatag
     1561 atagctattg gcctttgact taaatcacaa gaagaataac ttattgtttc cttaatcttt
     1621 ctcttatttt ttcatggaag atccaaatgc gctgagcaat cagaacaacg attatttaca
     1681 aactgcatta gggaatgtct attcaacaac aagtaatgct actgtaaaga atcagaagat
     1741 gatgaatgga acaccaccta tgaccgagaa caacacctaa gaactgaaca tctatttgat
     1801 gtattctctg taggtgtcaa ccaactggct aagacagcat tttataatcc tgatttagct
     1861 gaaataggat aagaatgagg aaatcaagag tagagtgaag tattgacatg cgttttgata
     1921 tatgtaagct tgattacaaa gacacctatt tttagtactt tgcattacac gtaagtcaat
     1981 agtcaaattg cccaggccaa gtatacacaa atgatagaaa ttggcaaaag tatgaacagg
     2041 gacttatgcc ccagcctcaa ttacttacct ttttctcatt tccattccca gcccatagtc
     2101 atactatttc ctgctttgtc catttggtct ttgaatacta ttaccaaatc attaatagca
     2161 ctaagtttac cacttgagtt tgtacggaaa aatacagcac cattatctct tgttgttcca
     2221 ttagcatcag tatgtcctaa agagtaaaat ttgtaagttc ccttttctcc atcaacagta
     2281 cttataaccg catgtccgat tagatctgca gatccattac ttctaggtac gataaagaca
     2341 gttccattag ctgaaaaatt cacacctttt accactcca
//
LOCUS       DASQSJ010000375         8203 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_583546, whole genome shotgun sequence.
ACCESSION   DASQSJ010000375 DASQSJ010000000
VERSION     DASQSJ010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8203
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_583546"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VE223_07420"
     CDS             <1..191
                     /locus_tag="VE223_07420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21459.1"
                     /translation="LSKEKLSEYGVNQNDIVVIEVPEDVPQGAIMVTIWPHYLSVAKV
                     KRLREGSIYAPQLFNIDL"
     gene            complement(1559..2068)
                     /locus_tag="VE223_07425"
     CDS             complement(1559..2068)
                     /locus_tag="VE223_07425"
                     /inference="COORDINATES: protein motif:HMM:NF015952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-dependent dephospho-CoA kinase family
                     protein"
                     /protein_id="HZC21460.1"
                     /translation="MPLTCSDIHILKEPFGILIKDEDLTKEKIKGILYNAKKVVSVGD
                     STTDRLISYDILPHISVIDNKERRRKRKGSLHNQNASIHELHCTNPAGGICREAVSIL
                     HKALRIPSPVKVVVYGEEDMLALPIIAAAPYRTFVLYGQPSEGIVVVTITPAMRKKAK
                     DIIDKIGIT"
     gene            complement(2052..3182)
                     /locus_tag="VE223_07430"
     CDS             complement(2052..3182)
                     /locus_tag="VE223_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HZC21461.1"
                     /translation="MVSVDAVLSALKKVVDPELHKDIVSMGMIKELAINNGKVAFTLE
                     LTTPACPFNSDIEQDVRNTIANLGVKELELKVTARVMEGRAISMDELLPGVKNILAVA
                     SGKGGVGKTTVSVNLAMALAKTGAKVGLLDADIYGPSVPLMLGLKASPEVINNKIQPP
                     ISEGVKVISMGFFYEQSQQAGIYRGPIISGIVKQFLTDVNWGDLDYLIIDLPPGTGDA
                     PLTIAQTIPITGILIVTTPQDVAMNVAVKSIGMFNKLNVPIVGVIENMSYLECPHCKE
                     HTHIFGKGGGQLVSEQFKIPFIGEIPLHPQIMTGSDIGKSVIISDPDSIHSYVFSKVA
                     KTIAGRISVIAAEMRVQQEAESDQSEAGDSFSQAETHNAPHL"
     gene            complement(3315..4238)
                     /locus_tag="VE223_07435"
     CDS             complement(3315..4238)
                     /locus_tag="VE223_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HZC21462.1"
                     /translation="MKQEPSAPLRVSNEVCGLCDSRALIFDAETSETVCSSCGMVIHD
                     NNESLGPEWRIYSGDDIESKSRTGMPTSLAFHDMGLSTFISYSNVDANGAAISPEQMS
                     KVQRMRRWNKISSNNRSYHRNLKNAFAILSTIKDKLSLNDALIEKSAYNYRKALDRRI
                     IKGRSIRALVVASVYAACRELNIPRTLDEIAETANTDSIFAGKCYRLLVRHLKLHLPV
                     IDSNVYLAKIANKAKVSEKTYRRALQMLTTIKENPISHGKDPNALAVAVLYAACIKES
                     EKVSQAQIAVAGDTSIVTLRKRFQDVKKIFP"
     gene            4393..4959
                     /locus_tag="VE223_07440"
     CDS             4393..4959
                     /locus_tag="VE223_07440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21463.1"
                     /translation="MIPNVTGDARSATVTRSFRFDIDLSKILDEEAERMGVSVNALVG
                     IILRRYSEFTRYLSKIDMIVINRELLISLLETRDCEYLYKLGMKLGETVPVDTIMFWK
                     KTLTEQSVLEYIEKIICRYGHLGTYDEVSQTNTRTIVIRHRLGRNGSKFFEGYLKATL
                     KNTIAKDAIFDVTDSSVKFEIKGVITNA"
     gene            5011..5607
                     /locus_tag="VE223_07445"
     CDS             5011..5607
                     /locus_tag="VE223_07445"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020265771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HZC21464.1"
                     /translation="MFARVYMSDVVRIPPNRLTNSLKDTAIGILKEKYESMISPELGY
                     VVMIIDATANTVGKLVAGDGATYHRVTFEALTFYPKLQEVVEGEVVEITDFGAFVRIG
                     PTDALLHLSQITDDYLRSDVKQGVIIANQSAKSLRIGSRIRARVTAVSLGKGAAMGKI
                     GITCRQPFLGASEWIEQEIKKAKQPPTPATTKKGGGSK"
     gene            5608..5796
                     /gene="spt4"
                     /locus_tag="VE223_07450"
     CDS             5608..5796
                     /gene="spt4"
                     /locus_tag="VE223_07450"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HZC21465.1"
                     /translation="MAREVACKKCKAVTIGKVCPICKATDLTLDWSGIIIIFDALKSE
                     IAATLDISIPHKYAHKVS"
     gene            5808..6686
                     /gene="nadC"
                     /locus_tag="VE223_07455"
     CDS             5808..6686
                     /gene="nadC"
                     /locus_tag="VE223_07455"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HZC21466.1"
                     /translation="MENLEAYFNVRESLINFLIEDIGTGDITSNTTVSPNTSARAQIV
                     CKTENAATVCGIKEAGMIFDICDCRNRKLVKDGTIVEKQTIVMDITGKALSILKAERT
                     ALNLIMRMSGIATETRKFVDAVNRYKGSVRIACTRKTVPGLRLFDKKAVSIGGGDTHR
                     MALDDMVLIKDNHIFFSESVEKSVKLARQNLGSSVRVECEVTTLNSAIAAINAGADII
                     MLDNFSPSDVSRTIKEITKKGIRKRAKLEISGGISLQNVKSYAKSRPDIISIGRLTHS
                     PEAINFSLEMIEKIRS"
     gene            complement(6815..7759)
                     /gene="nadA"
                     /locus_tag="VE223_07460"
     CDS             complement(6815..7759)
                     /gene="nadA"
                     /locus_tag="VE223_07460"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HZC21467.1"
                     /translation="MLDTDYRNRILAMKEKKNAVIIAHNYQPPEVQDIADFVGDSLAL
                     SRNAAQTNADTIIFCGVHFMAETASIICPEKRVLIPDFGAGCSLASTINAHELKAWMT
                     EHPNAIIVCYVNTSAEVKALSDYCCTSSNAVKVVNSIPKDREVLFLPDMFLGSYVAEI
                     TKRKNMYIWPGECHVHAGIHAEEINKMLATFSDGEFLVHPECSCTSSTLYHMATGELT
                     KRGHILSTEGMMNHAKTSDAKQFVIATETGIIHRMKKENPNKEFIPLKEDAVCKYMKK
                     ISLEKVYNSLVNDIYEVKVPANIAEKAKLSIDRMLTIS"
     gene            complement(7985..>8203)
                     /locus_tag="VE223_07465"
     CDS             complement(7985..>8203)
                     /locus_tag="VE223_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HZC21468.1"
                     /translation="PVETGKEYDVQVTEISRKGDGIARIQGFVIFVKDGKVGQNAKIR
                     VLQVGNRFAIAEIVNGASSATTSEQTTS"
BASE COUNT         2460 a         1602 c         1535 g         2606 t
ORIGIN      
        1 cgctcagtaa ggaaaagtta agtgaatatg gtgttaatca aaacgatatt gtggttattg
       61 aggtccccga ggatgttcca caaggagcta ttatggttac gatctggcct cactatcttt
      121 cagttgcaaa ggtaaaacgc ctcagagagg gatcaattta tgcgccgcag ctattcaata
      181 tcgatcttta gttttattat gcatatgatc caataggtag tctatagctt aattccacat
      241 tgatactatc atacagtttc aatttagatg ttatcgctat tctacagatt catgaactgg
      301 ttgtaaagca tgactttcaa tccacctcgt aattgaagaa acactatttc tgcagatctc
      361 aggtggatgc attatttcta atacttacta ccaatagctg gttcagtatt tatgttacct
      421 agtttattga agttgtttct gttgtcataa gctttttctc catatacatt atctatatcg
      481 tgtctcttag cttcaccaga ggactaaact tttttgtatc atgtacattg ccttttgtta
      541 ttctgaatga caccaacttt tggacttttc atctacatca aatgcagctt gaactcttat
      601 cacgtatcca tttctccacg atgtagtatc ctttgtttga agagttagtt agacctgatg
      661 cgtcaactat tggtgttact ggcttatcat cattacctag atttactact tcagatagtt
      721 taatttttag aatccttcta atatgtgtaa atgcatttct tcaatcctga tgtattcaga
      781 taatccacgt actattcctt gtactatacg atatggaatc ttaaaaccaa ctttcaagaa
      841 ttcaacgaac tctataatta tgaggacgct gaaatggggc tccaactttg catttattca
      901 tctactttat ttcatcatta gctgatttta ggaaacttga gtactagtcc tagtccaacc
      961 aaggattcat tataatcatg ccatgtttac tggcatagtt tgataccaaa tgaaaaaaag
     1021 ctatcaaata taaaaatttt ttaaatccat tgtcataata tatatctgat tgacttttac
     1081 tttcttttgt aagcatggaa gacatatgga ttgtccagga gaatggccga taggggattc
     1141 acccggatct actcaagatt gttcttttga tatcaaaata gtaaaatgcc aatgtgaatg
     1201 ccatcccaaa tgatcgtagt aatgtcaaat cttattgaca ttttaaattg actgagactt
     1261 ctctttctaa ttcaaaaagt acaggcatgg ctgtatgtaa aattgtaata tccaaattac
     1321 ttatcttaaa gaagattgca aagaatgcaa taaacaaagg acatgagtta atattttgtt
     1381 atttcattat agacatagac atatctacag cgcgttaatt catagattgt atttatctgc
     1441 gtcagttcga actgtatttg acaacgaaaa aatttttggc tggggtcaga gattggtaca
     1501 tgtaatcatt ctttcttttt gaaaatcatg tagccaccac atcatcattc cctagaaatt
     1561 aggttattcc tattttgtca attatatctt tagccttttt gcgcatcgct ggcgtaatag
     1621 tgactacaac tattccctct gatggttgac catatagaac aaatgtgcgg taaggagcgg
     1681 cagcaatgat gggtagagcc agcatatctt cctctccata gactacaact ttaacaggac
     1741 taggtatcct taatgccttg tgcaaaattg aaacagcttc tctacagata ccgccagcag
     1801 gattggtaca atgcagttca tgtatgctgg cattctgatt gtgtaagctt cctttgcgtt
     1861 ttcttcgtcg ctccttgtta tcaataaccg atatatgggg caaaatgtca taggatatta
     1921 gtcgatctgt ggtcgaatca cctaccgaca ccaccttctt agcgttatat aagatgcctt
     1981 taattttttc tttggttaga tcttcatctt ttattagaat accaaagggc tctttgagaa
     2041 tatgtatatc actacaagtg aggggcatta tgggtctcag cttggctaaa tgaatctcca
     2101 gcctctgatt gatcggattc ggcttcttgt tgcacccgca tctctgcagc gatgacacta
     2161 attctgcctg ctatagtctt agcaaccttg ctaaatacat aagagtgaat agaatcagga
     2221 tcagaaatga tcacagattt gccaatgtca cttccagtca taatctgagg atgaagtggg
     2281 atctctccaa tgaatggaat tttgaattgt tcacttacca actgcccgcc tcccttaccg
     2341 aagatatgtg tatgctcttt gcaatgtgga cattcaaggt agctcatgtt ctcgataaca
     2401 ccaacaatcg gtacatttag tttattgaac atgcctattg atttgacagc tacattcatg
     2461 gcaacatctt gtggtgttgt tactatcagt attccagtaa tgggaattgt ttgagctatg
     2521 gttaacggtg catcgccagt acctggcggt aagtctatta tcaaatagtc aaggtcgccc
     2581 caattaacat cggttagaaa ttgcttcact atgcctgaaa taattggacc tctgtaaatt
     2641 ccagcttgct gtgattgttc atagaagaat cccatagaaa ttactttgac gccctcggaa
     2701 attggaggct gaatcttatt gttaatcact tctggagacg cctttaaacc aagcattaat
     2761 ggaacactag ggccatagat atctgcatcc aataatccga cttttgctcc tgtttttgcc
     2821 aatgccatag ctaaatttac agatactgtt gtctttccta cacctccttt tccactggcg
     2881 actgccaaaa tattcttaac tccaggcaat agctcatcca tagatatagc acgcccttcc
     2941 attacacgag ctgtaacttt cagctcaagt tccttcactc ccaggtttgc aatggtattc
     3001 cggacgtcct gttcaatatc gctattgaag ggacatgcag gagtggtcag ttcaagtgtg
     3061 aatgcaactt tgccattatt aatggctaac tcctttatca tacccataga aactatgtct
     3121 ttatgtagtt caggatcaac aaccttcttt aatgcagaaa gaaccgcgtc aacagaaacc
     3181 atattattaa taaaaatttt acatatatga tatttaaact attcatctaa tcctctgctg
     3241 atggctcagc agatacgttg cgaagcggca aacatcgggt accttcgtat tcgtctttaa
     3301 gcgattaaaa attactacgg gaagatcttc ttcacatctt gaaaccgctt tcttaatgtt
     3361 actatgctgg tatccccagc aacagcaatc tgtgcttggc taactttttc actctccttt
     3421 atacaagcag catacagtac cgccacagca agagcattgg ggtctttgcc atgtgagata
     3481 ggattctctt ttatcgtagt taacatttga agagctcttc tatatgtctt ttcgctcacc
     3541 tttgctttat tagctatctt ggcaaggtat acgttagaat ctattacagg taaatgaagc
     3601 ttcaaatgcc taaccagtaa ccgataacat tttcctgcaa atattgaatc agtattcgca
     3661 gtttctgcga tttcgtctag agttctggga atgtttaatt ctctgcatgc tgcgtaaaca
     3721 gaggcaacaa ctaaggctct gattgatctt cccttaatga ttcgcctatc aagtgcctta
     3781 cgataattat aagctgattt ttctattaaa gcgtcattta aggaaagttt gtcttttatt
     3841 gtgctcaaaa tagcaaaagc attcttgagg ttccggtgat aacttctatt gttgctagag
     3901 attttattcc atcgtcgcat cctctgtacc ttgctcatct gttcagggct gatcgcggca
     3961 ccgtttgcat ctacgttaga gtaagatatg aaggtagata ggcccatatc atggaatgct
     4021 aaggatgtgg gcatcccagt cctgctcttg ctctcaatat catcacctga ataaattctc
     4081 cattcgggtc ccaaagactc attattatca tgtatcacca ttccacatga actacaaact
     4141 gtttcgctag tttccgcatc gaagattaaa gctctgctat cacagagtcc gcacacttca
     4201 ttactaaccc ttaatggagc agaaggttct tgtttcatca attcttattc ttccaataga
     4261 gggattgtag tcaatatagg gaatctgttt acagacacac taatagtaac tatttcgctc
     4321 gtttcaagta caaacaacat caataaaaca ctaatgtaaa cattttatta caatggagtc
     4381 gatataacta cattgatacc aaatgtaacc ggagatgccc gatcagctac tgtaacgaga
     4441 tcatttagat ttgatatcga tttgtcaaaa atcttagatg aagaggcaga aagaatgggt
     4501 gtttctgtga atgcgctggt gggcatcatc ctgaggaggt atagtgaatt cactagatat
     4561 ttgtcaaaga ttgacatgat tgtaatcaac cgtgagttat tgatctcttt gcttgaaaca
     4621 agagattgtg aataccttta caagttgggt atgaaattag gtgaaacagt accggtcgat
     4681 acaatcatgt tttggaaaaa aactcttaca gaacagtctg tattagagta catcgaaaag
     4741 attatctgca gatatggtca tctcggtacc tacgatgaag tgtctcaaac gaacactcga
     4801 actattgtga taagacatcg attaggaaga aatggatcga aattctttga aggatatctt
     4861 aaggccacac taaaaaatac tattgcaaaa gacgctatat ttgacgtgac ggattcttca
     4921 gtcaaattcg aaataaaggg tgtaattact aacgcctaat atatttatcc aaaggttcat
     4981 aaactgatat ttagattatc aaatgattaa atgtttgcca gagtgtatat gagcgacgta
     5041 gtaaggatcc ctccaaacag actgacaaac tctctgaagg atactgctat cggaattcta
     5101 aaggaaaagt atgaaagtat gatcagtcct gagcttggtt atgttgtaat gatcatagac
     5161 gcgactgcaa atactgttgg aaagttggtt gcaggtgacg gtgcaacata tcacagagtt
     5221 acttttgaag ccctgacatt ttatccaaaa ctacaagaag tagtagaagg ggaagttgta
     5281 gaaattactg actttggagc atttgtcaga atcggaccga cagatgctct tctacattta
     5341 tcccaaataa ctgatgatta cctaagaagc gatgttaaac agggagtaat tatagctaac
     5401 cagagtgcta agtcacttag gattggttca agaattcgag ctagggtgac cgctgtgagt
     5461 cttggtaaag gagcggcaat gggtaaaatt ggcataacat gtcgacaacc atttcttggc
     5521 gcaagcgaat ggatagagca ggaaattaag aaggcaaaac aaccgcctac accagcaact
     5581 acaaagaaag gaggaggaag caagtaaatg gcgagagaag ttgcctgtaa aaaatgcaaa
     5641 gctgttacaa ttggaaaagt atgccctata tgtaaagcaa cggatcttac tctggattgg
     5701 tctggaatta tcatcatttt tgatgcttta aaatctgaaa tagctgctac tcttgatatc
     5761 tcgattcctc ataagtatgc tcacaaagtt tcatagcaga cacaaaaatg gaaaacttgg
     5821 aggcatactt taacgttcga gaatcattaa taaattttct tattgaagac atcggaactg
     5881 gagatattac aagcaatacc actgtttcgc cgaatacttc tgcgcgcgcc caaattgttt
     5941 gcaaaactga gaacgcagca acggtttgtg gtatcaaaga ggcgggtatg atttttgaca
     6001 tttgtgattg cagaaatcgc aaattagtta aggacggcac aatagtagaa aagcaaacta
     6061 tagtaatgga tataactgga aaagcactat ctattttaaa ggcagagaga actgctctca
     6121 acctaataat gcgaatgagc ggtatcgcta cagaaacgag aaagttcgtt gatgcagtta
     6181 atcgttacaa aggctccgtt agaatagctt gtacacgtaa aactgtgcca ggcttgcgac
     6241 ttttcgacaa gaaggcggtc tctataggtg gaggagacac gcacagaatg gcgcttgatg
     6301 acatggtttt gataaaggat aatcatattt ttttttctga atctgtggaa aaatctgtta
     6361 aactagcaag acagaatctt ggttcttcag taagagtaga atgtgaagtc acaactttga
     6421 actctgccat tgcagccata aatgccggtg cagacattat aatgctcgac aatttttctc
     6481 cctcagatgt atccagaaca ataaaggaga taacaaagaa gggtattcga aagagggcta
     6541 aacttgagat ctctggaggg ataagcttgc aaaacgtcaa atcctatgca aaatcaagac
     6601 ctgacataat ttcaattggt cgtctaactc attctccaga agcaattaat ttcagtctcg
     6661 aaatgatcga gaaaatcaga tcatagtagt aatcttaaaa attcaataaa tctcatcgag
     6721 gctcgttcct acattgtttt tattgtactc cgaagtgacc aagcaggttc gaaaaatgtc
     6781 atttgtgttt gtacgattga aaatcgcatt gcttctatga tattgtcagc attcggtcga
     6841 ttgaaagctt tgccttctcg gcaatgttag caggcacctt gacctcataa atgtcattta
     6901 ccagtgaatt ataaaccttt tctaaactga tctttttcat atatttgcat actgcatctt
     6961 ctttgagagg aatgaactct ttgtttggat tttccttctt cattctatga attatgcctg
     7021 tttctgttgc gattacaaat tgcttagcat ctgaggtttt tgcatgattc atcattcctt
     7081 cagttgacaa tatgtgacct ctctttgtca attcacctgt agccatatga tataatgtag
     7141 atgatgtaca gctgcattcc ggatgaacta gaaactcccc gtcgctaaaa gttgcgagca
     7201 tcttgttgat ttcttctgca tgtatgccag catgtacatg acattcgcca ggccagatat
     7261 acatgttttt tctcttagtt atctctgcta cataagatcc taagaacata tctggcaaaa
     7321 aaaggacttc cctatctttg ggtatgctat tcactacttt aactgcattg gaagacgtgc
     7381 aacagtaatc agacagtgcc tttacttcag cagaggtatt gacataacat actattatag
     7441 catttgggtg ctctgtcatc catgctttta gctcatgagc attaatagtc gaagccaggg
     7501 aacaccctgc tccaaaatct ggaatcagaa ctcttttctc tgggcagata atcgaggccg
     7561 tttcagccat aaaatggacg ccacagaata ttattgtgtc agcattagtt tgcgccgcat
     7621 ttcttgatag agctaatgag tcaccaacaa agtcggctat gtcctgtact tcgggtggtt
     7681 gatagttatg tgcaataatt acggcgttct tcttctcttt catagccaat attcgattcc
     7741 tatagtcagt atccagcatt gtcattttga tagataacga tgatccgatg tcaactatga
     7801 catttaaagt agtatagttt aggacaacat tgccttacct ctacacatta taggcaatac
     7861 ttgcctccat tacaatgtca atatcacagc atctaccgcc ctttgtagct ataactactg
     7921 acaatcaaag atatcgttgc tgaataatta aaaacaaggt attactgcca cctcgtgcag
     7981 tagtttagct tgttgtctgc tcggacgttg ttgctgagga agcgccatta actatttctg
     8041 caatggcaaa tctgtttcct acctgaagta cacgaatctt tgcattctga cctacctttc
     8101 catccttaac aaagattaca aatccttgta ttctagcaat accgtctccc tttctactga
     8161 tctctgtgac ctgaacatca tattctttgc cagtttcaac tgg
//
LOCUS       DASQSJ010000376         3300 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_67603, whole genome shotgun sequence.
ACCESSION   DASQSJ010000376 DASQSJ010000000
VERSION     DASQSJ010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67603"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..192)
                     /locus_tag="VE223_07470"
     CDS             complement(1..192)
                     /locus_tag="VE223_07470"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HZC21469.1"
                     /translation="MSLNCKDAGDPVCTHTVYGETEEEVLQNAKKHGIEVHGFTEEAW
                     NKEIEKNGDDYRKIMKPAL"
     gene            318..872
                     /locus_tag="VE223_07475"
     CDS             318..872
                     /locus_tag="VE223_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21470.1"
                     /translation="MYGISEKYILMALSLITFSIYVCPVYAQVSTNVTKTWLDREHNI
                     KILFNITPAQPTIDTPSVLRFTVQNLKTDKPVTKLLATVVILGGNSNQETPFRSTNIS
                     APYGDFSINIIFPNMGSYQVITRITSQTHDVASLASFTVIVPAPQSTLNFFGGNYIIW
                     VSLLISAAAGILCFLILKNTMYKD"
     gene            1337..1930
                     /locus_tag="VE223_07480"
     CDS             1337..1930
                     /locus_tag="VE223_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21471.1"
                     /translation="MAAASLAILVYIAVIITGTYYTQNTPSGSSNKTLLAERTNLDSA
                     MRQQIANSLDYVHKSDVNMAALTVPLHGVNLSRNQFILLYDSTPYASKGHIALNLPCD
                     ANTPNAPIFQVLVGRAPNLAPLALGYISQLSVAPQMCVYHGQFGFGDPVTDVVLKNIS
                     TKTISLGGPHSATITTHEYYIPTEPSFEQLQHQKAHS"
     gene            complement(2252..2992)
                     /locus_tag="VE223_07485"
     CDS             complement(2252..2992)
                     /locus_tag="VE223_07485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21472.1"
                     /translation="MGNAHSLIAAILIIGAGFLPPTVTTIANAQMMGPMASMFCNAVR
                     AGVATGPQAGICGLFAQNQLGQSTLANGATAAGGTGFPCLPQFGCGTTATTTTNGLGI
                     ANSICASGFTFDPASGLCIPTSTTNRVCGVNFILQNGVCVPISQTQPTPPIANAGPDQ
                     TVTNGSIVILNGAGSTATTPGATITGYSWTQTAGPAVSLNAANTVTPTFIAPTVTTQT
                     VLIFSLTVTDSNGQVSSPSTTQVTVNAR"
BASE COUNT          970 a          654 c          621 g         1055 t
ORIGIN      
        1 ctacaatgct ggcttcatga tctttctgta atcatctcca ttcttttcaa tttctttatt
       61 ccatgcttct tctgtaaatc catgaacttc tattccatgc tttttggcat tttgtaatac
      121 ttcttcttct gtttcaccgt agacagtatg tgtacacact ggatctcctg catctttaca
      181 atttaggctc aaggtcatta caataggaat attatctgtg tagttaagcg ttttacttgt
      241 ctgtagtgaa gtgatgataa aattatgata gctactttat taaaataact gatataactc
      301 ctctcttctc cttgtcaatg tacggaataa gcgagaaata catactaatg gccttgtcat
      361 tgataacatt ttcaatttac gtttgtccag tatatgcaca agttagcaca aacgtcacta
      421 agacttggtt agatagagaa cataatataa aaattctatt taacatcaca cctgcgcagc
      481 ccacgataga tacgccgtct gtactaagat ttactgttca aaatttgaag acagataaac
      541 ctgtaacaaa gctattggca acagtcgtaa tactgggagg taatagcaat caggaaacgc
      601 catttcgatc gacaaacata tccgcccctt atggtgattt ctccatcaat atcatctttc
      661 ctaatatggg atcataccaa gttattacaa gaataacgtc acaaactcat gatgttgctt
      721 cattagcatc gtttacagtt atcgttccag ccccacaatc tactttgaat tttttcggcg
      781 gaaattacat tatttgggtt agccttctta tctctgcagc tgctgggatt ctttgctttt
      841 tgatcctaaa gaatactatg tataaggact agcgaacctg tcaattgctg tgggtaaagg
      901 catagaatat cttttctatc tttcaataga tcataattca tgttcaaaaa gacagaaaga
      961 agaaatctac atgatgagtc atataccctt ttactgtaac atcaaaatct atgccctcag
     1021 attccatggc gtgattgggt tttgtctgtt attgttaatc gtaacccgct tgagaaattc
     1081 tcttgagcgc acaatacgcg tcatgacctt gatcctattc agcaattctt ggactttgtt
     1141 tttattatca accctttctt attttcttct tcaacgaatt gttttatggt cttgacagtt
     1201 tgagctcgat tcaagagcct aggctctgat tttaagtgat tgaccttcaa ctgccagttc
     1261 ctgtgctgtc aataacatat tacttttaag caggcagaaa ataaggatga tctatatgac
     1321 tattgcatta acaactatgg cagctgctag tttggcaata cttgtttaca ttgctgtaat
     1381 cattactggc acatattata ctcaaaatac accatctggt agtagcaaca agaccctttt
     1441 agctgaacgc acaaatcttg attcagcaat gcgtcaacaa atagctaata gtctagatta
     1501 tgttcataaa tcagatgtca atatggcagc attaactgtt cctctccatg gtgtaaatct
     1561 cagcagaaat caattcatct tgttatatga ctcaacacca tatgcaagca aaggacacat
     1621 agccttgaac ttaccatgcg atgctaatac tcctaacgct cccatttttc aggttcttgt
     1681 tggccgtgct cctaatttgg ctccattggc acttggctat atatcacaac tgtctgtcgc
     1741 cccacagatg tgcgtatatc atggtcagtt tggatttgga gatccagtta cagatgtagt
     1801 tttgaagaat atatctacta aaactattag tcttggaggt ccgcattctg cgacaataac
     1861 tactcatgaa tactatatac ctacagagcc atcatttgag caactacaac atcagaaagc
     1921 acattcctaa agtaataata attggaacat gatttgaaga ttcgaaagaa acactacaag
     1981 gttggataat atacggttct tcaaacgtag atggacacgc gatggtaacc acccgagaga
     2041 aagaaaaatg tctaagcacc atatttgtaa tgtgtagatt agtagatgtt ttttcgtaag
     2101 aataaaagag agatgcaata gaactactaa agtcaggagt taatcttact gaggtatcca
     2161 tccagctaca ggaatcaaca accatctggt ctcaaggtac agcacttttt cctgtcttgt
     2221 tgcaaagtct tttatcagat ttcggttatt attatcgtgc atttacagtg acctgtgtag
     2281 tgcttggaga gctgacctgt ccattagagt ctgtgacagt tagcgagaat atcaatactg
     2341 tctgtgttgt tacagtaggt gctataaaag ttggggttac ggtatttgct gcatttaatg
     2401 acactgctgg tcctgcagtt tgagtccaac tatatccggt aatcgtagcc cctggagttg
     2461 tggcagtact tccagcacca ttcaatatga cgattgaacc atttgttact gtttggtctg
     2521 gtcctgcgtt tgcaataggt ggcgttggtt gtgtctgcga aataggtaca cagacaccgt
     2581 tttgtagtat gaaatttaca ccacagacac gatttgttgt cgaagtaggt atacataaac
     2641 cacttgctgg gtcaaatgtg aaacctgaag cgcatattga gttagcaatt cctaatccgt
     2701 tagtggtggt ggtagcagta gtaccacaac caaattgtgg taagcatggg aatcctgttc
     2761 ctcccgccgc agttgctcca tttgctaatg ttgattgtcc taactggttt tgtgcaaata
     2821 gaccacatat acctgcctgg ggccctgttg caactccagc tctgacagcg ttacagaaca
     2881 tagaggccat tgggcccatc atttgcgcgt ttgctatcgt agtaacagta ggaggaagaa
     2941 atccagcacc aataattagg atagccgcta tgagagaatg agcgttaccc attcatttat
     3001 ctcacttcat ctttcatctt attctatttc aagagttcag atgtggcttt tctacgaata
     3061 atggcagagc cttcgatcat tatttaatat acagacaccc ggtctatttc gtagacaaac
     3121 atcaaagtag tttagtggac aaggtgatgg ggcagcaatg gtaaagagct gaagtagaga
     3181 gcgtagattt ggacaaaatg caaaattcac ccatgatcta atttgctttg catgctatgg
     3241 gacattaatg agtaagctaa acttcaagac ataggataag atataaagaa tatttgctgt
//
LOCUS       DASQSJ010000377         2076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_540061, whole genome shotgun sequence.
ACCESSION   DASQSJ010000377 DASQSJ010000000
VERSION     DASQSJ010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540061"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(915..1400)
                     /locus_tag="VE223_07490"
     CDS             complement(915..1400)
                     /locus_tag="VE223_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21473.1"
                     /translation="MIDFQQEMLKLKDFNEAFELVKLAVNAKFNMHRAGLSLILQGLP
                     SRIGAYHILGSNVIVVNRTILDIIRQHKSIEEYNSYLFMVLAHEYLHSFGIVDEFRVR
                     QMAYDLCSSLLGSDHPASTMAKEDPSALFPELILLRQNKFDEHFEIVKNFDTAGQSYI
                     Q"
BASE COUNT          695 a          391 c          361 g          629 t
ORIGIN      
        1 aatacaaaat cgacaaggaa aaaagaagca caagaagaac ataatgcgaa agatgacaat
       61 ccgacatagt taatttgtgg gaagtattag atagacgagc attactaata tcaaaaaatc
      121 ttaacacaaa ggaagcaata cgttttaatg aactaaaaag gataattcca ggcatcagta
      181 gtacagtatc aacatctaga ttgttggtgc tcgaaagtga aggccttatt tgtaagagga
      241 tctacccaga aataccgacc taaagtagaa tatcgtttaa ctgtccaagc aagccaacta
      301 ggaataatac ttaaaaaccc gtgaagactg acacagcgct agaaagcctc taggattccc
      361 acgacaacag caacatctgc tatgtaggct atgtatagat atagagagtg aaactatact
      421 gtcgctatgg cgtgttgcac ttgatgattg atccatagca acaggattga atttcaacaa
      481 ttcagttgaa atattttgtt ctgtatttac tttgttttaa aatttttacc tcagtttcat
      541 gttggtaaga tgattcatca ggtgtcttcg ccgcagactt tcaagcctca agctgtctca
      601 acggttacaa ttgctgcagg acaaatctcc attatattat aacgtcatca ataacaaact
      661 ttacactaca tcatgctatt gggttcggta ttaattttgc aaagggatga ataactgtat
      721 cacatttttc cggggagtac gaatgatatt taatagattt atttttatat acggctatat
      781 cgatattgaa cgtgctattg ctcgtgtagg atttagcgga cccattctaa tgggcgtcca
      841 tgatgccact atgatcagat atataaaaca agataaccag cctggtttac atttatccat
      901 accccaactc ataattattg gatataagac tgacctgcag tatcaaagtt ctttacgatt
      961 tcaaaatgct catcaaactt attctgtctg agcaaaataa gctccggaaa caatgccgaa
     1021 ggatcttcct tggccattgt tgacgcggga tgatcgcttc caagaagtga agaacagaga
     1081 tcatatgcca tttgtcttac ccgaaattca tccacaatac caaagctgtg cagatattca
     1141 tgtgccaata ccataaacag atacgaatta tattcttcga tagacttgtg ctgtcggatt
     1201 atatccaaga tggttctatt tacaacgatc acattagatc cgaggatatg gtacgcccct
     1261 attctactgg gtaatccctg tagaatgagg ctcaatccag ctctatgcat gttgaatttg
     1321 gcgttgactg ctaactttac cagttcaaat gcctcgttaa aatcctttaa ctttagcatc
     1381 tcttgctgaa aatcaatcaa actcgtacag ttatactatg caaaactgac tataaaacat
     1441 atagttacta ttatgactat attctagctc tcgctatatt cttcttgtac atgcacgtct
     1501 tttggcaccg atgagtcatg gagagatagt accgaagtag ccttatccaa ggattcaagt
     1561 tggaatatta atttcggaaa attttactca tcatatattg atctgaatct tcaaacaaag
     1621 aacgcgcata cacctaattt gggacattta agacataatt ttaaatcctt gaatatacac
     1681 taaataagta tccgagcagc cagaagagaa gaacgatcca tcattcagaa tctgcgcaat
     1741 gggtaaaggc ctattgtgtc catagaaatg atgatttgca tccatatctg ataataggtc
     1801 agcttgagtg gtatctgcat tattcaatgt taatatctag aacacaacgt atcattaaat
     1861 ccccagatca tattgtttca atgccttctt ctaagatatc gccaataata tcggatgacg
     1921 tcaattagag atgttaaaac gagatttgtt taatatatct ttagaatatt tggaatgatt
     1981 tgttgttagt atgcttaaca aacactaaaa ggattgaatc tttacagact ataatactac
     2041 acctatcaac actgagcata aattatatcc ttgcgc
//
LOCUS       DASQSJ010000378         2176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_384968, whole genome shotgun sequence.
ACCESSION   DASQSJ010000378 DASQSJ010000000
VERSION     DASQSJ010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384968"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..502)
                     /locus_tag="VE223_07495"
     CDS             complement(<1..502)
                     /locus_tag="VE223_07495"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HZC21474.1"
                     /translation="MRRISDYKDDDDYSSNNDNKSSTFRYLCTIKDLPTAGKSRQFLM
                     SIDKGSKKIQIAIFNVDGKYFCISNKCQHQGGPLSEGILDEGKKVVTCPWHGWKYSII
                     DGKAPHKGGDSIDCYETKVIEDKFYVNPLPTNIGRRVTRPHKEYSDLQNSVREHLNHM
                     EKDSKLL"
     gene            627..1475
                     /locus_tag="VE223_07500"
     CDS             627..1475
                     /locus_tag="VE223_07500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21475.1"
                     /translation="MIQFLINDMFCKLTVVQGKKSSAMVFSITIALALATVATTATTT
                     TATAAISSTSKSSPSNQNVSSSIQQINQPPYNATQNMISAFKIADSLLMQALNNLNTG
                     KTQGALKQLNMAKTQIEQYQLAALDTMSNPVLQLSREHLLAAENALKMRNTDKAISEL
                     NILRQLRLLHQQGMMAMKLPMAGELNSTFNSLESHLLATDENINAYNIQGAISQLNLA
                     NDQLYAHQLAMLDVVYSFFNNTRTHFKQSIVDINSGNIQGAISELKMVNNLLRGHEQG
                     MLMMIG"
     gene            1562..1942
                     /locus_tag="VE223_07505"
     CDS             1562..1942
                     /locus_tag="VE223_07505"
                     /inference="COORDINATES: protein motif:HMM:NF039409.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6328 family protein"
                     /protein_id="HZC21476.1"
                     /translation="MILASDQLVTSFAGILFGFLLNISVRSANQLVYGEKIILVLALF
                     SITISVSLFVMPVIYHHLQFPYSDLDKFKRRAHRFITFGLLPTFFTLYLGMVLAFSPL
                     IDKLAYIIVVLPFAFLYVLYRMRK"
BASE COUNT          706 a          401 c          355 g          714 t
ORIGIN      
        1 gaagaagctt gctatctttt tccatatggt ttaaatgttc tcttaccgaa ttttgtaaat
       61 cagaatattc tttgtggggc cgtgttactc tcctgccaat attagtggga agggggttta
      121 catagaactt atcttcaatt accttagttt cataacagtc aatgctatct cctcccttgt
      181 gcggagcctt gccatcaatg atagaatatt tccaaccatg ccaaggacaa gttacaactt
      241 tctttccctc atccagtatt ccctcgctta gtggccctcc ttgatgttgg catttatttg
      301 atatacagaa gtatttccca tccacgttaa atatagcgat ttggattttt ttagatcctt
      361 tgtcaatgct cattaaaaat tgtcttgatt taccagctgt tggcaagtcc ttaattgtac
      421 aaaggtaacg aaaagtagag gatttgttat cattattact gctatagtca tcatcatcct
      481 tatagtcact tattctcctc attaatgaac tataataact actcatacta ataggtagat
      541 tacttgaatc aagaacaaaa gagaagcttg tttggctgta agaaaattat tagaccttca
      601 acctagaaag gccaaaatta agatctgtga tacaattcct tataaatgac atgttctgta
      661 aactaactgt agtgcaagga aagaaatcat ccgcaatggt gttttctatt acaatagcac
      721 tagcacttgc aacagtggca acaacagcaa caacaactac tgcaactgcc gctatttctt
      781 ctacttcaaa atcatctcca agtaatcaaa atgttagtag tagtattcag caaataaatc
      841 aaccacccta caatgctaca caaaatatga tatcagcatt taaaattgca gattcactat
      901 tgatgcaagc attaaacaat cttaatacgg gtaagaccca aggagcgctt aaacaattga
      961 atatggctaa aacgcaaata gaacaatatc aattggcagc tcttgatacc atgtccaatc
     1021 ccgttcttca gctatcaagg gagcatctat tagctgctga aaacgctttg aaaatgcgaa
     1081 atactgacaa agcaatttca gaattaaata tcctaagaca gctaagatta ctgcatcaac
     1141 aagggatgat ggcaatgaag cttcctatgg ccggcgagct aaattctaca ttcaattcac
     1201 tagaatctca tttgttggct acggatgaga atataaatgc ctacaatatc caaggagcaa
     1261 tttcccaatt gaaccttgcc aatgatcaat tgtatgcaca tcaattagct atgcttgatg
     1321 ttgtctattc gttttttaat aatacaagaa cacatttcaa gcaatctatt gttgatataa
     1381 attcaggcaa tatccaagga gcaatttcgg aattaaaaat ggtgaataat ctgctgagag
     1441 gacacgagca aggtatgttg atgatgatag gatgatgatg tcgtcgccca atcaagcata
     1501 aaggattaac tttgaaaacg gcaggataat actgtagctg actttctatc tctaaaatca
     1561 aatgatacta gcttcagacc aattggtgac tagctttgct ggtattttat ttggttttct
     1621 cttaaacata tcagtcagaa gtgcaaatca actagtatat ggtgagaaaa ttatccttgt
     1681 tttggcatta ttttcaatta ccatttcagt atcacttttt gttatgcctg taatttatca
     1741 tcatctacaa tttccataca gtgatctaga taaattcaaa agaagggctc atagatttat
     1801 aacctttggt cttttaccta cattctttac actctatctt gggatggtac ttgctttctc
     1861 acctttaata gataaattgg catatattat tgttgtattg ccctttgctt ttctttatgt
     1921 tctttataga atgagaaaat aattcaagaa ggaattcaaa ttctaatcaa aaacagttac
     1981 attgtcattt ttagtttaac tctattcggc tacctcttga ttcaaccttt ggtaggtaaa
     2041 tccttatttt gctatgtgat gctatgggat cgattcaaag cgtcattcag ctttaaaggg
     2101 caattgaaag aatagcaacg gagatgataa tggttaaaaa ggtattccat tgtaactact
     2161 gctaataaca cattat
//
LOCUS       DASQSJ010000379         6876 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_302681, whole genome shotgun sequence.
ACCESSION   DASQSJ010000379 DASQSJ010000000
VERSION     DASQSJ010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6876
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302681"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..788)
                     /locus_tag="VE223_07510"
     CDS             complement(96..788)
                     /locus_tag="VE223_07510"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HZC21477.1"
                     /translation="MILAISMKADRVPMPNITVHTLIEDFSKSSFLIFLFPWVGSYTY
                     RMYIEKSPGWLRAVQIGLGALTIALSIFALAFPGITYISVVWVLAIVLFFVGIEQIIV
                     GIFSPRRSRWSNIGLGILVLIFAAIAISFPIAAAITIIIFIGIAFLINGIARIIEGFS
                     GKHSGASRAFLIGVGIMAVALSVAVLISPFFGAILAGIIIGIGLLITGIQMIFAGIQG
                     RRAQIPTSDIAR"
     gene            complement(892..1731)
                     /locus_tag="VE223_07515"
     CDS             complement(892..1731)
                     /locus_tag="VE223_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HZC21478.1"
                     /translation="MNRRSYIKERADKGQKGRRNKNTSTKDIGHVILFLAVFLGIWQV
                     IFILGVFPKVSLPSPAMVAQSFADLLFNGSLFMSIGMTMWRLVTGFSISIILGIGIGL
                     LMVRFRDFGKTMSSFAVGLQSFPSIAWVPFAILLVGLNDFGILFVVVMSSIFSVMLST
                     YSGIRNIHSIYLRAARNMGAHGVSLFAHVMIPAATPSLIIGIRQAWSFAWHALIGAEI
                     LIAASVGLGHILLVGREFQLMDQIIASMITIFAIGFIFDRLIFYKLEDKVRARWGLNQ
                     ANE"
     gene            complement(2582..3574)
                     /locus_tag="VE223_07520"
     CDS             complement(2582..3574)
                     /locus_tag="VE223_07520"
                     /EC_number="4.4.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HZC21479.1"
                     /translation="MLNDLVKSRIDDKKPRSEGLTFIVDKLQGVDKDNFEILSPMIDV
                     VKIYGAFPLLIPEPILQRKIKFYHDFDVLVSTGSTITEYAIMENSLDRFVAEAAKIGF
                     DVIEIGENSIELSIEQKEKITQIVRSKGNLEYHWKVGRKDPRHQLGVNETLLKIDEAM
                     KIGANKVILEANQGMAVGIYDERGLVKWNFIGALTAKYPPMNFIFEAPLESQQSSLIA
                     EFGQRVNLAEIHIDFVPLVESQRRGFLSKATYGVSAFARKEPEGGPASKFIYYIIKSK
                     HPVEQGELINLTHLPRRTVQNAIEELKQQGLVMEKNSLDDTRRKTYYPIQSDWL"
     gene            3735..4817
                     /locus_tag="VE223_07525"
     CDS             3735..4817
                     /locus_tag="VE223_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HZC21480.1"
                     /translation="MDAKLSLGISAVIIIFVIVSSISYNISPGNANNDNNINGIASNI
                     LRIGYFPNLNHAQAVIGLETGDFQKSLSKDGISVEPQVFNAGPSVIEALFANQIDVAY
                     IGPIPTINGFLVSEGKDVRIIAGAASGGTVFVVRNDSNIKSPKDIAGKKFASPQLGNT
                     QDIALRSYLMRNGHKTKENGGDVEVVSANLPDIMTLFLKKQIDGAWVPEPWGSILVKG
                     ANGRVFLDERSLWPDGKFVTANIIARTDYLKNNPETILKLLRLHINETLWINYHKVQA
                     IQAFNGGLKKLTGKTIPEDELRQAWSRIEFTYDPIKRSLFKLANDAYNFGFLAKGKKQ
                     QPDLTNIYDLNPLNIVLKEKRLIAIN"
     gene            complement(4941..6509)
                     /gene="tgtA"
                     /locus_tag="VE223_07530"
     CDS             complement(4941..6509)
                     /gene="tgtA"
                     /locus_tag="VE223_07530"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HZC21481.1"
                     /translation="MSFEVRYTDLAARIGLLNTPHGILETPAFIPVVHPVRQAISPQY
                     LKRLGFRAVITNAYITLRHYGNEAKKKGIHNIINYDGIVMTDSGGYQLLEYGSLNIEP
                     AVIAQFEKDIKSDICIPLDEPTGYKLEYEKAKERVEQTLKNAKETLVLISEHSTTKDA
                     TDDAIWAGPIQGGEHLDLITYSANALDKIGFKLFALGSPVELMEAYEFSMLGQMIAAA
                     KRAIPTKPIHLFGAGHPLTIPFAIALGCDMFDSASYMLYAKDNRYIHTNGTSRLEEIS
                     YLPCPCPICSSYTIREILGMDRDSRVTEIAKHNLYMLKAEVCAVKQAIMDGRLWEYIM
                     QKARSHPKLMEAMAIFKNFELLEEGTPLFKEKAIFLYDQLDQYRPEVKRFRRMVSEFR
                     PRDKKKLILYPEPRVHPFYSTKEYFQIVKKFPNAQICAYNPFLGVIPVEISDIFPSSH
                     NLFKPMAWHPAKEYVAFSESLNAFLSTNRFEEIIIVADHFMKQVVDHEDDNKAVKKLN
                     PKIIDYRQDIIFQL"
     gene            complement(6512..>6876)
                     /locus_tag="VE223_07535"
     CDS             complement(6512..>6876)
                     /locus_tag="VE223_07535"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HZC21482.1"
                     /translation="GKKVSIETSDQKVYNGTLTGIDEKLDVILDNLDGRGVLKVILNG
                     SFVKEIKLMEKPFDFKALSDRLARVFPGLVKVREDVGAIIVMDKIKVTQDGIEEGVGL
                     AADRVKAIYDEFMRETKK"
BASE COUNT         2063 a         1303 c         1251 g         2259 t
ORIGIN      
        1 atctgggcct ctatgtctat tgttatgtca gaaatatata gattcatgga aagaatgtct
       61 ctacttcaat attattctga gctgttgcaa tttatttatc ttgcaatgtc gcttgtaggg
      121 atttgtgcac gtcttccttg aattcctgcg aaaatcatct gaattccagt tattagcagt
      181 cctatcccaa ttattattcc tgctaatatt gcaccaaaga atggagatat cagcactgca
      241 acagaaagag ctacagccat aattcctaca ccgatcagga atgctcttga tgctcccgaa
      301 tgcttacctg agaaaccttc tattattctt gcaataccat taattaggaa tgcaatacca
      361 atgaatataa ttatagttat agcagctgct atagggaaag atattgctat agctgcaaag
      421 atgagaacaa gtatcccaag tcctatgttt gaccatctgg accttctagg tgaaaagatc
      481 ccaacaataa tttgttctat tccaacaaag aacaaaacta tagcgagtac ccaaacaact
      541 gaaatgtagg tgatgccggg aaatgccaga gcgaaaattg atagagcaat agttagagct
      601 cctaagccta tttgtacagc cctaagccag ccaggtgact tctctatata catcctatat
      661 gtataggatc ccacccatgg gaataaaaat attaaaaaac ttgatttgga aaaatcttct
      721 atcaatgtgt gtactgtgat attgggcata ggcactcggt ctgctttcat agaaattgca
      781 agaatcattc atggtttctc agacaagaaa atttgtgaaa taccagtatt tatggaaaag
      841 gtggccttct ctttatgaaa gaattaaagg atctgtcagt tcgtggggct actattcgtt
      901 ggcttggttt aatccccatc tggctctcac tttatcctct agtttgtaga atatcagcct
      961 atcaaaaata aaaccgattg caaagatggt gatcatcgat gcaattattt gatccatgag
     1021 ttggaattct cttcctacaa gtaaaatatg acctaaacct actgacgctg caatcagtat
     1081 ttcagctcct atcaatgcat gccatgcaaa tgaccacgct tgccttatgc ctatgattaa
     1141 tgatggggtg gcagcaggaa tcattacatg tgcaaaaagt gatacgccat gtgcacccat
     1201 gtttctagct gcacgaagat agatcgaatg aatattacgg attccactat aggtagatag
     1261 catgaccgag aaaattgagc tcatgactac tacaaataag ataccaaaat catttaatcc
     1321 gactaataga attgcaaatg gcacccatgc tatactggga aatgattgta aacccacagc
     1381 aaatgagctc atagttttac caaagtctct gaacctgacc atcaataatc ctattccaat
     1441 gcctagaata atggagattg agaatccagt gacaagtctc cacattgtca tacctatgct
     1501 catgaatagt gaaccattga aaagtaaatc tgcaaaggat tgagctacca ttgctggtga
     1561 gggtagtgaa acttttggaa atactcctag aataaaaatt acctgccata ttcctaggaa
     1621 tacagcaaga aagagtatta catggcctat atccttagta ctagtatttt tatttcttct
     1681 tcccttctgc cccttgtctg ctctttcttt aatatatgac cgtcgattca atttgtttat
     1741 ctcttatcca cctaatgatg atgaaagtgc aaatcttgaa attcttctat agtctcctgt
     1801 gatggattct acaatttgtc tgctctaagg ttattattat tgtaatcttt tttttaatgg
     1861 ttgcatggtt tagaaacata cagcaattct gcctctcaat accatataac aacaacaact
     1921 cgtcaacaca aatagacttg ttttcttcga aattttaatg aatttgaagt agtagtaatt
     1981 ctctctgtaa taactgattt gcacgtatat attacacaat gtaaattgct catccgttaa
     2041 caaaatcttc tggccaactg acagacctag tacagtatct gctagcagtt tcattcttct
     2101 tcctccttgt gataattatt ggtgaataca ggcatttgca aaatttgata attgagccat
     2161 ttcctagaat ttatgacaat tttatttctt ttatcgttag gcatttgcaa ttcgtcatat
     2221 cgtagcggag aatataactt tgtacaaata tgcaattgaa agcaaagcta tgcaaaatta
     2281 gcatctatat ttataatagg agcgtctgat ggcatataaa aagtgttgga cttggtatta
     2341 atgagatcta ttggcaatga agaaatatat aataaaaatt ataatgttaa tgtcctgtat
     2401 aaaaaggaga ttatacgaga tagatcttgt tttctgctca ttatttgttc ttatcgtccc
     2461 ccaaggctgc atagtctaga gtatgatatt tgggtcgtcg ctttatatgt gaataaatta
     2521 aatctttatt gcaaaatcta gtctttttta aaatgcttat tatatatgga agatgtgtgg
     2581 gtcaaagcca atcagattgg atcggatagt aagtttttct tcgtgtatca tcaagactat
     2641 tcttctccat tactaacccc tgttgcttta attcctcaat tgcgttttga actgttcttc
     2701 taggcaggtg agtgagatta attaattcgc cttgttctac aggatgcttt gattttatta
     2761 tatagtagat aaatttggaa gcaggtccgc cttcgggctc cttgcgagcg aaagctgata
     2821 cgccataagt tgcttttgac aaaaaccctc tcctctgcga ttcaactaat ggtacaaaat
     2881 caatatgtat ctctgccaaa tttacacgct gtccaaactc tgcaattaag gaggattgct
     2941 gggattcaag tggcgcctca aagataaaat tcataggcgg gtattttgca gttaaagctc
     3001 ctataaagtt ccatttcaca aggcctcttt cgtcataaat acccacagcc ataccttgat
     3061 ttgcttcaag tattaccttg tttgctccta ttttcattgc ttcgtcaatt tttagcaatg
     3121 tctcgttaac tccaagttga tgtctaggat cttttctccc tactttccag tgatattcga
     3181 ggttgccctt tgatctaaca atctgtgtaa ttttttcttt ttgctctatg ctcaattcga
     3241 tgctgttctc gcctatctct atcacgtcaa atccgatttt agctgcctct gctacgaacc
     3301 tgtccagaga gttttccata atggcgtatt ctgtaatagt acttcctgtc gatacaagga
     3361 catcaaaatc atggtaaaat tttattttcc gctgcagtat gggttcaggt atcaacaatg
     3421 gaaacgcccc gtatattttt actacatcta tcattggaga taagatctca aaattatcct
     3481 tatctacgcc ttgcagcttg tctacgataa aagttaaacc ctcacttctt ggttttttgt
     3541 catctattct acttttaact aagtcgttga gcatacaaat ttacgatcta tgcatgtttt
     3601 gcatatattg gagttaccaa atatgcatag ctttttactt caagataact gtttgcatat
     3661 aactttctta ttttgcatat ttgtaagcag taatatgctt ataattaagt tacatttcgt
     3721 gtgactggtg tagaatggat gcaaagttaa gtctagggat atctgcagtc ataattattt
     3781 ttgttattgt aagttctata tcgtataata tatctccagg aaatgcaaat aatgataata
     3841 atatcaatgg catagcgtca aatattttga gaataggata ttttcctaat cttaatcatg
     3901 cacaggctgt tattggatta gaaacaggag attttcaaaa aagtctaagt aaggatggta
     3961 tctcagttga accacaagtc tttaatgctg ggccgtctgt aattgaggca ttatttgcaa
     4021 atcaaataga tgtagcatat attggaccca ttcctacaat taatggcttc ctggtgtcag
     4081 agggcaaaga cgtgagaata attgcaggcg cagcaagtgg aggaacagtg tttgtagtca
     4141 ggaatgattc gaatatcaaa tcacctaaag acattgcagg caagaagttt gcttctccac
     4201 aattaggtaa cactcaagac atagctttga gatcttattt gatgaggaat ggacataaga
     4261 caaaagagaa tggcggtgat gtagaggtgg tctccgcaaa tctgcctgac ataatgacac
     4321 tatttctaaa gaaacagatc gatggtgcat gggttcctga accatggggg tctatattag
     4381 tgaagggggc taatggaaga gtgttcttag atgagaggag cttgtggcct gatggcaaat
     4441 ttgtaactgc aaatattata gctagaaccg attatctgaa aaataacccc gagacaatac
     4501 tgaagttgct gagattgcat attaatgaaa ccttgtggat caactatcat aaggttcagg
     4561 ccatacaggc attcaatggt ggacttaaaa aacttacagg taaaacaatc ccagaagatg
     4621 agttgaggca agcatggtcg agaattgagt ttacttacga cccaattaaa agatctcttt
     4681 ttaagttagc aaacgatgca tacaattttg gatttttagc aaaaggaaag aaacagcaac
     4741 cagatttaac taatatatat gatttgaacc cattaaatat cgtgcttaaa gaaaaaagac
     4801 taattgcaat aaattaaaaa ttattccttt actcttgata gtagtaggcc agcaaccggg
     4861 aatgtgagct tgcatattat tatcatatat acagatcatc gcaactgcat gggctgccat
     4921 aacgtactaa aaatatgaca ttacaactgg aaaataatat cttgtctata gtcgataatt
     4981 tttgggttta gtttctttac ggccttatta tcatcttcat gatcaactac ctgcttcatg
     5041 aaatggtctg ccactattat tatttcctca aaccggtttg tacttagaaa tgcatttagt
     5101 gattcactaa aggccacata ttcttttgcc ggatgccatg ccattggctt gaacaaattg
     5161 tgagatgatg gaaatatgtc gcttatttct acaggaatta ctccaaggaa tgggttataa
     5221 gcacaaatct gtgcattggg aaattttttt acgatttgaa aatattcttt agtagaatag
     5281 aacggatgaa ctcgtggttc cggatataga attaatttct ttttatccct tgggcgaaat
     5341 tcagaaacca ttcttctaaa tcgcttaact tcgggtctat actgatctag ctggtcataa
     5401 agaaagattg ccttttcttt gaaaagtgga gtcccttctt ctaggagttc aaaattttta
     5461 aaaattgcca tagcttccat aagttttgga tgactacgag ccttctgcat tatatattcc
     5521 cacaaccttc catccattat agcttgtttt actgcgcaaa cttcagcctt taacatgtaa
     5581 aggttatgtt ttgctatttc tgttacccga ctatctctat ccattccaag tatctctctg
     5641 atagtataac tagagcagat tggacatggg catggaagat atgaaatctc ctctagcctg
     5701 ctagtgccgt ttgtatgaat atatcgatta tctttagcat agagcatata cgatgccgaa
     5761 tcaaacatgt cacatcctaa tgcaattgca aatggaattg taagggggtg gccagcacca
     5821 aaaagatgta ttggctttgt gggaatagca cgtttagcag cggctatcat ctgacctagc
     5881 attgagaact cgtatgcttc cattaattct acggggctgc ccaatgcaaa aagtttgaat
     5941 ccgattttgt ctagcgcgtt tgcagagtag gttatcaagt ctaggtgttc accaccttga
     6001 attgggcctg cccaaattgc atcgtctgta gcatcttttg ttgtactgtg ctctgaaatt
     6061 aacacaagag tctccttcgc atttttgagc gtttgttcta cgcgttcttt ggctttttcg
     6121 tattctagtt tataacctgt cggctcatca agtggtatgc atatatcact tttaatatct
     6181 ttctcaaact gggctattac tgcaggttcg atgttgagag atccatattc taacagctgg
     6241 taaccacccg agtctgtcat cactatgcca tcataattta tgatattgtg aattcctttt
     6301 tttttggctt cattaccata atgacgtagc gtgatgtagg cgtttgtgat taccgcacga
     6361 aaacctaatc tttttagata ctgcgggctt atcgcctgcc ttactgggtg gacaacagga
     6421 ataaaggcgg gagtttcaag aattccgtgg ggtgtattta gtagtccaat acgagcagct
     6481 aggtcagtat atctgacctc aaaggacaac tttacttctt tgtctccctc ataaactcat
     6541 cgtaaattgc cttgactcga tctgctgcaa gtccaacccc ttcttcaata ccatcttgtg
     6601 tgactttgat cttgtccatt acaattatag cccccacgtc ctctctgact ttcacaagac
     6661 ctggaaatac cctggcaagt ctgtcagaga gagctttaaa atcgaatggc ttttccatca
     6721 gttttatttc tttaacaaat gagccattaa gaatcacttt gagtactcca cgcccatcta
     6781 aattatcaag tatgacgtcg agtttttcat ctattccagt tagcgttcca ttgtaaactt
     6841 tctgatcaga agtctctata gacactttct ttccta
//
LOCUS       DASQSJ010000380         2159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_585824, whole genome shotgun sequence.
ACCESSION   DASQSJ010000380 DASQSJ010000000
VERSION     DASQSJ010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585824"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..626
                     /locus_tag="VE223_07540"
     CDS             108..626
                     /locus_tag="VE223_07540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21483.1"
                     /translation="MFGKGKNKEEQEEAKRKYVERFYILLSSLMNELFEYAATFGHVK
                     MPYNVSFGLIHDKRDSVLLKGIDQKTGKKMYLYNTRIIAKMFEERREQMLKDNTTNTL
                     FGWISDVCSLYIRPFVYEYVVEMQHRGEGAAERTTRQIVREFIDKLLNDPELKYVLDN
                     MKEGDSTNKSAV"
     gene            936..1292
                     /locus_tag="VE223_07545"
     CDS             936..1292
                     /locus_tag="VE223_07545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21484.1"
                     /translation="MSSRLSLLYLNMIYSYITPVFTWFMRFLVRAKIPAEAGNKMVQD
                     PNFLKNLEEYMNKVKPEAAYFLPLDGDRAMAFILNIDNNYEVPSLVEPLFQRMGAKVE
                     VIPVMNFDDFKKGISI"
     gene            complement(1473..>2159)
                     /locus_tag="VE223_07550"
     CDS             complement(1473..>2159)
                     /locus_tag="VE223_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21485.1"
                     /translation="EENNNNNNSSKKNQLYRLFVIGKKSLPEIRKSEARSSERYWARV
                     GGIFTDPNELTKELFSDEFRKGDAARPVGEGKYAIIVKHQSHTELAYMLELPNEPGEA
                     QKELGIEKEASYIISVINPKIPRQQSTSSSSAGSLPSTEQPPNYPEQILKEFDETENF
                     VSLAKDTKFIDYKNAQIILIGAREGRDVIKSEIGIEIEESLQSADIFNKLRVRKDKVP
                     IRPLMEGKLE"
BASE COUNT          647 a          359 c          393 g          760 t
ORIGIN      
        1 taacatgtga atacgtatgg ctataatatg cagaagaagt cagaccacat agtactttaa
       61 tatacggtat tgccattatt ttgcatcaac taaggaactg ttaaacattg tttggcaaag
      121 gtaagaacaa agaagagcaa gaagaagcaa aaagaaaata tgtcgaacgc ttttatatat
      181 tgttatcttc attaatgaac gaattatttg aatacgcagc aacgtttgga cacgtgaaga
      241 tgccatataa tgtgtcgttt ggattgatcc atgataaaag agattctgtg ctcctaaaag
      301 gaattgatca aaagactggt aaaaagatgt acctttacaa tacaaggata attgcaaaga
      361 tgtttgagga aagaagagaa cagatgctta aggataacac aacaaatacg ctgtttggtt
      421 ggatttcaga tgtatgttca ttatacataa gaccttttgt atacgaatat gttgtggaaa
      481 tgcagcatag aggagaaggg gccgcagaaa gaactacaag gcaaattgtt agggaattta
      541 tcgataagct gcttaatgat cctgaactaa agtatgtatt agataatatg aaagaaggtg
      601 acagcacaaa taaatcagca gtatagcaca tgttgtaacg ctgctgttag catagaaaat
      661 catacgactt acatccatat ttaattgaaa ttctataaca ataattgctt tggagcacat
      721 caacgtagct tttaatttaa gtattgcaaa ttgtgatcca taacctacac ttgtatctgg
      781 tccttctcca ggttttggca tataagacga tgaaggtatc ctaatgtccc atccaacgct
      841 cgaaatataa ggttctattt cttgcttctt ccaatcattg ggatgaactg tttggattca
      901 atctcatcaa cttctattgt cgtgaacatt ttttcatgtc atctagacta tcattattat
      961 acctcaatat gatatattct tatataacac cagtttttac gtggtttatg agattcttag
     1021 ttcgagccaa aattccagca gaagcgggaa acaaaatggt acaggatcca aactttctga
     1081 agaaccttga agaatatatg aataaagtca agcctgaagc agcatatttt ctacctcttg
     1141 atggcgatag agcaatggca tttattctta atatcgacaa taattacgag gtgccttcat
     1201 tagttgaacc tctattccaa agaatgggtg ctaaagtgga agtgatccct gtaatgaact
     1261 ttgatgattt caagaaaggt atctcaattt gaatggtttt gttaatgtat ctatgatgcg
     1321 tgtgtattca cttcctgaac tatatggtat tatcagtagt aagggaatca aggttcctag
     1381 ctcagcgtta tagtatatta ttcttttatt gttggtttat ggtaatgatt tcttatgcca
     1441 gagtatcact taggtaacca tgtagcatat ccttattcta actttccttc catcaatggt
     1501 cttattggaa ccttgtcttt tcttactctg agtttattga atatgtctgc ggattgcaaa
     1561 gactcttcta tctctatacc tatctcgctc tttattacgt ctcttccttc tcttgcgcca
     1621 ataagtatta tttgcgcatt tttgtagtct ataaattttg tatctttagc aagggataca
     1681 aagttttctg tttcatcaaa ttcctttaag atttgttctg ggtagtttgg aggttgttcg
     1741 gtactaggaa ggcttcctgc tgatgatgat gatgtagatt gttgtcgtgg tattttagga
     1801 ttgataaccg aaatgatata acttgcttct ttttctatac ctaattcttt ctgagcttct
     1861 cctggctcgt ttggtaattc aagcatatat gctaattctg tgtggctttg atgttttact
     1921 attattgcat actttccttc tccaactggc cttgcagcat ctcctttcct aaattcatct
     1981 gaaaatagtt cttttgtaag ctcgttagga tctgtaaaaa taccaccaac tctagcccaa
     2041 tatctttcag atgatctagc ttcgctcttt cttatctctg gaagtgattt tttgcctatg
     2101 acaaaaagtc tgtataactg gttctttttg ctgctgttat tattgttatt attttcttc
//
LOCUS       DASQSJ010000381         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_422460, whole genome shotgun sequence.
ACCESSION   DASQSJ010000381 DASQSJ010000000
VERSION     DASQSJ010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422460"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VE223_07555"
     CDS             complement(<1..201)
                     /locus_tag="VE223_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21486.1"
                     /translation="MTKSFSSTPSKVIVELGMGDGRLLEKLAKCDDNIRSTYIGIELD
                     KQQYENAKRRINFVNTILLNGSF"
     gene            complement(248..847)
                     /locus_tag="VE223_07560"
     CDS             complement(248..847)
                     /locus_tag="VE223_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family peptide modification chaperone"
                     /protein_id="HZC21487.1"
                     /translation="MSSQNVTTEQVYSALRKCMDPEIPVNVVDLGLIYGVQVNPENNV
                     DIKMTMTTRGCPLHDTLVSDVKRYVGKINGIGNINVEIVWDPPWNVEKMEPNIREKMG
                     FGKPKLRFQVDYERYQPLKKGQVSKQDDGSLILINPKQQGFMINQAIVDFWQTCDGTK
                     TINQLTDQFSTKLGMPRQQVEQEVVQLVQQLLEAELLNP"
     gene            complement(1736..1987)
                     /locus_tag="VE223_07565"
     CDS             complement(1736..1987)
                     /locus_tag="VE223_07565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21488.1"
                     /translation="MMRQLSERVAKAATAFNLPSAMFSTDIKITMLSSIIHQKSEEKE
                     KLLQLKEQGIIEMERPFYDWYDYVEIPTEMSVWSKEYRI"
     gene            complement(1968..2150)
                     /locus_tag="VE223_07570"
     CDS             complement(1968..2150)
                     /locus_tag="VE223_07570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21489.1"
                     /translation="MLNDLEQYANLKEAFDKLSKEVDRMRRDFFATGKEAKDQRKRPY
                     HIFEIDKKEKNDAPII"
BASE COUNT          756 a          526 c          437 g         1025 t
ORIGIN      
        1 aaaagagccg ttcaataata tggtattgac aaaattaatc cttcttttgg cattttcata
       61 ttgttgtttg tctagttcta tcccaatata agtagaacga atattgtcgt cacattttgc
      121 tagtttttct aaaagtcgtc catcacccat gcctaactca acaataactt ttgaaggtgt
      181 tgagctgaat gattttgtca tagtgtcaga ctaaatctaa ttttagatga agtgaaacat
      241 cccatgatca gggattaagc aactcggctt caagtaactg ttgaacaagc tgaactactt
      301 cttgttcaac ttgctgtctt ggcattccaa gtttagtgga aaactgatcc gtcagctgat
      361 taattgtctt tgtcccatca catgtctgcc agaaatctac tattgcctga tttatcataa
      421 atccttgttg tttcggattt ataagaatta gtgaaccgtc atcttgcttg ctgacttggc
      481 cctttttcaa aggttgatat ctttcataat ctacttgaaa tcgaagtttc ggttttccaa
      541 atcccatctt ttcccttatg tttggttcca ttttctcgac attccatggt ggatcccaga
      601 caatttctac gttaatattg ccaattccat taatcttgcc aacatatctt tttacatcgc
      661 tgacaagagt atcatgaagc ggacaaccac gagttgtcat ggtcatttta atatcgacgt
      721 tattttcagg attaacctga acgccatata taagtccaag atctaccaca tttactggaa
      781 tctctggatc catacatttt cttagtgcag aataaacttg ctccgtagta acattttgtg
      841 aagacatctg acgttcaaaa tagttgggca ttcacccgat aaatacttta ttactacttg
      901 aaagacatct tgaattgttg cattcaaagt tctatggttt gccgcatgtg tcataagaaa
      961 atatacataa taacataaca catatttttc acatgcatat tcacttatcg acttcattaa
     1021 ggttcatcga ttgatgtgta gatatttaat tcatgatcgc aggtattatt tataatggaa
     1081 ttattcagat tatagcatct tagttgttcg atttatacaa ttacgatgaa taggtactct
     1141 tctgatattg atattgacaa tatcttgatt atctttattt gttagtggca gttgcattcg
     1201 gtttcagttg tcctgaatct ataagggata ggattagtaa ttcgaacttt tcctgtcttt
     1261 cctttagttc tgttatctca ttttcatttt gcttttttag actctggctg tcttctaaga
     1321 ttgttctctt cgcttatagc caacaaatca actgctttga gatattcttg tagcatttca
     1381 tcatgagata gcctgtaata attaccatca agctggatac tatgcccatc aaaatttctt
     1441 ttactgccct gttgactttc gcccttacca aatttgtgtt aaagaacttc taagattgtt
     1501 tgtaagagac ttcatttctt accctcccct cttttcttcg ccgcccaccc ctgtcgatct
     1561 gaaatgtatg tatactccta cttgtattct tagcattcat aggacatagt acagactgtt
     1621 atgttcctga catagaacag gaacaaatca tgtcataatc tggaacggtg cagcaattaa
     1681 tgctcagtag gtttacttta gaaaaaaccc atcaatttcg gcactacatg cagaactata
     1741 ttctgtattc cttgctccat acactcattt cagtaggaat ctcaacgtaa tcataccaat
     1801 catagaacgg tctttccatc tctattatgc cttgttcttt taattgcagt aatttttcct
     1861 tctcttctga tttctggtgg ataatacttg aaagcatggt tatcttgata tctgtactga
     1921 acatagcaga tggcaaatta aatgctgttg ccgctttagc taccctttca gataattggc
     1981 gcatcatttt tttccttttt atcaatttcg aatatatgat atggcctttt tctttgatcc
     2041 tttgcttctt ttcctgtagc aaagaaatct ctcctcatac ggtctacttc cttggataat
     2101 ttgtcaaatg cttctttgag atttgcatat tgttctaggt catttaacaa tgattctaac
     2161 tcgattttat ctcggtgtct tgaaaaaaat tgtggatata taagatatgt tcgtctcttg
     2221 cttccttaca ctgcgaccaa ataagagatt ttatagcttt gcttgtgtat gtctcaactt
     2281 cctaaaaact cggcagacgg atgtcaaagc aaaagcaggt tggtaggcta ggtagttttt
     2341 actgacatca ttattaagat agaattctca ccaggctgtc agtattcaat cttttaccat
     2401 ttaatgcgtt gatgttcagt ttcgtcattt tattcgtcat tctcaattat tttggacttg
     2461 aggtattact acatatatag tcctggcttt agctcgacgg caatgtaatt tgacgggcaa
     2521 tttgacgctg atgtgcaatc aaactattat atttggtaaa tttgtgttta ttaagttgtc
     2581 aaataaattt gatatgaggg gttcctatta gccatcacat tcaaaaccta tgtatacaat
     2641 aaccaagaaa attttataat taaattcctc ctttatactc attgtgcaat cccaagttga
     2701 gcatctttga atcacggata cacatggttt attgtccttt gtgt
//
LOCUS       DASQSJ010000382         3194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_540971, whole genome shotgun sequence.
ACCESSION   DASQSJ010000382 DASQSJ010000000
VERSION     DASQSJ010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3194
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540971"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1094
                     /gene="gatD"
                     /locus_tag="VE223_07575"
     CDS             <1..1094
                     /gene="gatD"
                     /locus_tag="VE223_07575"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HZC21490.1"
                     /translation="SRPRIALISTGGTIASRIDYRTGGVHAALSASDLYSSIPELVKH
                     ASIDPEVLLNEYSENLKPEHWTLIANKVSEKVRSGKYHGIIISHGTDTMHYTASALSF
                     ALQNLPIPVVLVGAQRSSDRPSSDAALNLIGATIFSVKSNYSGVFVAMHASSSDDVIA
                     CHIGTRVRKNHTSRRDAFESIDMMPVALVKGESVEMQPPQQQYVKLQERNNSGHNNFI
                     VKSNFDSRVILLKYYPGFDPDLLSYSMMKSTYRAIILEGTGLGHINRECIPKIQKAVE
                     SGIMVFMTSQCIWGRVRMTVYDTGRDLLDIGVIPLSDMLPETAIVKAMWVIANSNSTE
                     SAKEMMQENIANEMSTVTPIMDKRLHGIE"
     gene            complement(1246..1515)
                     /locus_tag="VE223_07580"
     CDS             complement(1246..1515)
                     /locus_tag="VE223_07580"
                     /inference="COORDINATES: protein motif:HMM:NF024183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HZC21491.1"
                     /translation="MANKITKSKEKQQQQSQLDKSSNTEHIIEEIYCRFCGKVNPSTQ
                     EFCTICGMRLHIPPSAIMKACTKCSLAMNDDSVFCSGCGTKFEDV"
     gene            complement(2006..2482)
                     /locus_tag="VE223_07585"
     CDS             complement(2006..2482)
                     /locus_tag="VE223_07585"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZC21492.1"
                     /translation="MTLTIGDILGKKLESIEEMSSVQEAAKKMKDKDVSSLVVVDVDG
                     KPQGLVTERDLVRKVCVNDLSTRTVTSKEIMSSPLITIKSNSTPSAAADMMLKNNVRH
                     LLVVDDKSKSNKPIGIVTPLDFARYQEYTTNEDKEAIEKVLENYVSSSHAEPFTGL"
BASE COUNT         1021 a          559 c          579 g         1035 t
ORIGIN      
        1 aatcacgtcc aaggattgca ttgattagta ctggtggtac aattgcaagt agaatagatt
       61 atagaactgg cggagttcat gctgcccttt ctgcatctga tctgtattct tctattcctg
      121 aactggtcaa gcatgcttca atcgatccag aggtactatt aaacgaatac agtgaaaacc
      181 taaagccaga gcattggact ttgattgcta ataaagtaag tgaaaaagta aggtcaggta
      241 agtatcatgg aataattatt tcacatggga ctgatactat gcattacaca gcatcagctc
      301 tcagctttgc tctgcaaaac cttcctatac ctgttgtatt ggttggagcg cagagatcat
      361 ctgatagacc ttcttctgac gcagctctga accttatcgg tgctacaata ttttcagtta
      421 agtctaatta ttctggagtg tttgtagcaa tgcatgccag ttcctctgat gacgtcatcg
      481 cttgccatat aggaactcgt gtaagaaaaa atcatacgag cagacgcgac gcgtttgaat
      541 caatagatat gatgcctgtt gcccttgtca agggtgagag tgtagaaatg cagccgccac
      601 aacaacagta tgtaaaatta caagaacgaa ataatagtgg ccataacaat tttatagtca
      661 agtcaaattt tgatagcagg gttattttgc taaaatacta tcctggattt gacccggact
      721 tgttaagtta ttccatgatg aaatcaacat atagagcaat cattcttgaa ggaacaggat
      781 taggtcatat aaacagagaa tgtataccga aaatacaaaa ggccgtagaa tcaggaataa
      841 tggtgtttat gacatcccaa tgcatttggg gcagggtcag aatgactgta tacgatacag
      901 gtagggattt actcgacata ggcgtaatcc cattatcaga tatgttaccg gaaactgcca
      961 tagtgaaggc aatgtgggtt atcgcgaata gcaatagcac agaatccgcc aaagagatga
     1021 tgcaagaaaa tattgctaat gaaatgtcta cagttactcc tataatggat aaacgattac
     1081 atggtatcga gtagaccaat ccataaatta tctacattag taatgggaga gttaaaagta
     1141 actgtcttgc tttgactgtg tagtttatat catctggcgc aaaatctaga tctctccttt
     1201 tacgactagg ggtgacctaa agtagaaaag attttactca aatgtctaga catcttcaaa
     1261 tttagttcca caaccagaac agaatactga atcatcattc attgctaagc tgcactttgt
     1321 acatgctttc ataattgctg atggtggtat atggagcctc attccacata ttgtacagaa
     1381 ctcttgcgta gatggattaa cttttccaca gaatctgcag tagatctctt caatgatatg
     1441 ctcagtattt gagctcttgt ctaattgcga ttgttgttgt tgtttttctt tagatttagt
     1501 aattttgtta gccattcttt gaattattct gattacattc atcaagacat caagaatcta
     1561 atatcacaag gtaagagaaa acctttacct aagatatctc aaacccaccc gttttaaatc
     1621 gtttatgtcc actttttact tattaccaat attaccaact gatctttcgt ccaagtgatg
     1681 ttcttggcaa aataacaatt tgactatagg ttggaatgta aatgtgggct gatgtgtaaa
     1741 agtgatcaaa tatttgaata gctgacaaac atagatggca gcatgaaatt ttagcagcga
     1801 atgagttact gtgtcgctaa ggtatctttc gttatgcaaa cccaatttac ttactaaatg
     1861 atcctaattt cgtctgtcaa gtctcatgtg catttgaatg taaatttaag tcgttatctt
     1921 agaagaagat caagatggaa ttgatattct gtacagcgat ttccaattgt gtcagatata
     1981 acaattcttg ttgatagaca agagatcata gaccagtaaa aggctctgca tgtgatgatg
     2041 acacatagtt ttccaatacc ttttcgatgg cttctttgtc ctcattagtt gtatattctt
     2101 gataccttgc aaagtcaagt ggagtaacta taccgatagg tttgtttgat ttacttttat
     2161 catcgacaac aagtaaatgc cttacgttgt tttttaacat catatcagct gcggctgagg
     2221 gagttgagtt agacttgata gtaataagag gtgatgacat tatctcttta cttgtcacag
     2281 tcctagtact tagatcatta acacatacct ttcgtactaa atcacgttca gtaactaaac
     2341 cttgtggttt accgtcaaca tcaacaacta ctaatgaact gacatcctta tctttcattt
     2401 tcttggctgc ttcttgaaca gaagacattt cttctatact ttccagtttc tttcccaata
     2461 tatcaccgat agttaaagtc atggaaatta tactcttttt acttgctctt ttaaatatat
     2521 ggttgtaata agtcgaatta tctggttcat ctccattggg tcattgttag atatattgct
     2581 ataaaaataa aagaaaaatt acaagacaac agaataggag tttgtatttt cgctattact
     2641 aatttatctt atgttttcgt tcattcaatt ctgatagtgt ttactttgat atcttctaaa
     2701 ttgtcgccta tagatctacc aataattctg ctttatccaa tagtgattat tgtttgaagg
     2761 gaactacaat tagtagtaaa gaaatctacg attattcgcg tcgcaaagca gagcaattta
     2821 tgcccccttg ttgatctaaa gccagtttca ccctttttac tgtccttttg ctatctaatc
     2881 caaaatagta ggacagataa taggaatacc aagtgtttgg aataccgttg aacgaaaagc
     2941 tctgaaatat atcttcacga tagacatgcg tacaatataa atatcatatc agacagaaag
     3001 gcattgaatt gggtgaagaa gtatgtccta cgtgctacaa gtttcttcag tcaatatatg
     3061 acaaaaagag gatgaaaaat gttaaacaga tggtgatcaa ctacaataca ccagataata
     3121 aaagagaatg caatagcttt tatcataaga aattgactga cagtttcaaa tcttcctttt
     3181 agagactaca agta
//
LOCUS       DASQSJ010000383         2767 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_386282, whole genome shotgun sequence.
ACCESSION   DASQSJ010000383 DASQSJ010000000
VERSION     DASQSJ010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2767)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2767)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386282"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(620..895)
                     /locus_tag="VE223_07590"
     CDS             complement(620..895)
                     /locus_tag="VE223_07590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21493.1"
                     /translation="MGSNDLSDKELDDTKHQIDFLLNQANDLLESVQKNDDDDLNKNP
                     KKNSSFIQNIVYDKLSETKREEGMLLLGRIISAQQIYIELLERKITK"
     gene            complement(1243..1383)
                     /locus_tag="VE223_07595"
     CDS             complement(1243..1383)
                     /locus_tag="VE223_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21494.1"
                     /translation="MKVLKAMMERGKAGRAEKISSNAPLFQLIPRKALPPPIPVKWFC
                     VV"
     gene            complement(1449..2081)
                     /locus_tag="VE223_07600"
     CDS             complement(1449..2081)
                     /locus_tag="VE223_07600"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent F420 reductase"
                     /protein_id="HZC21495.1"
                     /translation="MKIGIVGAGNIGGTAAELFANARHEVVISNSRGPQSLASRVNSI
                     GSTVTAKTVKDTIQFGEVILLAIPWRKRQELPSSELFDGKIVIDAMNPYSENFEVIDL
                     GNSTSSEEVSKQIHVSSLVKAFNTIYYEHLRTKGRRDAPKEDRFAIFVAGDDPEAKAV
                     VSRLIEDIGFAPVDSGSLREGGRKQQPGSPIYNNPMTLEVACKRLAELPS"
     gene            2399..2533
                     /locus_tag="VE223_07605"
     CDS             2399..2533
                     /locus_tag="VE223_07605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21496.1"
                     /translation="MTVDEKKIKHLPRSTAFKSGFDRHQNKHGYPSRAMLFFPARELP
                     "
BASE COUNT          847 a          545 c          494 g          881 t
ORIGIN      
        1 cagaaaagat aacaacctta aaacaacctt aaaaatagat cgtctggcag caactgctac
       61 cagaataata aactagattg tttatttcct agattattgt cctttctgtc gtcattgttc
      121 ctgtcctttg cctgttgcaa aaagacagga attcaccatg tagtttgatt cctgatataa
      181 cccggattgc cgcagaggtc tgtgagactg caaaaaaaat aaacgataga gattcgtgaa
      241 aagtataact cctattacac ttttcaataa caaatacaat aattgaaatg gttgtcaatc
      301 cacctaaagg aagacacagt tcattgaaac catattctgc atatgggatg gtaatatatc
      361 agctttgatg aagaatgtgt tggccatgag aatctcaatg aaatcggcag gaagcctgct
      421 cgtaattaag aaaaagaaaa tcgcagcaag taccacgacg agggcaatta ttagaatagt
      481 caatctgaca ttcaacttat aaaacaaaac tcatgggaat tacaattaca aaatcacatt
      541 tgttaatttt gagtaccaga tcaatatacc ttatgcgtga tacagcaggg tcttttaccc
      601 cacaactatt atgtgagcgt tattttgtga tcttgcgttc cagtaattct atgtagattt
      661 gttgtgcaga tataattctt cccaatagca acataccctc ttccctcttt gtctcactca
      721 gtttgtcata aactatattc tgaataaagc tgctattttt ctttggattc ttgttcaaat
      781 catcatcatc atttttctgt acggattcca gaagatcatt agcttgattt agcaaaaaat
      841 ctatttggtg ttttgtgtca tctaattctt tatctgataa atcgttactg cccatgcatt
      901 attttatgct tagcatatat atgataattg tcatgaatct ggacaatgaa cggatcattc
      961 aaatacgtca cttcaattgt atgctctcct gctaggttga taaagctttt ctaccaaatc
     1021 ccatagacgt taagatagat accgccagtt tcgtaggaag ataatcattt cttaattaga
     1081 gtagcaagag catttcatta agttctaaat tagaacagaa ttaatacttg tagtatgaat
     1141 ttttgtgcta gaggtcccga ttaaagatga tgcatcatcc ttccataaga tgacgatggc
     1201 tctttaactt tgattatgat cacccaataa tggtatttgg gttcagacta cacagaacca
     1261 tttgactggt ataggaggag gaagagcctt tcttgggatg agctggaata agggagcatt
     1321 tgacgatatt ttttcggccc ttcccgcctt gcctcgttcc atcatcgcct ttagcacctt
     1381 caaggaacct gtgcagataa gcagcaggag tgcatatttt attccaactg aagtcagccg
     1441 agtggtattt atgatgggag ttcggctagg cgtttacatg caacctccag agtcatcggg
     1501 ttattataga taggtgaacc cggttgttgc ttacggccgc cttctctgag cgaacctgaa
     1561 tccacaggtg caaaacctat atcctcaatt agtcgcgata cgaccgcctt agcttcagga
     1621 tcatcaccag caacaaagat tgcaaaacga tcttcttttg gtgcatcacg acgacccttt
     1681 gtacgaagat gttcataata tatggtattg aatgccttga cgagactaga cacatgaatc
     1741 tgctttgata cctcttcgct tgaagtactg ttacccagat ctattacctc aaaattttca
     1801 gaatatggat tcattgcatc aataacaatc ttgccgtcga agagttccga tgacggcagc
     1861 tcttgtcttt ttctccaagg tattgcaagt agtatcacct caccaaattg tattgtatcc
     1921 ttcactgtct tagccgtaac agttgaccca attgaattta cacgcgatgc gagagactgc
     1981 ggtcctcggg aattactaat gactacctcg tgacgggcat ttgcaaacaa ctcagctgca
     2041 gttccaccta tatttcctgc tccaacaatt cctattttca tttacatgcg ttcccaataa
     2101 ctattcgtac gtatataaac aggagagtta atgtgaggta agtgggctac cattgcgaaa
     2161 gtcttttcat tagtatttgc attgtttgta tttgagatca gatagaggaa agctatgctg
     2221 actcattatg gctaaacatc cattcgagtt ttcgaatggc tttcattaag aagtattctc
     2281 tattaatcgt tgatttttgc tctttattag gaaatccagt tctctactgc gtttgccata
     2341 tttgaactgt aaagttcatt tctataatat gttcaaagat tctcaaataa tatgtaatat
     2401 gacggtcgac gaaaagaaga taaaacattt gcctagatct acagcattca agagtggttt
     2461 tgatagacat caaaacaagc atggatatcc aagcagagca atgctatttt ttccagcaag
     2521 agaactaccc taagggcacc gtatctcaca acatatcagc tatcatgaga aagcatcact
     2581 tagttaagac attagttgct gttggatgta taactataat ggcagcaagt cgactaaatt
     2641 ttatctatct tattcatctc ttattcatac acacttaatt taaactgtca taaatgacaa
     2701 atcatactcg tattatactg ctaagcagct gttctgacta atcatatgag ttattgacca
     2761 aagtaaa
//
LOCUS       DASQSJ010000384         2161 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_69749, whole genome shotgun sequence.
ACCESSION   DASQSJ010000384 DASQSJ010000000
VERSION     DASQSJ010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2161)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2161)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2161
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69749"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(820..1056)
                     /locus_tag="VE223_07610"
     CDS             complement(820..1056)
                     /locus_tag="VE223_07610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21497.1"
                     /translation="MMPEVSRMYLSPKDVNVEVSEINNGIYRLSGFVDTYGITFNQFL
                     INDEHPTLIHIGPIGMYQKIEEKIKELIPSKKLA"
     gene            1719..1952
                     /locus_tag="VE223_07615"
     CDS             1719..1952
                     /locus_tag="VE223_07615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21498.1"
                     /translation="MRYSIDKSWNVLGNGKGLVSQNGSYGNAFYRKILLAYNSIFMQF
                     PCPKACFDTQMELISGFALVDALRDLSVTHWYL"
BASE COUNT          645 a          391 c          399 g          726 t
ORIGIN      
        1 gcaatgatat aatttataaa gattttgccc cgcaaggacc agaattggta ggcgaatgag
       61 atgggaataa gaaggagaag agaaagatta tacttgtagt acctgagtgc gtcatatgta
      121 ctatttgaga ataagagtta atcaccttaa agtttatcca ttcatcattc aatctctgct
      181 ccgctaaagg attgttctga tcttgcattg agaagtgaat tgctgttatt gctaccttct
      241 gtccccaaat aagattgcta taatagattt atggttcttg tactcaacta actatttcta
      301 atttttgtcc taataaattt ccagaatatg caaaagtatt tttcattatt gattctgtac
      361 attttggaaa catagaacta tcaatacatg aaccatgttg tggaaaaacc atacttggtg
      421 aaagtctagc gagcctccta gtggtttgtc ttactggttc ctcactagca agattccaac
      481 ctctttataa ccggcaatca tgactgctga taagtcgtcc gatactaccg gtttgttctt
      541 tcctggttga agaaacagat ctaatggaag agtgactttg ttatgtcttc aaatatcatc
      601 atactatccc agtggtgtac atgtggggtc ataatgaatc gaagttctct tttgcccgtg
      661 ttcaatactt cattatccca aaaagatgtg gtctgctgga acgctatgcc aacctctcaa
      721 atttaacttt gaactcaggt cgctacaaag taatttagct tttggtgctt tgagaaattc
      781 cattccccca ttcgtcactt tcaaaatgca aaaatgcaac taggctagtt tctttgaagg
      841 aataagttct tttatcttct cttcgatttt ctgatacatt ccaatagggc cgatatggat
      901 taaggtggga tgttcgtcat taattagaaa ttgattgaag gtaatcccgt atgtgtctac
      961 aaatccagat agcctgtaaa ttccattgtt gatctccgat acttcaacgt taacatcttt
     1021 gggagataga tacattctac taacttctgg catcatttta tttggggtag gtgtagataa
     1081 aagtattatg actgaaaagg agactctaac atagtctagc agttctaaca gttcgctaag
     1141 gtatgactac cattgctcga agcaacaata ttacttgagc tacagaattt atttactgtc
     1201 gctaaatcta aggcttgaat aattagttag gtgataatca gagagtattt tgaaacaaaa
     1261 acgatgggaa tatttagaga aataccaatt ttttccttat taaattgcaa tggtggcaga
     1321 gaaaataaga atctttgagt tggatagcag atttaagcgc tatgctctcg agaacattta
     1381 ccgaactcaa tatctagata aaataaagtc aataatttac tggcatttgc tccagactat
     1441 gttaatgcat tggacttgta ttttcttgtt ggttctattt taagtcacga acctcactgg
     1501 atattcttct tgccttatgc tatctctata gtaaagctga taatctttgc tcgcttgttt
     1561 cctttccttt tctatctgct ctattttaaa atggcatgaa taacaataat ggcattaaag
     1621 agaaatatgc gtagtccttt tatcgtagtc tatgccttca ctctattagg atttcatagg
     1681 atgcaacata ctgatgcata tactctgaac gagttatctt gagatactct atcgataaat
     1741 cttggaatgt gttggggaac ggaaaagggt tagttagtca aaatgggtca tatggaaacg
     1801 cattctaccg gaagatctta ttagcgtata actctatttt tatgcagttc ccatgcccca
     1861 aggcctgctt tgatacacaa atggagctaa tctctggatt tgcgctggtg gatgcactaa
     1921 gggacctttc ggtcacgcac tggtatttgt gatctgcttt attacttgga atatcttctt
     1981 cccacatagc caaatttcct cttctctaaa gcgcctcgct accgttttgc gcgaaacctc
     2041 cgatctagta taaagacaat ttacttatga ttggcagcta ctattattaa caacaccgca
     2101 tatgctaaga ttgatgagtg tataaaggaa aaacctgcta aagcgtgatc aagtattaaa
     2161 t
//
LOCUS       DASQSJ010000385         3470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_386436, whole genome shotgun sequence.
ACCESSION   DASQSJ010000385 DASQSJ010000000
VERSION     DASQSJ010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386436"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..546)
                     /gene="larC"
                     /locus_tag="VE223_07620"
     CDS             complement(<1..546)
                     /gene="larC"
                     /locus_tag="VE223_07620"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:NF014072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel insertion protein"
                     /protein_id="HZC21499.1"
                     /translation="MSSTVAIIDSQTSGISGDMLLSSLVHAGANKQKILNGIFACQNF
                     LNGCKINRADFVRTTTSGLSATQFQFEYVDSLSQRRGIEMYRSLGLCCDSMNMQQRAK
                     TFVLESLKTIIRSESLVHGQEFSTVRLHETSSIDTFADLVGSAIALDDLGLFDSRIFS
                     TKVSVGGGYLKFSHGTTSNPSN"
     gene            788..1702
                     /locus_tag="VE223_07625"
     CDS             788..1702
                     /locus_tag="VE223_07625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HZC21500.1"
                     /translation="MNITIIGAGKVGAYAALSCGLRELGNVLLLDIIQGLPQGEAMDI
                     NHELAERGSDCKVSGSNNYEDMKGSDVVVLVAGVGRKPGMTRMDLLKTNESIVTDVAS
                     KIVAYARDSKFIVVTNPLDPMTYLVLKKTGVKKNNVMGMGGMLDLSRFKNFIAETANV
                     SRDSIQAMVIGEHGENMLPLTRFSSVGGIPLAQFISDHDASKIFEKTRKVAIEVISLK
                     GATVFAPGNAIASMVESIIRDKKSVIPVSTLLEGEYGASGVCIGVPAVVGSSGVEKII
                     ELKLDRIELDIFSKGVKNVKEAVNALQV"
     gene            1686..1937
                     /locus_tag="VE223_07630"
     CDS             1686..1937
                     /locus_tag="VE223_07630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21501.1"
                     /translation="MPCKFKNISNTIATSNVQVNIFIIIINVIVIIINNNIACTTSFV
                     ALLLQYDNNYNNPPLLPARANTAITTNAAPSITIFVTAK"
     gene            1934..2908
                     /gene="larB"
                     /locus_tag="VE223_07635"
     CDS             1934..2908
                     /gene="larB"
                     /locus_tag="VE223_07635"
                     /inference="COORDINATES: protein motif:HMM:NF033503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HZC21502.1"
                     /translation="MNLRTLLDRYSKGKISINDLQRQISIHSIERVANETAQLDVNRE
                     IRKEIPEVIFAKGKDYADLLEITIAAAHRNGKVLVSKVQANQLDKLCRALKKRKLQIE
                     IGKNKCSTILVFDNSNQYSNNNPDSFTSNKIPRGKMGILAAGTSDVAIAEEVRLMAKA
                     MECLTIESYDVGIAGIHRLFPALKEMISQGVGAIVVVAGMEGALPSVVTSMVNIPVIG
                     VPTSVGYGFGSDGIAALASMLQSCTPGMSVVNIDNGIGAGAFGALICNRLATTNNEGQ
                     NNNGNNSKSKIKSKYKYKNNKNIRTTAAGILTTTTRSADSTRTKKLLL"
BASE COUNT         1160 a          590 c          711 g         1009 t
ORIGIN      
        1 attacttgga tttgaggttg tgccgtgcga gaacttcagg taaccacccc ccacgctaac
       61 ctttgttgaa aatattctgc tatcgaacaa tcccaaatcg tcgagtgcaa ttgcggatcc
      121 tacaagatct gcaaacgtat ctatactgga tgtttcatgt aagcgaacgg tactgaattc
      181 ctgaccgtga accagcgact ccgacctgat aatcgtcttt aatgactcta gtacgaatgt
      241 cttggcccgc tgttgcatat tcatcgaatc acaacataaa ccaagagatc tgtacatttc
      301 tataccacgt cgttgcgaaa gagaatcaac gtattcgaat tgaaactgag tagcgctaag
      361 tccgctagtt gttgttctta caaagtctgc acgattaatt ttacatccat taagaaaatt
      421 ttggcacgca aaaataccat ttaaaatctt ttgtttattt gctcccgcat gtacgagact
      481 cgataggagc atatctcctg atataccact ggtttgcgag tcgatgatcg caactgtact
      541 tgacatgttt tttattacta taatatttct aggctatatc tgtaaatata atacttgctt
      601 actgacggga ttttgatcgt atactttttt tgcctatttg cttgtttata atagcattat
      661 aattattatt gttactattt ttgtttattt tacttaatct tttctgtcag cctttcctta
      721 tttatttatt tatttattcc ttagaaaatt tataagtagc caaataaaat aatttggcgg
      781 tttttagatg aatattacta taataggcgc cggcaaagtt ggtgcatatg ccgccctaag
      841 ttgtggtctt agagaattgg gaaatgtact gctcttagat atcatacaag gacttcctca
      901 aggcgaggcg atggatatta accacgaact ggcagagaga ggatctgatt gtaaagtttc
      961 tggttcgaat aattacgaag atatgaaggg atcagacgtt gtagtacttg tagcaggagt
     1021 gggaagaaaa ccgggaatga caagaatgga tttgttaaaa actaatgagt ctattgtaac
     1081 agatgtagcc tcaaaaattg tagcctatgc acgagattct aaatttattg tagtaacaaa
     1141 cccgcttgac ccaatgacct atcttgtttt gaaaaaaact ggtgttaaaa aaaataatgt
     1201 catgggaatg gggggaatgc ttgacttgtc aagatttaag aattttattg cagagactgc
     1261 aaatgtatct agggattcta tacaggcaat ggtcataggt gagcatggcg aaaatatgct
     1321 tcctctcact agattctctt ctgtcggcgg aataccgctc gctcaattta tttctgatca
     1381 tgatgcatca aagatatttg aaaaaacgcg aaaggtagct attgaggtta tatctctgaa
     1441 aggggccacc gtatttgcgc caggaaatgc gattgcaagc atggttgagt ctataataag
     1501 ggataaaaaa tcggtgattc ctgtatctac tctgctggag ggagagtacg gagcaagtgg
     1561 cgtttgtata ggcgttcctg ccgtggttgg ttctagtgga gtagaaaaaa taattgaact
     1621 aaagcttgat aggatagagc tggacatttt ctccaagggt gtgaaaaacg ttaaggaagc
     1681 agtaaatgcc ttgcaagttt aagaatatta gtaatactat cgctactagt aatgttcaag
     1741 tcaatatctt tatcatcatc attaatgtaa tcgtcataat catcaacaac aatatcgctt
     1801 gcactactag ctttgttgca cttttattgc aatatgataa caattataat aatccaccac
     1861 tactaccagc acgagctaac actgccatta ctacaaatgc tgcacctagt atcaccatat
     1921 tcgtgactgc aaaatgaact taaggacact gctggaccgc tattcaaaag gtaaaatctc
     1981 tattaatgat ttgcagagac aaatttctat tcactccatt gaacgagttg ctaatgaaac
     2041 tgcacaactc gatgtcaaca gggaaattcg gaaagaaata cctgaagtta tatttgctaa
     2101 aggaaaggac tatgcagacc ttttagagat cacaatagcc gcagcgcata gaaatggcaa
     2161 ggtattggta agcaaagttc aagccaatca gcttgataaa ctttgcagag ctctaaaaaa
     2221 gcgaaaactt caaatcgaaa taggcaaaaa taaatgctct actatcttgg tattcgataa
     2281 ctcaaatcag tacagtaata ataatcctga cagttttacc agtaacaaaa taccaagagg
     2341 gaagatgggt atcctagcgg ctggtacttc cgatgttgct atagcagaag aggttcgatt
     2401 aatggcaaaa gctatggaat gcttaactat tgagagctat gatgtaggaa ttgcaggcat
     2461 acatcggctg tttcctgccc tgaaggaaat gatctcacaa ggcgtgggtg ctatagttgt
     2521 tgtagccgga atggaaggtg ctctgccatc agttgtaact tcgatggtca atattcctgt
     2581 tataggcgtg cctacgtccg tgggatacgg gtttggttcc gatggtattg ctgcacttgc
     2641 aagcatgttg cagagctgta caccgggaat gtcggtagtg aatattgata acggtattgg
     2701 tgctggcgct ttcggcgcct taatatgtaa tcgattagct acaacgaaca atgaagggca
     2761 aaataataac ggtaataaca gcaaaagcaa aatcaaaagc aaatacaagt ataagaataa
     2821 taaaaacatt aggacaacag cagcaggaat actgacaaca accacaagga gcgccgacag
     2881 tacgaggaca aagaaactgc ttttgtagat aaacaaaggg taactacaaa gatagaacct
     2941 tttttactac ttgttgattg tattgagaaa aatatatcat tcatatatta ccaacatgaa
     3001 agtaatatac actgatgtat taaagaccac gatcatttga cggaagctta atgttctctt
     3061 gtttacgatt ctatttatta tgcagaatat atacatgtgt gttaagaaaa tgaatataaa
     3121 taaggtagcg aaaaagaagg aaaggaaagg aaaaacaaag aactaaaggt ctagggattc
     3181 tacaggcaat ggtcataggt taataaaaga atctatttaa aacgtttata agtgaataat
     3241 aatgtttgcg catttgattg agtagtaatg gtaatgatga taacaataac aaccttaatg
     3301 aagatactaa catgcggtga gtgtgcaaag aaggcatgac atactacgta actctcaaaa
     3361 ggaataggca acgaaaaaca aactatagaa aaagaactgc gttattattg agcagaaagc
     3421 attttatcgt aataaagata agcgatcaga atgtttcaag ccaagtctta
//
LOCUS       DASQSJ010000386         4039 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_303328, whole genome shotgun sequence.
ACCESSION   DASQSJ010000386 DASQSJ010000000
VERSION     DASQSJ010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303328"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..341)
                     /locus_tag="VE223_07640"
     CDS             complement(<1..341)
                     /locus_tag="VE223_07640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21503.1"
                     /translation="MSPPFGIFKKKNDTFETKKEISARQLHHATDSLTVSEALELLQH
                     IESERINNLASNLSPIKESVVKSLGSIERIVNNLERDDIKLEEVRFKSIVENSKRTVV
                     SSLRREASSNLP"
     gene            complement(433..1218)
                     /locus_tag="VE223_07645"
     CDS             complement(433..1218)
                     /locus_tag="VE223_07645"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HZC21504.1"
                     /translation="MSSIATVQGRDGDVLAQQKGKLNHQQQLQFAFQKSSSFVDETNF
                     MHVYGELKNLSNKAMKNVVVTATFYDSKGKLLNQFRRSSELRTLNPGDVSPFEILYID
                     TKTVNDVKNYTLSATGQQTEMKARELRITSNSSKLDLTGVYYIKGRVVNEGSKDATNS
                     MIIATLYDKDGKVVVVGRGQTEPVNISSHSEAAFDFPVTEALQTYKVKSYSLLADSDQ
                     YVVVPEFSRSTTIGLLFLMITIAVILNKTIKLVITKSTTNSHG"
     gene            complement(1385..1861)
                     /locus_tag="VE223_07650"
     CDS             complement(1385..1861)
                     /locus_tag="VE223_07650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21505.1"
                     /translation="MRRKQKERIFIFAVLGVIGLIMSSLVSLQLDNAKEQAFAEAYGR
                     LVTDSRALTQSYQTEIGKWKSKQYNNGTMISITDQYLPKFQKLIDRAKELQSTGKYSK
                     SRDFSIQSFQSELESYRHFRSFLVTGDRAEDAKSTQLLSDALRYETYAFAAFNSSH"
     gene            complement(1926..3326)
                     /gene="cysS"
                     /locus_tag="VE223_07655"
     CDS             complement(1926..3326)
                     /gene="cysS"
                     /locus_tag="VE223_07655"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HZC21506.1"
                     /translation="MRLYNTLTRLVEELDHPGNIIRIYLCGLTVYDDAHIGHARTIIL
                     FDVLRRYLLFKGYNVNFIQNFTDVDDKIISRAKKEGLTPAEIAAKYINSYFEDFDCLN
                     VLKADHYPRATENIQEMLNLIERLIEKGHAYVSNNGIYFRTKSFPGYGKLSKRSIDEL
                     KSGYRVELDPSKEDPLDFALWKFYSDAPLWDSPWGKGRPGWHIECSAMALKYFGSTFE
                     IHGGGYDLVFPHHENEIAQSEAVSEKQFAKLWLHIGMVTTNSEKMSKSLGNIVSIHKA
                     LHRWGMNTLRIYSTSIQYSKPLDYTDKLLTECMQRWRQIETCAYELLFANGEKPGELE
                     AIQKLSDESMKAFQSAMDDNMNTTLALTALMKFVAEINHYAAVDRLTKPMSQAALKVL
                     KIFINVLGLKVMEATDEEKKEIEELISRRNKLRAEKKFQSSDNIRKKLLDQYSVELMD
                     HKDRTIWKKVEAISIK"
     gene            complement(3390..3695)
                     /locus_tag="VE223_07660"
     CDS             complement(3390..3695)
                     /locus_tag="VE223_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HZC21507.1"
                     /translation="MAWLKVAHKSEIGDKKGKEINVSGTRIALFHANGKFYAIEALCR
                     HQDGSLAPGQIDGEVVECPLHSWHYNIRTGELLDYLAGVKLTTYKVDVKGNDVYLDI"
BASE COUNT         1198 a          776 c          692 g         1373 t
ORIGIN      
        1 ggtaaattag atgacgcttc tcttctaaga gaagacacca cagttctttt tgaattttct
       61 acaattgatt tgaaccgtac ttcttcaagt tttatatcat ctctctctag gttatttacg
      121 attctttcta tggacccaag agactttaca actgactctt taataggtga aagattactc
      181 gccaaattgt ttattctttc tgattcaatg tgttgcaata gttcgagcgc ctctgaaacc
      241 gttaatgaat ctgtagcatg atgtagttgt ctagcactaa tctctttttt cgtttcaaag
      301 gtatcatttt tcttcttaaa gatcccgaaa ggaggagaca ataataatat gtttataatc
      361 accataaaaa actgttatgc ttgaaaagtg atcataaact atcagtcaga tatttaaatt
      421 aattattgta gactaaccgt ggctgttagt ggtagacttt gtaattacta atttaattgt
      481 cttatttaat atcacagcta tagtgatcat caaaaataac aatcctattg ttgtagatcg
      541 agaaaattca ggaacaacaa cgtattggtc tgagtctgct aaaagggaat aacttttcac
      601 tttatatgtt tgtaatgctt cagtcacagg aaagtcaaaa gctgcttctg aatgcgatga
      661 aatgtttacc ggctctgtct ggcccctccc aacaacaact acttttccat ccttatcata
      721 taaagtagca ataatcattg aatttgttgc atctttggac ccttcattca caaccctacc
      781 tttgatataa tatacccctg ttaaatctag cttagacgaa ttagaagtga tacgcaactc
      841 tcttgctttc atttcagtct gttggcctgt tgcagacagt gtataatttt ttacatcatt
      901 aacagttttg gtatcaatat atagtatttc aaaaggagat acatcacctg ggttgagagt
      961 tcgtagctct gatgaacgcc ggaattgatt tagcagcttt ccctttgagt catagaaagt
     1021 tgccgttact accacgtttt tcatggcctt gtttgataga tttttcagtt ctccgtaaac
     1081 atgcataaaa ttagtttcat ccacgaagga agatgatttt tgaaatgcaa attgcagctg
     1141 ctgttgatgg tttaatttac ctttttgttg tgctaataca tcgccatctc tcccctgtac
     1201 agtagcgatc gacgacaata gcataatact aagaaataaa aaaatttgga acacgagcaa
     1261 acttaagaga attgatattt aagcatatta gaaagcgacc taagtatcag acattttatt
     1321 tgataatcat atatataact ccatctagat gggcatgaaa aagaccaaag aaaataacgc
     1381 taaatcagtg ggaggagtta aaagcagcaa atgcatatgt ttcatatctt agcgcgtcag
     1441 ataagagctg ggttgacttg gcatcttcgg ctctgtctcc ggtaaccaag aaactgcgaa
     1501 aatgcctgta gctttctaac tctgattgaa atgattgtat actgaagtca cgagatttgg
     1561 agtattttcc tgtggattgt aattcttttg ctctatcaat taatttttga aatttcggca
     1621 ggtattgatc agtaatagaa atcatagtac cattattgta ctgctttgac ttccatttac
     1681 ctatttcggt ttggtaactt tgggtcaatg cccttgagtc tgttacaagc ctgccataag
     1741 cttctgcgaa ggcctgttcc ttcgcattgt ctaattgcaa agatactagg gaagacatta
     1801 tcaatccaat tactcctaat actgcaaaaa tgaaaattcg ttccttttgc tttcgtctca
     1861 ttagatatac ccaactgttg gcaagagtcg tgaaataaat gttaaaacaa taaatatcta
     1921 tttccttatt taatagagat ggcttctact ttcttccaga tagttctatc tttgtgatcc
     1981 atcaactcaa cagagtattg gtcaagcaat ttttttctaa tattatcaga gctctgaaat
     2041 ttcttctcag ccctcaactt attacgccta gaaattaact cctcaatttc ttttttctcc
     2101 tcatctgtgg cttccatcac tttaagccca agaacattta tgaaaatctt taagacttta
     2161 agcgcagcct gtgacattgg tttcgtaagt ctatctactg cagcatagtg atttatttct
     2221 gcaacaaatt tcataagtgc tgttagagct aatgttgtat tcatattatc atccattgca
     2281 gattgaaatg ccttcataga ttcatcagat aatttctgta tagcttcaag ttcgcctggt
     2341 ttttctccat tggcaaatag taattcatat gcacatgtct ctatctggcg ccatctttgc
     2401 atgcattctg taagcaactt gtctgtgtaa tctaggggct ttgaatactg tatagaagta
     2461 gaataaattc tcaaggtatt cattccccaa cggtgaagag ctttatggat gctcacaata
     2521 ttaccaagcg attttgacat tttttcagaa ttggtggtaa ccattcctat atgcagccat
     2581 agtttggcaa attgtttttc agaaacagcc tcagattgcg ctatttcatt ttcatggtgt
     2641 gggaaaacca agtcataccc accgccatga atttcaaagg tactgccaaa atattttagt
     2701 gccattgcag agcattctat gtgccagcca ggccgccctt tgccccaagg actgtcccac
     2761 agtggtgcat ctgaatagaa cttccacaat gcaaaatcca gtggatcctc cttagacgga
     2821 tcaagttcga ccctatagcc tgattttaat tcatctattg atcttttgga tagcttaccg
     2881 tacccgggaa aagactttgt acgaaagtaa atgccgttat tggaaacgta tgcgtgaccc
     2941 ttttcaatta gcctttcaat taaattgagc atctcttgaa tattctcagt tgcacgagga
     3001 taatgatcgg ctttcaggac gttaaggcag tcgaaatctt cgaaataact attgatatat
     3061 tttgcggcta tttctgccgg tgttaatccc tctttttttg ctcgactgat tattttgtcg
     3121 tcaacatctg taaaattttg gataaagttt acattataac ccttaaaaag aaggtatcta
     3181 cgtagaacat cgaacaaaat tatcgtcctt gcgtgaccta tatgtgcatc atcgtaaact
     3241 gtgagaccac acaaataaat tcgaataata tttccgggat gatccagttc ttctactagt
     3301 cttgtaaggg tattatatag cctcaaattt gattaatctg gggtttggat aatatatacg
     3361 gataaggatg acacaatatt atggcagcac taaatgtcta aatatacatc atttcccttt
     3421 acatctactt tatatgtggt tagctttaca ccggccagat agtctagcaa ttcacctgtt
     3481 ctaatattat aatgccatga atgcaaagga cattcgacca cctcgccatc aatctgtcct
     3541 ggagccaatg acccatcttg atgtcgacaa agtgcctcta tcgcatagaa tttaccgttg
     3601 gcatgaaata aagctattct tgtgccgcta acattgatct cttttccttt tttatcgcct
     3661 atttcagatt tatgggccac tttgagccac gccatctttg aaaatcttct tatgttagaa
     3721 aatagggtga tataaaacat ttgcataaat aagtggatga gcagtggcta tagtttattc
     3781 aatctgtgtc aatgcattgt agtattaata cctaaggtgc attgtttaaa cattagaatc
     3841 ttattttatt gcattcatac atcgatcgtc tactcgtttt atgcacttaa ttgtatgcat
     3901 tgacctatac cgatctctgt tcgaattccc aaaatatagg aagttacgac ctcgacaaat
     3961 agaatcttcg atacaaccac aagcagtata cattactgct gctaatggag gctgagagaa
     4021 aatctacttg ggaaattta
//
LOCUS       DASQSJ010000387         2093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_423116, whole genome shotgun sequence.
ACCESSION   DASQSJ010000387 DASQSJ010000000
VERSION     DASQSJ010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423116"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..764
                     /locus_tag="VE223_07665"
     CDS             132..764
                     /locus_tag="VE223_07665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21508.1"
                     /translation="MVTTIRKDSEEVEDSRAESLALKDMYNLLLKEVQIPTLQSIPPD
                     TYQNIALVLGNLKGQRHEGIKEKIRQRTVAMISSSVEILLEIRHHKIVEHQYASRLDL
                     HSMIVTGFEYSKVTDEEKYILDGQKDSYKRRMAVLAATLGGRPKVLESISAKIRSKQI
                     VVRFIRPMERFIGVDMTKYGPFLKEDVAVLPYENARSFIEKGEAAEVDVE"
     gene            1450..1758
                     /locus_tag="VE223_07670"
     CDS             1450..1758
                     /locus_tag="VE223_07670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21509.1"
                     /translation="MTHNGIDIDQYLLFTIYPSVLIFGIGFLAKKGKMRESIKYTLQG
                     LTCIIFSLAYFVAVPNGGAEGLAIVLAIFGILLFFMARRHIVHPEGFEGQTTSPTEKM
                     "
BASE COUNT          725 a          333 c          411 g          624 t
ORIGIN      
        1 gattttacca tctatgactt tataaggcaa ctaaactatc tgttacataa ggctctacgt
       61 ctataattta agctttcagc gataagtgtc tagagaaaag aaataatgtt agaagagcgt
      121 gaaataataa agtggttaca acaataagaa aagatagtga agaagtagaa gacagcagag
      181 cagagtcatt agcgctcaaa gatatgtaca acctattatt aaaagaggtc caaataccga
      241 cacttcaatc gatacctcct gatacttatc aaaatattgc cctagttcta ggaaatctca
      301 aaggacaacg gcacgaagga ataaaagaaa agattcgaca aagaacagtg gccatgatat
      361 cttcttctgt agaaattctc cttgaaattc gacatcataa gatcgtagag caccaatatg
      421 ctagtagact agatttacat tcaatgattg taactggatt tgaatattcg aaagttactg
      481 atgaggaaaa atatatttta gatgggcaaa aagactctta taaacggaga atggcggtac
      541 ttgccgcgac tctgggcggc aggccaaaag tacttgagtc aatttcagca aaaattcgct
      601 caaaacagat agtcgtgaga tttatcagac caatggaacg atttataggt gtagatatga
      661 caaagtacgg gccgtttttg aaggaagatg tcgctgtgct tccatatgaa aatgcgcgat
      721 catttataga aaaaggagaa gcagcagagg ttgatgttga ataacaatga taatgataat
      781 aaaagaaaga tagctgttta ttaatagagt atgacgaatg gaagaccttt cctcaaatat
      841 acctgcaacc ctgaagttga ctttttcaaa ttatcagctt aagtatataa catgaaggtt
      901 tgaagatagc tgaggctttt gctatgcgat acttggtaaa ttaagagaat actatatctt
      961 ctgctaaagc aagtaatgtt tcggattctc atgtaattcc tctgcatcca tcattacaga
     1021 cagttaacat gttgacaatc atgtacaagt taacggcacc ggaatggtaa taccaatgat
     1081 agtatctaat tttttggaat gtcttgattt agaatagcct tagcaaaaat actggctgtc
     1141 agagatgata taactcgtca ggagggtagt gcagataaac acggttacaa gttcttcatc
     1201 actcaagtag acctatcttg agtatataca atacaaagat gaaaagaaaa tttgtacgag
     1261 gtattataac cgtttatttt gttattgctg tatgatgatg cagctaagaa gaaagaaaaa
     1321 gagcacatat taacaacaaa taagagacat catttaccta gtagccaatc tactaatgga
     1381 aatgcaagta aagaaaatca tttattgctt ggaaacatat tagtaataca ttatatataa
     1441 cctatattat tgactcataa tgggatagat attgatcaat atttattgtt cactatctat
     1501 ccaagcgttt tgatctttgg gatcggattt cttgcaaaga agggcaaaat gcgtgaatct
     1561 attaaatata ctttacaggg attaacgtgc atcatatttt cgctggctta ttttgtagct
     1621 gttccaaatg gcggagcaga aggccttgcc atagtgttgg cgatttttgg tattctgcta
     1681 ttcttcatgg caagaagaca tatagtacat ccagaagggt ttgaaggcca gactaccagt
     1741 cctaccgaga aaatgtagta caaatacgtg tttagtaaca tgatgcttat tgatagactt
     1801 gtataggcag ggataagcaa gggtttcttt tttcttattt ggtttcctta agcttcaaat
     1861 gctccctaat gttcatttgt ccatcttctc ttttcagaaa ctcctttctc ctctaacttg
     1921 taaactaagt tttgggttga taattcgata gacagaaatg gaaagattgt tgagcattaa
     1981 gatatcctgc agaggatgca ggaaaaaagt gccacgctaa tactaccatg ttgcagattt
     2041 cttacaagtg ccttacagat atcacggaga tcatccatct tttagataga agg
//
LOCUS       DASQSJ010000388         3637 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_387412, whole genome shotgun sequence.
ACCESSION   DASQSJ010000388 DASQSJ010000000
VERSION     DASQSJ010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387412"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(44..184)
                     /locus_tag="VE223_07675"
     CDS             complement(44..184)
                     /locus_tag="VE223_07675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21510.1"
                     /translation="MAQVIYMHGVMNSDNVLSLPSVLLLGIIVVVTTLAIGGQMAKSW
                     IS"
     gene            769..2970
                     /locus_tag="VE223_07680"
     CDS             769..2970
                     /locus_tag="VE223_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HZC21511.1"
                     /translation="MPKFKTTQDILRIIGNKEQIRNFGVIAHVDHGKTTMSDSLLAAS
                     GIISPSVAGQALALDSMKLEQNRQMTIRGANVTLFYENEGKEYVVNMIDTPGHIDFTG
                     RVTRALRAIDGAVVVSDSVEGIMTQTETVTRQALEERVRPVLYINKIDRLVKELRLDP
                     QSMQKWLSNIIAEFNRLIDIYAEPELKERWKVSIQGNSVAFGSAKDRWGFNFKVAQKK
                     GISFKDVYDAYTSTDTNAIKSLSDRAPLHEAVLGMVVQHHPPPHIAQRYRIPKIWPGD
                     LESDMGKSLLACDEKGPAVMMVTTINVDPQAGRIATGRLFSGTIKDGDEVYLVDAKRP
                     GKIQSVNIYMGNTREVVNMLPAGNIPALLGLDYAVAGETISTVKSIPAFESIKYVSEP
                     VVTIAVEPKHPKDLPKLVEALRRITVEDPNLIVKINEETGETLMAGMGVLHLEIATSL
                     LQEAGLSITTSQPLINYRETIRTKAGPVMSKSPNKHNKIFMRVEPLDENIIEMIKTGH
                     IKEDMDKKEMARILREKGWNADEAKNVAAIDIGGNILIDETKGVQFIQESMDSIRSGF
                     DDVVHSGPIAHESVRGLKFILHHFVPHEDPAHRGLAQLMPAARRSMLGSMLVANSVLL
                     EPILGIEIKCPQEQIGTVAGILSAKRGKLLNVEQKGLISIIQGEIPASETFDLSEVMR
                     GGTAGKAMWNTYFKTWQPVPQSIFKNLVTDIRKRKGLNPEPPGYDEFIDKE"
     gene            3265..>3637
                     /locus_tag="VE223_07685"
     CDS             3265..>3637
                     /locus_tag="VE223_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0051479 - mannosylglycerate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HZC21512.1"
                     /translation="MKLDLPRYTERFGAISLHGVQRVYELDSGFNGGRTTSETIRGIG
                     NEEISEIERKIAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPRQPVDRYKLEKEA
                     LEQFNRFVGKNALILHQKDPGL"
BASE COUNT         1222 a          630 c          738 g         1047 t
ORIGIN      
        1 tatattccta ctctggccag caaattcagt tatagagtta tcattaacta atccagcttt
       61 ttgccatctg tccccctatt gctaaagttg ttactacaac tattattcct agcaagagaa
      121 cacttgggag ggacaacaca ttatcactgt tcattacacc atgcatgtag attacctgtg
      181 ccataaagat attattatcc actgcaaatt acattgcaat atcgctcttt gtctcattaa
      241 gcccctatac aatctggctt acgaatcgga aatatttatc ggagataatt tcagagatag
      301 cgatatctca cattatcttc gtagagaata tctaccgttt ttattaccct caaactaaga
      361 atcacaaaca tttcttcacg agaacataga tcgtagatag ggtttcctaa tggaggacaa
      421 acttttggca tatgaagaaa ataattaccg tagttcttgt ctttggcttg tatgtattgt
      481 cctttctttg gctagtgtca aagcagttat tattataaac gcaatagtgt atctgctttg
      541 atttgtttga acgtttgcac atataaggga gaatatcttt aggaaataat attttatttt
      601 tgttgtgaat acatagttag aatattaggt tggtgcgaga tagtctcggg tactagtgca
      661 aagtaaaaag agcacttatg atggatagaa tagataacaa gtattgaaat ttaaacaaat
      721 gtaaggaaca tttaatagtc ctccaacgaa tttttttcgc ttgaatacat gccaaagttt
      781 aaaacaactc aagatatttt aaggatcatt ggtaataagg aacaaatccg taatttcggt
      841 gtcattgctc atgttgacca tggcaagacc accatgagtg atagcctctt ggctgcatca
      901 ggtattattt ctccttctgt tgcaggtcag gctctggctc ttgattctat gaagcttgaa
      961 caaaacagac aaatgactat tcgtggagct aacgttacac tgttttatga aaatgaaggt
     1021 aaggaatatg tagtcaatat gattgacacc cctggtcata ttgactttac aggaagggtt
     1081 actcgtgctc ttagagcaat tgatggtgca gtagttgttt ctgattctgt tgaaggcatt
     1141 atgactcaga ctgagacagt gacaaggcaa gcacttgaag aacgtgttag accagttctc
     1201 tatattaaca aaatcgatag actagtaaaa gaactaagat tggatccaca atctatgcaa
     1261 aaatggcttt caaatataat tgctgaattc aaccgactta tcgatattta tgctgaacca
     1321 gaactcaaag aaagatggaa agttagtata cagggaaaca gcgttgcatt tggttctgca
     1381 aaagatagat ggggatttaa tttcaaagtt gctcagaaga aaggaattag cttcaaggat
     1441 gtttacgatg cttacacttc gacagacact aatgctataa aatcactctc agatagagca
     1501 ccattgcatg aagcagtttt gggaatggtt gtacaacatc atccgccgcc tcatattgcc
     1561 cagagataca ggatccccaa aatttggcca ggcgatttag aatcagatat gggaaaatcg
     1621 cttttagcat gcgatgaaaa aggcccagca gtaatgatgg ttaccacaat taatgttgat
     1681 ccacaggcag gcagaattgc aacaggcaga cttttctctg gtaccatcaa agatggtgat
     1741 gaagtatacc tggttgatgc aaaaaggcca ggaaagattc agtcggtaaa tatctacatg
     1801 ggtaatacca gagaggtagt aaatatgtta cctgcaggca atattcctgc tttgcttggt
     1861 cttgattatg ctgttgcagg tgaaacaatt tcgactgtta aaagtattcc agcatttgaa
     1921 tcaatcaagt atgtctcaga accagtagtc acaattgcag tagagccaaa gcacccaaaa
     1981 gatctaccca aacttgttga agcgctacgc agaattacgg tagaagatcc gaatctcatt
     2041 gtcaagatta acgaagaaac aggtgaaact ctcatggctg ggatgggcgt attacatctt
     2101 gaaattgcca cgtcactttt gcaagaagca ggtcttagta ttaccactag ccaaccgttg
     2161 atcaactata gagaaactat tcgcacaaaa gcgggcccag tcatgagtaa gtcgcctaac
     2221 aaacataata aaattttcat gcgcgtagag ccacttgacg agaacataat cgaaatgata
     2281 aagactggcc atatcaaaga agatatggac aaaaaggaaa tggcaaggat tctcagagag
     2341 aaaggctgga atgcagacga agcaaaaaat gttgctgcaa tagatatagg cggtaatata
     2401 ctgatcgatg aaacaaaggg agttcaattc atacaagaat cgatggactc tatcaggtca
     2461 ggttttgatg atgtagtcca ttcaggccca attgcccatg aatcagtaag aggtctaaaa
     2521 tttatcttac atcactttgt cccacacgag gatccagctc ataggggcct agcacaacta
     2581 atgcctgcgg caagaagatc tatgttaggc tcaatgctgg ttgcaaattc agttttgctt
     2641 gaacccatac ttggtataga gattaaatgt ccacaggaac aaattggcac tgtggctggc
     2701 atactgtccg ctaaaagggg taagttactt aatgtagaac aaaaaggttt aatctctatt
     2761 atacaaggtg aaataccagc ctcagagaca tttgacctgt cagaagttat gcgtggagga
     2821 acagctggta aagctatgtg gaatacctat tttaagacat ggcaacctgt tccacaatcg
     2881 atattcaaaa atttggttac agacataaga aagagaaaag gtttaaatcc agaaccacca
     2941 ggctatgatg aatttataga caaggaataa aaaagatctt gttgagcttt gaattgcaag
     3001 atttatttta attatgcgga agaaatcagg cattgtctaa gacagcaatg gcgaaatgca
     3061 tttgttatac aacatataat aaatgtagtt catagttctt cacccttcca attattcaac
     3121 aattattcaa tccacgagtt agaatatgga gtaatcttga ttcccagact tttcatgaat
     3181 cgttttcttt tgaatttcct cttattctga attgtaaaat tgataataaa aagtgttata
     3241 aacaaatagt tgttctaact tgtattgaaa cttgacctac caagatacac tgaaaggttt
     3301 ggagcgataa gtctccacgg agttcagcgt gtatacgaat tggattcagg atttaatggt
     3361 ggtaggacaa catctgaaac tattaggggt attggaaacg aagagatatc tgaaatagag
     3421 aggaaaatag ctattgtaat tccaattaaa ggagagcgtt taaagttgct tgaaggagta
     3481 ttgagtggaa tcccccatga ttgcttgaca atcatcgtat ctaatagtcc aagacaacct
     3541 gtggacagat acaaattgga aaaagaggcg cttgaacaat tcaatagatt tgtaggaaaa
     3601 aatgcgttaa tattgcatca aaaggatcct ggattat
//
LOCUS       DASQSJ010000389         2629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_388176, whole genome shotgun sequence.
ACCESSION   DASQSJ010000389 DASQSJ010000000
VERSION     DASQSJ010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388176"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1524..>2629
                     /locus_tag="VE223_07690"
     CDS             1524..>2629
                     /locus_tag="VE223_07690"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HZC21513.1"
                     /translation="MHTSSSSQQQKQDFKLILNDNSLTFAEKAISLKNAQTKSDSHNG
                     SKVVSIAGDIVIVDVDLAMAQDSTGPLAIRSLNEMGIDKLHDPSKVLLVIDHTFPAAD
                     EKVANLHALIRDFAFKHNCMLVEGSISHQHILEYLATPGMMILGADSHTCQAGSVSAF
                     ASGVGSTEIAAAWATGRLWLRVPETIKIKLSGTFSKGVFARDLILDYIGKVGEDGANY
                     KALEWKFSNDYVKRQFSMDSRACICNASMECGAKISVFPTDETTTKFLDEHPRIKNDR
                     RGAKVEIQAGASAKYHDEFEIECGQIEPRVSGPDNVDRVHSVEELANVEIDQAFIGSS
                     TNGRIEDLEVAARVLKGRKVQKNTRCVVTPASVKV"
BASE COUNT          869 a          492 c          559 g          709 t
ORIGIN      
        1 gcgtctgtaa aatcatatga acggattttc gccattgctg aatttttatc aaatacatat
       61 attggatttt tgtctttggc ggctcactac aaaccagtcc ttcataataa agccttcaat
      121 agtattgtaa ggttggttaa ttttgagttt tgcctaccgt aatatcagtt gttgctgctc
      181 ccagggcgac gtaaatggtt gaggctatat ctgatatgat gttattatcg aggataatgc
      241 caacgctgtt accaaggcta gcaagagatg ctttctttcg attttgctga ttctttgcac
      301 gatgttatct agcaatacta ctagtcctac aatcataaaa ccaattcggt ccttgaaacg
      361 attgtgaata acgaagctcg ttgtggttaa aacacaacca aggactttgt ttaggagcct
      421 gttgcaaact gcatggttac attatcaact tcctttggta gaaaatttct aggagacgaa
      481 ttgacacact gacatagcag cagggatata gcatcgacaa agttatatta tcagggataa
      541 tagaataacc aaagcaataa aaaagatcaa aaatagtaaa gcaaggcttt tagccctttg
      601 tactacccta agcttgatta aaacttatgc agctcgcggc aatattaaca aaaattagtg
      661 atcagttgcg gcgacgtaaa acaagatcat caatacccaa gctcatagtc agaacgagag
      721 aaaaatattc ctttaacgtc ttttgaactc tgttgtctgc taacctcaac ctaacaacgt
      781 gatgctgtgg cgtagagttc gattatcagg tcactaatat gatcatactg ttctatctct
      841 taacaggttg ataccaagtc atggatatac aatcgacaat gtctgcttgc tgtgtttgcg
      901 ctataatacg ttgaaatgag attgtgttga ctcatcagac ctaaaaagaa ccgctgactg
      961 aatggatgaa cgacagaaaa ttcgtaatat tgtcataact aactgaatac cgttattcgg
     1021 acaggtatgg cgaaacagga ttaataagcg gcgatagaga attccctgag ccgggaaaat
     1081 gaaagaaggg atttaacttc tattgacgat agaggatcaa agcaaaatca tgtcaaaagg
     1141 cgcttgaggt tgaacaatag ataaacgtga gtaacttgca gcggtactgc aagtccttgt
     1201 ctcatcatat gcctcagacc aaggaagaga gaaaggtcag aaggctggat aggatgacaa
     1261 tataaagaat caaagcattc cgatgggtca taacaaaggt tcagatccgc aattcttgcc
     1321 atagtgatga gtatttcctc atttactgtt gttctacgtt gttgagtaac tcggcaatgg
     1381 tcaggaacta agtttccaaa atgaatacta gtgttcaagc ctaaaccagc acagaaaaca
     1441 ccattttaaa gtcgttaacg actgcaaaat agataattta aattcatctt atgaataata
     1501 gctgataaca caaggtgatt tgaatgcata catcatcatc ctcacaacaa caaaaacagg
     1561 acttcaaact catcctcaat gataattcac ttacattcgc agagaaggca ataagcctca
     1621 agaacgctca aacaaaaagc gatagtcata atggatccaa agtagtatct attgcaggcg
     1681 acattgttat tgtagatgtt gaccttgcta tggcacaaga cagcacagga cccttggcga
     1741 tacgttcgct taatgaaatg ggtatcgaca agcttcatga tccttcaaag gttttactgg
     1801 ttatcgacca tacatttcct gcagcagacg agaaggtagc aaatttacat gcattgataa
     1861 gagattttgc cttcaaacac aactgtatgt tagtagaagg atcaatctcg catcaacata
     1921 ttcttgaata tcttgcgact cccggcatga tgatattagg ggcagactca cacacatgcc
     1981 aagctgggtc cgtgtctgcc tttgctagtg gagttggaag tacagaaatt gcagcggcct
     2041 gggccacagg tcggttatgg ttacgagtgc cggaaaccat aaaaatcaag ctatctggaa
     2101 ctttcagtaa aggcgtattt gcacgagact taattttaga ctatattgga aaagtaggcg
     2161 aagatggggc aaactacaag gcattagaat ggaaattttc aaatgattac gttaagagac
     2221 aatttagcat ggattccaga gcttgtatat gcaatgcatc aatggaatgt ggcgccaaga
     2281 tctcggtatt cccaactgac gagactacaa caaaattctt ggacgaacat cctagaatta
     2341 aaaatgatag aagaggagca aaggtcgaaa tccaagcagg cgcttctgca aagtaccatg
     2401 atgaatttga gatagaatgt ggccagatag aaccccgagt ttctggccca gataatgtgg
     2461 atagggtaca ttctgtcgag gagttggcaa acgtggaaat tgatcaagcg tttataggct
     2521 cctccacgaa cggaaggata gaagatcttg aggtagcagc acgtgtatta aagggcagaa
     2581 aagttcagaa aaatacgcga tgtgtagtca ctcccgcatc tgtcaaagt
//
LOCUS       DASQSJ010000390         2943 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_269211, whole genome shotgun sequence.
ACCESSION   DASQSJ010000390 DASQSJ010000000
VERSION     DASQSJ010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269211"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..1457
                     /locus_tag="VE223_07695"
     CDS             117..1457
                     /locus_tag="VE223_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HZC21514.1"
                     /translation="MIVIIKKKNVLLVTAIVAVGLLAAILMIQFTVFASAQQQQKQPE
                     REQQKIIGDPQTDPTINQPSLSSSSTSIPDVFQKVENSVVQITSTTSNPNEVIIINGV
                     PATGRSTALGSGFVYDNQGHIVTNYHVINGATKADVTFTDGNTYSANVIGKDPNSDLA
                     VLQITGDFSAENVVPLSLANSSAVRPGQQVMAIGNPFGLSGTITTGIVSAKGRLLPNT
                     DTGFSIPNTIQTDAAINPGNSGGPLLNSQGQVIGMNTAIFSSTGVYSGVGFAIPSNTI
                     AKEVPILIKNGNYDHPWLGISGGKISPDLASSAGLPTNYKGVIVGSVQPGSPAEKAGL
                     KGLTQDDNGVTHIGDIITAVDGHPVRQIDDIISYIDSQKNVGDNIQLTVNRNGQAMDL
                     TATLQARPQINSASFSQDQNQNPNPNQPPNLGPIPELPQVPGFPQLPRLPPLLP"
     gene            complement(2176..>2943)
                     /locus_tag="VE223_07700"
     CDS             complement(2176..>2943)
                     /locus_tag="VE223_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HZC21515.1"
                     /translation="LFLVLRKQSLYGDALSHVALGGIAIGLFSNLYPIWTAFAVSILA
                     SLGITKLRESTKISGDSAIAVLLSAGLATGVVLIGLSGGFSLDLYSFLFGSILLISYN
                     DQLMILVISLIVLTIMYKVYRKFMYMAFDEEQAKVSGIDVTKLNYLFITLASVTVIAS
                     IRLVGVLLISSLIVIPNITAMMFGKGFKKTLLISNFTSVLCVIGGIMISYVMNLAPGG
                     TIVIISVIIFIAVISIKYSLRAFKEQRQTKQVNAIGR"
BASE COUNT         1002 a          552 c          512 g          877 t
ORIGIN      
        1 gacctaagtt gttatgtgat aataagtcaa ttaacgacag caacatttct ggttaaatat
       61 gcttcactca gttgtatagt gctataagtg atagaaacat atacagtaca caatacatga
      121 tagttataat caagaaaaaa aatgtattgc tagtgactgc tattgtggcc gttggtctgc
      181 tagcagcaat actgatgatt cagtttacag ttttcgcatc tgcacaacaa cagcaaaagc
      241 agccggagcg cgagcaacaa aagattattg gcgacccgca gacagatcca acaataaatc
      301 agccttcatt gtcgtcatcc tctacctcaa taccagatgt tttccaaaaa gtagagaact
      361 ctgttgtgca aataacaagt acaacttcta accctaatga ggtcattatt ataaacggtg
      421 tgcctgcaac tggaagaagt acagcattag gttctggttt tgtatatgat aaccagggtc
      481 atattgttac aaattatcac gtaattaatg gtgcaactaa agcagatgtt acctttacag
      541 atggaaacac atattctgca aatgtcatag gaaaggaccc taattctgac ttggctgtac
      601 ttcaaattac aggtgatttt tcagcggaga acgtagtacc actctctctt gcaaattctt
      661 ctgctgttag accaggacag caagtgatgg ctattggcaa cccatttggt cttagtggaa
      721 ctattacgac aggtatagta agtgcaaaag gaaggctgtt gccaaatact gatactggat
      781 tttctatacc aaatacgatt caaacagatg ctgcaataaa tcctggcaat tcaggtgggc
      841 ctttgcttaa tagtcaagga caggttattg gaatgaatac agctatattt tccagtacag
      901 gagtatattc tggcgtagga ttcgctattc catcaaatac aattgctaaa gaagtaccaa
      961 tactgataaa gaatggaaat tatgaccatc catggcttgg aatctctggt ggaaaaataa
     1021 gtccagattt ggcaagttct gctggtttac ctacaaatta caaaggagta atagtaggct
     1081 ctgtccagcc tggtagccca gctgaaaaag ctggtcttaa aggtttaact caagatgata
     1141 atggtgtaac gcatataggt gatataataa ctgcagtaga tggacatcct gtaagacaaa
     1201 ttgatgatat aatcagctat attgactcac aaaagaatgt aggagataat attcagctta
     1261 cagtaaatag aaatggacag gcaatggacc tgacagcaac gctacaagct aggccacaga
     1321 taaattcagc ttcattttca caagaccaaa atcaaaatcc aaatccaaat caacccccta
     1381 acttaggacc aataccagaa ctaccacagg tacctggatt tccacaacta ccaaggctac
     1441 caccattgct tccataaaca taaaatatca taccattcct ttttttcatt gcatagcgtt
     1501 agatagaata ataataataa taattggatc tatggtattt gttatatcat ctgctttgct
     1561 tgaaacttaa tcactcatta aactaatttt cttctttttt tatctattgt tactaactca
     1621 agtattgttt catcatagtg attcatcaac ttcaattcat aatgagcagc taagctaaaa
     1681 acagctaata atggtttcag aaaaaaccag caataaaatc aaagcttctt ctaccgattt
     1741 ctacgcaaga ttattaattg aaacatcgct agataaaaaa ctgactacta aaatcgaggt
     1801 attaaagata tgtctatgta tctaattaaa actgagcttg ctttttgttg tctacgcgcc
     1861 gagtcataaa agccactcac ctagatccta tgctacacta cgatgtttgt tagtgcagga
     1921 gcaaataaag tggcataaat tacgagataa gttaaagggt gatggatatc tgctcatttg
     1981 aataattctt ttgtatatta tagctgaaat aggttgtgta gcaggtttca atctacatcc
     2041 tagttggtta ggcattttgt cgaaatgtaa acgttactaa tatgtagaga gttgcattgc
     2101 catgtgcatt gcctttgtca tatccccatc gttatgataa ttaaggtaca ctttccagat
     2161 acttgaaaaa ctaaattatc tgcctattgc attgacttgc ttagtctgtc tttgttcttt
     2221 aaatgccctg agggaatatt tgatactgat tacagcaata aagatgatta ctgagataat
     2281 gacaatggtt cctcctggag ctaaattcat aacatatgat atcattattc cgccaattac
     2341 acaaaggacc gaagtgaaat tagatatcaa taatgtcttc ttaaatccct ttccgaacat
     2401 cattgcagta atatttggaa ttactattaa cgaagagata agtaaaaccc ctactaatcg
     2461 tatggatgca atcactgtaa cactggcaag tgtaatgaat aggtaattga gctttgtgac
     2521 atctattcca ctaacttttg cctgttcctc atcaaatgcc atgtacatga attttctata
     2581 caccttgtac attattgtca acacaattaa gctgatgacc aaaatcatca attggtcatt
     2641 atagctaatg agtagaatac ttccaaataa aaagctgtat aaatcaagtg aaaatcctcc
     2701 agacaatcct atcaatacta ctcctgttgc aagtccagct gacaataata cagctatagc
     2761 agaatcaccc gaaatttttg tggactctct taatttggta atacctaggg aagcaagaat
     2821 agaaactgcg aacgctgtcc atattggata tagatttgaa aacaaaccaa tagctattcc
     2881 cccaagtgca acatgtgata gcgcatcgcc atacaatgat tgcttcctta agactaaaaa
     2941 gag
//
LOCUS       DASQSJ010000391         5191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_388518, whole genome shotgun sequence.
ACCESSION   DASQSJ010000391 DASQSJ010000000
VERSION     DASQSJ010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388518"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..198
                     /locus_tag="VE223_07705"
     CDS             <1..198
                     /locus_tag="VE223_07705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21516.1"
                     /translation="PWRIRYMLLVPISVHLIPSATLNAAIFSSAGAMTQESTARLSAI
                     PSTAWRIDSVLAAIIAVVNPI"
     gene            complement(323..1426)
                     /locus_tag="VE223_07710"
     CDS             complement(323..1426)
                     /locus_tag="VE223_07710"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HZC21517.1"
                     /translation="MTRNYGSVKALDNFSLEVKSGEFMALLGPSGCGKTTVVRCIAGL
                     INPSVGQIYIGDQLVNHLQPKDRDVAMVFQNYALYPHMSVYDNIAFPLKMRKIPKQQI
                     KDKVKNISQLLEIENFLSRKPKELSGGQMQRVALGRALVREPKIFLMDEPLSNLDAKL
                     RTYMRAEIKKLQKKISITTLYITHDQLEAISMADRIAVMNSGLVQQIGTAEKIYREPA
                     NTFVADFVGSPSMNFLNLSIIESDYYNDNVAIGSNGTDLQIPINKLPFKSPVEKNIII
                     GIRPRDILFLTNEDFNGIKVKGKISFTELLGDESLVEIKIGIDKSIKVATTDISLDFT
                     IGKDVTVGMPYDKIHFFEPRTGNRLVGLQSMDR"
     gene            1759..3081
                     /locus_tag="VE223_07715"
     CDS             1759..3081
                     /locus_tag="VE223_07715"
                     /inference="COORDINATES: protein motif:HMM:NF013697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HZC21518.1"
                     /translation="MNVKKIIVFTSIIIAISLILSIGYGFINPISAQKKQVTLTAIVA
                     EPKDRWDILFKSAQQKLNEKHPDMDIKVDYRVLPYDATRTQILTAMAGRTPIDLVSLD
                     QIWLGEFAQGGFLSDLSDRAKSWGREKDWYQTNWDGGKYNGKLYGIWAWTDIRAMWYW
                     KDLLGKGGINPDSLKTWNGYIADAKQLNNVLKDQRIQGMHLVGASHSPDMWYPYLWMQ
                     GGDILKQKNGHPTKGTYWFPAFNSTAGIKALGFLKQQVDAGIKPQINHFWGQEFADRK
                     FAVMLEGSWLLGTFPHEQWPTLNQKIGMLPMFPVQNIGSKSATMMGGWILGVPETSQN
                     KDLAWELVTTMVDPQVLTPMLQKEGYLPTQKPIGEGPYAASLNSTIPYYKEMISMIPI
                     GHSRPNIPEYPQIADNIKQAIDQVYYGMKDPKQALDEAAAKSAKVLGW"
     gene            3141..4013
                     /locus_tag="VE223_07720"
     CDS             3141..4013
                     /locus_tag="VE223_07720"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HZC21519.1"
                     /translation="MLSKSIFVKAEPYLFLTPAFVILLVFLIFPLFWNVYISLHDVSL
                     ITLIKGWRYIGWQNFLDLIEDPNFQTSLKITLMFVSGSVALQFGVGLLISTLLNQKVR
                     AAGVLRALFIIPWTISAVIAAFSFKFIFDENFGILNYLFDKIGLQPINWLSDPNMVVW
                     SIVIANMWYGTPFTILFLTAGSFSINPTIYEAAIIDGASKMKTFLHITLPILKPFIVI
                     NLVLITMWSVNFFDLQLVMTGGGPLFASTTASLYMYRQAFEFGLLSKGAAAGLILVVI
                     NLVVAFSYIKLLRR"
     gene            4020..4904
                     /locus_tag="VE223_07725"
     CDS             4020..4904
                     /locus_tag="VE223_07725"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HZC21520.1"
                     /translation="MQKKRISTFDRDTATINNNIRFFTERALIYALIVIFLFITLFPL
                     VWVLSTSFKPNEEAISFPPKFLPENTTFSNYVFVLTDPGLVRSLLNSFVVSVGSTALS
                     VVVSALGGYAFARFEFKGKNLIMSIILGLFMIPVVINIVPLYTMLSNIGLLNSPIALV
                     LTFQILIIPLNILLLKNYFETIPRELEDAALIDGCSRLGVLKRITIPLSIPGFAIAAV
                     LSFRFSWNEFILPIVLANRPDSVVFQVALYQFISIYRIQWGYLTAGITLAIIPVLVLM
                     LSFQKQMIKGLTIGAIRA"
     gene            5005..5187
                     /locus_tag="VE223_07730"
     CDS             5005..5187
                     /locus_tag="VE223_07730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21521.1"
                     /translation="MSVAQNMIDHFRLQNNNNVPLTASEYDLKLNQNRTGLVLIRKPI
                     TIDDLVKRVKMELGDS"
BASE COUNT         1619 a          928 c          920 g         1724 t
ORIGIN      
        1 ccttggagaa tacgatatat gctgttagtt ccaatctcag tccatctaat tccttctgca
       61 actctaaatg ccgccatttt ctcttcagca ggtgcaatga cccaagaatc tactgcacgc
      121 ttaagtgcta tcccatctac agcttggaga atagatagtg tacttgctgc tataattgct
      181 gtagtaaatc caatctagcg gtatcgtccc aaaagagatc aaaatattaa aatcatgtca
      241 tgtttttgat ctcctcaatg ccagctcgtt attattacat aattctaatt gctaagctat
      301 catcaaaata tcattttgaa aattatctat ccatactttg caatcctact aacctattcc
      361 ctgtccttgg ctcaaagaaa tgaatcttgt catatggcat tccaactgta acgtcctttc
      421 caatagtaaa atcaaggcta atatcagtgg ttgcaacttt tatcgattta tcgatgccta
      481 tttttatttc tactaaggac tcatctccta ataactctgt aaatgatatt tttcctttta
      541 ctttgatccc attgaagtct tcgttagtta aaaatagaat gtctcttggc cttatgccga
      601 ttattatatt tttttcaaca ggtgatttaa atggcaactt gttaattggg atctgtagat
      661 ccgtaccatt tgacccaatt gcaacattat cattataata atcgctttca attatactca
      721 aattgaggaa attcattgat ggacttccta cgaaatcggc tacaaatgtg tttgcaggct
      781 ccctgtatat cttctctgcg gtccctatct gctgaactag accgctgttc atcacagcaa
      841 ttctgtctgc catgctaatt gcttctaact gatcatgtgt aatatagagc gtagttatac
      901 tgatcttctt ttgcaacttc ttaatttcag ctctcatata tgtacgtaat ttagcatcca
      961 agttgcttag tggctcgtcc atgaggaaga tttttggttc tcttaccaag gccctaccca
     1021 atgctaccct ttgcatttga ccgccgctaa gctcttttgg ttttctgcta agaaagtttt
     1081 ctatctctaa tagttgtgat atatttttaa ccttatcttt tatttgctgc tttgggattt
     1141 ttctcatttt taatggaaat gcgatattat catacacact catgtgagga taaagggcat
     1201 agttctggaa taccattgct acatcacgat cctttggttg caggtggtta actaactgat
     1261 ctccgatata tatttgacca acactaggat tgattagacc tgcaatgcat cttacaacag
     1321 tagtctttcc acatccggaa ggtcctaaca aggccataaa ttcaccagac ttgacctcta
     1381 gggaaaaatt atcaagcgct tttacactgc catagttcct tgtcaagttt tcaatcctaa
     1441 gattcataac aaacttttgc tgcttactgc gatcttgaga aaaatattaa tcttcttatg
     1501 acaaattcct ttaataaaat tattatgtca tgatgatgat acttgcatca acggataata
     1561 atagagttaa cggttctttg gaaataaaaa gttaaattca ttactatatc tctaaaagag
     1621 tagtttgtat cgacacatta ggtgtttcaa acaattgata atgataaata tatctatgta
     1681 ttcatttata taacaatgtt aattccttac gtgtagacca ctaactttta aaaatcataa
     1741 tgtcatataa gttctgttat gaatgtaaaa aagatcattg tgtttaccag tattattata
     1801 gctatatctt taatcctttc aattggatat ggttttataa atccgatctc agctcaaaag
     1861 aaacaagtta ctcttactgc aatagtagca gaaccgaagg acagatggga tattctcttt
     1921 aagagtgcgc aacaaaaatt gaatgaaaaa catcctgata tggatattaa agtcgactat
     1981 agagttttgc catatgatgc tactaggaca cagattttaa cagcaatggc aggtcgaact
     2041 cctattgatc ttgtatcttt agatcaaata tggcttgggg aatttgctca aggaggattt
     2101 ttgagtgatc tatcagatcg ggcaaagtcg tggggaagag aaaaggactg gtatcaaaca
     2161 aattgggatg gcggcaaata caatggtaaa ttgtatggta tctgggcttg gactgatata
     2221 agggctatgt ggtattggaa agacctacta ggtaaagggg gtataaatcc agactcgttg
     2281 aaaacatgga atggatatat tgctgatgca aagcagctta acaatgtgtt aaaggaccaa
     2341 agaatacagg gcatgcatct tgtgggtgcg agccattcac ctgatatgtg gtatccttat
     2401 ctatggatgc aaggaggcga catacttaaa caaaagaacg gtcatccaac taagggaaca
     2461 tactggtttc cagcattcaa tagcactgca ggaattaaag cattaggatt tcttaaacag
     2521 caggttgatg caggaataaa acctcaaata aatcactttt ggggacaaga gtttgctgat
     2581 agaaagtttg ctgttatgtt ggaaggatca tggcttcttg gtacatttcc tcacgaacag
     2641 tggcccactc ttaatcagaa aataggaatg ttgcctatgt ttccagtaca aaatataggt
     2701 tctaagagcg cgacaatgat gggtggatgg attcttggcg tccctgaaac ttcacaaaat
     2761 aaagatctgg catgggagtt agttacaact atggtagacc cacaagtgtt gacacctatg
     2821 ctgcaaaaag aaggatacct tccaactcag aaacccattg gtgaaggacc ttatgcagca
     2881 agtttgaact ctactatacc atattataag gaaatgatat ctatgattcc gataggacat
     2941 agtagaccta atataccaga atatccacag atagctgata acataaaaca ggctatagat
     3001 caggtgtatt atggtatgaa agatcctaaa caagcactag atgaagctgc cgcaaagtca
     3061 gcaaaggttt tgggttggta atcaattaac aattaacaac taacagttaa cagaaagtga
     3121 caatttaaat cctatagaaa atgttgtcca agagtatatt tgtaaaggca gaaccatatc
     3181 tatttcttac tcctgcattt gtaatcctac ttgtttttct aatatttcca cttttttgga
     3241 atgtgtatat ttcattacat gatgtgtctc taattaccct tattaaggga tggaggtata
     3301 tcggttggca gaactttctt gacctaatcg aggatcctaa ttttcagacc tcacttaaaa
     3361 tcacacttat gtttgtctca ggatcagttg ccctacaatt tggtgtaggc ttgctcattt
     3421 cgactttatt aaatcagaaa gtaagagcgg ctggagtatt gcgtgcatta tttattatac
     3481 catggacaat ttctgcagtc atagctgcat tttcattcaa attcattttc gatgaaaatt
     3541 ttggcatatt aaattatcta tttgacaaga taggtttaca accaattaat tggctttcag
     3601 atccaaatat ggtagtatgg tcaattgtaa ttgcaaatat gtggtatggt acaccattta
     3661 ccatcttatt cttaactgca ggttcatttt caataaatcc gactatatac gaagcagcga
     3721 taatagatgg ggcgtctaaa atgaagactt ttttacacat aacgcttcct atacttaagc
     3781 cctttatagt aattaatctt gtactaataa caatgtggtc tgttaatttc tttgatctcc
     3841 agctagttat gactggaggt ggtccactgt ttgctagtac aactgcatca ctttatatgt
     3901 acagacaagc atttgaattc ggtctgcttt ccaaaggcgc agctgcagga ctgatccttg
     3961 ttgtcataaa tctagttgta gcgtttagtt acattaaact tcttcgaagg tagaaaaatt
     4021 tgcaaaagaa gaggataagc acttttgaca gggatactgc taccatcaat aataatatta
     4081 gattctttac agagcgagct ttaatctatg cattaattgt tatattcttg ttcataacat
     4141 tgtttcctct tgtttgggtg ctttcaacat catttaagcc aaatgaagaa gctatcagct
     4201 ttccacctaa atttctgcca gagaatacaa catttagcaa ttatgttttt gtgctaactg
     4261 atcctggtct tgtgcgtagt cttctcaata gttttgtagt tagcgtgggc agtacagctt
     4321 taagtgttgt ggtgagcgct ctaggtggat atgcatttgc aaggtttgaa tttaagggta
     4381 aaaatctgat tatgagtata atattggggc tctttatgat acctgttgtt ataaacatag
     4441 taccattgta tactatgtta tctaatatag gcctgctcaa ttcacctata gccctagtac
     4501 ttacattcca aatattgatt ataccattaa acatactttt gctaaaaaat tactttgaaa
     4561 ccataccaag agaactagaa gatgctgctt taattgatgg atgttctaga ttaggggtat
     4621 taaagcgaat taccatacca ttatcgatcc ccggttttgc catagctgcg gttctctcat
     4681 ttagattttc ttggaatgaa tttattcttc ctatagtttt agcaaacaga cccgactcgg
     4741 ttgtatttca agttgcgcta tatcagttta tttcaatata cagaattcaa tggggctatc
     4801 taactgcggg cataactctt gctattattc ctgtactggt tttaatgcta tctttccaaa
     4861 aacaaatgat taaggggcta acgataggtg caataagagc atgataaaac cataaaaaaa
     4921 ctctaatgca tacttttgtg tcccatcaaa gctttgattt ttagacatca tgcatcttta
     4981 tcagaatcac catacccaaa ttatttgtca gtagcacaaa atatgattga tcatttcaga
     5041 ttacaaaata ataataatgt gcctcttacc gcaagtgaat atgatcttaa actaaaccaa
     5101 aatagaacag gattggttct tattcgaaaa ccgattacaa tagatgattt agtaaaaaga
     5161 gtaaaaatgg agctaggaga ctcatagtaa a
//
LOCUS       DASQSJ010000392         3125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_269380, whole genome shotgun sequence.
ACCESSION   DASQSJ010000392 DASQSJ010000000
VERSION     DASQSJ010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269380"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..352)
                     /locus_tag="VE223_07735"
     CDS             complement(125..352)
                     /locus_tag="VE223_07735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21522.1"
                     /translation="MFVVKKLGKNGSWNAISLIDENGSFRGEARFESKKEAQRYLDEY
                     KNKIRSQQELKIFSESAASNDQNKKTGYVRR"
     gene            480..1166
                     /locus_tag="VE223_07740"
     CDS             480..1166
                     /locus_tag="VE223_07740"
                     /EC_number="6.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017178 - diphthine-ammonia ligase
                     activity [Evidence IEA];
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine--ammonia ligase"
                     /protein_id="HZC21523.1"
                     /translation="MRLAALYSGGKDSTFSVLKVKELGHEVVCLVSMYPSADDSLLFH
                     YPNIRLTNYLAQAMQIPLTSFAVEKKSKEKEFQALREAVLQVKSDYDIQGIVHGVISS
                     KFQNELFNRICLDIHIAMFTPLWNVNPLQYMYELISKKFEIKIVGVSAMGLEKDWLGR
                     SIDKNSITLLESLSRKYGFNLAFEGGEAESLVLDCPLFTRRLDIKKANIHWDGQRGIF
                     EILDVALIQK"
     gene            1172..2539
                     /locus_tag="VE223_07745"
     CDS             1172..2539
                     /locus_tag="VE223_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HZC21524.1"
                     /translation="MLDNLRTGLRSALKKIVGATDINEELIDSVCKDVQRSLLQSDVN
                     VKLVISITKNLKDRAINEKPPKGLSRKDHIITILYNELATLLGYSGETIKAVEKSHNS
                     EDKVISFESGKQSIILMLGIQGSGKTTVTAKLARWLTRHGYRAGVIGADTWRPGALAQ
                     LKMNCSKINVNVYGNEDSKNPVDIVTKGLEYFRQQNTDVVIIDTAGRHKEESGLLAEM
                     NSMYKVSIPNLVLLVIDGTIGQQAYNQAKAFHQAAPVGGIIITKLDGTAKGGGALAAA
                     AATNARVMFIGTGERIDDIEQFSPTRFVGKLLGMGDIKALLEMAKSLELQADENQTKR
                     LLSGKISIEDFYSQMENVGKMGFRNVIDSLPGLSGMIKEDDLDVLQAKMEKWRFIIQS
                     MTREEKKDPHLINDSRRKRIARGAGMTEHEIKDLIKQYDNSKAMMKQTKGRQMQGMLR
                     RFGFG"
     gene            2698..>3125
                     /locus_tag="VE223_07750"
     CDS             2698..>3125
                     /locus_tag="VE223_07750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21525.1"
                     /translation="MNIIDLIVEKMVADVERKYEFSSFLIGLTIPTQIYEHEDQVRAR
                     FKIRGRESIKKELVNEIGSRFKKITKKRLEHHLPDIRINIIIDNNNDFCITARASPLI
                     LSGRYIKRCRGLPQKKVRCIQCSEKEGNICSHFELNADKT"
BASE COUNT         1055 a          515 c          670 g          885 t
ORIGIN      
        1 attacacaag taaaaacatt gtcatggtaa cagaaaaatt cgcatgttag agtttaacga
       61 tacgtccatt tttgatattc ttgatgaaac cggaagtgct cgcctagtta atttttgtta
      121 ctcttcatct acgcacgtat ccagttttct tgttttgatc attagatgcc gcagactcag
      181 aaaaaatttt cagttcttgc tgtgacctga ttttattctt gtattcatca aggtatctct
      241 gtgcttcttt tttagattca aaccttgctt cccctctgaa tgaaccattc tcatctatga
      301 gactaatagc gttccaactt ccgttcttgc ctagcttttt gacaacaaac atctcagtcg
      361 aattataata gccagctagt tatatttatt taagtaattt tccaatcact atgtctataa
      421 gggcagaagg attggtagag gtcaaaccgt ttaatagaag taagatataa gtaaatttat
      481 tgagactagc agcactttat tctggtggca aagacagcac tttctctgta ttaaaggtaa
      541 aagagcttgg ccatgaggta gtatgcttgg tttcaatgta tccatctgca gacgacagcc
      601 ttttatttca ttacccgaac attcgattaa cgaattatct tgctcaggcg atgcaaatcc
      661 ctctcacttc gtttgctgtc gaaaagaaat ctaaagagaa ggaatttcaa gcattgagag
      721 aggcagttct gcaagtcaag tctgattatg atatccaagg aatagtccat ggggttatat
      781 cgagcaaatt tcagaatgaa ttgtttaaca gaatttgttt ggatatccat atcgctatgt
      841 ttaccccttt gtggaatgtg aatcctttgc aatacatgta tgaactcata tctaaaaaat
      901 tcgagatcaa gattgttggt gtctctgcaa tggggttgga aaaagattgg ttaggaagat
      961 caatcgataa aaattcaata actttgttag aatcgttgag tagaaagtat ggttttaatt
     1021 tagcatttga aggaggagag gcagagtctc ttgtgttgga ttgtccatta ttcaccagaa
     1081 ggcttgatat caagaaagca aatattcact gggacggaca gcggggaata tttgaaatat
     1141 tagatgttgc attaatacag aaataaagag tatgctagac aacttaagaa cagggcttag
     1201 aagcgctctc aaaaagattg tcggagcgac agatattaat gaagagctaa ttgactcggt
     1261 ctgcaaagat gttcaaaggt cattgctgca atctgatgtc aatgtaaaat tagttatttc
     1321 aattacaaaa aatctcaagg atcgagcaat aaatgagaag ccccctaaag gactttcgag
     1381 aaaggatcat attatcacta ttctttacaa cgagctcgca acattacttg gatacagcgg
     1441 agaaacaatt aaggccgttg agaaatcaca taattctgaa gacaaggtta tatcatttga
     1501 atcaggaaag caaagtatta tcttaatgct cggaattcag ggcagtggaa agaccactgt
     1561 aacagccaaa cttgctcgtt ggttaactag gcatggatac cgtgccggtg tcataggagc
     1621 tgacacatgg cgtcctggag cacttgcaca actgaaaatg aattgcagta aaattaacgt
     1681 taacgtttat ggtaacgaag acagcaagaa tcctgtggat atcgttacta aaggtttaga
     1741 atattttaga cagcaaaata ctgatgtcgt aatcattgat actgctggaa ggcacaagga
     1801 agaatccgga cttttggccg aaatgaatag catgtataaa gtatcgatac ctaaccttgt
     1861 acttttggtc atagacggga caattggcca acaggcctat aatcaggcta aagcattcca
     1921 tcaggctgcc cctgtaggag gcattattat aacaaagctt gatggaactg cgaagggagg
     1981 tggggcgctt gcagcagccg ctgccacgaa tgccagagta atgttcatag gaactggaga
     2041 gcgtattgat gatattgagc agttttctcc tactcgattt gtaggaaaac tacttggaat
     2101 gggtgacatc aaagctctcc ttgaaatggc aaaaagcctt gaactacaag ctgatgaaaa
     2161 ccaaactaaa agattgctaa gcggtaagat atcaattgag gacttttata gccagatgga
     2221 gaacgtcgga aaaatgggat ttcgaaatgt tattgatagt ttaccgggtt tatcggggat
     2281 gattaaagag gatgaccttg acgttcttca ggcaaagatg gagaaatgga gatttattat
     2341 tcaatctatg acaagggaag agaaaaaaga tccgcatctc attaatgact ctagacgaaa
     2401 gagaatagca agaggtgcag gaatgaccga gcatgagatt aaagatctga taaaacaata
     2461 tgacaattcc aaagccatga tgaagcagac taaaggtaga caaatgcagg ggatgttgag
     2521 aagatttggt ttcggataat accagaacaa gatttgctat cacaaagact aaacacatat
     2581 tacatactgt gtagttattg tctttctaga caactagtaa aaactaaaag aattgtaaca
     2641 atagataaga tcaaacaagc tggaggcttt aatgattgct acatctgcaa tgggcttatg
     2701 aatataattg atttaatagt agagaagatg gtcgcagatg tggaaaggaa atatgaattt
     2761 agttcctttc taataggact aaccattcct actcagatct atgaacatga agatcaagtc
     2821 agagcgcgat ttaaaatacg tggaagagag agtatcaaaa aagaacttgt aaatgagatc
     2881 ggatctagat ttaagaaaat cacaaaaaaa aggcttgagc accatctccc agatattagg
     2941 ataaatatta tcattgacaa caacaacgat ttttgtatta ctgcaagggc gtctcctttg
     3001 attctgtccg ggcgctatat aaagaggtgc agagggctgc cacagaaaaa ggtcaggtgt
     3061 attcagtgtt ctgagaaaga aggcaatata tgcagtcatt ttgaactgaa tgccgacaag
     3121 actat
//
LOCUS       DASQSJ010000393         3219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_269441, whole genome shotgun sequence.
ACCESSION   DASQSJ010000393 DASQSJ010000000
VERSION     DASQSJ010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269441"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="VE223_07755"
     CDS             <1..505
                     /locus_tag="VE223_07755"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HZC21526.1"
                     /translation="NRGVNYFTDGIKGHRVPAPHTIELGLHNGTIDAIDIRTGKTKWE
                     YPTAFPPRVSPLVTNGLVFAGYIPFTEKAKIKSTANTATTNTTTAATQPSSAAMTYTV
                     KSGVLLALDRQTGKKVWEFDLDAPIGAVGPSIGDGMLFVPTGKIQGLSKEEGGGGSIV
                     AFGLPPS"
     gene            837..1022
                     /locus_tag="VE223_07760"
     CDS             837..1022
                     /locus_tag="VE223_07760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21527.1"
                     /translation="MPVKLGRKKYEKFSDASAAIQKKKGISKDRANAYVASVERKQGI
                     EPRTGTKTKTSRRKAEK"
     gene            complement(1246..2214)
                     /locus_tag="VE223_07765"
     CDS             complement(1246..2214)
                     /locus_tag="VE223_07765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HZC21528.1"
                     /translation="MSSERIVSFLPSSTEILYEIGAGTQIVGVTHECKYPDDAKRKPR
                     VINSSFDSNKMCSKEIDEKIIGLMQSGTDIYVINDEKLREAKPDLIIAQGVCKVCAPF
                     TKEIDRATSILGYTPDILVLDPHDLDDILISIMDIAERVGRVTEGRKLVVSLQKRIDK
                     IRMRTGRRIGEEISKKNNKPKVLCIEWISPFFTAGHWIPQMVEIAGGINGLSSRAQPS
                     RRIRDIDEIIKFDPDKIILMPCGFDIHRTLREAKALETYDRWKSLRAFQNNQVYAVNA
                     GSYFSKPGPRTITGLEVIANIIDPKAFEGIQVPTDSFIKLGEIIVS"
BASE COUNT         1015 a          606 c          592 g         1006 t
ORIGIN      
        1 caataggggt gtaaattatt ttacagacgg cataaaaggt catagagtac cagcccctca
       61 tacaatagaa cttggcttac ataatggaac tatagatgca attgacatca gaacaggaaa
      121 aacaaagtgg gaatatccaa cagcatttcc gccaagggtc tcaccattgg ttactaatgg
      181 attggtattt gcaggttata ttccttttac agaaaaagca aaaataaaga gtactgctaa
      241 cactgccacc actaatacta ctactgcggc cactcaaccc agctccgcag ctatgacata
      301 cacggtaaaa tcaggagtgc ttttggcgtt ggatagacaa acaggaaaga aggtgtggga
      361 gtttgattta gatgctccga ttggagcagt cggaccatcc ataggagatg ggatgttgtt
      421 tgtaccgact ggtaaaattc aaggattgtc taaagaagaa ggtggagggg gctcaatagt
      481 tgcatttggg ctgcctcctt cttaattgag cgagttattt taactgcatt atgtattcta
      541 ttaataaaca gaagagacaa cattaacgtc tccctgctac cattgtatgt gtctggggcc
      601 tatcaatcca atctgacata tagcaccttt cattttgtca tcacctatgc cctttccttg
      661 aatttgttgt tacgttgaca gcatgaagtc aaccatcctt tgacttttct gacaatgcga
      721 tgaatggagt aatactgaaa caggtcctca gatttacggg tatgaattat gatttgcaaa
      781 gagcttcagt taataaataa agaaagaatt atagttgaga actaaaaact attggcatgc
      841 cggtaaaact gggaaggaag aaatacgaaa aattttcaga tgcatctgca gcaatccaga
      901 aaaagaaggg tatatcaaaa gatagagcaa atgcgtatgt tgcgtcagta gaacgtaagc
      961 aaggcataga accaaggaca ggaacaaaga caaagacgtc tagacgaaaa gcagagaaat
     1021 gacgctgtta ctccattatt gtggtagcag tagtaaaggc agtcgctatt gcatgatccg
     1081 actgtactcc tatctcgctt tctgattttg tctatggcaa atactttcta ccgacatgac
     1141 tatcttttca tcttcatgta tggtaagtgt ttcagcgacc catgttacca ataactattg
     1201 tttctattgc agaaaattct acgtattttc atagcaatac cttttttagc tcactatgat
     1261 ttcacccaat tttataaacg aatcagtggg cacttgaatg ccttcgaatg cttttgggtc
     1321 aattatattt gctattactt ctaaccctgt tattgttcta ggaccaggtt tgctaaaata
     1381 tgatcctgca ttaactgcgt agacttgatt attttgaaaa gcacgcaatg atttccatct
     1441 atcataggtt tctaatgcct tggcttctct tagtgttcta tggatatcaa aaccacaagg
     1501 cattaaaatt attttatctg gatcaaattt tataatctca tcaatatcac gtatacgacg
     1561 tgaaggctgt gcacgcgaac ttaggccatt aatacctcct gcaatctcta ccatttgagg
     1621 aatccaatga ccagcggtaa agaaagggct tatccactca atgcaaagta cttttggttt
     1681 attatttttc ttggaaatct cctcaccaat tcttcgtcca gttctcatcc ttatcttgtc
     1741 aatacgcttt tgtaatgata ctaccagttt gcgtccttct gttaccctac caacccgttc
     1801 tgctatatcc attatgctta tcaaaatatc atctaaatca tgaggatcaa gtacaaggat
     1861 atccggggtg taacccaata tagaagtagc gcgatctatt tcctttgtaa atggagcaca
     1921 tactttacat acgccctggg caataataag atctggtttt gcttctctta gtttctcatc
     1981 gtttattaca tatatatctg tgccagattg cattagacct ataatttttt catcaatctc
     2041 tttgctacac attttattgg aatcaaagga agaatttatt actcttggtt ttcttttagc
     2101 atcatccgga tatttacact catgtgttac acctactatt tgagtgcctg caccgatttc
     2161 ataaagtatt tcagtagaac taggtagaaa tgagactatt ctttctgaag acatggatat
     2221 aatgcagaag taataggcta ttttaaagat atattcttct ctattagtag gttgctggat
     2281 atatacgcat taatattgag atactgccaa ttatgagtta atcggagaga tcatgaaaag
     2341 gcagccattg cagataacct cttttgataa atatcatgat tgatgtatcc tcgggcttag
     2401 ttttaacagc caagactgta tttacaaatc tattcttttc atcatcgctt aagttcttga
     2461 cgtttttccg tacgtgtgcg cacaagattc atgatggttt tgctcatata agaaaattat
     2521 ttattggcac gaggagttga aactgctgtt attaaagata atgtcattaa aataacggct
     2581 ctgtcaaaac catctgttct tgataaggca aagctatgta atatggccat atcatacata
     2641 tggtaaaaga atcaaaatat gttaaactag catattctat gttatgtatc ttgaagaatg
     2701 gcaggatgcc gctatttctt cataggaaga gcaatcacat tttcacagtc tggcagcatc
     2761 ttgttctgct tactatcaga ccgtatgggg gtaagagtta cagtatgttt acagcaaaat
     2821 gattggtaga agattattaa ctaaggagtt ccccaatcta tccagaataa tacatcattt
     2881 cacaacgtta cagaaattta cagatagaat cacaggtacc gttctagaaa ggataatttc
     2941 ttcttctttc attcttcttt cattctcctt acaacaacta ccaaacgaat attccttgga
     3001 atatactcat ctggattcaa gccaagccat gcatcgcagt attacactga aagaagcaga
     3061 ttgaggaaga aaggataaga aaattgtata ttcgaggtgc tgatatgcta aaacagatta
     3121 ttatctgcac catcaagata aggagcgacc ctaaaagaca tggcaacacg gattttcaga
     3181 ccaatcataa caagaacagc ggaaattatg ccattgtca
//
LOCUS       DASQSJ010000394         2103 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_388826, whole genome shotgun sequence.
ACCESSION   DASQSJ010000394 DASQSJ010000000
VERSION     DASQSJ010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2103)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2103)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2103
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388826"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..187
                     /locus_tag="VE223_07770"
     CDS             32..187
                     /locus_tag="VE223_07770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21529.1"
                     /translation="MDTEAVDLIFYRQAFYLSIPLTLLAGVFTVVAPEAYKKTKAGKK
                     KGSERLA"
     gene            complement(699..1055)
                     /locus_tag="VE223_07775"
     CDS             complement(699..1055)
                     /locus_tag="VE223_07775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21530.1"
                     /translation="MTASINPDDVDINAKSKEKDEISYLKSMDSLMDELSKKYTNLFE
                     NKGLSDEEILNYGFSIEDISKERGNGGFGLTTNVSNKTLQRFANESKYIKVDLQAGSF
                     HITKEGIIACRRIQSL"
     gene            complement(1188..1835)
                     /locus_tag="VE223_07780"
     CDS             complement(1188..1835)
                     /locus_tag="VE223_07780"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HZC21531.1"
                     /translation="MDSKGYYAILGVPEKAKYIEIRAAYRLLAKKYHPDRNKSDFAED
                     MIKKINAAFEVLSNREKRRQYDEIAFDNYWLYNEDKVVDNDGGDNNNNRNYGYYQVRS
                     DQSSYHPNRHENAKINNNNDLDAELKTQSVDLLDIPKSRFHLTVEPSLCMAFGSCETL
                     APKVFVVEKNKIFNPKAIVRSETGADFDSILAAAQTCPTKAIRIIDRYTGEQIFP"
     gene            complement(1884..>2103)
                     /locus_tag="VE223_07785"
     CDS             complement(1884..>2103)
                     /locus_tag="VE223_07785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21532.1"
                     /translation="HDAILILLSSSLGISGYSSFSFFSFFNVFFAAITVAQTLHFFNR
                     PMYVIHFYAIALNDMYRLSALIYTYTSL"
BASE COUNT          680 a          358 c          378 g          687 t
ORIGIN      
        1 ataatacctg tgctagtatg gcagctcgat aatggatact gaagcagtag acttgatatt
       61 ttatagacaa gcattctatt tgtcaatccc attgacttta cttgctggag tatttacagt
      121 agtagcacct gaagcctata aaaaaacaaa agcaggaaaa aagaaaggat ctgagagatt
      181 ggcataggtg aataatgata acaggatagt tgacagtagc gccttcgtag acattatgtt
      241 gcagagtgaa tctaactaga ttatttgaca acttttgaat tagcctattc atcatcctct
      301 gctgctgtaa taaacaaaga ctcggatgaa aaaggctcct tttgaattca ctgcattagt
      361 gaattgtact ccgatccttt aacatttggt caaatagagt cgtattttcc attggtaaag
      421 gttcgctgtg cagagtggcg ccaatagcta taggtaatgc acaagcagag tctttgtccg
      481 agtatgacaa acaaaaatac aaatagatga tacctgatgc tgcagaaact gtcctagggt
      541 ttttggactt tgataggact gtttagttgc ttgattcacc gtcagaggag ttctatcaaa
      601 agaaacttga tattgaaaga agcagattaa acgaatggtt gatgtaataa tactcaatcg
      661 gttctaagac agtatcaaac ataccagaga aatacatgtt atagactctg tattcttctg
      721 catgcaatta ttccttcttt agtaatgtga aagctgcctg cttgtaaatc aacctttatg
      781 tatttggatt cgtttgcaaa tctctgaagt gttttgtttg atacatttgt ggttagaccg
      841 aatccgccat taccacgttc tttggagata tcctctatgc taaatccata attaaggatc
      901 tcctcatcac taagcccttt attttcaaac agatttgtat actttttgga aagttcatcc
      961 atcaatgaat ccattgactt taggtatgat atctcatctt tctccttact tttggcatta
     1021 atgtcaacat catcaggatt tatagatgct gtcataacca agttaaacta ggcctatgtt
     1081 taatttattc ttctcctata ctggtttagt ttataatgag aagagaaaca gaaaagatga
     1141 tatatataca tatgcagata gatgccacgc ctatgcatat gataaaacta agggaaaatt
     1201 tgttcgccag tatacctatc tattattctg attgcttttg ttggacaagt ctgagctgca
     1261 gcaagtatgc tatcaaagtc tgctccagtc tctgatctga ctattgcctt tggattaaat
     1321 attttattct tttcgactac aaagactttg ggtgcgagtg tttcacaact gccaaatgcc
     1381 atgcaaagag aaggttcgac agttaagtga aaacgagatt ttggaatatc taatagatct
     1441 acggattgtg tttttaattc agcatctaaa tcattattat tgtttatttt tgcattttca
     1501 tgacggttag gatgatatga tgattgatcc gatcggactt gataataacc ataattccta
     1561 ttattgttat tgtcgccgcc atcattgtct actactttat cctcattata taaccaatag
     1621 ttatcaaagg ctatttcatc atattgcctt cttttctccc tatttgaaag aacctcaaaa
     1681 gcggcattaa ttttctttat catatcttca gcaaagtcag atttgtttct atcaggatga
     1741 tacttttttg ctaggagcct atatgctgcc ctaatctcaa tgtatttagc cttttcaggt
     1801 acgccaagaa ttgcataata acccttagaa tccaagagac atataccagt atatgatata
     1861 cacaacaaca aaggtaaaag tgtttagaga gatgtgtatg tatagatcaa agcagataat
     1921 cgatacatat catttaatgc aatagcataa aagtggatta catacattgg tctattgaaa
     1981 aagtgaagag tttgagcaac agtaatagca gcaaaaaaga cattgaagaa cgagaagaag
     2041 ctaaaagaag aatatccaga tatgcctaaa gatgagctta acaagatcag tatagcatca
     2101 tgc
//
LOCUS       DASQSJ010000395         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_269560, whole genome shotgun sequence.
ACCESSION   DASQSJ010000395 DASQSJ010000000
VERSION     DASQSJ010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_269560"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..548
                     /locus_tag="VE223_07790"
     CDS             102..548
                     /locus_tag="VE223_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HZC21533.1"
                     /translation="MSVRVTNKTMVTIQVARDIKAPLEKVWDVISDIDNEPRYWRGTK
                     SIKNISKNGNVTEREVVIAFKESKCKETVVLEPKKSVKVNISQGPIKGSKTITIKSAG
                     VNKTTVHVLWDIRLAGFMGVFTGMIKKHIKQGTQDALERIATAATD"
     gene            553..1800
                     /locus_tag="VE223_07795"
     CDS             553..1800
                     /locus_tag="VE223_07795"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HZC21534.1"
                     /translation="MMDGIVLQVVIMHTELEIMCGILTAIMVGIFGTWIYFIGYMLKS
                     LKQSPTLQSICKSLVTKNIKVSVILPARNEEKYIAKCLESLTRQDYPNFEIIAINDSS
                     TDGTADIMYQYARKSSSIVVVNAKPKPDGWVGKNWACYEGYLRASGDLLLFTDADTIH
                     LPSVMSLAVGQLEQQNLDALTAIPKLLCKDVWTKITLPMLSIFLHSRFSALRVNDPKT
                     KTGYFFGSFYMITRRAYEMVGTHKVVKHELVEDGALGGRVKEGKFKMKMVRGERYIDA
                     VWARDFKTLWHGLRRLMISIYSQDRRGATLMTIAVFFLLFEPFLLVPYALIISQQTDD
                     ILLSRILLDINLATIVIIFLANVIQSKFGVFQSPMYAIASPLSGAIVSVSFISSILDA
                     KKVGAVNWRDRKYTVNENQHPLK"
BASE COUNT          725 a          375 c          479 g          646 t
ORIGIN      
        1 agacaatgag gtaaatctcc gcgtattagt tgagttcagt ttcattgttt cttgattttc
       61 catcaagaag cggatatctt agtattttct taacatataa tatgtctgtt agagtaacga
      121 acaagacaat ggtgactatt caggttgcac gtgacataaa agctccgcta gagaaagtct
      181 gggacgtgat atcagatatt gacaatgaac cgcgctattg gcgtggtacc aaatctatca
      241 aaaatattag taagaacgga aatgtcactg aaagggaagt agtaatcgcc ttcaaagaat
      301 ctaaatgcaa agaaacggtt gtattagagc caaagaaatc agtgaaagta aatatttcac
      361 agggacccat aaaaggctca aaaaccatta caataaaatc tgctggagtt aataaaacta
      421 cggtacatgt gctgtgggat attagacttg ccggttttat gggagtgttt actgggatga
      481 taaaaaagca cataaagcaa ggaacacagg atgcgctaga gaggatcgca actgcagcga
      541 cagattgagt ccatgatgga tggaatagta ttacaggtgg ttataatgca tacagagctt
      601 gaaataatgt gtggaatcct aactgcgata atggttggaa tttttggcac gtggatttat
      661 ttcataggat atatgctaaa atctctcaaa caatctccga cgttgcaatc tatctgcaaa
      721 tccctagtta ctaagaatat caaggtgagt gtaattcttc ctgctcgcaa tgaagaaaaa
      781 tacattgcaa aatgtcttga aagtctaaca aggcaagact acccgaactt tgaaatcatc
      841 gcaatcaatg actcatcaac cgacggaact gcagatatta tgtatcaata cgcaagaaaa
      901 agttcctcta tcgtggtcgt taatgctaaa ccaaagccag acggatgggt tggaaaaaat
      961 tgggcatgct atgagggata tttgagagca tcgggagatt tattgctgtt tacagatgca
     1021 gatactatac atttaccttc ggtaatgtcg ttagccgtcg gacagcttga acagcagaac
     1081 ttggacgcac ttacagccat acccaaactt ttgtgtaaag atgtttggac aaaaatcaca
     1141 ttgccaatgc tttccatttt ccttcacagt agattttcgg cattacgtgt gaacgacccc
     1201 aagacgaaaa ctggttattt ttttggtagt ttttatatga tcaccagacg cgcttatgag
     1261 atggtaggta ctcacaaggt cgtaaaacac gaacttgttg aagatggtgc actggggggt
     1321 agagtgaagg aaggaaaatt caaaatgaaa atggttcgtg gtgagcggta tatagatgct
     1381 gtctgggcac gagatttcaa gactctctgg catggacttc gcaggttaat gatctcgatt
     1441 tatagtcaag acagaagagg agctactctg atgacaattg cagtattctt cttactgttt
     1501 gagccttttc ttttagtccc ttatgctttg ataatatctc aacaaacaga tgatattctt
     1561 cttagtcgca tacttttgga tatcaatcta gcaacaatag ttattatatt cctggcaaat
     1621 gtgatacaat caaaatttgg tgttttccaa agtccgatgt acgctatagc ctcgcctttg
     1681 agcggggcga tagtttctgt ttcatttata tcgtctattc tggacgcaaa aaaagtgggc
     1741 gcggtgaatt ggagggatag aaaatatacg gttaacgaaa accagcatcc tctcaagtaa
     1801 tccgttcaac tagatcttct cctattgtct agatttggga aatgaactta caatttgtat
     1861 ctaagttagg tatttatatt atgctgagat aacatggcct atctattctc gaacctacta
     1921 aatgaggaaa gcaggtccac atagtaggga tgccgaccag gatattagtt attgcgaaaa
     1981 ttttagcaaa gggtagatcg tttaataaaa atttgcaact gtcgtcagcg gacacattgc
     2041 ttagtcgcgt tgtaatatag cgagcctcta attgtttatt aataatggac agaaatactc
     2101 atttgtagga agaaagattt ttgatatgct gaatagcaca atagatagaa atctagatga
     2161 catcttacag aagatcttag aaggaaagcc attatcaaaa gagcatgcgt atgagataat
     2221 taatt
//
LOCUS       DASQSJ010000396         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_424244, whole genome shotgun sequence.
ACCESSION   DASQSJ010000396 DASQSJ010000000
VERSION     DASQSJ010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424244"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..196)
                     /locus_tag="VE223_07800"
     CDS             complement(<1..196)
                     /locus_tag="VE223_07800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21535.1"
                     /translation="MSIMTFVDINSTACNTVSFTLFSRLDISILMWNIETKVSKWTLM
                     LWHQCHISMFLLINKYPLSTK"
     gene            complement(261..548)
                     /locus_tag="VE223_07805"
     CDS             complement(261..548)
                     /locus_tag="VE223_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HZC21536.1"
                     /translation="MKISELKAGMRGVSIIGNIESITEARTVNLRSGGTAQVADAVIS
                     DETGSIKLSLWDDQINAVKQGDKISVENGYTQAFRGENSLNIGKYGKLTKA"
     gene            706..948
                     /locus_tag="VE223_07810"
     CDS             706..948
                     /locus_tag="VE223_07810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21537.1"
                     /translation="MGTKFRNRLGRYDYHPPDIVSGLVNFRIMGVILKTDRLALIIVE
                     IQLVLCSRSIVFTKQMHFTHMEKVGKPYKPLVLLLF"
     gene            1234..1354
                     /locus_tag="VE223_07815"
     tRNA            join(1234..1273,1307..1354)
                     /locus_tag="VE223_07815"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1270..1272,aa:Leu,seq:caa)
     gene            1493..1888
                     /locus_tag="VE223_07820"
     CDS             1493..1888
                     /locus_tag="VE223_07820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21538.1"
                     /translation="MTEKTNVVSPSHSAKLKSSYENLLREAATLFPKVDQKFLLNILQ
                     LQTSYRDWEGSAMLKVVYPADKVDLEMKKEWIYKKYQRIPSIEENRTVRFKGVRMYVE
                     ELEKLLNEDPEIEYITGSATLTPSDAYST"
BASE COUNT          695 a          376 c          408 g          708 t
ORIGIN      
        1 gcttcgtgga taaagggtat ttgtttatta ggagaaacat cgagatatga cattgatgcc
       61 aaagcatcaa agtccattta gaaactttgg tttcaatatt ccacattaat atggatatgt
      121 ctagtcttga gaaaagtgta aaagatactg tgttgcatgc agttgagtta atatctacga
      181 aagtcattat gctcatgaat gacttatgtg atgaatgatc ttgatttaat gtaacagatt
      241 tccaaaatta aaaaatgaga ttatgctttc gtaagtttgc cgtattttcc gatatttaaa
      301 ctgttttccc cacggaacgc ctgagtgtac ccattctcaa cagatatttt gtcaccctgt
      361 tttacagcat taatttggtc atcccataac gaaagtttaa tgctgcctgt ttcatctgaa
      421 attactgcat ctgcaacttg ggccgtacct cctgatctga ggtttacggt tcttgcttct
      481 gtaatgcttt cgatgtttcc tattatgcta actccgcgca ttcctgcttt tagctcacta
      541 atcttcattt ttatcttatt gaattcaact taatatcgta ataaaggttc tgggttacac
      601 actagctacc ataatagatt gaccacagtc agtgcatacc agttctgtac gtgctgctgc
      661 aagttgagaa tatccttgac cttggctacc ttacaagtag ggataatggg tactaaattc
      721 aggaacagac ttggaaggta tgattatcat cctcctgaca tagtctcagg actggtaaat
      781 ttcagaataa tgggtgttat tctaaagact gacagattag cattgatcat cgtagagatt
      841 cagttagtat tatgcagtag atctattgta ttcactaagc aaatgcattt tacgcatatg
      901 gagaaggttg gaaaaccata taagccattg gtattgcttc ttttctaata ataagggtaa
      961 atttacagac ttgagtagtt atcattataa ttagtatgta gaagcacaag tggaaccaaa
     1021 agtaatacta tacgacaaac tcttcatctt gcaagatcaa aagataatgc agaaccaaac
     1081 agatacccag tgttctagtg tgaaattagc ttacgtctta gtttgttgcc atattcgttg
     1141 tatccattat tttgttggta tgtgacattc attgatcaat atttgtatca atagtaactc
     1201 tgaaataagg attcagagaa aaagcgcatg tatggagggg tagcgaagcc aggtcaaacg
     1261 cgcaggactc aagattaaaa caaattctgc ataagatgaa tgtgtgatcc cgtcccccag
     1321 gggttcgtgg gttcaaatcc caccccctcc accaattctt taaacagatt tagagtttta
     1381 attggattgt ggaaagtaac agttgcaaaa taatcctggg caggaacgga gaattcaaag
     1441 tgtcgaataa ttataaaggg ttaaaagaaa taatttccat tcattattta taatgactga
     1501 gaagacaaat gttgtgtcac cgtctcattc tgcgaagcta aaatcaagtt atgagaactt
     1561 acttcgggaa gcagcaacac tatttccaaa ggtggatcaa aagtttttgt taaacatctt
     1621 acagttgcaa acaagctatc gcgattggga aggcagtgcc atgctgaaag ttgtttatcc
     1681 tgcagacaaa gtggatttgg aaatgaaaaa ggaatggata tataaaaagt atcaacgaat
     1741 tccatctata gaagaaaata ggacagttag atttaaagga gtccgtatgt atgttgagga
     1801 actggagaaa ttattgaatg aagaccccga aatagaatat attactggtt cggcgacgtt
     1861 gaccccttct gatgcgtatt cgacatagtt tagtatcttt attcaagcga aaaactgatc
     1921 ttagatgata tctttgagta aacccattat acttagcgag gaaccttgat tcccttgttg
     1981 ctgataatac catatagttc tggaagtgaa tatacaaaac ctacatgaac acaatctgct
     2041 ttctcatcta aagacattgc aattctccat tattcatcaa tacctctgca attctatttt
     2101 ttttattatc ttttaatata actctattct gatctattgc tatcttctct ataaacggta
     2161 agtgtttggc aaatacttca tctttta
//
LOCUS       DASQSJ010000397         3508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_389303, whole genome shotgun sequence.
ACCESSION   DASQSJ010000397 DASQSJ010000000
VERSION     DASQSJ010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389303"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(696..989)
                     /locus_tag="VE223_07825"
     CDS             complement(696..989)
                     /locus_tag="VE223_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HZC21539.1"
                     /translation="MPVAIIPDISEQHCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTKAIFWMRPMDYTPGQPIPLKKNAVFVKGWEEG"
     gene            1271..2518
                     /locus_tag="VE223_07830"
     CDS             1271..2518
                     /locus_tag="VE223_07830"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HZC21540.1"
                     /translation="MSFDISKEQEIFLEGVDHICKSIRSYEEKCYLEERLNDKVIPEF
                     GKIGMLRCPISRKYGGLGYDILTYILAIERIGKEGSSMRTFFSAHTSIGQMVIQGWAN
                     EEQKREYLPKTCDGKSIMAFALTEPLAGSDPSSIITKFEDKGDHYILKGKKHWIGNGT
                     FANLMTTYAKEDSDSGSGNRNVSAFIVNGDSAGVRIEEMKDKLGLLTVKNAEVHFDNC
                     IVPKKNLLGQKGQGLNIAYSALIDGRLSVAAGAIGVMMDCLNESVMYSKIREQHGSLL
                     AKKQLIQEHIARIAINIESSRWLVYRAALARQKLHDYVEELKEVDDQWQSKLSRSNIE
                     YSMLRNEADRFVTMAKFHASNSAFDSANRAVQIFGSVAYRKTNRVARHFLDSRAIIIY
                     EGTNEVLELKVASQILGEDYRAY"
     gene            complement(2557..3159)
                     /locus_tag="VE223_07835"
     CDS             complement(2557..3159)
                     /locus_tag="VE223_07835"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZC21541.1"
                     /translation="MQGEGGCNVASKQFIKNLRKFANQYGVPLILDEVQSGMGRTGKW
                     WAFEHYEVKPNIMSIAKALQVGATAYDKIFDPIERGVLSSTWGAGSRIDMIVGTKIID
                     VINRERLLANATAMGNTLKKGLNEIVEKNGIIEVRGIGLMIGIEFDTQEKRDNKLIEL
                     FKQGLLLLPAGQKAMRVIPPLTITEEEIQEGLAIMTEVLL"
     gene            complement(3072..>3508)
                     /locus_tag="VE223_07840"
     CDS             complement(3072..>3508)
                     /locus_tag="VE223_07840"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZC21542.1"
                     /translation="DFYCEEHAKIAQKVSSIVPENFKTFFINSGAEAVENAIKIAYKK
                     MGPLPGVSCTNAFHGRTLGALSFTFSKPIQKANFPELPVKKIKFCINDNDLEIDSIER
                     LLRENKIAFILSKSSKVKADVMLQVNSLLKILENLQINMESH"
BASE COUNT         1114 a          644 c          624 g         1126 t
ORIGIN      
        1 agcaacttac aagcattgca tacgtctcca cattataaat gcctctacta taatcactca
       61 agagatcctc atcccttagt ggctgtcttt tagataataa ttgcaattct gaaaccgtat
      121 cttctatacc agataggtcg acgtcattat ggttggacat cacaatatta tagaactgcg
      181 ggattattaa ggataatgta cataatgtac aaggataatc tgggatgtta tattatcatt
      241 tctacgatac tagcggataa taatatataa ttagggaggg taataaatat tgaaaaaacc
      301 acgcttgtag gtgtcgtcac tggggtagac tggcgacatg ccaaaaattt ttattttatc
      361 atggtagatt gaatattcat atattaataa atgaacacat attaacgctg atttctatga
      421 attgcattca gtctgggaaa tcactgatca ctgtttaaat tgtatttctg tatttctata
      481 tcttctaact cctgctctct gcgtattaag caaaggttaa ggctataatt tttaaactaa
      541 tatctagcaa tgccgacaag tcatttgaca tataatctaa ataatctact ttatatgaac
      601 cagattgtaa ggttttataa ttattactgt atcagtttct gttgaagaaa acaaaaattt
      661 aaaaaaagga atttaggaat tttttaggat ggtgtttagc cttcttccca accttttacg
      721 aacactgcat tcttcttcaa tggaattggt tgtcctggtg tatagtccat tggcctcatc
      781 caaaatattg cctttgttgg gcaaacgcca atgcaagctc catcagagat gcatctttct
      841 ggataaaata caaatgcttt acctctcttc catccttcta caggttttac tctcagtaca
      901 tctggaccaa gagcggtaca aatttctacg catagcgcac agccaataca gtgttgctca
      961 ctaatatctg gaattattgc gactggcatc taattcacta atttcgatct atatctaaac
     1021 tatttaaacc ctatgccatt tgtataacag tgatataaaa tatatattta cttaattttg
     1081 gctatagttg ctgctcatct agaagtttct tctataggaa ggaatctgct aacacaatac
     1141 ttactcttat cattgtcaag gagcaattat ccactaaatc aagtacagat acgaattttt
     1201 gtatctttaa aacacgcttt ttatatctac agtggataag aattttgtgt catactacaa
     1261 tttttcaaga atgagtttcg acatttctaa agaacaggaa atttttctgg aaggcgtaga
     1321 tcacatttgc aagtcaatac gttcctacga agagaaatgc tatcttgagg aaaggttaaa
     1381 tgacaaagta attccagaat ttggaaagat tggaatgctt agatgtccta tatcaagaaa
     1441 gtatgggggc ttaggttacg atattctcac atatattctt gccatcgaaa gaataggcaa
     1501 agaaggcagt tccatgcgta ctttcttttc agctcatacc tcaataggtc aaatggttat
     1561 tcagggatgg gcaaatgaag aacagaaaag agaatatctt ccaaaaacct gtgatgggaa
     1621 aagtataatg gcatttgcac ttacggagcc gttagcaggc agcgatcctt cttctataat
     1681 tacaaaattt gaagataaag gtgatcatta tatcttgaaa ggaaaaaaac actggattgg
     1741 taatggtaca ttcgctaatc tcatgacaac ttatgcaaaa gaagatagtg acagcgggag
     1801 cggcaacaga aatgtatctg cattcattgt taatggagat tctgctggtg tcagaataga
     1861 agaaatgaag gacaagttag gactattgac ggtcaaaaat gcagaagttc atttcgacaa
     1921 ttgcattgtc ccgaaaaaga acttgcttgg gcaaaaaggt caagggttga atattgcgta
     1981 tagtgcattg atagatggcc ggctaagtgt ggctgcaggt gccataggtg taatgatgga
     2041 ttgtttaaat gagtccgtca tgtattcgaa aataagagaa caacatggtt cgttgctagc
     2101 gaaaaagcag ttgatacaag agcacatagc aagaatcgcc ataaacattg aaagttcccg
     2161 ctggttagta tatcgtgcag ctttggcaag acaaaagctt cacgattatg tggaagaact
     2221 caaggaggtg gacgaccaat ggcaatccaa attgagcaga agtaacattg aatattcgat
     2281 gctacgaaac gaggcagata gatttgtaac tatggcgaaa tttcatgcaa gcaactctgc
     2341 atttgattca gcaaacagag ctgttcaaat ttttggatct gtagcttaca gaaagacaaa
     2401 tagggtagca aggcatttct tagattcacg agcaattatc atatatgaag gaacaaatga
     2461 agtacttgaa ctaaaagtgg catcacaaat tcttggagaa gattatagag cttactaatc
     2521 attttatgcc accttgcatc tatcattatc ttataatcac aataacactt cagtcattat
     2581 agctaatcct tcctgtatct cttcttccgt tatagttaaa ggaggtatta ctctcattgc
     2641 cttctgacct gcaggtagta ataggaggcc ttgcttaaat aactctatta atttattatc
     2701 tcttttttcc tgtgtatcaa attcgattcc aatcatcaag cctattcccc ttacctcaat
     2761 tatgccattt ttttctacaa tctcatttaa cccttttttt aacgtgttcc ccatggctgt
     2821 tgcatttgca agaagtctct cacgattaat gacatctatt attttcgtgc caactatcat
     2881 gtcaattctg ctacctgcac cccaggtact agagagaaca ccacgttcaa taggatcaaa
     2941 tattttatca taagccgttg cacccacttg aagtgctttg gcaatactca tgatatttgg
     3001 ctttacttca taatgttcaa aagcccacca tttgcctgtt cgacccatac cagattgcac
     3061 ctcatctaag attagtggga ctccatattg atttgcaaat tttctaagat ttttaataaa
     3121 ctgtttactt gcaacattac atccgccttc accttggatg acttacttaa aatgaacgcg
     3181 attttatttt ctctcaatag tctttcgatt gaatcaatct ctaaatcgtt gtcattaatg
     3241 caaaatttta tcttcttaac tggcaactcg ggaaagttgg ctttttgtat gggcttactg
     3301 aaagtgaaac tgagtgcgcc tagagtccgc ccatgaaaag cattagtaca tgatactcct
     3361 ggtagcggtc ccatcttctt atatgcaatc tttattgcgt tctcaactgc ttcagcgcca
     3421 ctattgatga aaaatgtctt aaaattctct ggaacaatag aagatacttt ctgtgctatt
     3481 tttgcatgtt cttcacaata aaaatcct
//
LOCUS       DASQSJ010000398         2107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_389930, whole genome shotgun sequence.
ACCESSION   DASQSJ010000398 DASQSJ010000000
VERSION     DASQSJ010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389930"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            106..1311
                     /locus_tag="VE223_07845"
     CDS             106..1311
                     /locus_tag="VE223_07845"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HZC21543.1"
                     /translation="MWTKELYKINPKQVIIAGGGYAGIQAALMLEHLLKGSGTKISLI
                     DKKSYHTLLPSLPEIISKRGFSTIDYRDIIQHKRIQFIQATITNIDLSKKLIDITDQQ
                     NNRSSLKYDFLAISLGSQPFLPDIEGLKEYALLFNTIHDAQRIAERISDPSLNGNIVI
                     AGGGATGVELAGEIASVTNIRQQKYNTKSSDVNIILVSPHILSGFPDSAIRWAKAYLE
                     SLGVKLLVCSGCHVLHVKLDIIYLANGSHVTYTMFIWTGGVSASSLLKKTGLKIGEKG
                     RVAVNKYLQAEGTQDVFVVGDAALVLNSKGKALPTNAYFAEQHGRIAAQNIHALLEGK
                     EKKLQEYRPEEAGSTFAISIGKDFAVSRVGGLDLFGYSASKLKKLIKMKYLKDISGSP
                     LAWKEFYKF"
BASE COUNT          705 a          371 c          385 g          646 t
ORIGIN      
        1 agggacttat gcgcagttct taactctttt aattaaatta gataatctga agacaatagt
       61 accgcccatt ctcaagatcg tttgtaataa cttataatta ccatattgtg gactaaggag
      121 ttgtataaaa ttaatcctaa acaagtaata atcgctggcg gaggttatgc tggaatccag
      181 gctgctctta tgttggagca cttacttaaa gggtcaggta caaaaatttc attaatagat
      241 aaaaaatcat accacacttt acttcctagc ttgccggaga taatatcaaa acgtggattt
      301 tcaactatcg actacaggga tatcatacaa cataagagaa tacagtttat tcaagcaacc
      361 ataactaata tcgatctcag taagaagtta attgatatta ctgatcagca aaataatcgc
      421 tcttcattaa aatatgattt cctagctata tctttaggca gccaaccttt tttgcctgat
      481 attgaaggat taaaggagta tgcattgcta ttcaatacaa tacatgatgc acaaagaata
      541 gctgaaagga tttcagatcc aagtctgaac ggcaacatag tcatagcagg aggaggcgca
      601 acaggagtag agcttgctgg agaaatagca tctgtaacaa acatacgaca acaaaaatat
      661 aatactaaat caagtgatgt taacatcata ttagtatctc cacacatatt atctggtttt
      721 ccagattctg ctataagatg ggcaaaggcc tatcttgaaa gtttaggagt taagctactt
      781 gtatgttctg gatgccatgt cttacatgtc aaactagata taatatatct tgcgaatgga
      841 agtcatgtta catatacaat gtttatctgg actggtggag tatctgcatc atctctctta
      901 aagaagacag gattgaaaat tggtgaaaaa ggaagagttg ctgtcaataa atatctgcag
      961 gctgagggaa cccaggatgt ttttgtggtt ggagatgccg cattagtact taacagtaaa
     1021 ggtaaggcct taccaacaaa cgcttatttt gctgaacaac atggccggat cgcagcacaa
     1081 aatatccatg ctctattaga aggaaaagaa aaaaaattac aagaatatag acccgaagaa
     1141 gccggatcta cttttgccat ttcaatagga aaagactttg ctgtgtccag ggtaggagga
     1201 ttagatcttt ttggttattc cgccagtaaa cttaagaaat tgattaaaat gaaatatcta
     1261 aaagatatat ccggttctcc tttagcctgg aaggaatttt ataaatttta accttccaaa
     1321 caaagataat tatcttctcc ttcttctact gctattgctg ctattataac cacatagaca
     1381 taaattaaat ttgatcattt tagacccgat gcagtttatt agtcagaaga ctcctactac
     1441 agaacgtact cgttgttcca tgtaaccaaa aatatcataa ccatcatcac tactgtacaa
     1501 ccctgactct tggctcttca tgctgcaatt tgtagtgaag ttctagtctc tttgtcatcg
     1561 aaggagatgc atatgataac agccaggata tgggttgagc attgatacta tgtttctact
     1621 tataagaaat ggaataagaa gcctacctcc tcttacttgc tagcgagatc attgtaagac
     1681 atttcactat aagattctgt gggagatact ttgctgacaa ggtgcagttt tgaaaaaggg
     1741 ttataaaagt caactaattt ggctgagaat acgtagctgt ttacaacctt ttcatatatt
     1801 gaaacaaatc atatatttta ccatacacgt taggacgaga aatattttgc tatggcataa
     1861 tcgtctatcc aaagttctgg gtttgcggca gtccttatca ttttgaccgt ctttctcatc
     1921 ctagatggtt atcagtatat cctagaccac catcatgaag caccctcaaa accatggtcg
     1981 gcaaaatatg agagggtaaa tcttgctaag gctctaacct taggtttgta aattagtttt
     2041 gattcgtatg cctgtaatgt gaaaataata tctttataca aaggaaaaaa gctttcttgg
     2101 tacttag
//
LOCUS       DASQSJ010000399         4395 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_424909, whole genome shotgun sequence.
ACCESSION   DASQSJ010000399 DASQSJ010000000
VERSION     DASQSJ010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4395
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424909"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..540)
                     /locus_tag="VE223_07850"
     CDS             complement(<1..540)
                     /locus_tag="VE223_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HZC21544.1"
                     /translation="MRTKFGFTQGLNVARLGLDESQVITACQIADRMDYDSIWAMDHS
                     NVPQWKNAIVNDAWIMLAAIGVLTQNVEVGTCVTDAIRRHPSAIALSTITLDRVTKGR
                     GILGIGAGEAQNVVEFGIDFTKPVAKFREQLEVIHRLFESGVDNHVSYNGEYYKLNGA
                     SLQTKSIRKPRPPIYIAAGA"
     gene            complement(980..2251)
                     /locus_tag="VE223_07855"
     CDS             complement(980..2251)
                     /locus_tag="VE223_07855"
                     /inference="COORDINATES: protein motif:HMM:TIGR00306.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HZC21545.1"
                     /translation="MNIKLIYVLLDGIGDLPHPLLNNSTPLDAACTPNMDALARNGCM
                     GRVISVGKGIAPQSDIAVFNMLGYNFNNGTYVGRGVIELMGSNIDFHEGDLALRGNFA
                     TVDSDLKIIDRRAGRIISKEEAQAVCKTLQEKISFADKDASVVIQPTVAHRVTIRFRH
                     NHIKLSDKITNTDPAYDKVDGMGVSKPTPTNIYIEKSKPEDNTEGSKIAARLVNEFTE
                     QTIKWLKGHPVNNARINTGKNPMNVILLRDSGNRYPTVEPITKKYDSEVACLVDMPVE
                     VGISKALGMTPFNAGEVDDYENKAIAAAKIMEKYSILYVHIKGPDEFGHDGDAIGKKN
                     NIEEIDRRFFGTLLKRLTVNDTVIVISGDHSTPCQRKGHSDDPVPLLISGNNVLNDNS
                     TRFTEHCASRGSLGLLMGVNVLNTAINMTRQ"
     gene            2457..2807
                     /locus_tag="VE223_07860"
     CDS             2457..2807
                     /locus_tag="VE223_07860"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HZC21546.1"
                     /translation="MSIVALQMDIGGTEWIILALLGLFLLFGSKKLPTVSRTLGKAVL
                     EYEKARELVRKNIEDATRVAEEPTKYLMGPKITAPVSSEREKLEHIAISLGINHLGKT
                     DEELRRLISNRMQG"
     gene            3339..3800
                     /locus_tag="VE223_07865"
     CDS             3339..3800
                     /locus_tag="VE223_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HZC21547.1"
                     /translation="MKEKSKVKEISNRNNREGLRGWLNPTRYGWERVSYWLQRLTGVY
                     LLIYFIGHVIETSSITGGVDAWNETLQFTQNIWGHIILILLIGTSAFHATNGIRLIFT
                     QGGKGLGNPGRPDYPYDAISLNYRQKSGIWIALILAAVAMLYGSNVLFSGK"
BASE COUNT         1393 a          823 c          790 g         1389 t
ORIGIN      
        1 agcgcccgca gctatatata ttggcggcct tggtttgcgt atacttttcg tttggaggct
       61 tgcgccattt aatttatagt attctccatt gtaactcaca tggttatcca cacctgattc
      121 aaaaagtctg tgtattactt ctagttgttc cctaaatttg gctacaggtt tagtaaaatc
      181 aattccaaat tcaacgacat tctgggcttc cccagctcca atccccagga tacccctccc
      241 ttttgtaacc ctgtccagag taatggtaga gagtgctata gcagaaggat gtctccttat
      301 tgcatcggtg acgcaagtgc ctacctccac attctgggta agtacaccta ttgcagcgag
      361 cataatccac gcatcattga ctatagcatt tttccattga ggaacattag aatgatccat
      421 tgcccatatg gaatcgtaat ccattctatc agcaatttga caggctgtga taacctgact
      481 ttcatctagg cctaatctag ctacattaag gccctgagtg aaaccaaatt ttgtcctcat
      541 gacaaatttt ccatcctcct ttctgttaat gtgaaaaata taaagaacgc attgtgcata
      601 cttaaaaaca aagtgacggc tgtatattta aatatgtcct tgtataggtc agcgtccagt
      661 tcataaatct atctgatcat agactatgaa aacacgctat acgcaatgct tctcacgaac
      721 gtgagtcatt accacagaaa actttgtata tgattataat attgtattga aattcaatat
      781 atgatttgac attgtcatca gctacaaagc agcaaggtat ttgtcaatag cttgatttat
      841 gcgtgttgct tattgacatt aattgaaaag tatcagcctt tcaatctagg attttaaata
      901 taagtagttg aacatgatga catcctctct aattaaatat tttcagcgct cttattatgg
      961 tagagccttg cttaagagct cactgccttg tcatatttat agccgtattt aaaacattta
     1021 ctcccataag aagccctaga ctacctcttg aggcgcaatg ttctgtgaat ctagtactat
     1081 tatcattaag aacattattc cctgatatca ataaaggaac aggatcatca ctgtgaccct
     1141 ttcgttggca aggcgtggaa tgatcaccgg aaataactat tacggtatca tttacggtta
     1201 acctctttag aagagttcca aagaatcgtc tatcaatttc ctctatattg ttttttttgc
     1261 ctattgcatc accatcatgc ccaaattcat ctggaccttt aatgtgaacg tatagaatag
     1321 aatatttttc cataatcttg gctgcagcaa tagccttgtt ctcatagtca tccacttcac
     1381 ctgcattaaa tggagtcatt cccaaggctt tggagattcc gacttctaca ggcatatcta
     1441 caagacatgc gacttcggaa tcatattttt tggtaatcgg ctctactgtt gggtatctgt
     1501 ttccagagtc acgcaacaaa attacattca taggattttt tcccgtgtta atacgagcat
     1561 tgttcacagg atgacctttc aaccatttta tggtttgttc tgtgaattca ttcactaatc
     1621 tcgctgcgat tttagatcct tctgtgttgt cttccggttt tgatttttca atataaatat
     1681 tagtaggcgt tggttttgat acacccatac catcaacttt atcgtatgcc ggatctgtgt
     1741 ttgtaatctt gtctgaaagt ttgatgtggt tatgtctaaa tctaattgtg acgcgatgag
     1801 caactgtggg ttggataact accgaagcat ccttatcagc aaagctgatt ttttcttgta
     1861 atgttttgca gactgcctga gcttcctctt tgctaataat tctaccggcc cgcctatcaa
     1921 ttattttcaa atcactatcg acagttgcaa agttgcctct tagcgcaaga tccccctcat
     1981 gaaaatcaat attcgatccc atcagttcta tcactcctct tccaacatag gttccattgt
     2041 tgaaattgta tccaagcata ttaaatacag caatgtcaga ttgtggtgca atcccttttc
     2101 caacgctgat tactctaccc atgcatccgt tcctcgccag agcatccata ttaggagtac
     2161 aagcagcatc aagaggcgtt gagttattta ataatggatg tggcaaatca ccaattccgt
     2221 caagcaatac atagataagc ttaatgttca tttgaaggtc attatattat agagagattt
     2281 atctgttata ggaaccggta tatcgattct tgggcgcgtg ctcgtggata atttataata
     2341 taattattga aatttgtaag aggactaatt tgctttattg ccaaccagta attttgaatg
     2401 catctttaag gatggaaatc tttaattccc gtttaaggca tgtatgagac caaatcatgt
     2461 ccatagtggc attgcagatg gatattggag gaacggagtg gataattcta gcgctattgg
     2521 gattgttttt gttatttggt tccaaaaaat tacctacagt atcaagaact ttgggaaagg
     2581 ctgttttgga atatgaaaag gcacgggagt tagttagaaa aaacatagaa gatgcaacaa
     2641 gagtagcgga agaaccaaca aaatatctca tgggaccaaa aattactgca cctgtcagtt
     2701 ccgaacgcga aaaactagaa cacatagcta tctccctcgg cataaaccat ttaggtaaaa
     2761 ctgatgagga actgcgtagg ttgatttcaa atagaatgca aggataagat tttggaatca
     2821 aacatattac tcggtatcga ctactttcaa ggacctcgaa acctcttaag aataacctaa
     2881 taaaaatgga attgtaacaa taggacaacc ttatagtatg ccaatatttt aatgaacgaa
     2941 tggaaaagaa ttggcagata tcaggctaca cctttatctc aactttagga ttatcttcat
     3001 accagagaga aacaaggctt agtttctgca agataattga gtatattgta tacataagaa
     3061 agcaagcaag caagcattac tagcgtgata ttgcatttga tggcacaggt gacaaaggaa
     3121 caactctttc caacaatagc ctaggtcata cgtctcgtgt tgttagccag atattgatct
     3181 aaacacaatt aagttttttg aaagcgatag aatccataaa gacatatatg agattagaaa
     3241 acgtgttttt ggcaagggaa gttggattct aagaaacaaa aagaatacaa agatacggtc
     3301 tatataatca tctatcatta tgatggtgaa aaagactaat gaaggaaaaa tctaaagtca
     3361 aagaaatctc caatcgaaac aatcgcgaag gcttaagagg atggttaaat ccaactagat
     3421 atggttggga acgtgtatcg tattggctgc agcgactaac tggggtgtat ctgctaattt
     3481 actttatagg ccatgtaatc gaaaccagct ctattactgg aggagttgat gcatggaatg
     3541 aaacattaca gtttactcaa aacatctggg gacacattat tttgatacta ctaattggaa
     3601 caagcgcgtt ccatgctaca aatggcatca gattaatatt tacacagggg ggaaagggac
     3661 ttgggaatcc tggaagacca gactatcctt atgatgcaat atcacttaat tatcgtcaaa
     3721 agtcaggaat atggattgca ttgattctcg ctgcagtagc aatgttatat ggcagtaatg
     3781 tccttttttc tggaaaatag aaaagaattg ttgcttccgt tccagactta atgaatattt
     3841 cccatcacaa ctatagctgt tttcccatta acctttgtaa ttatcgtcat tgtaatatca
     3901 ttttacaggt aacacctata aaatcaagag cacacaaatt ataatgctat tgataatatt
     3961 ataatatgga ttttagaaga gtcaactgat ttgatacatt aacatggatg gaatgcaacg
     4021 atatttgtga ttataaggac gcagttatgt cataatatat ggaagtttac aacagaatct
     4081 gaaaactgta aaataacgct ataaagacat atccagaaga acaaaactat aacttgtata
     4141 tttttcaacc cgatactatc tatcgtctcc attgtcatat tgcaggaaat atcgcatata
     4201 cgttgcaaca acaactacca gtctaaatct agttaacttt ttgcgtatgc cttcgaacag
     4261 atattcaaat tgaatcggat ctgatcggta ataacaaaaa attaattatt tactgaactt
     4321 atactgttgt actgagaaaa atgactccca agcttttaca atattgctgt taaaatctgt
     4381 tacagcatca attgt
//
LOCUS       DASQSJ010000400         2002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_72001, whole genome shotgun sequence.
ACCESSION   DASQSJ010000400 DASQSJ010000000
VERSION     DASQSJ010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72001"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /gene="pdxT"
                     /locus_tag="VE223_07870"
     CDS             <1..288
                     /gene="pdxT"
                     /locus_tag="VE223_07870"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HZC21548.1"
                     /translation="IVVERNAFGRQSDSFETDLEISTLGKNTFRGIFIRSPIVREVGD
                     RVDKIAEFNNKIVAVKQQNIIGTAFHPELSGDDRLHRYFINMVLDFKKRQR"
     gene            complement(297..416)
                     /locus_tag="VE223_07875"
     tRNA            complement(join(297..341,356..416))
                     /locus_tag="VE223_07875"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(357..359),aa:Leu,seq:taa)
     gene            524..597
                     /locus_tag="VE223_07880"
     tRNA            524..597
                     /locus_tag="VE223_07880"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:558..560,aa:Thr,seq:ggt)
     gene            complement(904..1920)
                     /locus_tag="VE223_07885"
     CDS             complement(904..1920)
                     /locus_tag="VE223_07885"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HZC21549.1"
                     /translation="MRLIVVGFGVVGQSFAKLLLSRSADLYNIYGVKPRVVACIDSKS
                     ASISSTGLDLRKLLDVKKSKGTIGAYDKRSSELDSCHIIENVDAEVLLELTPTNLDHG
                     EPGSSHIISAMRSSKHVITVNKGPLALAFPSLLELADYNGVMLRFSGTVGGGTPILEF
                     AKRCLKGDRITSFKGILNGTTNYILSKMEEDLTFESALDDAREKGYAEAVPSLDIDGY
                     DAAAKLVIMANWIMSMKVTMKDVNRTGIRDIKLPDIQRAHKRGNAIKLIAMCDNKYLN
                     VKPTEVSKTDPLYVNGTLNAVTFSSEHSGQQTIIGRGAGGMETASAILRDLIEIKDTI
                     FERS"
BASE COUNT          599 a          417 c          368 g          618 t
ORIGIN      
        1 attgttgttg aacgaaatgc atttggaaga cagagcgatt cgtttgagac tgatcttgaa
       61 atatctactc ttggaaagaa tacattcagg ggcattttta ttagatctcc tatagtgaga
      121 gaagttggag atagggtaga taaaatagct gaatttaata ataaaattgt tgcagtaaaa
      181 caacagaata ttatcggtac tgctttccat cctgaattgt ctggagacga tagactccac
      241 agatatttca tcaacatggt actagatttc aagaaaagac agcgataata aaaaggtgcg
      301 gggggtggga ttcgaaccca cgaaccccta agggacggga tcacccattt gagatcttaa
      361 gtcccgcgtc tccaattttc ttatacgcct atttggccag gctctacgac ccccgcttag
      421 ccctacaagc cgacttaaca gagatactgt aattaaacct tacaagagac gcacagatac
      481 cttaatgaac ccctatattc atgttgaatg cttgaagaca tttgccttgg tagctcagcc
      541 tggtagagcg ttgccttggt aaggcaaagg tcgcgggtcc aagtcccgct caaggctctg
      601 cctcatttag ttaaaaggag tgagtatctc ttctttgcag attcaaatta ttctaaactc
      661 ttaccacatg tggtaagact cgatcttcta ggaatcaaga aaggagcaaa ataaaaatat
      721 agctaatatc aaacaagatg aactgtaatt tattgatgct acaaaaacaa gcaacttcaa
      781 tactgttcag aaagttatgg cggaatcctg gaatatttgc tacgaacatg ttatctaagt
      841 tcaactggat attgaggaat gtgctaatta ctatgtgcta atcccaattt tgcaatatcg
      901 ttattaacta cgctcaaaaa ttgtgtcttt tatttctatc aaatctctga gaattgcact
      961 agctgtctcc ataccacctg ctccgcgtcc aattatggtc tgctgtcctg aatgttcaga
     1021 tgaaaaagtt actgcattta atgtcccatt tacatataat ggatccgttt ttgacacctc
     1081 cgttggcttc acattaagat acttgttatc acacattgca atcagcttta tagcattacc
     1141 tcttttatga gctctttgta tatcgggtag cttaatgtcc ctaattccag tccgattaac
     1201 atctttcatg gtaactttca tactcattat ccagttagcc ataattacaa gtttggctgc
     1261 tgcatcatat ccgtcgatat caagggatgg cactgcttcc gcataccctt tttctcttgc
     1321 atcatcaaga gcactctcga aggtcaaatc ttcttccatt ttacttaaaa tgtaatttgt
     1381 ggttccattc agaattcctt taaatgatgt tattctatcg ccttttagac atcgctttgc
     1441 aaattctaaa attggtgtac ctccccccac agttccacta aaacgaagca tgacgccgtt
     1501 atagtcagct agctctagca gcgaaggaaa agctaaggct agaggtcctt tgtttactgt
     1561 gatgacatgt ttgcttgatc tcatagctga tattatgtga gaagagccag gctcgccatg
     1621 atccagattt gtaggtgtta actcaagaag cacctctgca tctacatttt cgattatatg
     1681 acatgaatca agctcagagc ttctcttatc ataggcgcca atagtgcctt tggatttctt
     1741 gacatcaagc aactttcgga gatcgagacc tgttgaagaa atactagcgc tcttgctatc
     1801 aatacaagca accacacgcg gcttgacacc atatatatta tataaatcgg cagaacgaga
     1861 taatagtaat tttgcgaagc tttgaccgac gaccccaaaa ccaactacaa ttaatcgcaa
     1921 ttcacgtatt ggatattaga gcggggttaa tatatttaaa ttaaataatt cctactgaat
     1981 tcgtttttca catgttctac tt
//
LOCUS       DASQSJ010000401         3564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_271130, whole genome shotgun sequence.
ACCESSION   DASQSJ010000401 DASQSJ010000000
VERSION     DASQSJ010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271130"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(215..478)
                     /locus_tag="VE223_07890"
     CDS             complement(215..478)
                     /locus_tag="VE223_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HZC21550.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENNLLEYLEGSQTYKTTEKGLNFLKMHNEIGELLQTSAKQEK"
     gene            689..2644
                     /gene="acs"
                     /locus_tag="VE223_07895"
     CDS             689..2644
                     /gene="acs"
                     /locus_tag="VE223_07895"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HZC21551.1"
                     /translation="MMSDSNFTKLSKAYDETQKVTLEGKKLDKIKTQAAENPEKFWAE
                     QAKNLVWFRQWNNILEWNYPFARWFVGGQLNACVNAVDRHINSNEKNKVAIMWEGENG
                     EHRSFTYYQLYHSVNKFANALKNLGVQKGDRVTIYLPMVPELPIAMLACSRIGAIHSV
                     VFSGFSAQALSDRICDSKSKVIVTADGGFRRGKVIELKSIVDDAISSTPFIENIIVLK
                     RAENDIQMGSKDLWWHDIIEGTKSYCEPEILDSTHPLYILYTSGTTGKPKGVLHSTGG
                     YLTHLYATAKWVFDFKNQDIFFCTADIGWVTGHSYVVYAPLMHGVTEIIYEGAPDHPK
                     PDRYWEIVEKYGVTILYTTPTALRMYMKYGNAIPNSFDLSSLRLLGTVGEPINPEVWM
                     WYFKTIGKENCPIVDTWWQTETGGIIASACTGVEAVPMKPGSATLPVPGIDAAIVDEN
                     GKSVAHGIKGYIIIRKPWPGMLMTLWENDKKYQNTYWEKFANVYYAGDYALSDDDGYL
                     WFLGRADDVLKVAGHRLGTVELESAFVSHKAVAEAAVTGKADQQKGESIIAFLVLRAG
                     FSASDLLREELVHHIRTSLGPIASPDEIYFVNKLPKTRSGKIMRRLLKSISTGSAIGD
                     VTSLEDGTSVQEIRQAYIDLHNVVDTG"
     gene            complement(2770..3261)
                     /locus_tag="VE223_07900"
     CDS             complement(2770..3261)
                     /locus_tag="VE223_07900"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HZC21552.1"
                     /translation="MVHKIALLIPMIVMAAIIGAMGLSLFPLKVKNKALEFAQGKVEI
                     NGDLINVEIAKSSAERQRWLMFRQEKIPLNSAMILVYDKPDLYSMWLLNIEYNLDLIW
                     VDESGQIVYVVKDAPPCKNTLDPSSCTYKNTKAAKYVIAATSGFINRHKITMESKMTV
                     ISI"
BASE COUNT         1148 a          634 c          669 g         1113 t
ORIGIN      
        1 gcacgagtct cccacagaag aaacagttgc tccaaaagcc tcaaccacaa atcatttgtc
       61 aacaggtgac aaatctgccc caacgacgga tagcggcagt gaaacagatt ccaactggtt
      121 aaatcaggta atttcaagtg aatgagtgaa attctatctc atcacttagt tctttctaac
      181 tgctaatttc tgtatattta aaaattggga atatctattt ctcttgcttc gcagaagtct
      241 gtaaaagctc gcctatctca ttatgcatct tcagaaagtt taaccccttc tcagttgtct
      301 tgtatgtctg agaaccctct aaatattcta agagattatt ttcaatgagc acggaaagat
      361 attctcttaa ctgggcatag ctcagaaaag ctttatacat tatttttgtc ttggtggctc
      421 cgccattcgc agcctccaag atcattgcta ctatttctgt tctacttctg tatttcacat
      481 tttaagtaca ctggatttct ttattttaat atattgacac attttataag ataaatgtta
      541 tataacaatc atctaaaaaa gtgctttacc gacgtgctgt tggcgtattt agtaccaatt
      601 cccaactata atagctacta actaactatg tagatatatt gttatactta aatccaaaat
      661 gcttttaaaa ttattctctc ttttttagat gatgtctgat tcaaatttta ccaaattatc
      721 aaaggcctat gatgaaactc aaaaagtaac attagaagga aaaaaacttg acaaaataaa
      781 aacacaagca gcggaaaatc ctgagaaatt ttgggcagag caagcaaaga atcttgtctg
      841 gttcagacaa tggaataata tacttgagtg gaattatcct tttgcaagat ggtttgttgg
      901 cggtcaattg aatgcatgtg tgaatgcagt tgatagacat atcaactcta atgaaaaaaa
      961 taaagtagcc ataatgtggg aaggcgaaaa tggtgaacat cggtcgttta cttattatca
     1021 gctatatcat tctgttaaca aatttgcaaa tgcgctaaaa aaccttggag tccaaaaagg
     1081 tgatcgtgtc acgatctatc ttcctatggt tcctgagctt ccgatagcaa tgttggcgtg
     1141 ttcaagaata ggtgcaatac atagcgttgt tttctctggt ttcagtgccc aggcattatc
     1201 tgatagaata tgtgattcaa aatctaaagt catcgtaact gctgatggtg gatttagaag
     1261 agggaaggta atcgaattaa aaagcatcgt agatgatgca atttcctcta ctccattcat
     1321 tgaaaatatc attgttttaa aaagggctga aaacgacatt cagatgggat cgaaagactt
     1381 atggtggcat gatataattg aaggtacaaa atcctactgc gaaccggaaa ttttggacag
     1441 tacccaccct ctatatattc tttatacttc tggtaccaca ggcaaaccaa agggagtttt
     1501 gcatagcact ggcggctatc ttacccatct atatgcaaca gccaaatggg tttttgattt
     1561 taaaaatcaa gacatattct tttgcactgc tgatattggc tgggtcacag gtcatagtta
     1621 tgttgtgtat gctccactaa tgcatggtgt tactgaaata atctatgaag gagcccctga
     1681 tcatccaaaa cctgataggt actgggaaat cgttgagaaa tatggcgtca caattctata
     1741 cactactccc acagctttac gaatgtacat gaaatatgga aatgctatcc ctaattcatt
     1801 tgatctgtcg tctttacgcc tactaggaac agttggtgaa ccaatcaatc ctgaagtatg
     1861 gatgtggtat ttcaaaacaa taggaaagga aaattgtcct attgtagata cgtggtggca
     1921 aactgaaact ggcggtatta ttgcgagtgc atgcactgga gttgaagctg tcccaatgaa
     1981 gcctggttct gcgaccctcc cagtaccagg aatagatgct gcaattgtgg atgaaaatgg
     2041 aaaatcggta gcccatggca taaaaggata tataataatt agaaaaccgt ggcctggaat
     2101 gttgatgaca ctatgggaga atgacaaaaa atatcagaac acttactggg aaaaattcgc
     2161 aaatgtgtat tatgctggtg actatgcact atctgatgac gacggctact tgtggtttct
     2221 tggtagagca gatgatgtgc ttaaggtggc aggacaccgg cttggtacag tagaactaga
     2281 aagtgcattt gtatcacata aagctgttgc agaggctgca gtaactggta aggctgacca
     2341 gcaaaaagga gagtcaatca tcgcattttt ggtgcttcga gcagggttct ctgcatcaga
     2401 tctacttcgt gaagaacttg ttcatcatat cagaacatca ttgggaccaa tagcatcacc
     2461 tgacgagatt tattttgtaa acaaacttcc taagaccaga agcggaaaaa taatgcgaag
     2521 attgctgaaa tccatatcaa ctggatctgc aattggcgat gtaacatcac ttgaagatgg
     2581 tacatcggta caagaaataa ggcaagcata catcgatttg cataacgtcg ttgacactgg
     2641 atagtgttcg atcctgacgc gaattcattt tatatcggtt tcgttgaacc ttttaacata
     2701 tcaattcttt tggaactgtt atatttgata gatgtatttg taaaacattt catggcatca
     2761 aattaaggtt caaatcgaaa ttactgtcat ctttgattcc atggttatct tatgtctatt
     2821 tatgaatcct gacgtggcag caataacata tttagcagcc tttgtattct tataagtaca
     2881 gctggatgga tctagtgtat ttttacaagg tggcgcatct tttactacgt acactatctg
     2941 accgctttca tcaacccaga tcaaatcaag gttatattct atatttaaaa gccacataga
     3001 atatagatcc ggtttatcat aaactaggat cattgcagaa ttcaaaggaa ttttttcctg
     3061 tctgaacatt aaccatctct gtctttctgc actagatttt gcgatttcta cattaattaa
     3121 atcgccattt atctctactt taccttgtgc aaattctaag gctttatttt tgacttttaa
     3181 tggaaaaagg ctcagaccca tagcccctat aatcgctgcc atgacaatca ttggtattag
     3241 aagggctatt ttatgaacca tattgaatca taaaataaag ctaatagatt gaatttgaac
     3301 cttaccggtt aataccagca tattttattt ttgatggtaa ccattaaatc attattattt
     3361 tatgatcctt tctccaaatt aattttatac aaatcattaa aattaatagt gaatatagtt
     3421 gtaagcaaaa ctgcggtgca attgattgct aataacgtag tgcttaatga atggaatatt
     3481 taaacctagg aaagaatgta actattattg cttggccata taaaaacagt agcattagat
     3541 tagaacaagc cgaagaacaa aagg
//
LOCUS       DASQSJ010000402         2864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_271181, whole genome shotgun sequence.
ACCESSION   DASQSJ010000402 DASQSJ010000000
VERSION     DASQSJ010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271181"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VE223_07905"
     CDS             complement(<1..737)
                     /locus_tag="VE223_07905"
                     /inference="COORDINATES: protein motif:HMM:NF037100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HZC21553.1"
                     /translation="MSSISKEQRKNIDLAVIKIAKKHIVSGVCLYGSKVAGYARPNSD
                     FDIIIVLEDYTYVLKYVYLKESEIELSALVVDRKCLERDANSAFLGEFVIGRLLHVYE
                     SLVNPELFRKLETVYKKRVILEEISDIVRSTNILCTELTFPLEYIMFSKIRRRSILYP
                     NALYSYSKIYTGQNSKNNIEFALDGYRQALKDILEEDDQLLILRSNGSLMQISEKRVD
                     VQRSMKVASLKLTKRMQEFASYFIHAYA"
     gene            complement(730..1440)
                     /locus_tag="VE223_07910"
     CDS             complement(730..1440)
                     /locus_tag="VE223_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21554.1"
                     /translation="MPNALLRLEEAKNKGLIPDHMYRLITSRFHLVKEGISRIEKASG
                     LNYPYYYVEPNLVISTSKVEFTQLGIFFARTIPVIGRENRLNILVQLTAPLIAYGLLG
                     TIHAILAHEFMHYVSLISRVLKMNIISDEIPDSLFEEKYRDFDHLLEARIIFKRDNAL
                     INHIEKKFSEGFGDRRLERKTIEDWMNKGLPTIVLPVDANIIRIPIETIAKLRIDDII
                     REKINQFENKARSKKSYV"
     gene            complement(1477..2454)
                     /locus_tag="VE223_07915"
     CDS             complement(1477..2454)
                     /locus_tag="VE223_07915"
                     /inference="COORDINATES: protein motif:HMM:NF044739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21555.1"
                     /translation="MSIIDLIVEKMVVDVERKYEFSSFLIGLTIPTQIYEREDQVRAR
                     FKIRGRESIKKELVNEIGSRFKRTTKKRLEHHLPDIRINIIIDNSNDFCITARASPLI
                     LSGRYIKRSRGLPQKKVRCIQCSEKEGNICSHFGLSADKTIEDIITTRLLLITSGEKP
                     KFLWLGSEDPDSLVLGKGRPFFMHISNPKVRSLRTNLKFRTNGVLTTINGMLEHLPKM
                     PIQFITKTKILVHSSVNISKFDLRKLKALKNSVVKFEIKSRIVKKRIYSVRTRQINEK
                     EFSLTLMADGGFVIKQFVGAQRYVEPSVSKIIGATCECTLFDILDVIIQ"
     gene            complement(2613..>2864)
                     /locus_tag="VE223_07920"
     CDS             complement(2613..>2864)
                     /locus_tag="VE223_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020150.1"
                     /note="with 7S RNA and Srp19 binds to the signal sequence
                     of presecretory protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein Srp19"
                     /protein_id="HZC21556.1"
                     /translation="EDDLDVLQAKMEKWRFIIQSMTREEKKDPHLINDSRRKRIARGA
                     GMTEHEIKDLIKQYDNSKAMMKQTKGRQMQGMLRRFGFG"
BASE COUNT          822 a          580 c          461 g         1001 t
ORIGIN      
        1 gcataagcat gaataaaata agaagcaaat tcttgcatcc tttttgttag ttttaaagaa
       61 gcaaccttca tggatctctg aacatcaacc cgtttttcag agatctgcat taagcttcca
      121 ttagatctca ggatcaataa ttgatcgtct tcttccaata tatcctttag agcttgtcga
      181 taaccatcga gcgcaaattc aatattgttc tttgagtttt gtcctgtgta aatctttgag
      241 tagctataaa gagcattggg atacaatata ctcctgcgtc taattttcga gaacattata
      301 tactctaaag gaaaagtcaa ttcagtgcat aggatatttg ttgacctgac aatgtcagaa
      361 atctcctcca agataaccct ttttttataa accgtttcaa gctttctaaa taattctgga
      421 tttacaagtg attcgtaaac atgcaacaat cgaccaatta caaattcacc aagaaatgca
      481 gaattggcat ctctttccag acatttacga tcgacaacaa gtgcagaaag ttctatttca
      541 gactccttta gataaacgta cttaagaaca tatgtgtagt cttccagtac tatgataatg
      601 tcaaagtcac tgttagggcg tgcataacct gctacctttg aaccatacaa acacactcct
      661 gaaacaatgt gtttttttgc tattttgata acggctagat ctatattctt tcgctgttcc
      721 ttggaaatac tagacataag actttttgct tcttgcttta ttttcgaatt ggttgatctt
      781 ttccctgata atgtcgtcta tacgtaattt tgctattgtt tcaattggga ttcttataat
      841 attagcatca acaggtagaa caatagtcgg aagaccttta ttcatccaat cttctatagt
      901 ctttcgttct agtctacgat ctccaaaacc ttcagaaaat tttttttcta tgtgattgat
      961 caaggcattg tcacgtttga atatgatcct ggcttctaac agatgatcaa aatctctata
     1021 tttttcttcg aataatgagt ctggtatctc atcagatatt atattcattt taagaacccg
     1081 acttatcaag ctgacataat gcatgaattc atgtgctaaa atggcatgga tggttcctaa
     1141 tagtccataa gctataagag gagcagttag ttggactaga atattaagac gattctcccg
     1201 tcctatgact ggaatggttc tggcgaagaa aatcccaagt tgggtgaact ccactttcga
     1261 agttgatatt acaagatttg gttcaacgta ataataagga taattcaaac cggaggcttt
     1321 ttcgattcga ctgatgcctt ctttaacgag gtgaaaacgg cttgttatca atcgatacat
     1381 gtgatcagga attagtccct tgtttttggc ttcttccagt cttagcagag cattaggcat
     1441 ctagctaatt ttacaaagtt atggtctaaa aaagtgttac tgtataatca catctaaaat
     1501 atcaaataaa gtacactcac aagtggcacc tatgatcttg gatacactcg gttcaacgta
     1561 cctttgtgcc ccaacaaact gtttaataac aaatccaccg tcagccatca aagtaaggct
     1621 aaattctttc tcatttattt gccgtgtcct aactgaatag attcttttct taactattcg
     1681 agattttatc tcaaatttaa ctaccgaatt cttcaaggct ttcaattttc tcagatcaaa
     1741 ttttgatatg ttaacgctgg aatgtaccaa gatctttgtt tttgtgataa actgaatagg
     1801 cattttcggc aaatgctcta gcattccatt gatcgttgta agtacaccat tagtacggaa
     1861 ttttaggttt gtccttaatg atctaacctt tgggtttgat atgtgcataa aaaaaggacg
     1921 accctttccc agaacaaggc tatctggatc ttcacttccc aaccacaaga attttggttt
     1981 ttcgccacta gtaatcaata gcagcctcgt agttattatg tcctcgatag tcttatcggc
     2041 acttagtcca aaatgactgc atatattgcc ttctttctca gaacactgaa tacacctaac
     2101 ctttttctgt ggcagccctc tagacctctt tatatagcgc ccggatagaa tcaagggaga
     2161 cgcccttgca gtaatacaaa aatcgttgct gttgtcaatg ataatattta ttctaatatc
     2221 tgggagatgg tgctcaagcc tttttttcgt ggttctctta aatctagatc cgatctcatt
     2281 tacaagttct ttctttatac tctctcttcc acgtatctta aatcgagctc ggacttgatc
     2341 ttcacgttcg tagatctgag taggaatggt tagtcctatt agaaaggaac taaattcgta
     2401 tttcctttcc acatccacga ccattttctc tactattaaa tcaatgatac tcataagccc
     2461 gctgcagatg tagcactcat ctaagcctcc agcttgtttg atcgtattta ttgttacaat
     2521 tcttttagtt tttgatagtt gtctagaaag acaataacta cacagtctgt aatatgtgct
     2581 tagtctttgt gatagcaaat ctttttttta tattaaccga aaccaaacct tctcaacatc
     2641 ccctgcattt gtctgccctt agtctgcttc atcatagctt tggaattgtc atattgtttt
     2701 atcagatctt taatctcatg ctcagtcatt cctgcacctc ttgctattct cttgcgtcta
     2761 gagtcattaa tgagatgtgg atcctttttc tcttcccttg tcatagattg aatgataaat
     2821 ctccatttct ccatctttgc ctgaaggacg tcaaggtcat cctc
//
LOCUS       DASQSJ010000403         3702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_306486, whole genome shotgun sequence.
ACCESSION   DASQSJ010000403 DASQSJ010000000
VERSION     DASQSJ010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306486"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            324..806
                     /locus_tag="VE223_07925"
     CDS             324..806
                     /locus_tag="VE223_07925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21557.1"
                     /translation="MYTKRATMALTIIAITMAIALVTAGSLNASVLAARSSKSSRGGG
                     GSVGTLGGPTLGGTATSSRSSAGASPRALMSDFVKCLRSAGTSSSSLGATSGASSGGA
                     GMLTRADVTNCYDSVYRGAIGGGAGGSLGSTGGAGGGTSPSGSLGSTGGAGGGTSPSG
                     "
     gene            1026..1490
                     /locus_tag="VE223_07930"
     CDS             1026..1490
                     /locus_tag="VE223_07930"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HZC21558.1"
                     /translation="MVNYYTILGLGKDASQSEIIKSYRYLELKYHPDRNNNSEEARQK
                     FMQIVEAYQVLSNEQSRRDYDITTRYGSALHSWRNWQVPSYGDFGRVHIYTNKSYRPK
                     TSSNSTNRDIKSNNSMGYFSKNATTRIRKARMVIFSSLASAVRSVTLPDTEK"
     gene            2007..2237
                     /locus_tag="VE223_07935"
     CDS             2007..2237
                     /locus_tag="VE223_07935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21559.1"
                     /translation="MKKPPYKFLRRNFPFILLFVAFWFFTAGVYPFPYFIAIGKSLDP
                     AIMQPILIATGLMAIPFTFLLIAWKKRPPTSR"
     gene            complement(2586..3179)
                     /gene="dps"
                     /locus_tag="VE223_07940"
     CDS             complement(2586..3179)
                     /gene="dps"
                     /locus_tag="VE223_07940"
                     /EC_number="1.16.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA protection during starvation protein"
                     /protein_id="HZC21560.1"
                     /translation="MSETKKGAVPKIVALEVLEKNGVNIERLKDLITKGVGAEFTTYY
                     YYTILRMHCTGLEGEGIKEIVEDARIEDRNHFEAMVPRLYELGGNLPRDIRKFADQAG
                     CPDAYLPDNWEDINSILKVLLEAEQCAIRSWGEVCDMTAGKDPRTYDIAQKIMQEEVE
                     HEAWFIELLSKRPSGHFRRKFVGQSPHTGEQGSLIHL"
BASE COUNT         1194 a          712 c          681 g         1115 t
ORIGIN      
        1 gttacaagtt tgactacact gccaaacaat tagccatttt ctggcatcac caatttcgag
       61 attggactca ttcggtacat tcattttact caatttaaag acctaattta aagactagtc
      121 ttgtactgag acaaaaactt aattattaag aacttgaatt tttaacttgg aattgcaaaa
      181 tggccagaca ttccggatgc ttcctccact gttggagttc attaaattaa tgggatttaa
      241 taaatttaaa tttcctacgt catttggtct aatagtacat actatcatcc ttttataata
      301 gacactagtc cctatcagaa cgaatgtata caaaaagagc gacaatggca ttgactatca
      361 tagcaattac aatggcaata gcacttgtaa cagcaggtag cctcaatgct tcagttttag
      421 ccgcgcgcag cagcaaaagc agcaggggag gaggaggctc agttggaact ctagggggcc
      481 ctactctcgg aggaacggct acgagtagcc gtagttcagc tggtgcttca ccaagagccc
      541 tgatgagcga cttcgttaaa tgtcttaggt cagctggaac cagtagtagc tcattaggtg
      601 ccacttctgg cgccagcagt ggaggagctg gaatgcttac cagagcagat gtaaccaatt
      661 gttatgactc agtctataga ggcgccatcg gtggcggcgc aggcggctcc ctcggcagca
      721 caggcggcgc aggcggcgga acctctccta gcggctccct cggcagcaca ggcggcgcag
      781 gcggcggaac ctctcctagc ggctaaaatc attcctttta tttttttaaa ctggcctctg
      841 attagatata ataataatac tgctagcatc gagaatcctt aacttatctt caagaagatc
      901 atatatatta cacaaaatct cgaatatatg accaaaatgg tttgctttgc tttccttata
      961 tattaaaccg gtgcagggta aaaaattttt atactctctt ggtaccatat gatatacata
     1021 caaacttggt aaactattac acaatcttag gtctcggtaa ggatgcttcc cagtcagaaa
     1081 taatcaagtc ttaccgatat ctagaattaa aataccatcc tgacagaaat aataattctg
     1141 aagaagcaag gcaaaaattt atgcagatag ttgaagctta ccaggttctc tctaatgaac
     1201 aatcaagaag agactacgat ataacaactc gttatgggtc tgcattacac agctggcgca
     1261 attggcaggt gccaagttat ggggatttcg gcagagttca catctataca aataaaagtt
     1321 atcgaccaaa aacgtctagc aactctacga accgcgacat taaaagcaat aattctatgg
     1381 gatatttcag taagaatgca actaccagga ttagaaaggc gcgcatggtt atatttagct
     1441 cacttgcatc tgctgtccgt tctgttactc ttccagacac tgaaaaatga gcattttcaa
     1501 cgaaatcgtt tcaatatgat tgattatcgt tctgaggaaa caacagaaac agctcagagc
     1561 tagaatttga acatcattgc tatttctgta ttgtgacagt atatgtttac agatcgaact
     1621 tgcagataaa ggttaagatt gtattagcgt ggctgatgtg acattaaaac cttgatagtt
     1681 taaatccgac cgaacaaaaa cttaatgctt aatgagcagt gagaagaatg catagggact
     1741 aaaatcgcta taagacttta gcatcaaaat catacttgat cataccattg ctagatagag
     1801 atctcatcca tcatttgtca atgtaccgaa tgttgtaaca aaagcatatt aatgattggc
     1861 aagatataga tgtcatactt ataatgacaa aagactgtca gatatgtgga tcaaggtttg
     1921 gagatcttat ttgcacttat tgcacaaaat caatatgttc atcatgtctg gttcaggaca
     1981 agaatagatg tattaaatgc gataggatga aaaagccgcc gtacaaattc cttaggcgta
     2041 actttccctt catattattg tttgttgctt tttggttttt tacagcaggc gtatatccat
     2101 tcccatactt tattgctata ggcaaatcat tggatccggc aattatgcaa ccaattctaa
     2161 ttgcaactgg attaatggcc atccctttca ccttcttgct tattgcttgg aagaaaagac
     2221 ctcctaccag cagatgatac agtatatgat gatgacttga taccgctgaa tcctatgtga
     2281 tcatgtggct cattagtatg tatatacaac catgaccata aattacaata aagttagatg
     2341 ttgttataat aatgggaatt ttcactcata atcactaata tctctcgaaa aataaagaat
     2401 gaacccttca tgaaattaag cacaatgata aaattgggtt ttggtattgg tatccaaatt
     2461 tattgcaggc tacaaggcat gagcctggtg cgggctacat tatggcttgt atcatataat
     2521 attaccaatt tcgccagatt aggggattct taaagaaaag aaaaagaact agggattatc
     2581 tttggtcaaa ggtgtattaa actgccttgt tccccagtat gtggcgattg gccaacaaac
     2641 tttcttctaa agtgacctga gggtctcttt gagagaagct ctataaacca ggcttcgtgc
     2701 tcaacctctt cttgcataat cttttgagca atatcataag tccttggatc cttaccagct
     2761 gtcatgtcac aaacctctcc ccatgatcta attgcacatt gttctgcttc taataaaacc
     2821 ttcaatattg aattgatatc ttcccaattg tctggcaaat atgcatcagg acatccagct
     2881 tggtctgcaa atttccttat gtcccttggt aaattacccc ccaattcata taatctagga
     2941 accattgctt caaaatgatt tctatcttca atacgtgcgt cctccactat ctcctttatt
     3001 ccttcacctt caagtccagt acagtgcata cgtaggattg tataataata atatgtggtg
     3061 aattctgcac caactccttt tgtaattaaa tcttttagcc tttctatatt aactccgttc
     3121 ttttctagaa cttctaacgc gacaattttt ggtacagctc ccttttttgt ctcagacatt
     3181 atcatattga tcaataacga ttattattaa agtcttgctt tttagccaga gttcacatta
     3241 taagttgaaa aagtgcatat gagggtaagg aagttatcgc tcgaaagaga cgtaaatatg
     3301 atggttctcg tgcataaaaa actcacttta tatattaaaa gcaacaaaat ataggatgtt
     3361 tcatacctct acttttaaat attttgtgtc aaaattagca aaatggtcta actcgcaaat
     3421 ttaaatctgg tagcttgagg aagaagaaga acgtatttga tatgaggata aggcataggc
     3481 aaactagcag attataatgt cctgttaaaa atatacaata ttccttcaag aacaagcttc
     3541 tttactgcaa ggatatctaa aggagcgcct aacaatctga caaatcattt gttgaaaaaa
     3601 aggaaaatca ttaacaaaaa tataacagta ttgaagaaag agtataacga atactaatga
     3661 gataatcagc agcaacaata ttgatattga tgacgaagta ga
//
LOCUS       DASQSJ010000404         2994 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_590867, whole genome shotgun sequence.
ACCESSION   DASQSJ010000404 DASQSJ010000000
VERSION     DASQSJ010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590867"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(361..867)
                     /locus_tag="VE223_07945"
     CDS             complement(361..867)
                     /locus_tag="VE223_07945"
                     /inference="COORDINATES: protein motif:HMM:NF016124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21561.1"
                     /translation="MELYDAMKLIKKFGNAAGKVCEVLIPIKHEHYIGEGNSIAICTL
                     SSIDLLQTIANTVEIIDRILVVGRLLSENKGLDKLIDFTLKHPDLRHLIVCGKEVRGH
                     ITGQALLCAHRNGVSDDGRIIGATGANPFLTCSQADIELFRRQITIYDLIENKDPKTI
                     KNIVLRLC"
     gene            1597..2394
                     /locus_tag="VE223_07950"
     CDS             1597..2394
                     /locus_tag="VE223_07950"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HZC21562.1"
                     /translation="MAARSLWKGSISFGLVNIPVKLYASTDTSKDFSFNQLDNKGHRI
                     QQKKWCPIEDREIPYSDIKRGYRISKDNYVVVEKEDLDKIKMKTTQSIDIKEFIESKD
                     FDPLLIEKSYYVAPEKKKRSDTIDKAYLLFAKVINDLNKIAIGKVVLRDREHLVALRA
                     YQRVIVMHQLRYIDEVKPVNEIEDMSEAASNSSSSTQTPIDNKELTLGKTLVENLTSK
                     QFDISQYSDEYTKQLEQLINAKSSGKKTLRLQLLKMRKTLVRTYLKH"
BASE COUNT         1032 a          524 c          517 g          921 t
ORIGIN      
        1 tattgactaa atacagatac ctgatacctg atgcatatac tactcgctta atattcgatc
       61 gttctagttc agggataccg agcaaattga acttggaatt acaggattga tagactgcac
      121 tagtgtaata tatacaagta aatacttgtc cttgaaattg tgtccgatag gctcatttca
      181 cgattagagt agaatcaata cactctgctg accagtattc aatcactaca ttacatttct
      241 tgctttcagc agctctagct atactattga acttgaactt gactttccta atcctatcaa
      301 actacatgta gacgtacata ttggtttagt actggatctc ctgctttgaa gtttttgcta
      361 ctaacataaa cgcaatacta tgtttttaat tgttttggga tctttatttt ctattagatc
      421 ataaatcgtt atctgtcttc tgaagagttc aatatctgct tgtgaacaag ttaagaaagg
      481 attggcgcca gtggctccta ttatcctacc atcatcactt actccatttc tatgagcaca
      541 tagtaatgct tgtcctgtta tatgtcctct tacctccttg ccgcatacaa ttaagtggcg
      601 cagatctgga tgctttaacg taaagtcgat caatttatct aatcccttat tttccgagag
      661 caatcttccg acgactaaaa ttcgatcaat tatttccact gtattggcaa tagtctgaag
      721 caaatctata cttgataacg tgcagatagc aatgctattt ccttctccta tataatgttc
      781 atgctttata ggaatcagaa cttcacatac cttaccagcc gcatttccaa acttctttat
      841 tagtttcatt gcatcataca gttccataat agctgtccaa atatataacc aaataatacc
      901 cgattgatgc aagagaatat gttctttcgt cgttcaatca cattcgacat agcatgttgt
      961 agtttgttgc aacaaatctt tgatatacaa aatcatgctg tcttttttca tactaggctt
     1021 aaaagacagt gaccaatctt ggattaacta aattagatgg aacaatccgt gaataccggc
     1081 atgtcgggtc cctaaaggat gcgaatggcc ttagtaactg atcgttgccg acagcaatct
     1141 ttaaaatgaa aatactcttt ttgtaaactt ttatatgtta ttattcagat agtccaacct
     1201 acacataatc ttcctagtgt ttgatgtaaa atcatcttcg ataactgcga cagtcgagaa
     1261 ctcgaaaacc atagaagaaa ggcatgtatt tagaagagtg cttcagatgg cgtcttccag
     1321 aaagcaagta gaatcacatg tggacgattt cgaatatctt taaaaagttt gctatagaaa
     1381 ttcatactga ggccctggag aaacttgttg gactgtcgca aaagtaaagc agttaataga
     1441 tgattatata agatcactaa atgtctaagg aatgtccttt gtaaagactt cataaacttt
     1501 catttggatt gctactaaaa cattctaata gataaagtca tttgtaaatt tcttttaagc
     1561 tgttaaaaca atagaagaag gacaacagaa tgaagaatgg ctgccagaag tctttggaaa
     1621 ggaagcatat cgtttggact tgttaacatt ccggtgaaac tttatgctag tacagataca
     1681 agcaaagatt tttctttcaa tcagttagat aataaaggac acagaattca acagaaaaaa
     1741 tggtgtccta tagaagacag agaaattcca tattcagata tcaagagagg ctacaggata
     1801 tcaaaggata actatgtagt agttgagaaa gaagatttag ataagattaa aatgaaaaca
     1861 acccaaagta ttgatattaa agagttcata gaatcaaaag attttgatcc tctgctaata
     1921 gagaaaagct actatgttgc accagaaaag aaaaagagga gtgatactat tgacaaagct
     1981 tatttgctat ttgcaaaagt aataaatgat ttaaataaaa tagcaatagg gaaggttgtt
     2041 ttaagagata gagaacatct tgtcgcgttg cgtgcatatc aaagggttat agtgatgcat
     2101 caattgcgtt acatagatga ggtaaaacca gtaaatgaaa tcgaagatat gtcagaagca
     2161 gcttctaatt cttcatcttc tacacaaacg ccaattgata ataaagaact aactttagga
     2221 aaaacattag tagaaaacct tacaagcaaa cagtttgaca tcagtcaata ttctgatgag
     2281 tatacaaaac aattagaaca actaataaat gctaaatcga gtggaaagaa aacgcttcgg
     2341 ttacaacttc tgaaaatgag aaagacgctg gtaagaacct acttgaagca ttaaaagcca
     2401 gtgtccagca aaaaagcaag tcaaaacgtt aatcgattat aatatccaat agctactttt
     2461 tatatagact gcaataaatt ctcatattca agcttaggat acaaacagca ggtagtggtc
     2521 gctgtctagc tgtcgtagca tgcacccatt atgtaggctg gaatgacaca gttagtggaa
     2581 gagaacattc tgcgcctgag aatcggaata atccaaatgc gtggaggcct gctgccctaa
     2641 ttacaaaaac atctcccaac catgcgcttt tgaaactctc atagacatcg cgataatgag
     2701 ttttaaacgt taattagaat atcaaattga acgtaattta tagaagcgag atcacattga
     2761 acagaaaact cagaacaggt cttttgtcgt catttgattt ttatgaagaa cgtgtctgaa
     2821 ataaaaagga tgcaaatcct accatgggtt ttgattattc tttatccatc ttgcagcagc
     2881 tatgtattga aaagcatcaa tttcaatctg caattcataa acaagtgata ctaatccttt
     2941 ctatatgtca cgttgttcga cgcaggattg ttttctttta acttaattac tatt
//
LOCUS       DASQSJ010000405         2489 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_391549, whole genome shotgun sequence.
ACCESSION   DASQSJ010000405 DASQSJ010000000
VERSION     DASQSJ010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391549"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..1409
                     /locus_tag="VE223_07955"
                     /pseudo
     CDS             165..1409
                     /locus_tag="VE223_07955"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase domain-containing protein"
     gene            1435..1986
                     /locus_tag="VE223_07960"
     CDS             1435..1986
                     /locus_tag="VE223_07960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21563.1"
                     /translation="MLPNKKDNTFNVDKTFDYSTIKSMVIKSLEKIVRQEFYLHIGCV
                     NLHKIIDIQEDEDKEDIIITHSSNNLLDDQVDDTKLSASLLKLKIRNTTAYLNWRIAI
                     LKRDNFKCRMCGASVKDNKGLRLEVHHAKSFNDICKENNITTIKQALACKQIWSLDNG
                     ISLCYGCHKNLEKLRGKIRKIFV"
     gene            2011..2181
                     /locus_tag="VE223_07965"
     CDS             2011..2181
                     /locus_tag="VE223_07965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21564.1"
                     /translation="MAAAACLASFAIFTGVLASLYGLDWYKNRKQNRRLTRKVDEEED
                     HIAKEPLTEQLA"
BASE COUNT          940 a          383 c          489 g          677 t
ORIGIN      
        1 cctttcagga gttattgtaa gcatagtcat tagcgctttt atcctgtact atctatacag
       61 acctcatgtt aaggcgtatt ttcgacgggc agactcgaat tgaatagggc tcgaaaatag
      121 aatacaggac catagagcaa atcgtttcaa gggacaaagg aggtatgata atatctccac
      181 aaataggatt gcacgaaaac gttgtggcac tagattatga tagcgaatat gcaaatctaa
      241 ttgtaaatca taacctgagc tatgaaactg tcactttgga agaaggagga aagggaattg
      301 tggtacaaaa acaagagcaa cagcccaaca aaaagaaagg attacttcca accatagtag
      361 agagatttct caaaagacga ctacatttca agaggatgct aaaagaactt ccaaaagaaa
      421 gcatggaata tgtatggtgt gagcagagag ttaactcact aaagaatata cttgtctgcc
      481 tctatggctc aactggttct ctatggaata ggtatgggaa cgtgcttgcc tttgaggaaa
      541 taaacaaact atccagggat atgctgataa gaacaaagga tatagtccaa agtttgtgat
      601 atgagctagt atatgctgat actgattctg tatttattga aaagaatgat tgtactgcaa
      661 aagatcatca gcaacttata gatacacttt ccaaggaaac tggtcttcca atctcgattg
      721 actaccatta caagttttta gttctgttac ctttagaagc tgatgaaaag atagaggtcc
      781 tcaaacatta ttttggaatt acatatgaag atgagttagt tgttagaggt atagagacaa
      841 gaagacacga tatccctaat tttataaagc aatttcaaac acagctacta tacatactat
      901 ttgactgcaa ggattcatct gaggtaataa gcaggggata cgaagatgct gttttgcttg
      961 tcactcaagc aatagataaa attatgactg gtgaaggtct tgcagctgaa gaccttgtta
     1021 tttcaaaatt actcaggcaa gatatatcaa aatacaagag tctattccct catgtctctg
     1081 ctgctattca actaagcaat gacacaggta agcatccaat gaaaggtgac accattcagt
     1141 atatctatac caattcacag cataacaatc ctctgtgcag agtagtacca atagctatag
     1201 gtaatgcaca agcagaatct ctgtcccagt atgacaggga aaaatacaaa gagatgatac
     1261 ttgatgctgc agaaacggct ctaggatttt tgggctttga taggactgtt tatagtaata
     1321 atatcaaaaa gaagaaagga cgaagaaaat ggtatgagga attaagagaa gaaagaataa
     1381 aggatataca aactgagatg tcagaataac aataagggaa aagaacaatt tagaatgctc
     1441 cccaataaaa aagataatac atttaatgta gacaaaacgt tcgattattc tactattaaa
     1501 tcaatggtaa taaaatccct tgaaaagatt gtaaggcaag agttctatct acatatagga
     1561 tgtgttaatc tacataaaat aatagacata caggaagatg aagataaaga agatattatt
     1621 attacccata gcagtaataa tctattagat gatcaggttg acgacactaa actatcagca
     1681 tcactattaa aactgaaaat aagaaatacg acagcatacc tgaactggcg tattgcaatc
     1741 ttaaagcgag ataatttcaa atgccgaatg tgtggtgcaa gtgtcaaaga caataaaggt
     1801 ctaagactag aggtacatca tgctaaatca ttcaatgata tatgtaagga aaataatatt
     1861 acaactataa aacaagcctt agcatgtaag cagatatgga gtttggataa tggaatatcc
     1921 ttgtgttatg gctgtcataa gaatttagaa aagctaagag gaaaaataag gaagattttt
     1981 gtataacata tccaacagta ataatagatt atggctgcag cagcatgttt ggctagcttt
     2041 gctatcttta caggagtact ggcgtcctta tatgggttag attggtataa aaatagaaag
     2101 cagaatagaa gattaactag aaaggtagat gaggaagaag atcatattgc gaaagaacca
     2161 cttactgaac aattagccta gctggtatct atcaactatt gatctagcac acatagtaat
     2221 gtctttcata caaaattgaa gcagcaatac agaaaggtat caactgtgat ccagagtcag
     2281 aagtaaacaa aaatccattt gtagtagact ttggtaaagc aatggtatag actcagctta
     2341 tggtatctct tcatttggca ttgtgataat ccagcttgta gacggtaatc aattacaggc
     2401 attgtatgct tgatactttg agattttaga cgtagtaaaa aataatgcaa gagctctatc
     2461 aacaacaaca acaacaatca gctttgatg
//
LOCUS       DASQSJ010000406         2872 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_307148, whole genome shotgun sequence.
ACCESSION   DASQSJ010000406 DASQSJ010000000
VERSION     DASQSJ010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307148"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VE223_07970"
     CDS             <1..328
                     /locus_tag="VE223_07970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21565.1"
                     /translation="GLALFMFPRIWSIMKKAIHILMEGSPYNISHEEIKESILQIRGV
                     TGIFELHIWTITSGMHALSAHVVIIDRSKSQIILQEINSVLEKKFKITHATIQLETYH
                     SESGRF"
     gene            637..1008
                     /locus_tag="VE223_07975"
     CDS             637..1008
                     /locus_tag="VE223_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC21566.1"
                     /translation="MRILLVDDEPDITLPFRIGLEDSGFEVDAFNDSVMALSKFKDRS
                     YVLALLDIKMPKMNGFELYNELRKINEKLKVCFITAFDVQKEDLKALSELNGNLAIIR
                     KPIAIGDLVKKVKLELGYNQA"
     gene            complement(1225..1761)
                     /locus_tag="VE223_07980"
     CDS             complement(1225..1761)
                     /locus_tag="VE223_07980"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HZC21567.1"
                     /translation="MTEYKYHDKNEKIYPTIKFLCLVGELNELPYGKFSKILVAVDGS
                     QASMDAAEYAIEIAKKDNAQLIALTVSNISFSASIGFPKPPNELREVKEKNELETKEW
                     FNRINKSAEQNKVHLKTELIEREMSIEAEIVEYAEHEGVDLIIIGTKGKSGFKKLVLG
                     SVASGVVKYATCSVLVIR"
     gene            1867..2466
                     /locus_tag="VE223_07985"
     CDS             1867..2466
                     /locus_tag="VE223_07985"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HZC21568.1"
                     /translation="MIEGKEKGANSFLSMPVSSLLHSNVVILDQFKTAADAIAAMKEN
                     SIRSILVSDSNGEIIGLISKTDILYKAAFLHKKSPANIVLEEIMSTPIISITPEMSIS
                     DALSVMEKHVIRQVVVSSGSKVYGIISRDDIMTKMERALEETVTAFKIDAPLCIMSPF
                     ASTSLIDRGSTLTCPHCTREYKNKELLSSHVKTVHSETK"
BASE COUNT          913 a          509 c          536 g          914 t
ORIGIN      
        1 cggtttggca ttgtttatgt ttccaagaat atggtcgata atgaaaaaag caattcacat
       61 attgatggaa ggatctccat ataatatatc acatgaagaa ataaaagagt caatacttca
      121 aataagaggt gtaacaggca ttttcgaact acacatatgg actataactt cagggatgca
      181 tgcactgtca gctcacgtag tcataattga tagaagtaag tctcagataa ttctacagga
      241 gataaattct gtccttgaga agaagttcaa aataacgcat gcaacgattc aattagaaac
      301 gtatcattca gagtcgggca gattctgagc atcaatatta ttcttgcgtg cctgttctgt
      361 ttaccaagat atcctcaaat ccctttcaat accaaaaggc tcttgccagc ttcagcatag
      421 atgtagtata ttctgcagga gaaaagaatc ctaaaaaggt cataattgct taacaataag
      481 gattatgaga acgacctcgg aacgtcgcct tgagaacttt aatgaccaca ggtggttatg
      541 gcagcaaatc ttttgacatc ggcgtgctga cagcaaataa ttacgcataa tatagcttaa
      601 atagtctgtt gttgacgagt atagggcagc aaaataatga ggatattgct tgttgacgat
      661 gaacctgata taacgttgcc ttttcgcata ggtctagaag atagtggatt tgaagtagat
      721 gcatttaatg attctgtgat ggcattgtcg aaatttaagg acagatcata cgttttggct
      781 cttctcgata tcaaaatgcc aaaaatgaat ggttttgaac tatacaatga gctgagaaag
      841 ataaatgaaa aattaaaagt atgttttata actgcgtttg atgtacaaaa agaggactta
      901 aaggcacttt ctgaattgaa tggaaatctc gctatcattc gaaaaccaat tgcaattggt
      961 gatctagtga aaaaagttaa gttagaacta ggctataatc aagcttgatt tagagttagg
     1021 actaataaag ggattccaag tttttgttac tttgatacta tgataatggt aattgttttt
     1081 tcaatgatgc tgcacggtgc caagaatata ctcaaataca ttttggagca ctagaccgaa
     1141 tagtccaaac aggtgtattg ctctgctgca aattcattat aaaaagaggc tagagattga
     1201 gttgaatggt tatatgttgc aaatttacct tattaccagc acagagcaag ttgcatattt
     1261 tactaccccg gaggctacac tgcccagcac cagcttttta aaaccggact tccccttggt
     1321 tcctattata attaagtcta caccttcgtg ttcagcgtac tctactattt ctgcttcgat
     1381 agacatctcc ctctcaatta gttctgtttt taagtgaact ttgttttgtt cagcactttt
     1441 attgattctg ttaaaccatt ccttggtctc aagttcattt ttttctttca cctctcttaa
     1501 ttcatttgga ggttttggaa aaccgatgga tgcggagaag gaaatatttg atacagttaa
     1561 tgcaattaat tgagcattat ctttttttgc aatttctata gcatactctg ctgcgtccat
     1621 tgatgcctga gaaccatcta ctgcaaccaa tattttagaa aactttccgt agggcaattc
     1681 atttaactca ccaacaagac ataaaaactt aattgtggga tagattttct catttttatc
     1741 gtggtattta tattcagtca aagttgctcg ataggcaaaa tagtagatcc attttgatta
     1801 tgtttacctg ttgtttccaa gtagaatctg tatttaaata attctcataa taatatatct
     1861 actgtaatga ttgagggaaa agagaaagga gctaattcat ttttatccat gccagtttca
     1921 tcacttttgc attcgaacgt tgtgatacta gaccagttta aaactgctgc agatgcaatt
     1981 gctgcaatga aggaaaactc tatacgttca attcttgttt cagattcaaa tggagaaatc
     2041 atcggactga tttcaaaaac ggacattctt tacaaagctg cctttttaca taagaaatcc
     2101 cctgcaaata tagtattaga ggaaataatg tctactccaa taatctctat aacccccgag
     2161 atgtctattt ctgatgcact ttcagtaatg gaaaaacatg tcatacgaca ggttgtcgta
     2221 agtagtggat caaaggttta tggcatcata agtagagacg acatcatgac aaaaatggag
     2281 agagcgctag aggaaaccgt tactgcattt aagattgacg caccgctttg cattatgagc
     2341 ccatttgctt cgacatcttt gatagatcga ggctcgacat tgacatgtcc acactgcaca
     2401 agagaatata agaataaaga attactctct agccatgtga agacagttca ttctgaaact
     2461 aagtgaaatc cttggcctgg gtctgatact aaataaactt ctgtaccgct cataccattt
     2521 gattctaagt gcctcttcac cttttgtcat aaaaccgaca tgacaccatc tagcatgaga
     2581 atggttttgt gggttcacta aaggtaatag tcattcttct gttgagttag gcgatgacaa
     2641 tattataatt attattatta tttcctatca taaacattgg ttgactttct tccttattaa
     2701 accgaattgg aaatcattga aggtcgatat gatgattcca tcatgatacc agcagtttta
     2761 ccagtgcgag aatccatagt taggttcaag ccatgtttga ggtcgtgacc tatttccaag
     2821 taagtcctcc agctggtttt tcagggacgg cgctggccac aactaaaagt ac
//
LOCUS       DASQSJ010000407         3072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_272277, whole genome shotgun sequence.
ACCESSION   DASQSJ010000407 DASQSJ010000000
VERSION     DASQSJ010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3072
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272277"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(553..825)
                     /locus_tag="VE223_07990"
     CDS             complement(553..825)
                     /locus_tag="VE223_07990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21569.1"
                     /translation="MSKNSTQNIPQEATKLKKLAKVTARYMEMEEFKDSDHHTGYFCY
                     NCIYFMKPNHCAIVTDAGPDVYEKTSGEIAPHGICSLWEPNKEEMR"
     gene            1201..1377
                     /locus_tag="VE223_07995"
     CDS             1201..1377
                     /locus_tag="VE223_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21570.1"
                     /translation="MSLIIEKEEEEQQEEREAQMQGIPVCGANLSSPVVDQAYYIKEI
                     HYKIGNRTYIENAD"
     gene            1367..1654
                     /locus_tag="VE223_08000"
     CDS             1367..1654
                     /locus_tag="VE223_08000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21571.1"
                     /translation="MQINNNRKNWNTDNNNTEAPNIEEERDLELENIVGNLMIAQYQV
                     DKLRSRLSERVGGYGSASNKKASVHVFKHNEKWYKVTTKVEEVSLDSNAMQ"
     gene            complement(2198..>3072)
                     /locus_tag="VE223_08005"
     CDS             complement(2198..>3072)
                     /locus_tag="VE223_08005"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HZC21572.1"
                     /translation="GSNSGEAFKEQFITCLLDLVSKNSIKNSINKITSYNTRHTESNL
                     INEVAIWLLSELRSFGYTDLYFDKYTEGGYSLKNVICHKHGLMNKIVIICAHYDSITE
                     DINNAEDPAPGADDNASGVAALLEIARVLSKIQLQESIEFVFFSGEEQGQWGSKHYAR
                     HIQENKVDLHWLINLDMVGSPPSNQKRVIIERDMGNKVSNNDRDSQVFGEYMKQIAAK
                     YTDLQAAFGHIYDSDYMPFEALGYVVTGLYDEGQINTTYHSKNDLVSTLNVDYIVSVT
                     KLALATILNRCYKN"
BASE COUNT          968 a          559 c          559 g          986 t
ORIGIN      
        1 aaaagcagga cagaaagtca aggttaagat tgatcgaata ggaaacaggt ctgctacagc
       61 aacaattgta tcttaggtta tactcacaaa attaacaata tagtcagtca caggatgtat
      121 ttctgttatc ccacctaatt catttctatc cgtcgaggcc ttataggtat atgcggccac
      181 aggggccttg ctatctcctc tgcaataatc tccttggaat ggctttgttt aattccatta
      241 gaagaactct gtctttaatt gctctaattc ttgtttggta aaaacccttt ctacctttta
      301 taacctttga tctatctcta tagcagttat ggaggaccgt gcagaaaaag aagatagagg
      361 catctaaatc agtacgagga gaagaaattg ttccacagtg gtgcatggct atgatggcac
      421 ttgactttga cttttgtatg gcagttcaca taccagattc atccgctcta gtggtgttag
      481 gagatccatc tgctgcactt gcctttccta tcattcctct atctttcctt tcatcatttg
      541 ctgttatgtt gattagcgca tctcttcttt atttggctcc cataatgaac atatcccatg
      601 aggcgcaatt tcgccagagg ttttctcgta gacgtctggc cctgcgtctg tcactatagc
      661 acaatgattt ggtttcataa aatagatgca gttataacag aaatacccag tatgatgatc
      721 tgaatctttg aattcttcca tttccatgta cctagcagta acttttgcta acttctttag
      781 ttttgtcgct tcttgtggta tattttgagt ggagtttttt gacatatcta catcgatgac
      841 atgttatgtt atagaggtta ttatttcaaa ccggaatgga cgaatgccat atcttcttgg
      901 aggggttcaa ctgcaactgc agaatattta caaatgatat tagcaaatgt ctaatatgcc
      961 atctaactaa acatccttgt attcaacgcg tcaagaagaa taagattcat ttacaatttt
     1021 tgaagactag aaattttttt atttgcttat aaatggttga ggcctgactt caattaaata
     1081 tatctatctt taatagatag agagggtttt ttcaaaacct gctagatata ttctgaaaat
     1141 tagtatgtgt agtattgtca atatgcttta ttatttgatg tcctccatta attttttaat
     1201 atgagtctaa ttatagaaaa ggaggaagaa gagcaacaag aagaaagaga agcacaaatg
     1261 caaggaatac ctgtatgtgg tgcaaaccta tcatcgcctg ttgtcgatca agcatactat
     1321 attaaagaaa tccattataa aataggaaac aggacataca ttgagaatgc agattaacaa
     1381 taacagaaaa aattggaata cggataacaa caatacagag gctccaaaca ttgaagaaga
     1441 aagagatctg gaacttgaaa atattgttgg caatctcatg attgcacaat atcaagttga
     1501 caaactacga tctaggttga gtgagagggt aggcggatac ggttctgcca gcaacaaaaa
     1561 agcctctgta catgtattca aacacaatga gaaatggtac aaagttacaa caaaagtaga
     1621 agaagtatct ttggatagta atgcaatgca atgaagtctt ggtacattgc ctaaaaaggc
     1681 tctctgctat tgtaactagc ttgtcagccc ttagtgtata ccataactga aggaatagag
     1741 aatctcaggc gatacatagt acctgaactg gatgagagat tcagatatac agtacaagtt
     1801 agagatagaa catggtttca agatttattt agcatacaac ttttttgctg acaataacat
     1861 ccgcatggta tgtctacact ttgtatagat gaaaacacaa ataacttcca tatttacaag
     1921 cagaatatat atgattatct tgctgtcatg tggagtttat aaccaaatca tcaagataag
     1981 ctgacaaaaa atgatcatgg atttatttat gccctagcct caaaattgat aaaacctaat
     2041 ccaaataaga aaaagatagg ttctagtttc tgtcttttat gcttctgata ttgaatacat
     2101 gttcgccatc tattaacata atgtgtaagg taaagtactt ttcagagaaa aagtttagac
     2161 gattttatta tgttatttct gaatctagct taaactatca atttttataa cacctattca
     2221 aaatcgtagc taaagcgagt tttgttactg aaacaatata gtcgacatta agtgtagaga
     2281 caagatcatt tttactatga taagtcgtat ttatctgtcc ctcatcatat agtcctgtca
     2341 cgacgtagcc aagagcttca aaaggcatat aatcactgtc atagatatga ccaaaggcgg
     2401 cttgcaaatc tgtatatttc gctgcgatct gcttcatata ttcgccaaaa acttgggaat
     2461 ctctgtcgtt gttcgatact ttgttcccca tgtctctttc tatgatgact ctcttttgat
     2521 tggatggtgg actgccaacc atatctaagt taatgagcca atgaaggtcc accttattct
     2581 cctgaatatg tcgagcataa tgttttgatc cccattgtcc ctgttcttcc ccagaaaaga
     2641 agacgaattc gatggattct tgtaactgga ttttggaaag aactcgcgcg atctccagca
     2701 aggcggcaac accgctcgca ttatcgtctg cgccaggagc cggatcttcc gcgttgttaa
     2761 tatcctccgt tatactatcg taatgagcgc atataataac aatcttattc attaggccat
     2821 gtttatggca gataacgttc ttaagcgaat atccgccttc tgtatacttg tcgaaatata
     2881 gatcagtata accaaagctc cgcagctcgg ataaaagcca aatagctacc tcgttgatga
     2941 ggttcgattc ggtatgtctg gtattatagg atgtaatctt attaattgaa tttttaatac
     3001 tgttttttga caccaaatcc aatagacaag ttatgaattg ttccttaaac gcttctcccg
     3061 agttagatcc ta
//
LOCUS       DASQSJ010000408         2282 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_392567, whole genome shotgun sequence.
ACCESSION   DASQSJ010000408 DASQSJ010000000
VERSION     DASQSJ010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2282
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392567"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..319
                     /locus_tag="VE223_08010"
     CDS             <1..319
                     /locus_tag="VE223_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HZC21573.1"
                     /translation="LYQDFSERNSMHFGNLNEAQFTLFWKCWEHNLRVINDIIPIIIR
                     NKTYGPAMKIFMAGLIKAGTWAILRYLKGLSKDLFNGQVPEDIIEKYSRKRSVTTSLP
                     PRL"
     gene            complement(321..656)
                     /locus_tag="VE223_08015"
     CDS             complement(321..656)
                     /locus_tag="VE223_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21574.1"
                     /translation="MRFEVEEFSTIEDVFLYLISIAPYMKQVLPVSSYKGYVFSIVPL
                     TPLSGDVLMMVYTKNTLEPGMIEFDIATKKYKTVTAVERADKNYFIVLTPKRATVADS
                     AITYLESKM"
     gene            complement(719..1561)
                     /locus_tag="VE223_08020"
     CDS             complement(719..1561)
                     /locus_tag="VE223_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HZC21575.1"
                     /translation="MVVDNKGTISYIRVLKEDLAIFRVTPNDGPVPDFKAGQFVTLGL
                     HIPTEGKIVRRAYSIASQPEQKKYFELVIRWVRKPVPGRLTTELFSKKEGDEIIWVKP
                     TGIFTINEKLHNGAPDNRRMVLIGGGTGLAPFISYSLHMKAIGSRREIVVLHGASYVD
                     ELSYRELLTELEQESIDGGRDKWNFRYRASISRPQEWFNRSWGGQKGRVETFLRPKAG
                     TDRSPLEELVGEKITTENTSFYVCGWQGTVDGSLDYLVPKGFVTERNKRKDGSYEVKF
                     ESYG"
     gene            1664..1939
                     /locus_tag="VE223_08025"
     CDS             1664..1939
                     /locus_tag="VE223_08025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21576.1"
                     /translation="MEWFKKSFSYPVDEIDQLTQTINEQGSEQRKAMNAFSKAMNSFA
                     TERSLETCLEALNTSIQIANIRGKLVESYEYYARLLEKEITRINKRT"
BASE COUNT          706 a          436 c          397 g          743 t
ORIGIN      
        1 gctttatcag gacttttcag aaaggaattc gatgcatttt ggaaacctga atgaagcaca
       61 gtttacattg ttttggaaat gctgggagca taatcttagg gtcatcaatg acatcattcc
      121 aatcattatt agaaataaga cttatggtcc agcaatgaaa atattcatgg cagggttgat
      181 aaaagcagga acgtgggcta tactgagata tcttaaagga ttgtcaaaag acctctttaa
      241 tggtcaagtt cctgaagaca ttatagagaa atattccaga aaaagatccg tgactacgtc
      301 attaccacca cggctctgat ctacattttg gattccaaat atgtaattgc gctgtctgct
      361 acggttgctc ttttaggagt caagacaatg aaataattct tgtctgcacg ttcgactgca
      421 gtaactgtct tatatttctt tgttgcaata tcaaattcta tcattcctgg ttccaatgta
      481 ttttttgtat aaaccatcat taatacgtct cctgataatg gggttaatgg tactatcgaa
      541 aatacatagc ccttatatga gctaacaggt agaacttgct tcatataagg tgcaatagat
      601 ataagataaa gaaaaacatc ttctatggtt gagaattctt cgacttcaaa tctcatatga
      661 tatcctgcaa tgtttccatg atataaggat ttaaaaagtg aaaataatat aatggaatct
      721 atccatatga ctcaaatttg acctcatagc taccatcttt tctcttatta cgttcagtaa
      781 cgaaaccttt tggaaccaga taatctagcg atccgtctac agttccttgc catccacata
      841 cataaaaaga agtattttca gtggttatct tttcacctac taattcctca agcggtgacc
      901 gatcagttcc tgctttgggt ctcaagaatg tttctactct gcctttttga cctccccatg
      961 atctattgaa ccattcttga ggtctgctaa tgcttgctct gtatcggaag ttccatttat
     1021 ctctaccacc atcgatgctt tcttgttcca attccgttaa taattcacga tagcttaatt
     1081 cgtctacgta acttgccccg tgtaatacaa ctatctcgcg cctgcttcca attgctttca
     1141 tgtgcaagga gtacgatatg aagggagcca aacctgttcc gcctcctatg agaaccatcc
     1201 ttctattatc aggagcacca ttgtgcaact tttcattaat ggtaaagatt ccagttggtt
     1261 tcacccatat gatctcatct ccttcttttt tactaaataa ctctgtagtt aaacgtccag
     1321 ggactggttt tcttacccac cttataacta gttcaaaata ttttttttgc tctggttgag
     1381 aagcaataga atacgctcta cgaacaattt ttccttcagt gggtatgtgg aggcctaacg
     1441 taacaaactg acctgctttg aagtctggaa cagggccgtc attaggtgtc acgcggaaga
     1501 tcgctaggtc ttctttgagt acccgaatat atgaaatcgt acccttatta tcaactacca
     1561 ttcaattttc acatcaattt atgctaaata aatatattgt tacttcatct gtgttagtat
     1621 tagcaagtaa attttattta gagataatgc tttatagcta atattggaat ggtttaagaa
     1681 gtccttttct taccctgttg acgaaataga tcaacttaca cagacgataa acgaacaagg
     1741 ctcagaacag cgaaaggcaa tgaatgcttt ttctaaagca atgaatagtt ttgctacaga
     1801 aagatctctc gaaacatgtc ttgaggctct aaatacatct atacagattg ctaatattag
     1861 aggtaaacta gttgaatcat atgaatatta tgcaagatta ttagaaaagg aaattactag
     1921 gataaacaaa cgcacatgat gtaaattatg ctagttaatt gccaaacttt tagactcgca
     1981 taacactgct tgggaaatac atattaactt gtggccttga aagaccccag gtagaaagta
     2041 ttatctttca ttaatttatt tcaggatcag cttgcgctgt aatgaaatat accacgaagg
     2101 tgtattttga aggtgcaaca ggattaacag ctcaatacct tagcttgggt ttgttagggt
     2161 gtgatgaaga taccggttca ggcagatcta ataaagctta aaaccaataa aatctgacta
     2221 ttatcgaaat acaatacggt ttctgatcat cccgagcttt tcaatagtaa tctcgactat
     2281 gt
//
LOCUS       DASQSJ010000409         2437 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_272375, whole genome shotgun sequence.
ACCESSION   DASQSJ010000409 DASQSJ010000000
VERSION     DASQSJ010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272375"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1110)
                     /locus_tag="VE223_08030"
     CDS             complement(<1..1110)
                     /locus_tag="VE223_08030"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HZC21577.1"
                     /translation="MLITLVALSSCFSSTSILNSVIAKPTTTATSSQFTTTAKESSIM
                     LLNNVKRYLPHASIVLGIITPNGTQVYGYGNISKANSTKVNGNTIFDIASITKTFTTT
                     LLADMVKQGLVNLDDPIEKYLGATVKVPTYNGHKITLEDLATHTSGLPDFPAGWIRNH
                     TYTTQQVYNFLSNTPLQSEPGTKANYSDFGMGLLGHILSIRAGVPYAQLVKDRIQSVL
                     GMDSTGITMNSTVITLSDAVKSRLAKGHIGGKEVNLEFIPEAIQGAGALHSTANDLLK
                     YLAANIGLIHTSINDIIQETHLIRQEYPQAPSLHFSSSSNKSLSASYVGLGWFIDTNL
                     GSEVIQHSGGIDGYSSFIGFNPTKQEGAVLLCSCET"
     gene            complement(1442..1618)
                     /locus_tag="VE223_08035"
     CDS             complement(1442..1618)
                     /locus_tag="VE223_08035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21578.1"
                     /translation="MSAEERDKILQDITRTSHRDLDDELRRRHVEIKDEFIKEQNKMQ
                     EDFKKQKTRKKTSL"
     gene            1855..2349
                     /locus_tag="VE223_08040"
     CDS             1855..2349
                     /locus_tag="VE223_08040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21579.1"
                     /translation="MQFQRKMMLPSIILVGVLLTASFASGVFMHKIVVAAYAQNSNSG
                     RGFGNTTNLSLPNGKSIPINYLINTGKLLGLVLDKSRATLSVNISAPSADNNGNLTIQ
                     IPRDIVDNKKEGNADAPFRVHVDGKDATFKETANDKTTRTLSIHFGKDAKVIDVIGST
                     STVQ"
BASE COUNT          787 a          422 c          423 g          805 t
ORIGIN      
        1 agtctcacaa ctgcataata gtactgctcc ttcttgcttg gttggattaa atccaataaa
       61 gctactatag ccatctattc caccgctgtg ctgtataact tctgaaccaa gattagtatc
      121 tataaaccat ccaagaccaa cataactagc actcaaactc ttgtttgaag aagaagagaa
      181 gtgaagagat ggtgcttgtg gatattcttg tcttatcaga tgtgtttctt gaattatgtc
      241 atttatacta gtatgaatta agccgatatt agcagctaga tattttaaca agtcatttgc
      301 agttgaatgt aatgctcctg caccttgaat tgcttctgga atgaattcaa gattaacttc
      361 tttaccacca atatgacctt tagctaatct ggatttaacg gcatcagaaa gggttattac
      421 cgtactattc attgtaattc ccgtactatc catgcccagc acactttgga ttctgtcttt
      481 aacaagttgg gcataaggaa cacctgctct tatggaaaga atatgaccca aaagacccat
      541 accaaaatca gaatagttag ccttggttcc tggttcactt tggagtggag tatttgaaag
      601 aaaattatag acctgctgag tagtataggt atggtttcta atccatccag caggaaaatc
      661 tggtaatcct gatgtatgtg ttgccaaatc ctcaagtgta attttatgtc cattgtatgt
      721 tggtacctta acagtagcac ctagatattt ttcaattgga tcgtctaggt taactaaacc
      781 ttgctttacc atatcagcta aaagcgttgt agtaaatgtc tttgtaatag aagcaatatc
      841 aaagatcgta tttccattta cttttgtact atttgcttta gatatatttc catagccata
      901 tacttgagta ccatttggag taatgatgcc taacacaata gatgcatgcg gtaagtatct
      961 cttcacatta tttagcaaca ttattgatga ctcctttgca gtagtggtga attgagaaga
     1021 agtagcagta gtagtaggct tggctattac actattgagt atactagtag aagaaaaaca
     1081 agaggataat gcaactaaag ttatcaacaa tattgtaaga tggctgttca aagactcctt
     1141 ctgaaaaatc cctactacaa tatataattt aattcattaa atatcatttc tactaataca
     1201 tcagaactag ctttagattt tacttgtgct atttcctttg cgtactaata atattttgag
     1261 agtatgtcca taactttgta atttttatct tcttagaaca tgctaaagaa cacataatca
     1321 atatcctcgt tttttcaatt cactatttag ccagtccgca gtcatacgat gtgctacttc
     1381 accatcataa tctccttttt caatgctttc cttgagtcga ttaactgctt gattgaattg
     1441 ctcataaaga agttttctta cgagttttct gtttcttaaa gtcctcctgc attttatttt
     1501 gttcttttat aaattcgtct tttatttcta catgtctacg ccttaattca tcatctagat
     1561 ctctgtgaga tgttctggtg atgtcttgga gtattttatc tctttcttca gcactcatat
     1621 atgacatatg cgaatagctt atttacagta tattatatga tttttatatc atcacactaa
     1681 caaaatggaa aataggcaat ataggatgta tctgacgtta ctaaagcagc aggtctagtt
     1741 gagtagcatc aactacacaa gcaattgctg caaaactacc atttcaagat attttcgtgt
     1801 gaatgtcaca cgaacattaa aaaactattt tttctagtat acgttaggtt agaaatgcaa
     1861 tttcaaagaa aaatgatgtt gccttcaatt atattggtag gagtcttgct gacagcatcg
     1921 tttgcatctg gagtctttat gcataaaata gtagtagcag cttatgctca gaattcaaac
     1981 agtggtaggg gattcggaaa cacaaccaac ctttcacttc caaatggtaa aagtattcca
     2041 ataaactact tgataaatac gggtaagctt ttaggtctag tactagacaa gagcagggca
     2101 acacttagtg tgaatatttc agcgccatct gctgacaata atgggaattt aacaattcaa
     2161 ataccaaggg atatagttga caataaaaaa gaaggtaatg cagatgcacc atttagagtg
     2221 catgtagatg gtaaagatgc aacttttaaa gagacagcta atgataaaac aacaagaact
     2281 ttatcaattc attttggcaa ggatgctaaa gttatagatg taataggtag tacaagtaca
     2341 gttcagtaat aatagacgac atctagtagt agcagcagag aaggaccaac catattgtgg
     2401 actatgctca aaggtaacga gcaacgatgg gaaagat
//
LOCUS       DASQSJ010000410         5933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_272468, whole genome shotgun sequence.
ACCESSION   DASQSJ010000410 DASQSJ010000000
VERSION     DASQSJ010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5933
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_272468"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VE223_08045"
     CDS             <1..298
                     /locus_tag="VE223_08045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21580.1"
                     /translation="MLKVENQVEISHGQLGLYMKAPLLICFQFRAIPRLVQEPARRSN
                     IEDFCKRRRNTYERQINRRQYRVNDIVKKFKSKYGEGEVKKYYTKFDVAVEVML"
     gene            548..1087
                     /locus_tag="VE223_08050"
     CDS             548..1087
                     /locus_tag="VE223_08050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21581.1"
                     /translation="MLDPSGSMKAFLALEEEAKKRNISLNTLVNQLFLSYANFDRYFQ
                     RLGMLKMSKLTFRKILKAAPDNEIVELASEVAQNSSRIIILARYGTLSLTSVLDYLNN
                     LADYAYFVERSEVVSPGGKRVITLIHSYGKKGSIFVKAYTKGPFEQINMQPKLSSTEN
                     SHNRSMTDGTVAFNNQKLH"
     gene            1254..1421
                     /locus_tag="VE223_08055"
     CDS             1254..1421
                     /locus_tag="VE223_08055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21582.1"
                     /translation="MSRVLLEYMAVCKAIPKISIGLTPKWFTNRVDKNAESIRSTTPI
                     GRNASPDENEE"
     gene            complement(1868..2143)
                     /locus_tag="VE223_08060"
     CDS             complement(1868..2143)
                     /locus_tag="VE223_08060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21583.1"
                     /translation="MKAKELLPLIIIVSITLVIGAVLFAAEITPEQTIVNFNPMSEMS
                     IKNDLKVLNTPTAGDNSFIYSQMNLGDTISMMRVSLNIVVRFIPQMG"
     gene            complement(2586..3443)
                     /locus_tag="VE223_08065"
     CDS             complement(2586..3443)
                     /locus_tag="VE223_08065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21584.1"
                     /translation="MTARNNDDPFSDWPDLIDKAVYSIDGKNLGFLRKIHLDYMVVGG
                     GIISLKKYFIPKSLAESVSRKGIRLTITAYEARSKYSYAKMKSLVTIFKFMPEYAVED
                     RAFYDRVQILRYHVTRNRLAAGIAFVSGVLLLLSGYKATLEIYSLITQEIILHTSQQF
                     WIFLLIPFRVLAVLSQLGGITVLIGAALFAANRVNIAKFSLSIGTGQGLFTIVFHILS
                     EITSSPSARLTLGDHYFTWLTSTMAGMGILFAVMAQSISKGKCESIISKMLGFLGLRK
                     LILILKKKI"
     gene            complement(3911..5266)
                     /locus_tag="VE223_08070"
     CDS             complement(3911..5266)
                     /locus_tag="VE223_08070"
                     /inference="COORDINATES: protein motif:HMM:NF024642.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HZC21585.1"
                     /translation="MTLGFDTEQLRVLSWRASTKDIAAVVGPPGCGKTTVGSALAVTM
                     VAEGLANRVLLVAYTNAAANEFCLELCDMLGPVGAKTLCLRTGNPTGFDPSIPIPFSR
                     SANEIKEKRIIISTNLSLKKLPALSFDNMIIDEAGVERLEHLLWPFWFGVNKSQAEEY
                     KSKYDTLRGDGDGDTQIPFKIHDLIELISQCGTVATVVGDPKQSRPISPMRVDYSAIE
                     WVIKKSTCDTLRISHRLPDLLSGLVNEFAGYDGLRSAPEISSRRLVLECSPDTEYREI
                     IQPDEVTTWVDINGEEQPIGPSSWANNMEAKACAKICSHLIRITRSKSIAIITRFKAQ
                     KLTIMRYLQRMGHRDIKVTTTTGALGTQADIVLFSLTRNNPERNVGAAGTLQDLNVAI
                     SRSKEKLIILGNFDMMSNGWSGGASAGNKYQYKSSARKLARLIDLKYGRVVDAPQMII
                     C"
     gene            complement(5658..>5933)
                     /locus_tag="VE223_08075"
     CDS             complement(5658..>5933)
                     /locus_tag="VE223_08075"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HZC21586.1"
                     /translation="FFPLLSVHTLEIGYDVRDVSVAIILATSSNINQIVQRIGRIVRK
                     AEGKDTALIYTISLSHTHDINTLAMVRQATNMENQSMQHDTLDKYMF"
BASE COUNT         1736 a         1168 c         1103 g         1926 t
ORIGIN      
        1 aatgttaaag gtagagaatc aggtagagat atcccacggc cagttaggtt tgtacatgaa
       61 ggcaccactc ttaatttgct tccagttcag ggcgataccc cggctggtac aagaacctgc
      121 tcgtcgatcc aacattgaag atttctgtaa acggcgtaga aacacctacg agaggcaaat
      181 taatagaaga cagtataggg ttaacgatat cgtgaagaaa ttcaaatcca aatatggcga
      241 aggggaagta aagaaatatt atacaaaatt tgatgtagca gttgaagtca tgctatgaca
      301 aaatgttccg aggaagtgat tatactagca attaattaag cgattagtta tctaatcatg
      361 caaaatgtag agatgaatga gccttatttt ttaacattca gtagcttctt taaaacccaa
      421 gctaacctaa acggcgtaca agtgcaataa taatcaagaa ttgacttttc ataccacaga
      481 gaagaataga aataagagaa ccaggatata ggcttcagtg tttgatcaaa attgccggaa
      541 aagacagttg ctagatcctt caggatcaat gaaagctttc ttagctcttg aggaagaggc
      601 caagaaacgc aacataagcc tcaacaccct tgtgaaccaa ctttttctat cctatgccaa
      661 cttcgatagg tacttccaaa ggcttggcat gctaaaaatg tctaaactaa cgttcaggaa
      721 gattttgaaa gctgccccgg ataacgaaat cgttgaactg gcaagtgagg tagctcaaaa
      781 cagctcgagg ataattattc ttgcaagata cgggacactg tcgctcacaa gcgttctgga
      841 ttatcttaac aaccttgcag attacgccta ttttgtagag cgtagcgaag ttgtttcacc
      901 gggtggaaaa cgagtaatta cgttaatcca tagctacggg aaaaaagggt caatctttgt
      961 caaagcttat accaaaggtc cctttgaaca gatcaatatg caaccaaaat taagttcgac
     1021 agaaaactct cacaatagaa gtatgactga tggtactgtt gcgttcaaca atcaaaaact
     1081 tcattagctt tgatggacga atgctgctgc cattactcta tgttgatgtt gtctttgctg
     1141 cccgagtgaa ccagcgaaga tagttcagat accatttagc agtgcggccg ccaagaaagc
     1201 gtagccaaat cctgttaccg ctgccagtgc tgctgtatgc agggtttcat aatttgtcaa
     1261 gagtactgct ggaatacatg gccgtctgca aagccattcc caaaattagt attggtttga
     1321 caccaaaatg gtttacgaat cgcgttgata aaaacgcgga atcgatcaga agtacaacac
     1381 caataggaag aaatgcaagc ccggatgaaa acgaagaata atcgcactgc cgctgaagat
     1441 aattggtcag aataaaaatc cttgctacaa acgccgctac caggagcaag cccacttcat
     1501 ttgcaccaaa gattgagctt cgcagaaata caagaactag ttgccgaaga tttaaaatag
     1561 tccttacttt agataataac gaaaagctcg acttgttgtc tgtgtattga aatttgccat
     1621 tctccactat cgttgaaaat gggttgttat ggattagttt aagtctgaga tgtattgtcc
     1681 gttcttgatt tgaacaatta tcttttcctg gctttatctg ttttagataa cactttcaaa
     1741 gacaaatatt aatccttttc cattagtgct gccaaaaggt agaaaacgca atatgatcct
     1801 tattatcggt atattcaata tcgttattgt gtttcggaca cgctatgtga tactatgatt
     1861 ttgcctttca tcccatctgt ggaatgaatc gtacaactat attcaaagac accctcatca
     1921 ttgaaattgt atctccaaga ttcatttggc tgtatatgaa actattatct ccagcagtag
     1981 gtgtatttaa tactttaagg tcgttcttta ttgacatttc agacatggga ttaaaattga
     2041 ctatggtttg ttcaggcgta atctcggctg caaacagaac tgcccctatt actaaagtta
     2101 ttgatacaat aattattaac ggaagcagtt ctttggcttt catgattcaa taatatctgc
     2161 acttatttct acattaatct ttgacatata acgggctgta gaaacaactc gacatgtatc
     2221 cagtggtgca gtcgaatcta tgtctttaat ggttttggcg aaatttaaat attaatatta
     2281 caatctctga tacctgttga ccacgtttac cttttctaaa ctgtttttag ctggtgttat
     2341 cgctttattt gcatctatgg tttccgatgt atataatcat gctagaggag tttatggaac
     2401 caatgtatat acattaatac ccataattct tgttgctata ggactaggat tagttggtta
     2461 tgatttctgg agacgtatgc attgattttt ctccaattca tctgatatta ttgctgctat
     2521 cgtttgtaaa gtcactccta aacaagttga taataggcaa gatatatgtt cagaatacct
     2581 taattttata ttttcttttt tagtatcaat attaactttc ttaatccaag aaatcctagc
     2641 atctttgata tgatgctttc gcatttacct tttgaaatcg attgagccat tactgcaaat
     2701 aatattccca ttccagccat agttgatgtt agccatgtga aataatgatc tccaagtgtt
     2761 aatctagctg aaggtgacga tgttatctct gaaagaatat gaaagacaat agtaaataat
     2821 ccttggcctg ttccaatgga taacgaaaat tttgcaatgt tgactctgtt tgcggcaaac
     2881 agtgctgctc ctatcagtac ggtaattcct ccaagctggc ttaggacagc tagaactcga
     2941 aatggaatta gtaaaaaaat ccaaaattgt tgagaagtat gcaaaataat ctcttgtgta
     3001 atcagactat aaatttccaa ggttgccttg tatcctgaaa gcaaaagaag tactccagaa
     3061 acaaacgcaa ttcctgctgc tagtctattc ctggtgacat gataacgcag tatctggacc
     3121 ctatcataga atgctctatc ttctactgca tattcgggca taaacttgaa aatagtaaca
     3181 aggcttttca tttttgcata agaatatttc gagcgcgctt cataggctgt aattgttaat
     3241 ctgatccctt ttctgcttac tgactcggcg agcgattttg gtataaaata tttttttaaa
     3301 ctaataatgc ctcctcctac aaccatataa tctaggtgga ttttcctaag gaagccaaga
     3361 ttttttccgt caatagaata cactgctttg tctattaggt ctggccagtc tgagaatgga
     3421 tcgtcgttat ttctagcagt cacaggagat ataataagta atggttcccc aaattattat
     3481 tgttatgctt tacgcgctgt atgaacgctt cttgatatga taattgacac agttcttgat
     3541 ttctacatgt tttctttaaa gttatagtcc tttaaactat ggcttttaac acaaatgcat
     3601 cactatccct atctcaaaat tacaattcat tctgagtacc ggtgtaacta tctagtctat
     3661 agtagttgca atattattta tatttaagtt cataattgtt ctggttcttc ctgtttggaa
     3721 attatgataa cctatgatat tgtatatgac ttttttacgt cactagcaag ggctatagtt
     3781 acatttctct tggcatggga gatcttgaaa cgttctgaat ggactttagc gcgatgatac
     3841 tgtgttgcct tctaaatcgg tttgttgcct aacgtatatt aagacctttg cgtgctacga
     3901 tctatgacta ttagcagatt atcatttgcg gtgcatcgac cacccttcca tatttcaaat
     3961 cgattagtct agccagcttt cttgctgagc ttttatactg atatttgttg ccggctgaag
     4021 caccaccact ccaaccattt gacatcatgt cgaagttacc taatattatg agcttttctt
     4081 ttgatcttga tatggccacg ttcagatctt gtagcgttcc ggctgcgcct acgtttcgtt
     4141 ctgggttgtt cctagtcaaa gagaaaagaa caatgtcagc ttgagttcct aacgcaccag
     4201 ttgtagtggt tactttaata tccctatgac ccattctttg caaatatctc attatggtta
     4261 gtttctgagc tttgaatctt gtgataatcg caatcgattt actccgcgtt atgcgaatta
     4321 aatgactgca aatctttgca caagcttttg cttccatatt atttgcccat gatgatgggc
     4381 cgataggctg ctcttcacca ttgatatcaa cccatgtcgt gacctcgtca ggttgaataa
     4441 tttcgcgata ttccgtatct ggagaacatt ctaatactag cctccttgag cttatttctg
     4501 gagcagatct caatccatca tatcctgcga attcatttac tagccccgac aggagatctg
     4561 ggagacgatg tgaaatacgc aatgtatcac acgtcgattt ctttatcacc cattctattg
     4621 cactgtagtc tacgcgcatt ggacttatgg gccttgattg ctttggatcg ccaaccactg
     4681 ttgcaacagt gccacattgt gatatcagct ctataagatc atggatttta aaagggattt
     4741 gtgtatctcc atctccatct cctcgaaggg tatcgtattt acttttgtat tcttccgctt
     4801 gcgatttatt gactccaaac caaaaaggcc acagtaaatg ttctaacctt tcaacgcctg
     4861 cttcatctat aatcatattg tcaaagctta aagcgggtaa tttcttgagc gacaggttcg
     4921 tagatattat aatccttttc tctttaatct cattggcaga tctgctaaag gggattggta
     4981 ttgagggatc aaatcctgtt ggattaccgg ttctgagaca cagcgtcttt gctcccactg
     5041 gacccagcat gtcacagagc tccagacaaa actcattggc agcagcattc gtataggcta
     5101 ctaacagaac cctattagcg agaccttcag ccaccatggt gacagctaag gcactcccta
     5161 ctgttgtctt gccgcaacca ggcgggccta ctactgctgc aatatcttta gtgcttgcac
     5221 gccagcttaa aactctaagc tgctctgtat caaaaccgag ggtcattctg attacctgaa
     5281 gaaaactctg ttcgtttcgt atagatatct ctaataatcc tggtacttaa tcgataataa
     5341 atctccttta tctttccgtg ccttttgacc tctcttggca tagacagtaa acattggctt
     5401 aatgactgtc cagtcataca catgaattta tcaaagacac atgtttgaag gtcttcaatc
     5461 atgttgttca acaatataac ggctgacttc tttattaatc ttgtgcatgt tgttcaatat
     5521 agcaaaaaat tgttcgatat ttgccatcta gcaggaggct tccaaaattg tttttgtatc
     5581 atattgtaga gggaataaca tcttaattgt ttgatcttaa cgagatgcac ataatttgac
     5641 tacttccggc ggacggttta aaacatgtac ttatccagag tgtcgtgctg catcgattga
     5701 ttttccatat ttgttgcctg tcttaccatc gctaaagtat tgatatcatg agtatgtgac
     5761 agggatatag tgtatattaa tgctgtatcc tttccttcag cctttcttac tatcctgcct
     5821 attctttgta ctatttgatt gatgttggac gatgtcgcta gtattattgc tacactaacg
     5881 tcccgtacat catatcctat ttctaatgta tgtactgaaa gtaatggaaa gaa
//
LOCUS       DASQSJ010000411         3042 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_308478, whole genome shotgun sequence.
ACCESSION   DASQSJ010000411 DASQSJ010000000
VERSION     DASQSJ010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308478"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            787..1644
                     /gene="folP"
                     /locus_tag="VE223_08080"
     CDS             787..1644
                     /gene="folP"
                     /locus_tag="VE223_08080"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HZC21587.1"
                     /translation="MTSIGAVVVRDNVPVKVMGIINISPESFYENSIKTSAKEIANTA
                     RKMQQDGAHIIDIGAMSTAPYLKTAISVEEEVRRMKFAIAAVKKGCDLPISIDTPRSE
                     VAKEAIKFGIDAINDITGLKYDQNMSHLVSKAKIPVIIGASGIKRSCSTLGNISGTIN
                     VLSESLEIAKRDRIHDKNILIDPSIGFFRLEGTNSFFTKTRDLVWYTRDIEVISKLRR
                     LKVLSKPICISVSRKSFIGELFHLKTEERLAPSIACEIISVLNGANLIRTHDVKETVQ
                     TLTMLELLH"
     gene            1915..>3042
                     /locus_tag="VE223_08085"
     CDS             1915..>3042
                     /locus_tag="VE223_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HZC21588.1"
                     /translation="MQIKEGLTFDDVLLVPKRSPIISRSQTDLKTKLSRNITLNIPLI
                     SANMDAVTESSMAIALAREGGIGIIHRFMSIADQVDEVLKVKRSESVMIEQPYTIRSN
                     MTVHDAKNLMHEYGVSGLLVEEDGRRLAGIITRRDITFETNSQSKVSDLMSKDVIVAK
                     HGTTIEQAKKILHDHRIEKLPVIDDSNRIVGLITSKDILKMDQYPHASKDKKGRLLVG
                     AAVGVKGDYLERTEALLESGSDIIVVDIAHGHSDNAMNTVHMIKKAFPNCELIAGNVA
                     TGEGANDLINAGVDAVKVGVGSGSICITRVITGSGVPQLTAIMDSVKAAKEYDIPIIS
                     DGGIRTSGDATKALAAGSSSVMVGSLFGGTDESPGKTMIKNG"
BASE COUNT         1026 a          490 c          637 g          889 t
ORIGIN      
        1 cttccatttg gcggtaccaa atactcaggt ataggtaggg aattatctga atttggtatt
       61 aaagaattcg ttaatatcaa atcaatagta gtaaaagata ttacaagtaa actactcgta
      121 gagtaaaatc gatataagaa tagccttttt tggttctgtt gactcccatt attttatttc
      181 gtatttgaga ttaaattagg cgcagcccaa gccgtttgtg ctattctttt ctttacttga
      241 atatcctttg cccgtaaaag tatcctaatt attacagagt gtacccatcg ctgaatgtaa
      301 taatttgcaa tgaatgtttc ctgagattgt tatttggttg tgtatgtgat ataatatctt
      361 ctattggccg atctagagta gtgacaaagg aatatctatc acaaactggc gatggctaga
      421 tagaactata tatggaatac tgctgcgcaa tccaaatatt ctcaagccat agtatatgaa
      481 tatttcaaaa aaccatgcga gggattatcg aagaagattt attgcagcaa attctaaatg
      541 tgttggatgc taatgaggtg taggaagagc cggctgaaat gatatataag ctatgtcaag
      601 acatatgatg aagattatga gttcctgaag catcctagta tcactatggg aaagcattta
      661 ttggtttgga aatcatagtg ctttttaaga ggtcagcctc tttttcccag ttttgattag
      721 attctctaaa gctagcttta gagttatagg aaatggttaa aggacacaat aaaagaaatt
      781 tgctaattga cgtcgattgg cgcagtagtt gtcagagaca acgtaccagt taaagtgatg
      841 ggaataataa acataagtcc agaatcattt tatgaaaact ccattaaaac gagtgctaaa
      901 gaaattgcta atacagctag aaagatgcaa caagatggag cccacattat agatattggt
      961 gcaatgtcta cagcacccta ccttaaaacc gctatttcag ttgaagaaga ggtaagaaga
     1021 atgaaatttg ctatagcagc agtaaagaaa ggttgcgatt tacccatttc gattgatact
     1081 cctagatcag aggtagctaa agaggctatt aaattcggca ttgatgccat caatgatatt
     1141 acgggattaa aatatgacca aaatatgagc catctggtat caaaggctaa aataccagtc
     1201 attatcggtg cttctggtat caagcgatcc tgctctactt taggtaacat atctggtacc
     1261 ataaatgttc taagtgaaag cttggagata gcaaaaagag ataggatcca tgataaaaat
     1321 atacttattg atccatccat agggtttttc agactagaag gtacaaattc attcttcaca
     1381 aagaccagag atcttgtatg gtatacacgt gatatagaag tcatctcaaa gttaaggagg
     1441 cttaaggtgc tttcaaaacc aatctgtatc tcggtttcca gaaaatcatt tataggcgaa
     1501 ttatttcact tgaaaaccga ggaacgatta gcaccatcga tagcgtgtga aataatatct
     1561 gtattaaatg gcgcaaacct aatcagaaca cacgatgtta aagagactgt acaaacactt
     1621 acaatgttag aactactgca ttaggacgat ttgtggtgtc tacaatgtga atagtaatca
     1681 tatagtatgg atttgtattt ccactgtgag gctacctata ccctcgacag agatcactta
     1741 tgtcgtgtta acagcgttcg tattataatg catatcaaca atgctatctt caggcattca
     1801 ttgaggaggg atgggtggat ggattgatat atacaattac gccagagatt ttaagagtaa
     1861 actaaaataa actaaacgct tataatccta aattaactaa ttcctacaca acgattgcaa
     1921 attaaagagg gcctaacatt tgatgatgta cttcttgtcc ccaaacgatc acctataatt
     1981 tctagatctc agactgattt aaaaacaaaa ctttcacgta atattacact gaatatacca
     2041 cttattagcg caaatatgga tgccgtcaca gaatccagta tggctatcgc tttagcaaga
     2101 gagggtggta ttggcattat tcatagattt atgtctattg cagatcaagt agatgaggtt
     2161 ctaaaagtga aacgttctga atctgttatg atagaacaac catatactat ccggtcaaat
     2221 atgacggttc acgatgcaaa gaatttgatg catgaatacg gagtatcagg tttattagtt
     2281 gaagaggatg ggagaagact tgcaggtatt attactcgga gagatatcac ttttgagacg
     2341 aattcgcaga gcaaggtttc cgatctaatg agcaaagacg tcattgttgc aaaacatgga
     2401 accaccatag aacaagccaa aaaaattcta cacgatcata gaattgaaaa gttgcctgta
     2461 attgatgata gcaaccggat agttggactt ataacaagta aagacatttt gaaaatggat
     2521 caatatccac atgcttccaa ggataaaaag gggagattgc ttgttggagc agcagttgga
     2581 gtgaaaggcg attatttgga acgcacagaa gcgctcttag aatcaggttc tgacataata
     2641 gtagtagaca tcgctcatgg tcacagtgat aatgctatga acacagtgca tatgatcaag
     2701 aaagcttttc ctaattgtga gcttattgct ggaaatgttg caaccggtga aggcgcaaat
     2761 gatttgatta atgctggtgt ggatgcagta aaagttggtg tgggatctgg ttcgatttgt
     2821 attacacgag taattacagg gtcgggcgtt ccgcaactaa cagcaattat ggacagcgtt
     2881 aaagctgcaa aagaatacga catccctata atctctgatg gaggcattag aacttcggga
     2941 gatgctacta aagcattagc agctggttca tcttcagtga tggtcggtag cttatttggt
     3001 ggaactgatg aaagtccggg gaagacgatg ataaagaatg ga
//
LOCUS       DASQSJ010000412         3626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_309180, whole genome shotgun sequence.
ACCESSION   DASQSJ010000412 DASQSJ010000000
VERSION     DASQSJ010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309180"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1790
                     /gene="glmS"
                     /locus_tag="VE223_08090"
     CDS             <1..1790
                     /gene="glmS"
                     /locus_tag="VE223_08090"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HZC21589.1"
                     /translation="FLLLFVCSIIGYKGKSLAAPLLIDSLKRMEYRGYDSVGIATITD
                     GKILVRKGVGKVAEVNKSLELVRMPGLVGIGHTRWATHGGVTGNNAHPHSACTKDIAV
                     VHNGIIENYDALKEELILLGHRFKSQTDSEVIAHLLETHYSRERNIKQAMIETCKRLK
                     GTYAFVAVFEEGAISGARFDEPLIIGIIDNGYFISSDILGFLKYTDKAIFLDNKDIAI
                     VNAGKLELFDFEGFSVKRPTTQVAWELGAAEKGAYAHHTLKEIHEQVHTVIEGIGSDD
                     KEKIGTFCNFLTNAKSIYITGSGTSYHSALILKHIFGKFAKIRSETIMSSEFQYIALD
                     SIDETSVLIAISQSGETADVLQSVKAAKQKGAKILSVVNVPTSSLARISDSSLNVNCG
                     PEIGVAATKSFTGQLSVLYNVTDRLCNGCVGIEANKSELIGALNLILAAENNIANMVN
                     IMDDVKDIYILGRSLHYPIALEGALKIKELAYIHAEGIAAGELKHGPLALIDKNTMVV
                     VINPLDATFNDTVSSAHEIKARGAIVIGISDKENNLYDHFIKLPKIKETLFPLIEVIP
                     LQTLAYYLALKKNVDPDYPRNLAKSVTVK"
     gene            2052..3518
                     /locus_tag="VE223_08095"
     CDS             2052..3518
                     /locus_tag="VE223_08095"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HZC21590.1"
                     /translation="MTSLDKRDHDIIIAGGGLAGMIAASSAAYYSGQTLSVLVVDRNP
                     LCEVGKKTITGWICGDAVGKNTVDYMSNRIGIKWGYPEIEHPVKGVMAYSPDHETAVP
                     FDGDGYILNRKLLPQKQTKDALKAGVEVKGMVALRSLLVENNSNTVIGVEGDDLANKS
                     TFKKTAKLVIDCTGVTSVLRTNLPVKSFIQRRIHRDDLEGTGRYIYNFDIANEDKTFF
                     DPDYCIIHLDQKLAPGGYAWVFPKGKNKVNIGLGIQQKAFDAMNKREGVHKNLKTLID
                     EYVQLNTVISKPKISKSETDEGNSWGTWQVSVRRQNDCMVANGYMLVGDAAWMPKPLD
                     AGGIGPAIIAATIAGRVAVEAIQSNDTSQRGLWKYNKEFINDYGYKTAGLEVFRRMLQ
                     GLTNEQINYGMKHFLSKMDVDKISKGEHPEFGTVDKIGIFIRGALNKKLAENLAYTSR
                     LNKKLVEHYYNYPDNPETFTHWQQILNNYLDEAFSKFK"
BASE COUNT         1225 a          632 c          770 g          999 t
ORIGIN      
        1 aatttctttt gttattcgtg tgttctatca taggatataa aggaaaatcg cttgcagctc
       61 ccttactaat tgacagtctt aaaaggatgg agtatagagg atatgacagt gtgggtattg
      121 ccacgattac tgatggcaaa attcttgtgc gaaaaggagt aggcaaagta gcagaagtaa
      181 acaaatctct tgagttagtc agaatgccag gactagtggg aattgggcat actagatggg
      241 ccacgcatgg cggagtaact ggcaataacg cacatccgca ttcagcttgc acaaaagata
      301 ttgcagttgt tcataatgga attatcgaaa attacgatgc attaaaagag gaattaattc
      361 ttcttggtca cagatttaaa agccagactg atagcgaagt catagcacac ttgctcgaaa
      421 ctcattattc aagggaaagg aatataaaac aagcgatgat cgaaacctgt aaaaggctaa
      481 aaggaactta tgcctttgtc gcagtctttg aagaaggtgc catcagcggt gcaagatttg
      541 atgaaccatt aataatcggg ataatagata acggatattt catatcaagt gacatccttg
      601 gctttctgaa atatacagat aaagctattt ttctggataa taaagacatt gcaattgtta
      661 acgcaggaaa attagaatta tttgactttg aaggtttttc tgttaaacga cctactactc
      721 aggtagcctg ggaactagga gctgcagaaa agggtgccta tgctcatcac actttaaaag
      781 agatccatga acaagtccac accgtaattg aaggaatagg tagtgatgat aaggaaaaga
      841 tagggacatt ttgcaatttt ctgaccaatg ctaaaagcat atacattaca gggagtggaa
      901 cgagttatca ttctgcgcta attctaaagc acatctttgg caaatttgct aaaatcagat
      961 ccgagactat aatgtcaagt gaatttcaat acattgcatt agattctatt gatgaaactt
     1021 ccgtcctaat cgcgatttcc cagagtgggg aaacagccga tgtattgcaa tctgttaaag
     1081 cagctaaaca aaagggagca aagatacttt ctgtagtaaa tgttccaact tcatcattag
     1141 ctcgaattag tgattcctct cttaatgtga attgcggacc tgaaatcgga gttgcagcca
     1201 caaaaagttt tactgggcaa ctttcggttc tttataacgt tacagatagg ttatgcaatg
     1261 gttgcgttgg aattgaagcg aacaaaagcg aacttatcgg agcgctgaat cttattctcg
     1321 ctgcagagaa taatattgcc aatatggtaa atataatgga tgacgtaaag gacatttata
     1381 ttttaggaag atcgttgcat tatcctatcg ctcttgaggg cgcattgaaa ataaaagaac
     1441 tagcatatat acacgcagag ggtatcgcag caggtgaatt aaaacatgga ccactagcac
     1501 taatagataa gaacactatg gtggtagtaa ttaatccatt agacgcaaca ttcaatgata
     1561 ctgtctcaag tgcacacgag atcaaagcta gaggtgcaat cgtgattggg atttcagaca
     1621 aagagaacaa tctctatgat cactttatca aactaccaaa aatcaaggaa accttgttcc
     1681 cattgataga agtgattcca ctgcaaactc ttgcatacta tctagctctt aagaaaaatg
     1741 ttgatcctga ttacccccgt aatctagcca aatcagtcac ggtaaagtag tgtgaagtac
     1801 aggtccctgc gttaattata gtggacatag acctttactg gttgaatagc gacctaaaag
     1861 attcgctagc ctgtatagtt tttcgttatt gattcataga acaggatata gtgttttttg
     1921 accggctctg attttattct tgcaaatcca aggtctgtga tataccacat tatcaaacat
     1981 gccttgacta tacttactac aaccttaatt aactataaat agcctttaga taattcacgc
     2041 gtatcagttc aatgacgtct ctagataaac gagatcatga cattataata gcaggaggcg
     2101 gtcttgcagg aatgatcgcg gcctcatctg cagcatatta ttcaggacaa actctaagcg
     2161 ttctcgttgt cgataggaat ccattatgcg aagtaggcaa aaaaactatt acaggatgga
     2221 tatgtggtga cgctgttgga aaaaatacgg ttgactacat gtcgaaccga attggcatta
     2281 aatggggata tcctgaaatt gagcatcctg taaagggtgt aatggcgtac tcacctgatc
     2341 atgaaacagc tgtgcctttt gatggagatg ggtacattct aaatagaaaa cttttacctc
     2401 aaaaacaaac caaggatgca ttgaaagccg gagtcgaagt gaaaggcatg gttgctttac
     2461 gctccttact tgtagagaat aatagtaata cagtaattgg ggttgaaggt gatgaccttg
     2521 ccaacaaatc aactttcaaa aagactgcaa aactagttat agattgtact ggtgttacct
     2581 cagttttgag aacaaatctt cccgtaaagt catttattca aaggagaata catagagatg
     2641 atctagaggg aactggcaga tacatttaca acttcgacat tgcaaatgaa gataaaacat
     2701 tttttgatcc agattactgc attatacatc tagatcagaa actggcacca ggaggctacg
     2761 cctgggtatt tcctaaggga aagaacaagg tcaacattgg tcttggcata cagcaaaaag
     2821 cgtttgatgc gatgaacaag agggagggtg ttcataagaa cctgaaaaca ctgatagatg
     2881 aatacgtaca actgaacacc gtcatttcaa agccaaaaat ttctaaaagc gaaactgatg
     2941 aaggcaatag ttggggcacc tggcaagtct ctgtcagaag gcagaatgat tgcatggttg
     3001 cgaacggata tatgcttgtt ggagatgctg cttggatgcc aaaaccactt gacgctggag
     3061 ggattggccc tgcaattatt gcagctacta ttgccggaag agttgctgtg gaggcgattc
     3121 agtcaaatga tacatcccag aggggtttgt ggaagtataa caaagaattt atcaatgatt
     3181 atggatataa gacagcaggc cttgaagtat ttcgtaggat gttacaggga ttgacaaatg
     3241 aacaaattaa ctatggtatg aagcattttt tgtcaaagat ggatgttgac aagatcagca
     3301 aaggggaaca tccagaattc ggcactgtgg acaaaatagg catttttata agaggagcac
     3361 ttaacaagaa gttagcagag aacctagctt atacttccag attaaacaaa aaactggtag
     3421 aacattacta taactatcca gataaccccg agacctttac ccattggcag cagattttga
     3481 ataactacct ggatgaagca ttttcgaaat tcaaatgatt gatttgttag agtctatttc
     3541 gtcattgaaa gcacctattt taacaataat ataataaaga accaaaccaa tctagatatt
     3601 actttccaaa ctatggcctc agtagc
//
LOCUS       DASQSJ010000413         2784 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_394443, whole genome shotgun sequence.
ACCESSION   DASQSJ010000413 DASQSJ010000000
VERSION     DASQSJ010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_394443"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..292
                     /locus_tag="VE223_08100"
     CDS             146..292
                     /locus_tag="VE223_08100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21591.1"
                     /translation="MFVVKPSVTRVIFLSSSNKSSLSLFLGDDVCSGGVNISPIDLFE
                     RLAM"
     gene            complement(866..1882)
                     /locus_tag="VE223_08105"
     CDS             complement(866..1882)
                     /locus_tag="VE223_08105"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HZC21592.1"
                     /translation="MKAVIFEKPGLDNLKVEDSAEKPKLTDHAVLIRVMTVGVNPIDY
                     FAVSGAREVKPLPHIPGAEISGTIEKLGDHVKEGNLKEGDKVVIHNKVFDGTCDMCLD
                     GLDMLCRNGGLIGIVTNGGFAEYISVPEKNVFKIPDDMSWDLAASLPVTTLTSYHALK
                     DASLQVNESLLVYGASGNTGMMAIQFAKKMGAKVIAVSKNEWVKDFGADYILNDYGKV
                     VEQVKEITQGKMADVVLNSIGIEAWQSSFDSVGVNGRLVTFGGLSGADVKLNIQSLYL
                     KQMKLIGSTGGTRKQLKDLLNVSNELKIRVWKRFKLEKTKEALQALFAKGRDGRILID
                     VGRS"
BASE COUNT          851 a          515 c          436 g          982 t
ORIGIN      
        1 tacaaacaca agaacagaca caagtagtag gtgattatta ttataacact atcatctgtg
       61 aagatgctta tctgtcttaa agacatttga tactaatagt atagattgtt gtgtttgttc
      121 tcctccatac tggcagcaac aaaatttgtt cgtagtaaaa ccctcagtta ctagagttat
      181 tttcctatct agtagtaata aatcgtcact atcattattt ctaggcgatg atgtatgcag
      241 tggtggagtt aatatttcac caatcgattt gtttgaacgc cttgccatgt aatgtgtttg
      301 agtatgaagt atgatgataa taatactttg tatgagagaa tattacatca caataacgtt
      361 ttttcaagag attgattttg atatcatgtc atggtgaaaa tgataatgat aatgattcct
      421 tagttctata ttcaagcgca catgcagtca attctatttt gtatgctcat ttttcagtag
      481 gagagcatgg ttctggatca tctggacatt gctgacttgg gccaataata acgtagatat
      541 ccatctactc ctttattgca acttacatct tattgttttc ttcgaaggtt caaacatttt
      601 ttcctattag tgaagcatca ttaattcttt ttgctatagt atatcaaaaa taaaaacttc
      661 aagaaggttg ctcagtatct tatttctgat ttcaagagac cacgttgttc tatgttttgc
      721 atagcacatc caagtgtatc catttgttat cagaatctta tcctgaagtt tttattttta
      781 tatctagctg aatcttaaca tgatttagtt ctcaataaat ccggtaatga tatccaagtg
      841 cttaagtaat atcaaacgat gtcacttaac tcctaccgac atctattaga attctgccat
      901 ctcttccttt agcaaacaat gcttggagag cttctttggt tttttcaagt ttgaatcttt
      961 tccatactct aattttgagt tcgttagata catttagaag atctttaagt tgctttctgg
     1021 tgccaccagt agaacctatc aacttcattt gttttaaata taatgattga atattcaatt
     1081 ttacatctgc gcctgatagt cctccgaatg tcaccaacct tccattaaca ccaacagaat
     1141 caaagctact ctgccatgct tcaataccta tagaatttaa aactacatct gccatctttc
     1201 cttgggtaat ttctttgact tgttctacta ctttaccgta atcgtttaaa atataatcag
     1261 caccaaaatc ctttacccac tcattcttag aaactgcaat gacctttgct cccattttct
     1321 ttgcaaattg aatcgccatc atccctgtat ttcctgatgc tccatataca agcaaggatt
     1381 cattgacttg gagtgaagcg tccttcaatg catgataaga tgtcaaagtg gttacgggta
     1441 aacttgctgc tagatcccaa ctcatatcat ctggtatctt gaagacattt ttctctggaa
     1501 ctgaaatata ctctgcaaat ccaccattag taactatgcc aattaatcca ccatttctac
     1561 acaacatgtc aagaccgtct aaacacatat cacaagttcc atcgaatact ttgttatgta
     1621 taactacttt atcgccttcc tttaaattgc cttctttaac atgatctccg agtttctcta
     1681 ttgttccact tatctctgct cctggtatgt gtggtagcgg ttttacttcc cttgcacctg
     1741 aaactgcaaa gtaatctatt ggatttacac caacggtcat aactcttatg agaacagcat
     1801 gatctgtaag ttttggtttc tctgcactat cttcaacttt tagattatct aaaccaggtt
     1861 tttcaaaaat gacagctttc attctctaaa gatatgctgc acaacattta actgttttag
     1921 gttatgcaaa caaaattgta ttacccaaca tttgtagtgc acttgacaaa aaatttggaa
     1981 gatagatttg taaaagaacc aacctcgtct ggtggaagac gaagttacag catacgattc
     2041 tttgattcaa aaggaggtct ttatcaatgc gtgctaattt cactaagttg tataatgata
     2101 atgggaatat ggcaaaggaa aagttgcaaa attcgatcaa atatatacaa aatagggaag
     2161 caaagaatta ctttcactta ggatgtatca gactaagcat tgatgatgca acaacattat
     2221 tgatctgcca tgacatttat ttctttccag acatatttaa ctctctagaa gtgacaatgc
     2281 catggtgctc ttaaatagtg taatgtgttt agttttcgct tgagaatctg actactattt
     2341 caaatgtagg tataatatag tacataggtt gaagatattt tgtatgaaac tatagaggta
     2401 ataagaattt ataacaaaaa agtaagaaat gctcgttatt acgggcttca tagttttgtt
     2461 acttttgtct ataatatcag aattaactac ttcaagttat aataccgtac ttattctaga
     2521 catatcagat ctcagatggt aatctcatac aaaaacatca atttaatgac cattaatatc
     2581 ttgatatcca ctaggacgtg gtgagttgtc agctccagga tatataaggt tatataatat
     2641 ccttcaactc attgactcct tccctgttct aatctagaag tgagtgtatt tttaagcttt
     2701 gcgccatgcg ctcaatgtct tggtttgtca cagatgggtg gacaggtaat gacagaacat
     2761 gttcactagc ccattctgtc ttag
//
LOCUS       DASQSJ010000414         3369 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_73798, whole genome shotgun sequence.
ACCESSION   DASQSJ010000414 DASQSJ010000000
VERSION     DASQSJ010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3369
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73798"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..462
                     /locus_tag="VE223_08110"
     CDS             <1..462
                     /locus_tag="VE223_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21593.1"
                     /translation="FGEGNDRYDIPKSEIQMTSKNVLIGLNLYEIAKKYKVRRDEPLP
                     TSRPIEEWSQGENIDLATYERKYPKGLFNKGVRVLNEDHVGHIMKETDDKIVIFGEYN
                     YRFDVPKSKIKEVGRNVILNMDINELAANYKVDRNAPLPTGEPLDKLAQEQ"
     gene            796..1218
                     /locus_tag="VE223_08115"
     CDS             796..1218
                     /locus_tag="VE223_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HZC21594.1"
                     /translation="MNSDSHSDSEVKSFYKLKNIAVVGMSKNEEKAAHYVPKYLIEHG
                     YNVIPVNPTITTEILGRKAYPTIADVPETIDIVDVFRRSEDVPAVIDDAIKKKGGIKL
                     IWMQVGVYNEEAEKKAKENGIDVVYNRCMMEEHKRLLG"
     gene            1259..1840
                     /locus_tag="VE223_08120"
     CDS             1259..1840
                     /locus_tag="VE223_08120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21595.1"
                     /translation="MNKYAKPQFNKVKLALISLAFGMMMIIFFTITNNIVYTQKGPLE
                     KSSNTTALSSPSSSHPKLHAVKITSPTKGQQVPTGKDLIIIGTSSDNATSFCQVLVIV
                     NGVKPYQPATGTGHGGATDYSKWNYVLTSKYTTIKPGPNNKITAKYVCMDKPSVSSFY
                     SVNLTGINVATSPDQSTKVNNNVTTTTQAANFR"
     gene            complement(2101..2754)
                     /locus_tag="VE223_08125"
     CDS             complement(2101..2754)
                     /locus_tag="VE223_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HZC21596.1"
                     /translation="MVNIYVKTLAKIASRYAPSRTPSFNLAHLLKTLQLMEKRGHVSR
                     PLLCRELSLGEGVVRTLLKHLKMKDLIETTNSGTRLTEKGITILSGLVSSIPSETSMP
                     KSSAALGKFNYAVLLRQFGFSIKSGIEQRDAAIKMGATGATTLLFENNKFLIPSTNNY
                     YDSLEKEPHTAKLLIEKLQPEDGDVIIIGSAVENVRIAELAAKNAALLTIVDQEARI"
BASE COUNT         1158 a          572 c          626 g         1013 t
ORIGIN      
        1 tttggtgaag gaaatgatag atatgacata ccaaaatcag aaattcagat gacgagtaag
       61 aatgtcttaa ttggtcttaa cctttatgaa attgcgaaaa aatacaaagt aagacgtgac
      121 gaaccattgc ctaccagcag accaatagaa gaatggagtc aaggtgaaaa catagacttg
      181 gcaacatatg agagaaaata tcccaaggga ttgtttaaca agggggtacg agtactaaat
      241 gaagaccatg taggtcacat tatgaaagaa acagatgata agatagtgat atttggtgag
      301 tataattaca gattcgatgt tcccaagtca aaaataaaag aagtaggcag aaatgtgatt
      361 ttgaatatgg atattaatga actagcagca aattataaag tagacagaaa tgcaccattg
      421 ccaacggggg agcccttaga taaattggct caagagcaat aggaagcctt gcttgaaaag
      481 tagactcttt aaaaggtata cttttattta tatgacatgg tgacctttca ccacctgcga
      541 caatacactc aaaatattag ctagaccatt ctctaaaaaa tggactagct gaattagtat
      601 agtactagtc ccgtacgata atgctaaacc atacaaaata atggttggcc atatatgtca
      661 agtccctaga tagctagatc tttactgcag agaagttaaa aaaacttaat ctagaacgat
      721 ctcgtcatat gcagcaaaaa taattgtgta gcacataatt gaataaatac aataagattt
      781 gatatagtta ttaatatgaa ctcagattca cattcggact ccgaagtcaa gtcattttat
      841 aagttgaaaa atattgcagt agtagggatg tcaaaaaatg aagaaaaggc tgcacattat
      901 gtacctaagt atcttatcga acatggatat aatgtcattc cagtaaaccc aacaataaca
      961 acagaaattc ttggtaggaa ggcatatcca actattgcag acgtgccaga aacgatagat
     1021 attgtagatg tatttagaag atcagaagat gtacctgctg taatagatga tgcaataaag
     1081 aaaaaaggtg gaatcaagct aatctggatg caagttggag tatacaatga agaagcagaa
     1141 aagaaagcaa aagagaatgg aatagatgtt gtatataata ggtgcatgat ggaagaacat
     1201 aaacgattgt tgggctaatt gtcatctcaa taagtttctc gctattggta ttattattat
     1261 gaataaatac gctaaacctc aattcaacaa ggttaaactg gcattaatat cgcttgcatt
     1321 tggaatgatg atgatcatct tctttaccat tactaataat attgtttata cgcaaaaagg
     1381 gcccttggaa aaatcttcaa acacaacagc attatcatca ccatcatcat cacatccaaa
     1441 actgcatgcg gtaaaaataa cctctcctac caaaggtcaa caagtaccaa ctggcaaaga
     1501 ccttataatt ataggcactt cctcagataa tgcaacatct ttttgccaag ttttggttat
     1561 tgtaaatggc gtaaagccgt accaaccagc aactggaaca ggccatggtg gagctacaga
     1621 ctattcgaag tggaactatg tgcttacatc taaatacact accataaaac caggaccaaa
     1681 taacaaaatt acagccaagt atgtttgtat ggacaaacct tctgtgtcgt ctttttacag
     1741 tgttaatcta actggaataa atgtagcgac ctcaccggat caatctacca aggtaaataa
     1801 taatgtaaca acaacaacac aagcagctaa ctttaggtag tgttttgcct atctggatgg
     1861 acacatagaa gaggcgatgg acggtgaaac tcttgatgat gtgtagtcaa ggcatcttta
     1921 tttcaatggt ttacaagaag atctaagatg aagaatagtt ggacgatcta ctcatacgtt
     1981 gcctattttc ccaactggct agtatgctcg tcgcagaaaa actatttgta tttactatgg
     2041 aaagagttgt tcaaatattg gatagcctta ccatcatggt attgtctagt caagtattaa
     2101 tcaaatacgt gcctcctggt ctactatagt taaaagtgcg gcattctttg cagcaagctc
     2161 tgctattctt acgttctcaa cagcacttcc tattatgata acatctccat cttcaggttg
     2221 taatttttca attagtagtt tggctgtgtg tggctctttt tcgagtgaat cataataatt
     2281 atttgtgcta ggtattagaa atttattgtt ctcaaataac aaagttgtgg cgcctgttgc
     2341 tcccattttt attgcagcat ctctttgctc tattcctgat ttgatagaaa atccaaattg
     2401 tctgagcaag accgcatagt tgaatttacc tagagccgcg gaggattttg gcatacttgt
     2461 ttctgatgga atcgaggaaa ctagtcctga aagaatcgtg attccttttt ctgtcaatct
     2521 tgtgccgcta tttgtagtct ctatcagatc cttcattttc aaatgtttta gcaatgttct
     2581 gacaactcct tcaccaagcg ataattctct acataataaa ggcctgctca cgtgtcctct
     2641 tttttccata agctgtaacg tcttgagaag gtgagctaaa ttaaaagaag gtgttctgct
     2701 tggagcatat cggcttgcaa ttttagctaa tgttttaaca taaatgttca ccatgacttc
     2761 gttttcactt cttcatggaa cttactatct ggaatacttc atttattcta tatcataaga
     2821 gaagtatcct cttagttaaa ctggttagtt agtgtaggat aaaccgaccc acactttata
     2881 taatacaatc tttcacaaca agaaaatgtc gattatagtc aaacaaatta aattgagact
     2941 ggcagtatat caaagatagt cgtaggagta ttaattgcaa ttttagcatt cgggatgttt
     3001 gtggtaggat atgatcaagg acaactagca caggccctat ttgctccaag gaattcatct
     3061 aagccataac caattaatga tgatacacga gttcaatcat gatctaagac atgccgcagg
     3121 atttccatgt cattaataat ttagatataa tgtaatatag tgactaggaa ggccattctt
     3181 ttactcgtat aatactagta aaatgaaact attgactttt attgctatat ctcttctttc
     3241 gggtacgatt gcaggtgctc ttcttggttt aataaatcaa ggtatagttg aaccatttat
     3301 tgaaagctat aggaattgaa acgcagaggg aattgaatgc tggtaaaatt gttgataata
     3361 ctcaacaat
//
LOCUS       DASQSJ010000415         2534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_395373, whole genome shotgun sequence.
ACCESSION   DASQSJ010000415 DASQSJ010000000
VERSION     DASQSJ010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_395373"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1096
                     /locus_tag="VE223_08130"
     CDS             <1..1096
                     /locus_tag="VE223_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HZC21597.1"
                     /translation="LVNQLFTSIPLGVGSKGTIKLSKSELDELLLEGVDWAIEQGYGW
                     KQDAEVCEEGGRMVGADPTSVSDMARKRGSPQLGSLGSGNHFLEVQKVNKIFDERAAK
                     AMGVDEEGQLTVLIHCGSRGFGHQVCSDYLRISEIALRKYGMKIADRELACVPNSSSE
                     GEDYRQAMYCALNFAWSNRQLITHWTRKTFQKVFGMSEQQLDMKLVYDVSHNIAKVER
                     HKVEGGEMRNLVVHRKGATRAFPLGMDQIPDKYRTIGQPVIIPGSMGTASWILLGNEK
                     SLDLSFGSTAHGAGRSMSRSAAKRSYTVEDVERGLESKGIYIKALTKEGVVEETPYAY
                     KDVDAVADVSHSLGIATKVVRLVPIGVIKG"
     gene            1096..1527
                     /locus_tag="VE223_08135"
     CDS             1096..1527
                     /locus_tag="VE223_08135"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HZC21598.1"
                     /translation="MSGEEDPDIAIIKARKMKALKEQAAAIERSRIKQQQEESTLQPK
                     KTDRQIVSDYLYNRGEEVLNLAESQFPIQTKSIIDGIVELIKMGEIKQRISGGELLAL
                     FRSVGINVRINTSIKIEDHGKLVSFSEKLKQGKEEKTDGQI"
     gene            1514..1876
                     /locus_tag="VE223_08140"
     CDS             1514..1876
                     /locus_tag="VE223_08140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21599.1"
                     /translation="MARYNKNGSYIGTIILDFQTTSFESDSKIAIEILLEYQKLCNFS
                     NDYDTFALDNPVSSAGWSFAKLFLSGQFVEKLYEINSGEIGGSRGKKFEDKFVSWLST
                     KLRNSNCEAQLKIAREMK"
     gene            2103..>2534
                     /locus_tag="VE223_08145"
     CDS             2103..>2534
                     /locus_tag="VE223_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21600.1"
                     /translation="MSDWDLLTPGIGLTSIGIVGVGLSLAGIAKTFLEGMHAVSLLTM
                     FIGVIFLASGLFKDGFPSTGRAKSATFITLGFLVTFGVAAAVTVSAQAPSIFAYIGLM
                     MIISVPAAVLTVASYKRTPYIKALAVIFIGGAIVGGASFYIF"
BASE COUNT          825 a          417 c          586 g          706 t
ORIGIN      
        1 tcttgtgaat caattgttta catctattcc tttgggagtt ggtagcaaag gaaccattaa
       61 actaagtaaa tcagagcttg atgaattact tttagaaggt gtagattggg ctattgagca
      121 gggctatggt tggaaacaag atgcagaagt ctgtgaagaa ggtggaagaa tggttggagc
      181 tgatcctaca agtgtttcag atatggcaag gaagcgcggc tcccctcaat tgggtagcct
      241 gggttccggc aatcattttc ttgaggtaca gaaagttaac aaaatcttcg atgaaagagc
      301 cgcaaaagct atgggcgtag atgaggaagg acagctgaca gttttaatcc actgtggatc
      361 aaggggattc gggcatcagg tatgcagcga ttatttgcgt atttcagaaa ttgctttacg
      421 gaaatacggc atgaaaattg cggacagaga gctagcatgc gtaccgaata gttcttctga
      481 aggcgaagat tatcgtcagg caatgtattg tgctttgaat tttgcgtggt ctaacagaca
      541 gctgataaca cactggacaa ggaaaacgtt tcaaaaagta tttggaatgt cagaacaaca
      601 actagacatg aaacttgttt atgatgtatc ccataatatt gctaaggtag aacgtcataa
      661 agtcgaaggt ggagaaatgc gtaatctagt tgttcacaga aaaggagcta ctagagcgtt
      721 tcccctaggt atggatcaaa ttccggataa atatcgcact atcggtcaac cagtaatcat
      781 accaggatct atgggaaccg caagttggat cctattaggc aatgaaaaat ctctcgattt
      841 gagtttcgga tctactgctc acggtgcagg cagatcaatg tcaagatcag ccgcgaagcg
      901 gagctatact gtcgaagatg tcgagagggg actagaatca aaaggcatct atattaaggc
      961 attaacaaag gaaggagtgg tagaagagac accttatgca tacaaggatg tagatgcagt
     1021 cgcggatgtt tcccattcac ttggaatagc aaccaaagtg gtaagactgg ttccgattgg
     1081 ggtgataaag ggataatgtc aggggaagaa gatccggata ttgcaattat caaagctcga
     1141 aaaatgaagg cactcaagga acaggcagca gcaattgaaa ggtcaagaat aaaacaacaa
     1201 caggaagaat caactctgca accaaaaaaa accgatagac aaattgtatc tgactactta
     1261 tacaacagag gagaagaggt tctaaacctt gcagaatcac agttcccaat ccagacaaaa
     1321 tcaataatcg atggaatcgt agaattaatt aaaatgggtg aaattaaaca aagaatatcg
     1381 gggggcgagt tattggcttt attccgatca gtcggcataa acgttagaat caacacaagc
     1441 atcaaaatag aagatcatgg caagttggtt tcattctcag aaaaactgaa gcaaggaaag
     1501 gaagaaaaaa cggatggcca gatataataa gaatggcagt tatataggaa ccattatact
     1561 ggattttcag actactagtt ttgaatcaga ttccaaaatt gcaatagaga ttctccttga
     1621 ataccaaaaa ttatgtaatt tttctaatga ttatgatact ttcgctttag ataatccagt
     1681 ttcgagtgcc ggatggtcat ttgctaagtt atttctttcc ggacagtttg tcgaaaaact
     1741 ttatgagata aattccggtg aaattggtgg ttcacggggc aaaaaatttg aagacaagtt
     1801 tgtttcgtgg ttaagcacaa agttaaggaa tagtaactgc gaagcacaat taaagatcgc
     1861 cagggaaatg aaataaaaaa gatgtgatgg catcaccgcg ataatatttg caagctatgt
     1921 cggggtttga atgcttggta catatttttg gctgttttgt atcttagtat cttcaacgat
     1981 aataaatggg ttggtatctc gatttttata ttggccgaca aaattctcag atcaaataga
     2041 tcaaatacaa aactagaaaa gattaattat gtcaaaattc ttccaagagc tgttaggaac
     2101 atatgtctga ctgggatttg ctcacacctg ggataggtct cacttcgatt ggaattgttg
     2161 gtgtcggact ttcacttgct ggcatagcaa agactttttt ggaaggaatg catgcagttt
     2221 cacttttaac aatgtttatt ggtgtgattt tccttgcatc tggtttattt aaagatggtt
     2281 ttccgtcaac ggggcgagca aagtctgcta ccttcattac actgggtttt cttgtaacct
     2341 ttggagtcgc cgctgctgta acagtaagcg cgcaagctcc aagtatcttt gcatacattg
     2401 gattaatgat gataatttca gttccagctg cagttttaac cgttgcatcc tataaaagga
     2461 ctccatatat caaagcactt gcagttattt ttatcggagg cgcaatagta ggcggtgcta
     2521 gtttttatat attt
//
LOCUS       DASQSJ010000416         2214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_311339, whole genome shotgun sequence.
ACCESSION   DASQSJ010000416 DASQSJ010000000
VERSION     DASQSJ010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311339"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..1109)
                     /locus_tag="VE223_08150"
     CDS             complement(303..1109)
                     /locus_tag="VE223_08150"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HZC21601.1"
                     /translation="MQEKRNYNSNNNERRVAVITGSSKGIGKAIAMEFANAGYSVIIN
                     AKNKEELKQAAEDISNSVKDRERIMPIPGDISQEPVCISLIESAIKQFGRIDVLVNNA
                     GIGGESKKIHELTEKDWDEVIDVNLKGAFLCTREAVKNMMKKRGSNNNNYSIINISSV
                     HEQTPHPESAPYSASKGGMQMLTKTIALELADKGIRVNGIAPGAIATDMNKELLENQE
                     KKEKKEQGIPVHRIGQPEEIAKVALFLASEDASYVAGTTIYVDGGLTLVS"
     gene            complement(1721..2068)
                     /locus_tag="VE223_08155"
     CDS             complement(1721..2068)
                     /locus_tag="VE223_08155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21602.1"
                     /translation="MSIFERERTSAEVVMYALYLYFLGLSFRNTSKAIQPFGEEGRSH
                     VDIWKWVQRFNPKLLYRCKRISAFLIDETMLQIGTDEAWLWVAVVEPIHKQLLVFTSQ
                     DTGMKLQRHFLIH"
BASE COUNT          656 a          465 c          338 g          755 t
ORIGIN      
        1 cagataacat acctaaataa aataagcttt aacaaaagaa acgaaatagc atctttgcag
       61 attggactcc aagagttaga aggctatatt catggacttg agaatcataa ccaaaaacaa
      121 caacatgaaa ttcaaaatga atagatgatt tcttgactat gtggataaga caattgttgc
      181 agcagtaaaa gaaaatgaag ataataacta ttatcttatg atatacacat atctgctact
      241 atccgcgttc tactcaactt tctgtattcc ccttcgtaag atcacataaa atgtacatga
      301 tcctatgata ctaaagttag ccctccatca acgtagattg ttgttcctgc tacatagctt
      361 gcatcctctg atgctaaaaa caaagccact ttcgctattt cctctggctg tcctattcta
      421 tgtactggaa ttccttgttc ctttttctct ttcttttctt gattctcaag gagttccttg
      481 ttcatatcag ttgctatagc tcctggtgcg ataccattga ctcgtattcc tttgtctgct
      541 aactctaaag caatagtttt agttaacatc tgcatccctc ccttggaagc agaataagga
      601 gctgattcag gatgaggcgt ctgttcatgt accgaagaaa tattgataat tgaataattg
      661 ttgttattac tacctctctt tttcatcatg ttttttactg cttctctagt acacaaaaat
      721 gcacccttca agtttacatc aattacttca tcccaatctt tttctgtcag ctcatgtatt
      781 ttctttgatt ctccacctat tccagcattg ttaactagaa catcaatcct tccaaactgt
      841 ttgatagcac tctctataag agatatacaa acaggctcct gtgatatatc tcctggtatt
      901 ggcataatcc tttcgcgatc tttgacagaa tttgaaatat cttcagcagc ttgcttcagc
      961 tcttctttgt ttttagcgtt aattatgaca gaatatcctg cattagcaaa ttccatggct
     1021 atcgcttttc caataccttt actagagcct gtaattactg ctactcttct ttcattatta
     1081 ttactattgt agtttctttt ttcttgcatg ttatttttac tgtaggataa agctcagcat
     1141 agttaattag ccttcaacaa gtcttccaca agacgattgg aacgggccat ttagtcgagc
     1201 aataggtcaa cacagatctc ttatctttgt tgttctcata tctattattt gatctaaaca
     1261 ctattctttt tctgggctaa ccattcgcca tcgctattgt tgacattgat actgcagcgt
     1321 caagtagcag gagtagtaga gcggtatact aattacctgt ccgccagagg ctaagaaaag
     1381 accatttcta aatccgcagc agcataagct gtatactgac tacgtgcttc agataacttg
     1441 cgttgttgtg atgacagact cagtacgata tgacataaag ctattttagc caaatatgcc
     1501 tgccacaact aactagtttc atttgcattg atagaagcta atcatgcttc aatgtatcga
     1561 gattcaacat ctaccagatt ctacgagtct cccttcctct gatactagta ctctaatcct
     1621 ttttaatgac ctaattattg ctaggataga tagttccctc tcattagcag aaagcaacca
     1681 ttaagatgaa atgttagcat agatttacca taaattctta ttaatgaatt aagaaatgcc
     1741 tctgcaactt cattcctgtg tcttgagatg taaacacaag aagttgctta tgaattggtt
     1801 ctacaacagc aacccatagc catgcttcgt cagtgccaat ctgtaacata gtctcatcaa
     1861 ttagaaaagc agatattctt ttacaacggt aaaggagttt cggattgaac ctctgaaccc
     1921 atttccatat atctacatga ctccttcctt cttctccaaa tggctgaatc gccttagagg
     1981 tatttctgaa acttaagcct agaaaatata agtataatgc atacattact acttctgcgg
     2041 atgttctctc acgttcaaat atgctcatag attatgagag gatgttcgca gctatagctt
     2101 catagttaag ttaacaggac ccaatatctt atcataactc atatattttg tactaacgtc
     2161 tttctgacac caatgactat aaatcaatac ttgcaattat tgctgttata gcgg
//
LOCUS       DASQSJ010000417         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_429066, whole genome shotgun sequence.
ACCESSION   DASQSJ010000417 DASQSJ010000000
VERSION     DASQSJ010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429066"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..879
                     /locus_tag="VE223_08160"
     CDS             280..879
                     /locus_tag="VE223_08160"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HZC21603.1"
                     /translation="MNKHNDIHALLVAIALTVVLIAGPAIAYFISPDNAKAAQFEIDK
                     SQFKKAPEFTGITGYLNTPAPIKLADLKGKVVLVHFWTYTCSNCIHTIPYLNEWYQKY
                     SNKGLVIVGVQAPEFNDEKNIDNVKAAVQNFQIKYPIILDNNYVNWNAYGNSYWPRDY
                     LVHNQGLIRYSHIGEGDYTQTEQMIQSLLTEGVTTKSRG"
     gene            1126..1476
                     /locus_tag="VE223_08165"
     CDS             1126..1476
                     /locus_tag="VE223_08165"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HZC21604.1"
                     /translation="MALYGIYGEHTQEACPLYNKESRQSVLTGSQNMEKNAQKYGVKI
                     LHQFHSGLEHTFLWVVDADNAHLIQDLMTRTVGRFNTIKIVPLITFQQVIASCKKIED
                     GSFFPSESTATAPQ"
     gene            complement(1559..2167)
                     /locus_tag="VE223_08170"
     CDS             complement(1559..2167)
                     /locus_tag="VE223_08170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21605.1"
                     /translation="MKNVNIKQQFKNVISFFAIVGLLSMTSIVVLPIGKSHAITSSLP
                     AVPSSINTTTSLGIAASPFYESNVSKLIGQRVVSTANGITPQIETTYVKNGTIKGVGN
                     VRDLHTWTNTAPVPPATSRFPGMNHDVGQGVITTADGQDMATWIGYGIGRSNINGTIT
                     YHDIILFNTNSTGRLAFLKNLEGLSIASENGNKIIQKIYEWK"
BASE COUNT          773 a          394 c          434 g          713 t
ORIGIN      
        1 cacagggtaa ataataagaa agaaaaactt cctgatgact tggaagtcag tattaaagat
       61 gcaaaattcg ctgtctgtaa atgcagatgt atggtatact gaatttggga gaaatctgga
      121 aatatcaatt aacgaattat gctctcgtat ggacagaatg atggatggat agaattggta
      181 gtaatttgga aaaagtatta ataaaaagtt actaaaaaca tgtacatgta tggtaacacc
      241 aacaaatgta ggttcttata aaagcaggga ggattttgga tgaacaaaca taacgatata
      301 catgctttac tagtagcaat tgcactaact gttgttctga ttgcaggtcc agcgatagca
      361 tatttcatca gccctgataa tgctaaagca gcacagtttg agattgataa atctcaattt
      421 aagaaagcac cggaatttac tggcattact ggttacttaa acacacctgc cccaatcaag
      481 ctagctgacc tgaaaggaaa ggtagtactt gttcattttt ggacatatac atgtagtaac
      541 tgtatacaca ccatccctta tctgaatgaa tggtatcaaa aatattctaa caaaggttta
      601 gtcattgttg gtgttcaggc acctgaattt aacgatgaga aaaatatcga taatgtaaaa
      661 gcagcggttc agaactttca aataaaatat ccaataattt tagataacaa ttatgtaaat
      721 tggaatgcat atggcaacag ttactggcca agagattatc tggttcataa ccagggattg
      781 atacgctata gccatatcgg cgaaggtgat tatactcaaa ctgagcaaat gattcagtcg
      841 ctactgactg agggtgtaac taccaaaagt aggggataaa attacggtca ttaaatgaaa
      901 agactcacta taaaagctga tgatacacca gcttggatga aggtccatgc actgtgtagc
      961 gtagaagata ggtatagaat atctgtccag atgaaatagg taagcacttg ctatcatatc
     1021 atcaacctaa catcaatgag aaacgtactc acaacaggta actagaggga tcaggtaaga
     1081 cgagaaccac taagtacatc tgtatgtata tgtactaaag atattatggc cttatatgga
     1141 atctatggag aacatacaca ggaagcatgt ccactctaca ataaagagag tagacagtcg
     1201 gtcctgactg ggagtcaaaa tatggagaaa aacgcacaaa agtatggagt gaaaatatta
     1261 catcagtttc actctggact ggaacacaca tttctttggg ttgtggacgc agataatgca
     1321 catttaatac aagatctcat gactagaact gtaggaagat ttaacacgat aaagatagta
     1381 ccattgataa cttttcaaca agtaatagcg agttgcaaga aaatagaaga tggaagcttc
     1441 ttcccctcag aatctactgc tactgctcct caataggttg gagaaatata ataatacacc
     1501 ttcttctttt ttcttcattg ttcttcttct ttacaaaaca ggaaacagta ttgtattatt
     1561 acttccactc atatatcttt tgtattatct tattaccgtt ttcagaggct atcgatagtc
     1621 cttcaaggtt tttaaggaaa gcaagtcttc ctgtagaatt ggtattaaat aatataatat
     1681 cgtgatatgt tattgtccca ttaatgttag atcttccaat accgtatcca atccaagttg
     1741 ccatatcctg tccatctgct gtagttatta caccttggcc aacatcatga ttcattccag
     1801 gaaatctaga agtagccggg gggactgggg ctgtattagt ccatgtatga agatctctaa
     1861 catttccaac ccccttaata gttccatttt ttacataagt agtttctatc tgtggagtga
     1921 tgccatttgc agtgctgact actctttggc ctatcagttt actaacattt gactcataaa
     1981 aaggactggc tgctattcct aaactggttg ttgtattaat actacttggt accgctggta
     2041 atgacgacgt gattgcatgc gattttccta taggtaatac tacaatgctt gtcatggaca
     2101 atagtcctac tatagcaaag aatgagatta catttttaaa ctgttgtttt atattgacat
     2161 ttttcattaa taaaggagta ctacatcttt tcatttaaat tattctttgt gtatcattaa
     2221 gggtattgtt gttgctgcag ggctagcgtc atgtcctttc taggtgcgaa ttagattcca
     2281 aactttataa caaaattata acactttctt tcct
//
LOCUS       DASQSJ010000418         2439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_74867, whole genome shotgun sequence.
ACCESSION   DASQSJ010000418 DASQSJ010000000
VERSION     DASQSJ010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74867"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..695)
                     /gene="nadC"
                     /locus_tag="VE223_08175"
     CDS             complement(<1..695)
                     /gene="nadC"
                     /locus_tag="VE223_08175"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HZC21606.1"
                     /translation="MKNLQMYLKVRESLTSFLREDVETGDITSNSIISPNIYARAQII
                     CKTKKTAMVCGLEEASMVFDICDCRTETLVKDGVMVKNKDVVMDVTGRALSILKAERT
                     ALNLIMRMSGIATETRKFIESLGIYKDSVRIACTRKTAPGLRFFDKKAVSVGGGDTHR
                     MALDDMILIKDNHLLFSESVEKSVKLARRNTGSSVRVECEATTLDDVITAINAGAEII
                     MLDNFSPPEVIRT"
     gene            complement(710..898)
                     /gene="spt4"
                     /locus_tag="VE223_08180"
     CDS             complement(710..898)
                     /gene="spt4"
                     /locus_tag="VE223_08180"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HZC21607.1"
                     /translation="MTREVACKKCKAVTIGKVCPICKATDLTPDWSGTIIIFDALKSQ
                     IAATLDISIPHKYALKVS"
     gene            complement(899..1495)
                     /locus_tag="VE223_08185"
     CDS             complement(899..1495)
                     /locus_tag="VE223_08185"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HZC21608.1"
                     /translation="MFARAYMSDVVRIPPNRLTNSLKDTAIGILKEKYESMISPELGY
                     VVMIIDATANAVGKLVAGDGATYHKVTFEALTFYPKLQEVVEGEVVEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDVKQGIIVANQSAKSLKIGSRIRARVTAVSLGKGAAMGKI
                     GITCRQPFLGASEWIEQEIKKAKQPPTAAATKKGGGSK"
     gene            complement(1546..2118)
                     /locus_tag="VE223_08190"
     CDS             complement(1546..2118)
                     /locus_tag="VE223_08190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21609.1"
                     /translation="MAPNLTGDARSATVTRSFRFESGLSKILDEEAERMGISVNALVG
                     IILKRYSEFTRYLSKIDMIVVNRELLISLLESSEEDYLYELGAKLGKTVPVDTIMFWK
                     KDLSEESVLEYIEKIICRYGYLGTYDEVSQSSSRTIVIRHRLGRNGSKFFEGYLSSAL
                     KNTLGRDAIFEVTDSSVKFEIKNMANNPQQ"
     gene            2272..>2439
                     /locus_tag="VE223_08195"
     CDS             2272..>2439
                     /locus_tag="VE223_08195"
                     /inference="COORDINATES: protein motif:HMM:NF019876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HZC21610.1"
                     /translation="MKQEPATSFKVENEVCGLCDSRALVFDAETSETVCSSCGMVVRD
                     NNESLGPEWRIY"
BASE COUNT          695 a          555 c          403 g          786 t
ORIGIN      
        1 attgttctaa ttacctccgg tggagaaaag ttatcgagca ttataatttc agcaccagca
       61 tttatcgctg taattacatc atccaatgta gtcgcctcac attccactct cacagacgag
      121 ccagtatttc gtcttgcgag tttaacagat ttttccacag attcagaaaa caatagatga
      181 ttatccttta tcaaaatcat gtcatccaga gccattcgat gagtatctcc accacctacc
      241 gatactgcct tcttatcgaa gaaccgcaat cctggcgcag tcttacgtgt acatgcaatt
      301 ctaacagaat ccttataaat acctaaggac tcgatgaact ttctggtttc ggttgcgatg
      361 ccgctcattc tcattattaa gttgagcgca gttctttctg cctttaaaat agataatgct
      421 cttccggtta catccatcac tacatctttg ttttttacca tcacaccatc cttgactaac
      481 gtctcggtcc tgcaatcaca aatgtcaaaa accatactgg cctcttcgag accgcaaacc
      541 attgccgtct ttttagtttt gcatataatt tgggctcgag cataaatatt aggtgaaata
      601 atgctgttgc ttgttatgtc cccagtttca acatcttccc tcagaaaact tgtcagtgat
      661 tctcgaacct ttagatacat ctgcaaattt ttcatttcct aggcaacttc tatgaaacct
      721 tgagagcgta cttatgagga attgaaatgt caagagtagc ggcgatttga gattttaaag
      781 catcaaaaat gatgatagtt ccagaccagt ctggagtgag atctgttgct ttacaaatag
      841 gacaaacttt tccaatagta acagctttgc actttttaca ggcgacctct ctagtcacct
      901 acttgctgcc acctcctttc tttgtcgctg cggctgttgg cggctgtttt gccttcttta
      961 tttcctgctc tatccattcg cttgctccaa gaaatggttg tctgcatgtt atgccaattt
     1021 ttcccattgc agctccctta ccaagactta cggctgtcac tctagcacgt attctcgaac
     1081 ctatcttgag cgactttgca ctttgattag cgacaattat cccctgtttt acgtcacttt
     1141 ttagataatc atccgttatt tgggacaaat ggagcagagc atcagtcggc ccaatcctaa
     1201 caaaagctcc aaagtcagta atttctacaa cttcaccttc gactacttct tggagttttg
     1261 gataaaatgt caatgcctca aaagtaactt tgtggtaagt tgccccatca cctgcaacca
     1321 actttccaac agcattcgca gtcgcatcta taatcattac tacataaccg agctctggac
     1381 tgatcatgct ttcatacttt tcctttaaaa ttccaatagc agtgtctttc agagagtttg
     1441 tgagtctatt aggaggaatc ctcaccacat cactcatgta tgctctggca aacatttttt
     1501 gaacgcattg ataacctaat atcaatttat gaacctttgg ataatctatt gttgaggatt
     1561 attagccata ttctttattt caaatttaac cgaagagtct gtcacttcaa atatggcatc
     1621 tctcccaaga gtgtttttca gagcagagct aaggtatcct tcgaagaatt ttgatccatt
     1681 tctccctaac cgatgtctta ttacaatagt tcgactgcta gattgagaca cttcatcgta
     1741 ggtaccaaga taaccatacc tgcagataat tttttctata tattctaata cagattcttc
     1801 agatagatcc ttcttccaga acatgattgt atcaactggt actgtcttcc ctaattttgc
     1861 acccaactca tagagataat cctcctcgct ggattcaagc aaagaaatca ataactctct
     1921 gttaacaaca atcatatcta tcttcgataa atacctagta aactcactat accttttcag
     1981 aatgatgccg accaatgcgt ttacagaaat acccattctt tctgcctcct catctaaaat
     2041 ttttgataaa ccactttcaa atctaaagga cctagttaca gttgctgaac gcgcatcccc
     2101 ggttagattt ggtgccatat taacacaaag taattatttt aggttcactg taataaagag
     2161 cttgtgaacg catcatatgt gttcaataca atgaaataaa tacattcaat gcatctgtaa
     2221 acatgttccc tatattgact acaaatcttt tattgacgag aataagaatt gatgaaacaa
     2281 gaaccagcga cttcgttcaa ggttgaaaat gaggtatgcg gactttgcga tagcagggct
     2341 ttagtcttcg acgcagaaac tagcgaaaca gtctgtagtt cgtgtggaat ggttgttcgt
     2401 gacaacaacg agtctttggg acccgaatgg agaatttat
//
LOCUS       DASQSJ010000419         2470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_429385, whole genome shotgun sequence.
ACCESSION   DASQSJ010000419 DASQSJ010000000
VERSION     DASQSJ010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_429385"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VE223_08200"
     CDS             complement(<1..306)
                     /locus_tag="VE223_08200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21611.1"
                     /translation="MPFREEELKKAYLIYRQFKDNNPLPYHERYIFPFFAGSYFAYRK
                     IDVLRIVEIARSISNKPTYVDVGCGYGDFLKKIREFIPDAIGIEKEISIFYIFQKPRP
                     "
     gene            979..1203
                     /locus_tag="VE223_08205"
     CDS             979..1203
                     /locus_tag="VE223_08205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21612.1"
                     /translation="MVRKFEDWWKTVPEDLRNKTRKGDEGNKPLLNQVNYVLLHLHLA
                     GKHDAKPSHEELKDWLHSGQVDVLRMTAKK"
     gene            1386..1679
                     /locus_tag="VE223_08210"
     CDS             1386..1679
                     /locus_tag="VE223_08210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HZC21613.1"
                     /translation="MPIAIIPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFIFYPERCISDGACIGVCPTHAIFWMRPMEYTSGQPVPLHKNGVFDKGWEEG"
     gene            complement(2072..2396)
                     /gene="ffs"
                     /locus_tag="VE223_08215"
     ncRNA           complement(2072..2396)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VE223_08215"
                     /product="signal recognition particle sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01857"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal-type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01857"
BASE COUNT          804 a          452 c          456 g          758 t
ORIGIN      
        1 aggtctaggt ttttgaaaaa tgtagaagat agatatttcc ttttcaatac caattgcatc
       61 tggaataaat tctcttatct tttttaaaaa atctccgtag ccacaaccta cgtctacata
      121 agtaggttta ttggagattg accttgcaat ttccactatc ctcaagacat caattttacg
      181 ataagcaaaa tatgatcctg cgaaaaatgg aaaaatataa cgctcatgat agggtaaagg
      241 gttattatcc ttaaattgcc ggtatattag ataagctttt tttaattctt cctctctaaa
      301 tggcatctag tcacaatatt tttcatattg aatctattat attttcgctg agagtataaa
      361 aaaagaaatg taaccaaaac aggtaaatgc atatttacat agtatccaga agtttacaac
      421 tcgcttggac taactaaaac ataagatact ccattcatca tttgaaaaaa accataatct
      481 aaagagctat agatattaca ttactgatag atcggaggtt ttgatgattg actattataa
      541 tacatgtaga tacaaattat aatttgtaca aatcagagcc taaactgagc atcttgaagt
      601 tctggcaatg ggaggaaaag tgcattaact tgacagggac cgaaatatgc tcttaccttg
      661 tacttgacca agaacgctct gaacctaatc ctatctgttt ccatctgaag atataatata
      721 cacacgtaga catttactgg cctgctgcca atcgtatgta ctcgctctac attaagaatg
      781 acctagaaat atctgctctt ttatatgcgg tatgaactta gctatgagat tactcgtttc
      841 aattatacat atcgttgtat gctgcaaatt tatagcgatt acaaacatca atcgaatagt
      901 cccattatca atagacatgt agatttcttt cttgtaatat cccaaaaggc ttattaagtt
      961 cgattataac ttcgtcttat ggttaggaaa ttcgaagatt ggtggaagac tgttcctgaa
     1021 gatcttagga ataaaacccg taaaggtgat gaaggaaaca agccgttgct aaaccaggtt
     1081 aactatgtcc ttttacatct ccatttagct ggcaagcatg acgctaagcc aagccatgaa
     1141 gagctaaaag attggcttca cagcggtcaa gttgatgttc ttagaatgac cgccaagaaa
     1201 taaaaagaac attcctagta ttatcaagaa cattcatttc tttttgtcat taatcttctc
     1261 ttccatcctt tgactgatcc attatattct gaaaatatta tcattagccc attattataa
     1321 cagtgttttg tgattggcgc agggtttaaa tagtttcgaa catatgcacc tttagtgaat
     1381 agtatatgcc aattgctata attccagacg ttgatgagca aagatgtatt ggctgtgcac
     1441 tctgtgtaga gatttgcact gctcttggtc cggatgtact tagagtgaaa ccagtagaag
     1501 gatggaagag aggtaaagca tttatctttt acccagaaag gtgtatctca gatggcgcat
     1561 gtataggcgt atgtccaacg catgcaatat tctggatgag accaatggaa tatacctcgg
     1621 gacagcctgt tccattacac aagaacggtg tatttgataa gggctgggaa gagggataat
     1681 ctaaaaatag aacagaaaat agaatcaact ctccttttac atttttatga ttttttataa
     1741 accggctgtt actgtgctaa aattattaag gaattggtca gtagccagtc aatacatact
     1801 tgctagtaac atgtaactca atgatgtaaa gcaataaaac aaggaaccaa aattaaaata
     1861 aggagtgaac agttctttac atcggaagca cataagagac aaaggagttg ccaatatatc
     1921 ttttgttaag tatatctatg ccctgtattg cattaagatc taatagatgc acaggattca
     1981 tgattagttt ggttagtgca aattatcgca gcgcttatga tgtaaatgca ggaaaggact
     2041 tacgcacgaa aagtcagttg tataatataa gaggcagcct gccagtacca ccatagatac
     2101 aaggtcccat ctcgaggctt acaagatcta ccacgtagac gtgctagcat ggctacgccg
     2161 ccttaggatt gctccctccc ggacctcatc catttcgacg attcacagtc catacagtgc
     2221 cttcgcactg tcagctgttc ataaccatcc ggcacggcgt gatatcattt cagcaagcca
     2281 agcaggtatc ttacatatat ggatttatct ggcagttact gatcccagca tcaagccgat
     2341 ttctggtgtg tattggaata catagggtac ggctaagacc cagatcctcc ctgcctctga
     2401 tgatatagta ttggcaattt tcaaatataa tatttttggg taaatttagc ttaaggacta
     2461 ctattagagg
//
LOCUS       DASQSJ010000420         2049 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_397089, whole genome shotgun sequence.
ACCESSION   DASQSJ010000420 DASQSJ010000000
VERSION     DASQSJ010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397089"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(780..1463)
                     /locus_tag="VE223_08220"
     CDS             complement(780..1463)
                     /locus_tag="VE223_08220"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HZC21614.1"
                     /translation="MTLDLRDRFLLYLNSALAMENAALERVQRRGEQTILEDVKQQLQ
                     RHIQETKNHQNRLRLIISNMGGGDITPTQEKGQLPIAVPPQSIMDKIHTSRTSAAERE
                     LMQSVEDIIVENAEVIGYNLLIQMAEKMNIGDAIPYLRQSLDEEERMFGWLRANSPAM
                     FAKLWPDIDQSSSYSSSQGHSSSQIKTATTTTKNIDDIDQTFRCESCNNVFKSREDLR
                     THSMQQHER"
     gene            1800..>2049
                     /locus_tag="VE223_08225"
     CDS             1800..>2049
                     /locus_tag="VE223_08225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21615.1"
                     /translation="MTNKKKNKMTIRGKTKSVSSSISRAAKIGMILIMLIISMKSYLF
                     GIASAQDLNPPTTGRTSPNLTSTFGPNTPGTAGSGNDTQ"
BASE COUNT          605 a          380 c          383 g          681 t
ORIGIN      
        1 ggcaaattta tattggcatt gataacagtt tgtgcttaat tatggaaaaa ttttcaaatt
       61 tgctgcttac atcgttacac attaccagtg aatattatat aaatgagttc aaaatttaca
      121 attcagtcta ataatttaga atggtacttt ttagtatgag tagtacgtgt atgtagtata
      181 caagcgtggg taatttatta ccaattgatc agcacgtagg aggacaaaat agatcaaggg
      241 aaacgtccga gggtaaaaac cacttacaag tatgcctgaa aactgtttcc gtccacagct
      301 attcacagct gcctgaattg aggcatgatt tttgcaggaa agaacctgtt attctaatcg
      361 caagaattac gccaatattt acaaaaaata tggaagaggg aactaggcta gtgaatgaac
      421 tttactccgc agctaccgag aagaactact ctgtttttcg ccttggtgag gaaagaatta
      481 ttgtcgttcc accaaacgta caagtaagag agccactgtg gtaagaaggt gttatgacag
      541 aataaaaaaa ctaataataa gaaataaatg attataattg tgattgtgat ctataagtag
      601 ttcatttgat acctgtttgg atccgaccct ctgctgccag aattactgtt agcgtgtggc
      661 caattgattg acaaaatgtc cggcttaaca actgcttgtt ttaaggattg catcggaatt
      721 ttcggttttt ctctgaattg ctcgtaccca ttgtatattt ctagtcatct atctctgttc
      781 tatctttcgt gttgctgcat actgtgagta cgtagatcct ctctagactt gaatacatta
      841 ttacagcttt cacatctaaa agtctgatcg atatcatcta tattttttgt tgttgtagta
      901 gcagttttga tttgggatga tgaatgtccc tgtgaggaag aatacgatga tgattgatct
      961 atgtcaggcc ataattttgc aaacatggca ggagagttag ctctgagcca cccgaacatt
     1021 ctttcctctt cgtctaggct ttgtcttaaa taaggtattg catctccaat attcattttc
     1081 tcagccattt ggatgagcaa gttgtatcca attacctcgg cattctccac tattatgtcc
     1141 tcgactgatt gcatgagctc tcgctctgca gctgaggtcc tagatgtatg tattttatcc
     1201 atgatggact gagggggtac tgcaattggt agttgtccct tttcttgagt tggtgttata
     1261 tcacctcctc ccatattact tattatcagt cttaatctat tctgatgatt ctttgtttcc
     1321 tggatgtgac gttgcaattg ttgttttaca tcttccaata ttgtttgttc tcctcttctt
     1381 tggacccttt caagggccgc attttccata gctaatgcag agttcaaata caaaaggaat
     1441 ctatcacgta gatcgagtgt cattttacct gatatatgta ggcgattatt tgctataaca
     1501 gttgaggttt tgcaatcata tcaacaattg ttattgttac cctaataatt gatatgccgg
     1561 attcaatata tatttgggca gttttctttt gcttgataga acaagattaa ttatgcaata
     1621 caaaccaagg aaactccgct taatgatatt gcatacatat gcgtagcttc cctcgctcgg
     1681 cgtgtgaaag actatgggtt ccagtaaatc ttagttcatt gtgcccaata ctatgaaatt
     1741 gataatcatt gattatgacc tgcatttata tcctagagct gcttagatac caaattatat
     1801 tgactaataa gaaaaaaaat aaaatgacaa tacgcggaaa aacaaaatca gtgtcatcat
     1861 ccatttcacg ggccgcgaaa atagggatga tcctaataat gctaataata tcaatgaagt
     1921 cttatctttt tggcatagcc tctgctcaag atttaaaccc accaacgaca ggcagaacct
     1981 cccctaatct tacttctact tttggtccaa atacaccagg cacagcaggc agcggcaatg
     2041 atactcaga
//
LOCUS       DASQSJ010000421         2109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_397607, whole genome shotgun sequence.
ACCESSION   DASQSJ010000421 DASQSJ010000000
VERSION     DASQSJ010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397607"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..680
                     /locus_tag="VE223_08230"
     CDS             105..680
                     /locus_tag="VE223_08230"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK2/MTQ2 family protein methyltransferase"
                     /protein_id="HZC21616.1"
                     /translation="MVIKQLYITIDLIVGKKLYLPSEDSFQLARSVKCYRGKSALEIG
                     VGSGIVLNALRENFKIVAGTDIDFASLIYCKENLSKEIMVACCDAASAFHYRFDLIVS
                     NPPYIPIEDNEEKDSAINGDSDGIETTLHFLKSAISVLDQDGKILIIILSLSDNRRLD
                     ALIVEMKLKRRTVMERNLFFETLRTLEISFK"
     gene            complement(691..1716)
                     /locus_tag="VE223_08235"
     CDS             complement(691..1716)
                     /locus_tag="VE223_08235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HZC21617.1"
                     /translation="MAKKTAAIIRGDGTGPELVEAMIKVLRACDTKIELILCDAGSEF
                     WQKVGGSSYISEGAWTLLEDSDACFKGPTTTIPNPNAPRSVAVSIRQKFELYANVRPI
                     KTYKHNERQLGFICVREATEGLYAGIEFKTSDDSAIAIRKITKKGCERVTKKGFQVAN
                     DVAFKKVFVITKRNILKETDGIFWAAVEKIQKEFKNIEVEEYYVDNMTQQLVKNPERF
                     NDSVLLSTNLFMDIVSECASGHVGSIGTVYSGNYGDDYAMFEPAHGSAPKYAGKDKVN
                     PVATILSGAWMVEYLGEEHISKAIFKATEEVINENRYVTYDLGGKATLSQMTDQIATR
                     AAKLLRK"
     gene            complement(1746..>2109)
                     /locus_tag="VE223_08240"
     CDS             complement(1746..>2109)
                     /locus_tag="VE223_08240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21618.1"
                     /translation="DKHTKLLPNDVGKQPKNGTECLRVIHTDKIGNLIHIQYVRPIRL
                     TMQDFMKIYSYDNRTITVIDNSTGNLERQILTLKNYKIQYSYYSEKGFTPVDIPSKIP
                     PFTNNLLVRLELPLSRHK"
BASE COUNT          611 a          401 c          371 g          726 t
ORIGIN      
        1 gcttgtacaa gaatttttat cagtcaaaat taacctgact ttgattgtga cttcaattga
       61 taatgcagtt ttagataatc tactaaaatc tatcaaaatt tgctttggtc attaaacaat
      121 tatacatcac catagaccta attgtcggta aaaaattgta cctaccatca gaggatagtt
      181 ttcaacttgc acgatccgtt aaatgttaca gaggcaaatc agctttagaa attggagttg
      241 gctctggaat tgtactaaat gcccttcgtg aaaattttaa gattgttgct ggaacagata
      301 ttgattttgc atcgcttata tattgcaaag agaacctatc aaaggaaatt atggtggctt
      361 gttgtgatgc agcttctgcc tttcattata gatttgactt gattgtaagc aatcctccat
      421 atatcccgat cgaagataac gaagagaagg attctgcaat aaatggagat tctgatggga
      481 tagaaacaac gctacatttc ctaaaatctg ctatttcagt tttagatcag gatggcaaga
      541 ttttgataat aattttgagt ttgtccgaca acaggagatt agacgcatta atagtagaaa
      601 tgaaattaaa aagaagaaca gtaatggaaa ggaatttgtt ttttgaaacg ctcagaactc
      661 tagagataag ttttaaatga actacccaat ctattttctt aataactttg cagctcttgt
      721 tgctatttgg tcagtcatct gtgatagagt agctttacca cctaggtcgt aggtgacata
      781 cctattttcg ttgatgacct cctcggtggc tttaaagatt gccttagaaa tatgttcttc
      841 tccaaggtat tcaaccatcc atgcgccaga taaaatagtg gcaacaggat ttaccttgtc
      901 cttacccgca tatttaggag cactaccatg cgctggttca aacattgcgt aatcgtctcc
      961 atagttaccc gaatagacgg ttcctataga tccgacatga cctgatgcgc attctgaaac
     1021 tatatccata aataaattag tgctaagcaa gacgctgtcg ttgaatctct ctggattctt
     1081 tacaagctgt tgtgtcatat tgtcaacata gtattcctcc acttcaatat ttttgaattc
     1141 tttttgaatc ttttctacag ctgcccagaa tattccatca gtttccttta agatattcct
     1201 ttttgtaatt acaaaaacct tcttaaaggc tacatcattt gcaacttgaa atcccttttt
     1261 ggtaactctt tcacaccctt tttttgttat cttgcgaatt gcaatagccg aatcatcact
     1321 ggttttgaat tcgatcccag catataggcc ctctgttgcc tcacggacgc agataaagcc
     1381 taactgtctt tcattgtgtt tgtaagtttt aataggccgc acattagcat ataattcaaa
     1441 tttctgtcta atacttaccg ctacgctgcg tggagcattt ggatttggaa tagtagtggt
     1501 tggtccttta aagcaagcat cactatcttc taatagagtc caagcacctt cggaaatata
     1561 tgaactgcca cctacttttt gccagaattc ggagccagca tcacatagga tcaattctat
     1621 ctttgtatca caggctctca gaaccttaat catcgcctct acaagttcag gacctgtacc
     1681 atcgcctcga ataattgcgg ctgttttctt tgccatttga aatcattcaa ggggcaagat
     1741 catctctatt tatgtctact taggggtaat tccaatctta caagcagatt gttagtgaac
     1801 ggtggtatct ttgatggtat atctactggt gtaaaccctt tttcagagta gtaagagtat
     1861 tgaattttat agttttttag tgtcaagatt tgcctttcca gattccctgt cgaattatct
     1921 attactgtta ttgtcctatt atcataagaa tatattttca taaaatcttg catagttaag
     1981 cgaattggcc tcacatattg aatgtggatc aaattaccaa ttttatcagt atggattact
     2041 cgaagacatt ctgtgccgtt tttgggctgc tttccaacat cattaggcag cagttttgta
     2101 tgtttatct
//
LOCUS       DASQSJ010000422         2351 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_547174, whole genome shotgun sequence.
ACCESSION   DASQSJ010000422 DASQSJ010000000
VERSION     DASQSJ010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_547174"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..591)
                     /locus_tag="VE223_08245"
     CDS             complement(<1..591)
                     /locus_tag="VE223_08245"
                     /inference="COORDINATES: protein motif:HMM:NF013695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HZC21619.1"
                     /translation="MVSGSKKAVYAALAGNLGIAIAKLIAAIMTGSTAMFAETLHSLS
                     DTFNQVLLLIGIKTSTKTATERHPFGYGNEQFFWSFIVATMIFGISGILSLEQGFNSL
                     LGVKTHQITNVNISYFILAISAIFEGNALRIALALLKYDIESHGEKIGITTLIKEFQE
                     SKDPSILTVLVEDSAALLGIIIAGLGIFFSSLTGNTI"
     gene            complement(1160..1282)
                     /locus_tag="VE223_08250"
     CDS             complement(1160..1282)
                     /locus_tag="VE223_08250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21620.1"
                     /translation="MASIHNRKLIAALAKELKAKDSEIEELKEAYLYSIVSLQV"
     gene            complement(1300..1638)
                     /locus_tag="VE223_08255"
     CDS             complement(1300..1638)
                     /locus_tag="VE223_08255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21621.1"
                     /translation="MNQILLTKAKNRFAKVIEIIEQEKHNYKFRTGTLGQDSFRCTIG
                     LILSHYGWTGYSCSSTDYEEADYKLNELISTEEQRIIASINDSSESYEVVIERLERSG
                     RIHSLNSDSK"
     gene            complement(1934..>2351)
                     /locus_tag="VE223_08260"
     CDS             complement(1934..>2351)
                     /locus_tag="VE223_08260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21622.1"
                     /translation="KFNMSEYTYEGKIHSDDRVNYKTIYSSDGIKVGEVEAAFSDSFI
                     VKLEKEQDTEIKYEIPRVEILTLTDERVTLKLTQSEINEKYQTSSINKSSITKIKDVI
                     VCIIGIKKPTELGISECMLRFMAWLCMEYVSYQFII"
BASE COUNT          710 a          449 c          384 g          808 t
ORIGIN      
        1 tatggtatta ccagttagag aagaaaagaa tattcctagg cctgcaataa tgatcccaag
       61 caatgcagcg gaatcctcta ccaaaactgt aaggatagaa ggatccttgc tctcttggaa
      121 ttctttgatt aaagtagtaa ttccaatctt ctcaccatgt gactctatat cgtactttaa
      181 tagagccaat gcaatcctta gtgcatttcc ttcaaaaatg gccgatattg ctaaaataaa
      241 ataactaata ttcacattgg taatctgatg tgttttgact cccaacaacg aattaaaacc
      301 ttgttctaag gaaagaatac cagatatccc aaagatcatt gttgctacga taaatgacca
      361 gaagaattgc tcgttgccat aaccaaatgg atggcgttca gtagcagtct ttgtacttgt
      421 cttaatacca attaaaagca atacctgatt aaacgtgtct gaaagtgaat gtaaggtttc
      481 agcaaacatt gcagtactac cagtcataat ggctgctatc agtttggcta ttgctattcc
      541 aaggttacca gctaaagcgg cataaactgc ctttttagaa ccgcttacca accgtaccag
      601 attatggttt gcatatcaaa tcaatctatc gatcttgctt tttccttgaa ttaaattaat
      661 accgaaagaa ttgtagttat ttagctttat aatgcatatg actaatagat agaaagtgct
      721 ttgttacatg actccgtcaa caacagcagg ctattgtaac gattattatt atagttggtg
      781 tgttttttag aacacaaagt agtatcgtta acagcacatc atcctatagt aagggacctt
      841 cttgaatcga gttctttgtt aaaccatttt tgatttgcca atagcccaat atttattgtc
      901 ggagtattaa atgtggattg ttatagaaaa ttcaggtgcg acatccaaat gtattcatgg
      961 acactaatga agatatcctg aaaaagcacc cttactatca ttccaaatta attccacctt
     1021 ataataagga cttctggaat gaacctactc tttagagatt cccgaaatac tgctggatgt
     1081 gaagagttcc ctcaccagct tgttcttgtt ccttcattgt aatagaccct ataaacagat
     1141 caaaatctat cagacttaat cagacttgta atgatactat agaatataga tatgcctcct
     1201 tgagttcttc tatttcggaa tcctttgctt tcagctcctt tgccaaggct gcaataagtt
     1261 ttctattgtg tattgacgcc attacattca ggggaatatt tatttcgaat cagagtttaa
     1321 tgaatggatt cgtccagatc tctctagtct ttctattact acctcataac tttcgctact
     1381 gtcgtttatg cttgcaatga tgcgctgttc ttctgtggaa attaattcat ttagtttgta
     1441 atctgcttct tcatagtcag ttgaggaaca actataacct gtccagccat agtgactcaa
     1501 aataagacca atggtacatc taaagctatc ctgacctagg gttcctgtcc taaatttata
     1561 attgtgtttc tcttgttcta tgatttcaat taccttggca aatctgttct tggcctttgt
     1621 taaaagtatc tgattcatta gtaaccagca gcaaaaagct accacatagg ctttatagtc
     1681 tttacgatag ttgactaggt agtgttaagt taaggtatct tttctccttt tcttatttag
     1741 aatttgagaa tgcttatttt agattgtgat ttggacaaac aaattatgag gagcacacgc
     1801 tcctacactt cgtgaaaaac tcgggaacga cgggaaaatt aattgaaatt tcaaaagatc
     1861 cggtttgttg ttgacatgtc tagactcatg cagcattctc gtagacatag ctctacgaag
     1921 atcactccaa tcttcatatt atgaactgat aggaaacata ctccatacaa agccaagcca
     1981 taaacctgag catgcattca gaaataccta gctctgttgg tttctttatc ccaattatgc
     2041 agactataac atctttaatc ttagttattg agcttttatt aattgatgat gtttgatatt
     2101 tctcatttat ttcactttgt gttaatttaa gagtgactcg ctcgtctgta agagtcaata
     2161 tctctaccct tggaatttca tattttattt cagtatcttg ttctttttcc agcttgacaa
     2221 taaacgaatc tgagaatgcc gcttcaactt cacccacttt tattccatca gatgaatata
     2281 tagtcttgta gttcaccctg tcgtcgctat gaattttacc ttcgtaagta tattctgaca
     2341 tattgaattt a
//
LOCUS       DASQSJ010000423         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_397673, whole genome shotgun sequence.
ACCESSION   DASQSJ010000423 DASQSJ010000000
VERSION     DASQSJ010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397673"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..194)
                     /locus_tag="VE223_08265"
     CDS             complement(<1..194)
                     /locus_tag="VE223_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal L7Ae/L30e/S12e/Gadd45 family protein"
                     /protein_id="HZC21623.1"
                     /translation="MSKPYYVKFETPKDVVNAVYEAIRLAKQSGRVRKGTNETTKAIE
                     RGSSRLVVIAEDVEPPEVVA"
     gene            complement(275..1657)
                     /gene="glmM"
                     /locus_tag="VE223_08270"
     CDS             complement(275..1657)
                     /gene="glmM"
                     /locus_tag="VE223_08270"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HZC21624.1"
                     /translation="MSEDGNRLFGTNGIRGIFGKDLTIDSTIDLCYSMGTYFKQGPIV
                     IGYDGRSSSPILSKLARSVINSAGLDVGDVGLVPTPCLQYAAKSINYNGGIMITASHN
                     PPDYNGLKAIANDGVEISREDELQVQDIYFSKKFSKIDGHAREFIDQFIVESYVDAVL
                     ALVNVQNIRSRQFTVAIDIGNGAQAIIAPSILKKLGCRVITINGNIDGNFPGRGPEPT
                     VENLHVLSSMVNHSQAHIGIAYDGDGDRSIFCDEKGIIYGGDKTGTLLVKHLLQNKHR
                     SAEVVCPINTTMALSLIAREEGANLIYTKVGSVEVSREMVKRKSFIGLEENGGFMYGK
                     LNEVRDGIMTTALVLDMLASTGQALSVMMSSIPSTFQYKSKFNCPTKQVAVDIINACL
                     THGNPKKIETLDGVKIWIDEETWVMVRASGTEPVVRMYAESTDKLLLNSKIEEYTRLI
                     KSKIISGTNK"
BASE COUNT          594 a          427 c          338 g          693 t
ORIGIN      
        1 tgggctacta cttctggagg ttcaacatcc tctgcaataa caactagcct actggagcca
       61 cgctctattg cttttgtagt ttcgttggtt ccttttctca ccctaccact ttgctttgcc
      121 aagcgtatag cttcatagac agcattcact acatcctttg gagtttcaaa tttcacataa
      181 tatggcttac tcataacgtg tttcttcacc ctgtgggatc atgttgtact tctgtaagag
      241 aagagcaggc gttttaaaaa tgttgtcgat aaattcattt attggtaccg gatataattt
      301 tgctttttat taatctggtg tattcttcga tttttgaatt taagagcaat ttatcggtag
      361 actctgcata cattctaact actggctcgg ttccactcgc cctcaccata acccatgttt
      421 cttcatctat ccaaatcttg acaccatcaa gagtttcgat ctttttagga ttgccgtgtg
      481 tcaaacatgc atttattata tccactgcaa cttgtttagt aggacaattg aatttggact
      541 tatattggaa tgtggatgga attgatgaca tcataacgga taacgcctgg ccggttgaag
      601 caagcatatc caatacaaga gcggtagtca ttataccgtc cctaacctca tttaacttcc
      661 catacataaa tccgccattc tcttctagcc ctatgaaaga tttacgcttc accatctctc
      721 ttgaaacctc aacgcttccc acttttgtat aaatcaagtt ggcgccttct tctcttgcta
      781 ttaacgaaag ggccattgtg gtatttattg gacaaacgac ttcagcactc ctgtgtttgt
      841 tctgcagtaa atgtttgact aataatgtgc cagttttatc tccaccgtag ataattccct
      901 tttcatcaca gaatatgctg cgatcaccat caccatcata ggctattcct atgtgagcct
      961 gcgaatgatt taccatacta gaaagtacat gaaggttttc tacggtaggc tctggtcccc
     1021 tacctggaaa gttaccatct atgttaccat tgattgtaat gactctgcag cctaattttt
     1081 ttaatattga tggagcaatt attgcctggg ctccgtttcc tatgtctata gcaactgtga
     1141 attggcgcga tctgatattt tgtacattta ctaacgctaa aactgcgtca acataggact
     1201 caactatgaa ttgatcaata aactctcttg catgcccatc aattttcgaa aattttttcg
     1261 aaaagtatat gtcttgaacc tgtagttcat cttcccttga aatttctact ccatcattag
     1321 caatagcttt tagtccatta taatccggag gattgtgtga tgcagtgatc attatcccac
     1381 cattataatt tatagacttt gcagcgtatt gtaagcaagg agtaggaaca agaccaacat
     1441 ctcctacatc caatccagca gagtttatga ctgatcgagc taactttgat aaaattggac
     1501 ttgagctcct gccatcgtat cctataacaa ttggaccttg cttgaaataa gtccccatcg
     1561 agtaacaaag atcaatagtt gaatcaatag taagatcttt tccaaatatt cccctgattc
     1621 cattagtacc aaataaccta ttgccatctt cagacatttt tgtcatcatc acctataaaa
     1681 ctaataatac cacaacccca gttatcagca tctaatttgt gattcaattt aatatatagc
     1741 aatagcaaaa gcaaagtaga ttctgtatca gcaacatgta tagacataaa gaaaggaatt
     1801 ggagtgtcat aattagtact gatattataa ccttaacctt ttattgttat ctgcttttaa
     1861 ctttaagtta gttagatact atctaaaagt attaaatgat ttggttttag tcggagaact
     1921 tattcctaga agttctagca gcctgaattt cattgtaaaa gaggagtatg ataacgcgct
     1981 acctgctgta ggttgaaacg aataaaacag tgaatatttc tttgagttaa tgaaatgaac
     2041 ttgcactttg ct
//
LOCUS       DASQSJ010000424         2594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_276655, whole genome shotgun sequence.
ACCESSION   DASQSJ010000424 DASQSJ010000000
VERSION     DASQSJ010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276655"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(596..>2594)
                     /locus_tag="VE223_08275"
     CDS             complement(596..>2594)
                     /locus_tag="VE223_08275"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HZC21625.1"
                     /translation="LWLSAYGSLAYYLYRTYILFHKQFRFKNRTLFLTAVGCAIFLSY
                     IVTVTTSLADLSSTRGIAIFAVIVAYPIFDAILMVPAIVILVNFRNEPLWFTPWVCEC
                     AGILLMAMSDSWFVPIILTSLVNQLWISSLFFAAHYLVIAGGLFWFLTSFAYHHDEHA
                     IKGLETSPKVIFSGTTSKATTRNDNNNDYTLKKRKQNKVRFSYRIIAVIAIIMIVAVI
                     VGISSSRYYPSLSSNAVATLSPVFGIFGIPNLEVAIKPADSQPTVLFGALLPLTGTSS
                     QLGESEKAALEIGVKDINDYFSKTHSKTRIELIIEDTQTDPTTSLQKLKQLQAKGIKI
                     VIGPATSAAVQGVKDYADKNGILLISASSTAPSANIRGKDSEYNTNIFRLVPDDTHQA
                     QAISQRMWKDGIRVVIPFWRTDIYGNGLVNATTKYFHQLGGKVIDSIGYIPYTGDFSA
                     SLNRINFMIWDHDLKSLESKINQAVPLYGLDKIGVYVVAYDEIAPIFTQAQERHDVLS
                     KVKWYGSDGSALVDSLVRNTEAAIFATKTGFPNPIYGVENDNDARLKQIEAEMHKKLE
                     RPSKPYAYVAYDILWITSLTQDSIKKTKSPQGDTVDSFKQKFREIASTYKGITGNTTL
                     NKVGDRRFGDYDIWEIRATNKDNFAWGRVGKYVNGISSTLP"
BASE COUNT          762 a          480 c          478 g          874 t
ORIGIN      
        1 cgataagatt gctcttgaag ctcgttattt tgaatgcgga ctttatcatc caataggatt
       61 gaatatgcta gaatatagag ataaaattct tcatgcaaat gggaagcctt ttacattaac
      121 aggatgcaga tgcagtgaag ataattctat aattgtaccc ataatcaaat gatccttgag
      181 tttctgactt gatctttagt tgctgaatta tccttttggg ttattattag gagctatcag
      241 aatatgtgat atattttggt tgcctcaaac attagtccgt tacttcataa tcttttttgg
      301 atatcttttt gtcgtactga gttgattgca ggaattatta ttattttttc ttattgatag
      361 tacaggttgt tatagagaaa agatgatggt ggtccatgta gagaaacata tactaacaag
      421 acagaacaaa agagacaatc aattgatctc aaccggtgtc attcagtcta tcaaatctgc
      481 tgctgctgct gctttctttc tacccttgca ttcttgtcgt caatacagaa agtccattct
      541 tcttttgaga tataaatatg gactaccata cagagctaca gtaaatctag tgatgctatg
      601 gaagtgtgct tgatatacca tttacatatt tgccgactcg gccccaagca aagttgtctt
      661 tattcgtagc ccttatttcc caaatgtcat aatctccaaa tcttctatct ccaactttgt
      721 taagtgtggt attgccggtt atgcctttgt atgtacttgc tatctctctg aacttttgtt
      781 taaaagagtc gacggtgtca ccttgtggcg atttcgtttt tttaatactg tcttgggtta
      841 aagatgtgat ccacaagata tcataggcaa catatgcgta tggttttgaa ggtctttcaa
      901 gcttcttgtg catctcggcc tctatttgct ttagcctcgc atcgttgtca ttttcgactc
      961 catagattgg atttggaaaa cctgttttag ttgcaaatat ggcagcttca gtatttctta
     1021 ctaggctatc tactagagct gagccatcac taccatacca ttttactttt gaaagcacat
     1081 cgtggcgttc ttgagcttga gtaaaaatag gtgctatctc gtcataagca actacgtaga
     1141 ctcctatctt atctagtcca tacaaaggta cggcctgatt aatcttggac tcaagagatt
     1201 ttaaatcatg gtcccaaatc ataaaattta tcctattgag gctggctgag aaatcacctg
     1261 tgtaaggtat atagccaata ctgtcaatga cttttccgcc taattgatgg aagtatttag
     1321 tagttgcatt gacaaggcca ttaccataaa tgtcggttct ccagaagggt atgactaccc
     1381 ttattccatc tttccacatt cgctgcgata ttgcctgggc ttgatgagta tcgtcaggaa
     1441 ctaacctgaa tatgttagta ttatattcac tatccttacc cctgatattt gctgaaggag
     1501 cagtacttga tgcgcttatt aataaaatgc cgtttttatc agcatagtct tttactcctt
     1561 ggactgctgc actagtagct gggccaatga ctatctttat gcctttagct tgcaattgtt
     1621 ttaacttttg taggcttgta gtcggatctg tctgcgtatc ttcaattatt aattctatcc
     1681 tggttttaga atgggttttg gaaaaataat cattaatgtc tttaactcct atctctagag
     1741 ctgccttttc agactcaccc aattgagaag aagtgccagt caagggtaaa agagcaccaa
     1801 acagtacagt aggctgcgag tctgcaggct ttatcgctac ttcgagattt ggaataccaa
     1861 atatgccaaa aactggcgat aatgtagcta cagcgtttga tgataatgaa ggataatatc
     1921 tgctactgct aattcccaca atgactgcca caatcattat gattgcaatg acagcgatta
     1981 tccggtagga aaatcgtact ttattttgct ttctcttttt gagagtataa tcgttattat
     2041 tatcatttct agtagtagcc ttgcttgttg tgccagaaaa aataactttt ggtgatgttt
     2101 ctaatccctt aattgcatgc tcatcatggt ggtatgcaaa agaagtcaag aaccaaaaca
     2161 atcctccagc tataaccaga taatgggctg caaaaaataa tgaagatatc cacaattgat
     2221 ttactaatga tgtcagtatt ataggtacaa accaactatc tgacatagcc attaaaagga
     2281 tacctgcaca ttcgcatacc caaggagtga accatagtgg ttcgtttcta aagtttacca
     2341 aaattactat tgcaggaacc atcaaaatag catcaaaaat aggataagct actatgactg
     2401 caaagattgc tatacctctt gtagaggata aatctgctaa acttgtagta acagttacta
     2461 tatagctaag aaaaattgca catccaactg cggttagaaa taaagtcctg tttttaaatc
     2521 tgaattgttt gtgaaatagg atatatgttc tgtacagata atatgctagg gatccataag
     2581 cagataacca tagg
//
LOCUS       DASQSJ010000425         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_276920, whole genome shotgun sequence.
ACCESSION   DASQSJ010000425 DASQSJ010000000
VERSION     DASQSJ010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_276920"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VE223_08280"
     CDS             <1..213
                     /locus_tag="VE223_08280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21626.1"
                     /translation="PITSPTPITSPTPITSPPPITSPPPITSPPPITSPTPTSAAAAA
                     STGSPTLTASSQTIGPCPAGICMPDP"
     gene            566..1369
                     /locus_tag="VE223_08285"
     CDS             566..1369
                     /locus_tag="VE223_08285"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HZC21627.1"
                     /translation="MATKESADIGIIGGTGVYDPGLFSEKREIKVYTPFGDPSDLITV
                     GEYAGKKVAFIPRHGKGHRIPPHRINNRANIWALNQLGVKRIIAPTAVGSMKHEYRPG
                     DFAVLDQFIDFTKKRDYTFYDGGRVCHISVADPFCPELRDIVFYQGSLLKYSIHAKAT
                     YVCVEGPRFSTRAESQFFRDVLKADIIGMTLVPECQLARELEICYVSIATVTDYDVWA
                     SSPVSSMEIIELLNKNIEKTKKLIAQLIPAISVNRIKCNCANALEGAVL"
     gene            complement(1385..1696)
                     /locus_tag="VE223_08290"
     CDS             complement(1385..1696)
                     /locus_tag="VE223_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21628.1"
                     /translation="MKAGDIPGESNSQVQVDVFVTNARGSEIASKLTGYFVIKDQQFK
                     FAAIAFGRIGGHNISLNLSKRTLEKIRKIGIDPEMLQLNIQRKLIEGDITLPQGLKLP
                     K"
     gene            complement(1693..2124)
                     /locus_tag="VE223_08295"
     CDS             complement(1693..2124)
                     /locus_tag="VE223_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21629.1"
                     /translation="MATTAEGSEVNNDKIVYFGVININEGTKTIGAVDVWRSVITKAL
                     FCEEKRLGVLEIADYVGMPTIDKDKKWAVAINRKKAGKDRWKLIKLIKEGRFKFTDTD
                     DETCVEVDVQQYRINNSEWWSFLVENNINRNIDINNEANAK"
     gene            complement(2151..2513)
                     /locus_tag="VE223_08300"
     CDS             complement(2151..2513)
                     /locus_tag="VE223_08300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21630.1"
                     /translation="MMAVNINNVEEVLESELKITKEEAKLFVLLIFNGKLDKIKAARL
                     LQWSIDNTERVAKSLINRGMIIDLAETEYESLHPRFAITNRYRNRCEEDNITFKKNLR
                     VDNIGILLEGPYNDARTK"
BASE COUNT          761 a          579 c          481 g          876 t
ORIGIN      
        1 ccaataacat ctccaacacc aataacatct ccaacaccaa taacatctcc accaccaata
       61 acatctccac caccaataac atctccacca ccaataacat ctccgacgcc tacatcagca
      121 gcagcagcag catcaacagg atctccaact ctaacagcat cttcacaaac aatcggtcca
      181 tgtccagcag gtatctgtat gccggatcct tagtaccgct gatcactcgc ggccaaactt
      241 ttaatttttt gagttgagct aaatgtagac caagtaaatt gttgatccga caatgtatgt
      301 ctacacaata atactatacc gttgttctgt cttgctgcgg aacgcgtctt cagaatgtca
      361 catgaaagga atgacaaaat cgagttgcgt tataactggg gtcgctttat ttattattgc
      421 tcagtctgcc attttcaacg gatattaact ggttggctcg ttttcaccat tgcctttgaa
      481 acttattata ttatacatat aatacatgct aaatcaacta tatagcgatg tattttatca
      541 ttgatcaccg gtgtactatt aagtaatggc tacaaaggag tctgcagata tcggaataat
      601 tggaggcaca ggggtttacg atcctggact ttttagcgag aagcgggaga tcaaagtata
      661 tactccattt ggggatccat cagaccttat cactgttgga gaatatgcgg gtaaaaaagt
      721 ggcttttatt ccaagacatg gaaaaggcca ccggatccct ccacacagaa tcaataatcg
      781 tgcaaatata tgggcgttaa accagctagg tgtaaagagg atcatcgcac cgaccgcagt
      841 tggaagtatg aaacacgaat acagaccagg cgactttgct gttctagatc agtttattga
      901 ctttactaaa aaaagggatt atacgttcta tgatggggga agggtttgtc atatatctgt
      961 tgcagatcca ttttgccccg aacttcgcga catcgtgttt tatcagggaa gtctactaaa
     1021 gtacagtatt cacgccaaag caacatatgt gtgcgttgaa ggaccgcgat tttctactag
     1081 ggcagaatct caatttttta gagatgtatt gaaggcagac attattggta tgactcttgt
     1141 acctgaatgt caacttgcta gggaactaga gatatgctat gtctcgattg caacagtcac
     1201 agattacgat gtatgggcca gctcccctgt aagttctatg gaaattatag aattattaaa
     1261 caaaaatatt gagaaaacaa aaaagctgat tgcacaattg ataccagcaa tttcagtcaa
     1321 caggatcaaa tgcaattgtg caaacgcgtt agaaggagcg gtattgtagt agactattct
     1381 ttatctactt tggtaatttt aatccttgtg ggagggttat gtctccttct atcaatttgc
     1441 gttgaatatt cagctgcagc atttcaggat ctattcctat ttttctaatt ttttctaacg
     1501 ttctttttga taggttgagg ctaatattgt gccccccaat tcttccaaat gcaattgccg
     1561 caaatttaaa ttgttgatct ttaataacaa aatagcctgt tagcttactg gctatctcgc
     1621 ttcccctagc atttgtaaca aaaacatcca cttgaacctg gctattgctt tctccaggaa
     1681 tatctccagc tttcattttg catttgcctc gttatttatg tctatgttac gatttatgtt
     1741 attctcgact aggaaactcc accactcaga attattaatt cgatattgtt gaacgtcaac
     1801 ttcaacacaa gtctcgtcgt cagtatcagt aaatttgaat ctgccttctt tgattaattt
     1861 aatgagcttc catctatcct ttccggcttt ttttctattt attgcgactg cccatttttt
     1921 atccttgtca atcgtaggca tgcccacata atcagcgatt tctaggactc ccaatcgttt
     1981 ttcttcgcaa aataatgcct tggtaattac gctgcgccag acatctactg caccaatagt
     2041 ttttgtacct tcgttaatat taattacgcc gaaatataca atcttgtcat tgttgacctc
     2101 tgaaccctct gctgtagtag ccatttactc ggttcttgga agcaaatgcc ttatttagtt
     2161 cttgcatcat tatagggacc ttccaacagg atcccgatat tgtcgaccct caggtttttt
     2221 ttgaaagtga tgttgtcttc ctcgcatcga ttcctatatc gattagtgat agcaaatctt
     2281 gggtggagcg attcgtattc tgtttcggca agatcaatga tcattcctct attgattagt
     2341 gattttgcca ccctctctgt attatcgatg ctccactgca gcagcctagc tgcctttatc
     2401 ttgtctagct tgccattaaa tatgagcaaa acaaataatt ttgcctcttc ttttgttatc
     2461 tttaactcag attctagaac ctcttcaacg ttattgatat tgactgccat catcaattac
     2521 cattacagga tgtgcaacac tctggtatta acgttggact tgctagcatt gtaactctat
     2581 cttttgaggc atgtgttgag atgaattcga attggaacag gcctttctta gctgtcctag
     2641 atcgtgcaac taggaacatt gtaaatatta atattccaag caatactcat actccta
//
LOCUS       DASQSJ010000426         2189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_313652, whole genome shotgun sequence.
ACCESSION   DASQSJ010000426 DASQSJ010000000
VERSION     DASQSJ010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2189
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313652"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VE223_08305"
     CDS             <1..218
                     /locus_tag="VE223_08305"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HZC21631.1"
                     /translation="RFIITNSKVRVFNNIAVVVCLENIETSVNRHNVKLGIIATNIFE
                     NDDTNQWLLIHHHGSSISNYVPPNVSL"
     gene            1016..2035
                     /locus_tag="VE223_08310"
     CDS             1016..2035
                     /locus_tag="VE223_08310"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HZC21632.1"
                     /translation="MAIRLMKQKKWSVYVTRRILDPAIPMMLKECNVRVANRRGKPAT
                     RTDLLKGVRDKDAILCTLSDKIDAKVMDVAGSNLKVISSYSTGVDHIDIKEATKRGIY
                     VTSTGNILTETTADLAFALILATSRRIVQGHEIVTSKRWKYGWDPHLLLGSDVHGMVI
                     GIVGLGKIGSAVARRAKGFDMKIIYHNLHGRNLQMEELVGAEHADMDKLLEESDFLSL
                     HCSLNNKSYHLIEKSNLRRMKKSSYIINTARGQIINETDLTKAIKKRWIAGAGLDVFE
                     KEPPSPNNPLLKMKNVVVLLPHIGSATFLTRTKMAEIAARNLLNILNGKNAIYLANPQ
                     IINDL"
BASE COUNT          789 a          384 c          392 g          624 t
ORIGIN      
        1 ttagatttat aatcacaaac tccaaggtaa gagtctttaa taatattgca gtagttgtat
       61 gtttagaaaa catagaaact tcagtcaaca gacacaatgt taaactgggc attattgcta
      121 ctaacatatt tgaaaatgat gacaccaatc aatggctgct tattcaccat catggttcat
      181 ctatatcaaa ttacgtacca cccaatgtat cgttatgata tttaatatta tatcgtaact
      241 gatgtctgat gtctgatatc tggagttcct ggcacttata gacaacaaaa agatcaaaca
      301 aatacttctc gtcgttgtaa gaacatgaag gacaaatttg agcacacata tatgacgtaa
      361 aaatttcacc gatcatcata gttataataa cagaaacctc attcagcagt aggaaactga
      421 aatgaaaaca ttgctagctc tagtagtaat ccttgtcaat ttgactcaaa cactaaaagc
      481 cgatacatct attagaaaca tagatatcac tttgaggtga atacaagcac atgcgcaagt
      541 tactcttcac tacgctttct tcttgtttcc acacttgaag gagcgagagt aacagcatct
      601 acaatccttt caaattatca gacactgctt cgtatagttt ctaatattgg catttattct
      661 acaggtagga aaccaactaa ataatgcagc ataaattaca aaacagatag gtagtaagca
      721 taacattagt agtaacgaca agtctgatca cagatgtgaa aaaaattgac atattggttg
      781 ttagctctaa tcctcttttt acgacaacca aacttaaatc catagataac ctctaaactt
      841 gctctataat gctcttatga caaaactgtt aatttttttc catcaacctg atatgaaaaa
      901 tattagtttt gattttgtat gtgttcatct aactgcttca attaatccga tttgatgaaa
      961 ctaaaaattc cttgcaacca caggtgatga atcttaaccc attataatga agtctatggc
     1021 aataaggtta atgaaacaaa aaaagtggag tgtctatgtt accagaagga tattggaccc
     1081 tgcaatacct atgatgttga aagaatgcaa cgttagggta gcaaatcgca gaggaaagcc
     1141 agctactaga actgatcttt tgaagggagt gcgtgacaaa gatgcaattc tgtgcacatt
     1201 atcagacaag atagatgcaa aagttatgga cgttgcggga tctaacctca aagttattag
     1261 ctcttacagc acaggggtag atcatatcga tattaaagag gcaacgaaga gaggaattta
     1321 tgttacttct actggtaata tacttaccga aacaacagct gatcttgcat ttgcattaat
     1381 ccttgcaacg tctagaagaa tcgtccaggg acacgagatt gttacaagta aaagatggaa
     1441 atatggatgg gatccgcatc tgctattggg ttcggatgtt catggtatgg taattggaat
     1501 tgttggacta ggtaaaatcg gatcagctgt agcacgtaga gcaaaagggt ttgatatgaa
     1561 aatcatttac cataatctac atggtcgaaa ccttcagatg gaggaactag ttggcgctga
     1621 acatgccgat atggacaagc ttctagaaga aagtgatttt ctttctctcc attgctcttt
     1681 gaacaacaaa agttatcatt tgattgagaa atcaaatctc agacgaatga aaaaaagttc
     1741 atacataatt aatacagcac ggggtcaaat cattaatgaa acagatctga cgaaagcaat
     1801 aaagaaaaga tggattgcag gagcaggact tgatgttttc gaaaaagagc caccctcacc
     1861 aaacaatcca ttattgaaga tgaagaatgt tgttgtgtta ttgcctcata taggcagcgc
     1921 tacatttttg actcggacaa aaatggccga aatagcagct agaaatttgc taaatatctt
     1981 gaatggaaaa aacgcaattt atcttgcaaa cccacagata atcaatgact tataacatca
     2041 aaaataagac atgcacatat tcttaactag aagccaaata ttacaagcgt aaccgtacca
     2101 attgtatgaa aagagccttc attgcctatt gttaagaatg gtttccagca ccaagctatg
     2161 ctgataatat aaaattagaa caagaccag
//
LOCUS       DASQSJ010000427         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_277496, whole genome shotgun sequence.
ACCESSION   DASQSJ010000427 DASQSJ010000000
VERSION     DASQSJ010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277496"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..441)
                     /locus_tag="VE223_08315"
     CDS             complement(<1..441)
                     /locus_tag="VE223_08315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21633.1"
                     /translation="MTDKSSLPSDIEIIKQRKKDGIDIPLQKNVQAKTTSNYLEYVKF
                     IHNALPELNYNDINTSTTFLKHKFSAPIIIDSMTGGTSEAININGRLAELAEKYGFAM
                     GVGSQRAGLESEELAETYSVARKNAPTAFLVANIGGAQLGKGLTV"
     gene            complement(443..1216)
                     /locus_tag="VE223_08320"
     CDS             complement(443..1216)
                     /locus_tag="VE223_08320"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HZC21634.1"
                     /translation="MGRNLVLIKLGGSVITFKEKPLAANFQAINNISRMLASLKIPLI
                     VVHGGGSFGHYLSIKFNIHTRPDQYDPHGISSVHESMIALNQIIVDSMIRVGMNPYAI
                     MPSIFILDHRPIARKIRELQYFTEDNIIPITFGDVVHVKNRTYSIISGDELMSILSKI
                     LRPSKVIFTLNVDGIYKDMNKKEVLKELNNNNNSINFSTVLQDVTGGMRRKVVEALKI
                     CGTGIDVLMVNGLKPERIANAITGTDFEGTMIKGWRIGK"
     gene            complement(1251..>2129)
                     /gene="mvk"
                     /locus_tag="VE223_08325"
     CDS             complement(1251..>2129)
                     /gene="mvk"
                     /locus_tag="VE223_08325"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HZC21635.1"
                     /translation="NKRVNVTVNLNETQTINIRSDLGLMASYTGSKFNLIRGGKNTKE
                     ILDPLYKCASDVLLERKQNLGIDINLISEVPCGIGLGSSAACCVATVAAVDSLFHVPD
                     KRWVCAKAVESERLIHNNSSGGDCYISTFGGLMYYSKNKGFKKIESRKDLSLIVVNTG
                     VRHSTGDLVSSVKRFKDDNVSLFKDLSSYANNICQNAFAAINIGDQKQLGKLMNENHA
                     LLQQLRVSHKKIDRVAKICIKNGALGAKVTGAGGGGSMIALILNEDKIKVISNIEMNS
                     YECMPVKIDYDGLVVY"
BASE COUNT          613 a          453 c          339 g          724 t
ORIGIN      
        1 aaccgtgagc cccttgccaa gttgtgctcc accaatgttt gccacaagaa acgcagtagg
       61 ggcatttttt cttgcgacag aatatgtctc agcaagttcc tcactttcta gacctgctct
      121 ctgactaccc acacccatag caaatccata cttctccgca agttccgcca atctcccgtt
      181 aatgttaatt gcttcagaag ttccaccagt catggagtca ataataattg gtgcagagaa
      241 cttgtgcttc agaaaagtag ttgatgtatt gatatcattg tagttgagtt ctggtaaagc
      301 attatggatg aatttaacgt attctaaata atttgatgtc gtcttcgcct gaacattttt
      361 ctgcagcggt atatcaatac catctttctt gcgctgcttt atgatttcaa tatccgatgg
      421 caaactagac ttatctgtca cactattttc caatcctcca tccttttatc attgtacctt
      481 cgaaatcagt accagttata gcatttgcaa tacgttccgg cttcaatcca tttaccatca
      541 atacatctat tccagtacca catatcttta gtgcttctac gactttcctt cgcataccgc
      601 ctgtcacatc ttgtaatact gttgaaaagt tgatggaatt gttattgtta tttaattctt
      661 tgagaacctc tttcttattc atatctttat aaattccgtc aacattaagc gtaaaaatga
      721 ctttcgatgg tcttagaatt ttggaaagga ttgacattaa ttcatcgcca gaaataatcg
      781 aatacgttct attttttacg tggacaacat ccccaaatgt tatcggaatt atattatctt
      841 ctgtaaagta ctgaagttcc ctaattttcc tagcaatcgg tctatggtct aatataaata
      901 tcgaaggcat aattgcataa ggattcatcc ctactctgat catggaatca actataattt
      961 ggtttaatgc aatcattgat tcatgtaccg acgatatacc atgcggatca tattgatctg
     1021 gtcttgtatg gatattgaat tttattgaca aataatgtcc aaatgaacca ccaccatgga
     1081 ctactatgag tggtattttt agagaagcaa gcatacgtga aatattgtta attgcttgaa
     1141 agttggctgc aagtggtttt tctttgaagg ttattaccga tccgccaagc ttgatcaata
     1201 ctagattacg tcccatcttc taaaaaatca cagcatagcg gatttaaagc ttagtatacc
     1261 actaaaccat catagtcgat cttcacaggc atacattcat agctattcat ctcgatatta
     1321 gaaattacct ttattttatc ttcattcaga ataagcgcaa tcatacttcc acctccacct
     1381 gcgccggtga cttttgctcc taaagcgcca tttttaatac aaatcttcgc cactcggtca
     1441 atttttttat gtgagactct gagttgctgt aacaatgcat gattttcatt cattaatttg
     1501 ccaagttgtt tctgatcgcc aatgttgatt gcagcaaaag cattctgaca aatattgttt
     1561 gcataagaag ataagtcttt aaacaatgac acattatcat ctttgaatct tttgaccgaa
     1621 gaaaccaaat ccccagtaga gtgtctgact ccagtattta cgacaatcaa agacaaatct
     1681 tttctcgatt caatcttttt gaatccttta tttttactat aatacattaa acctccgaac
     1741 gttgaaatgt aacagtctcc cccagaagaa ttgttgtgga ttaagcgttc tgattcaact
     1801 gcttttgcac acacccatcg tttatcgggt acatgaaaga gtgaatctac cgcagctacc
     1861 gtggctacac aacatgccgc ggaagatcct agtccaatcc cacatgggac ttctgaaatt
     1921 aaatttatat ctattcctaa attttgtttc ctttccaaaa ggacatcgct tgcgcactta
     1981 tagagcggat cgagaatttc ctttgtgttc tttccgcctc ttattaagtt aaactttgaa
     2041 cccgtatatg atgccataag ccctaagtct gatctaatat tgattgtttg ggtttcattc
     2101 aaattgacag tgacattgac acgcttgtt
//
LOCUS       DASQSJ010000428         2910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_314074, whole genome shotgun sequence.
ACCESSION   DASQSJ010000428 DASQSJ010000000
VERSION     DASQSJ010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314074"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..190)
                     /locus_tag="VE223_08330"
     CDS             complement(56..190)
                     /locus_tag="VE223_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21636.1"
                     /translation="MARITDGYRLLIYEPDMGFVFDDDAYIKRKNYLVMLAILHAITK
                     "
     gene            complement(640..1302)
                     /locus_tag="VE223_08335"
     CDS             complement(640..1302)
                     /locus_tag="VE223_08335"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HZC21637.1"
                     /translation="MTQHYHHHLSDKFLLYLNSSLAMENAALERVQRRVQQTILEDAR
                     QQLQHHLEETKEQQDRLMQLITKFGGTPTQERGELPLAIPPESIRNIIHSSTSAAEQE
                     LMQSVEDTIVENAEVTGYNLLIQMAEKMNAGDAIPSLRQSLQEEEKMFGWLRATAPAM
                     FAKLWPQIESSSSSSSSSKIKTTTESVADIDQTFNCESCNTSFNSREELRQHTIQKHE
                     NK"
     gene            complement(1899..2078)
                     /locus_tag="VE223_08340"
     CDS             complement(1899..2078)
                     /locus_tag="VE223_08340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21638.1"
                     /translation="MAETQAITQFYCPVGSGKTVTVYVELQKQNSDCKVTHLYVESKF
                     GQKESLKLQEQKVAS"
     gene            2499..>2910
                     /locus_tag="VE223_08345"
     CDS             2499..>2910
                     /locus_tag="VE223_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HZC21639.1"
                     /translation="MGKKELTNLFSSDPNRYYKVSLFDRMGFKRQRCNSCGKFFWTLV
                     ERMLCPDHENYSFIGKPPTNKRLDYVNAWKETEEYFQFNGHSITRRYPVVCRWRDDLY
                     FTIASIVDFQRVMGNKVVFELPANPLLVPQMCLRF"
BASE COUNT          868 a          536 c          495 g         1011 t
ORIGIN      
        1 aagcatcctt ataccatcta gctccatctg tgaatatggg tttattgcat atctatcatt
       61 tcgtaattgc atgaagaatc gctaacataa caagatagtt ctttctcttg atatatgcat
      121 catcatcaaa cacaaatccc atgtcaggtt cataaataag caatctataa ccgtcagtaa
      181 tccttgccat ctatctgaat taatgtcatc cacaaatatc atatcatttt tacctgattc
      241 ttattaaccc taaatcgatc tacaacatca gcatgttttc tgcatccatt catttccaga
      301 tggaatatga gatcgtttta tgatatgatc taaagatcta gaagcacatc tgtaacccct
      361 agaattaaaa tataggtata aaccataagc aaccagggtt tggcttgttc taatgacttc
      421 aaatcaataa aatattagaa gatactaagc tatagatctt gcaaagttaa cagagcctat
      481 tcagcctctg aaactttttt tatgtgatta agttttcaat tcaaatctca taattgacta
      541 attgatgtag cgcttataga ttgttcacgg gaaggagaga tatttatcat gctcaaatcg
      601 cgatcccggg taaataaaac gatttttcta ttgcctgttt tacttatttt cgtgcttctg
      661 tatagtgtgc tgccttagct cttctctaga gttaaaactt gtattacaac tttcgcaatt
      721 aaaagtctga tcaatatcag caacactttc tgttgtagtt ttgattttag aagatgagga
      781 tgaagacgag gacgattcga tctgaggcca taactttgca aacatggcag gtgcagtagc
      841 tctaagccat ccaaacatct tttcttcttc ctgcaagctt tgtctgagag aaggtattgc
      901 atcacccgca ttcatcttct ctgccatttg tataagaagg ttataccctg ttacttcagc
      961 attttccact atcgtatcct ctactgattg cattaactct tgctctgcag cactcgttga
     1021 actatgtatg atatttctta tggattccgg tggtattgct aacggtaatt ctcccctttc
     1081 ttgtgttggt gttcctccaa actttgtaat caactgcatt agcctgtctt gctgttcctt
     1141 tgtttcctcc aaatggtgtt gtaattgctg cctggcatct tctaatattg tttgttgtac
     1201 tcttctttga actctttcta aagcggcatt ttccattgcc aatgaagaat tcaaatacag
     1261 aagaaattta tcacttagat ggtgatggta gtgttgtgtc attgtttttt acataggcaa
     1321 ttctttgata taatggttga tatcattaca ataaaaagat tattctatta gcattattct
     1381 gcttttatgc aatctgtcaa gaaatgccta ttcctcgaca cagttctaaa atagcacata
     1441 aaggaaacca gataaggcat tgcttagcaa tgccttggtt tctatgattt agacttctaa
     1501 atagatgtga gagttcctca tggtcctttg aactaaagcc attgcttgta aagctcgtga
     1561 agtttggatg aaagattcag gatagtaagg cgggtctaaa taaatgaacc accctctttt
     1621 gcattatcaa aagccgcatc tttgtaagga cttgtgtgta tcaatacatt aaggtgatga
     1681 acaatcaaac ggtgaggtct agttattacc tttaactagc aaggcaaaag ctcataaacc
     1741 atttgttact taataaaata tatttcttgt aaaagaatat gacacagaaa gccaagcgac
     1801 tttcttcttc aaaatcacgg taatctacat aagaatattg agtaataaag aagaatggga
     1861 ataattaacc ttcctttgtt gcttatatcg aagctttatc acgatgcaac cttttgctct
     1921 tgcaatttaa gagattcttt ctgaccaaac ttactctcaa catataggtg ggttacttta
     1981 caatctgaat tttgtttttg caactccaca taaactgtaa cagtctttcc acttccaacg
     2041 gggcaataga actgtgtgat tgcttgtgtc tctgccatta ccatcaagta agttatcgat
     2101 gttttctgat ccagtcgata tacattctat atttctcttt gtaaatttct ctttgtaaat
     2161 tggatcatta caatgacaag catgatggta tcctttgctc aatgcaggta tactacactc
     2221 atggtcatgt gtgaatagtc atgtgtgatg tctttcaagt atgatatgcc tgtgaagaat
     2281 aataagcgat ttctatctca ccagctttaa tcatgtttga aatttgtttc gaaagatatc
     2341 atgtgcagtc ttgtattcct tcgaatctac tttaaagttg cttgctcata cttacatcat
     2401 tttccacgat atcactaatt gagaccatct gttattggtt gtcaaaagga agatataagt
     2461 cactattatt taccacctat tattagggat agcaagcatt gggtaaaaag gaacttacta
     2521 atcttttctc atctgatcca aataggtact ataaagtttc tttatttgat agaatgggtt
     2581 ttaagcgtca gaggtgtaac agctgtggaa aattcttttg gacactggtt gaaaggatgc
     2641 tttgtcctga ccatgaaaat tatagtttta taggtaaacc tccaacaaat aagcggcttg
     2701 attacgttaa tgcttggaaa gaaacagaag agtattttca atttaacggt cattcaataa
     2761 ctaggagata tccagtagtc tgtagatggc gcgatgacct atatttcacg atagcgtcaa
     2821 ttgtcgattt tcaaagagta atgggaaaca aagtggtttt cgagctacct gcaaatccac
     2881 ttcttgttcc acagatgtgc ttacgcttca
//
LOCUS       DASQSJ010000429         3170 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_278202, whole genome shotgun sequence.
ACCESSION   DASQSJ010000429 DASQSJ010000000
VERSION     DASQSJ010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_278202"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..414)
                     /locus_tag="VE223_08350"
     CDS             complement(<1..414)
                     /locus_tag="VE223_08350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21640.1"
                     /translation="MKPSLGSTICLVAALSLGIILMPILFENNPSLVFAQKQTNTSSS
                     TSMQSGLIPNNNTIIGNTIIPSNTNGTTTTAKNATGTSGIGVNPALLASNVTAANAFT
                     KENTTAPVSPTGISTNAAHAPPSVRGNASGVNSMLG"
     gene            complement(676..1581)
                     /locus_tag="VE223_08355"
     CDS             complement(676..1581)
                     /locus_tag="VE223_08355"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HZC21641.1"
                     /translation="MLKHYTINISLIHIAVGTSMAVFGVALLFFAGIFSLAPQSTHIH
                     QAMAQPVGDFPIPDAMRMFTNNTALIKRFTLDPYILDMAILPKSVAAGQSALFVLNAF
                     HKPTMTWLWHTDYSIYITDAKTGQKLVIFPNLHGHGGMVQFEYKFPSAGLYNVGIIFG
                     QQTGSPNFIVEPKVIRQINIPVNVAAAQSSSPIPKGAHVQVIPIKVQSWKFTPNIIQV
                     KKGDIVRLVFTTAQDEVELYNGHGFGIEGYNVNVFLLKGTQQTIQFVADKPGTYTFRC
                     TSFCSSPEAALENHFNMTGKFIVQA"
     gene            1778..>3170
                     /locus_tag="VE223_08360"
     CDS             1778..>3170
                     /locus_tag="VE223_08360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21642.1"
                     /translation="MLFFNNYKFNKRKVLDDNRDKTSNSKVGIKISYVITLSLLLVLS
                     VSLSAIGSSLTIKSASAQAVMSPPAPLVTGVVNSGKPPSTSILKIAPGYKIEPVLWNL
                     TLPSTVTFDSNGSMYVAEAGYSYGEFKPIPRILKLDDKGRVSVLVDRGLNGPITDIEF
                     NKHDGLLYASHRGVISAIDGRGHIKDLIVALPSMGDHHNDQIGFGSDGRLYFGQGTVT
                     NTGVAGEDSYAYGWLKTSPELHDIPGKDIKLAGQNFESANPLTPQNFSDFATTGAFVP
                     FGTSTTKGQVIKGETKCSGCIISSKLDGTDLKVVAWGLRNPYGLAFGNDGKTLLFDNN
                     GADERGSRRVANDSDKVYTVDISKPTDIGKWYGWPDYFGNAEPVTNPKFKSESQPGNQ
                     SLQFVMQDHPPVQKPLSLLGEGVAVTQTAFSSSNNFGFRGLAFIGEFGTAAPLIHPFA
                     QLTTPLPGFTPTIT"
BASE COUNT          963 a          599 c          643 g          965 t
ORIGIN      
        1 tcccagcata ctattaactc cactagcatt tcctcttact gaaggcggag catgcgctgc
       61 gttagtagat atgccagttg gagataccgg tgcggtagta ttttctttgg taaaagcatt
      121 cgctgctgtc acattacttg caagtaatgc agggtttacg cctattccgc ttgtgccagt
      181 agcatttttg gcagtagttg tagtaccatt tgtatttgat gggattatgg tatttccaat
      241 tatcgtgtta ttatttggta ttaatccgct ttgcatagat gttgatgatg atgtgtttgt
      301 ttgtttttgc gcgaacacca gcgatggatt attctcaaac aagataggca ttaaaattat
      361 gccaagcgat agtgctgcta ctaaacaaat cgtggatcct aaacttggtt tcattgtatg
      421 aaacgtgcag caatgcactt aacgattttg actttttatt atgaagatgc attacctttt
      481 ggatcataat gattgaaaca ttttttatga gataaaatat tccaataaat aatgttaatg
      541 ttgatgatgt taataaccat cctaggccta gttcacggtt taatctataa atagagatac
      601 agcgaaccag agcatgattt tcgaaaaaaa gaaaaaagaa taggaaattt tttctcttca
      661 gctttcgaga tatatctagg cttgtactat gaacttgcca gtcatattga agtgattttc
      721 tagagccgct tctggtgagg agcagaatga tgtgcatctg aatgtatacg tgccaggctt
      781 atcggcaaca aattgtatcg tttgttgagt tccttttagg aggaatacgt taacattgta
      841 gccctcgatc ccaaaaccat gtccattgta caactccact tcatcttggg cggtcgtgaa
      901 aactagcctt actatatcac cttttttcac ttgaattatg tttggtgtaa atttccatga
      961 ctgaaccttt attggtatca cttgtacgtg tgctcccttt ggaataggtg atgaagattg
     1021 ggccgctgct acattcactg gaatgttgat ctgtctgatg acctttggct caactatgaa
     1081 gttaggcgag cctgtctgct gaccaaatat tatgccgaca ttataaaggc ctgccgatgg
     1141 aaacttgtat tcaaattgga ccataccacc atgaccatga aggttaggaa atattacgag
     1201 cttctgtcct gttttagcat ctgttatata tatgctgtaa tcggtatgcc aaagccacgt
     1261 catcgttggt ttatggaaag cattcagtac aaatagagca gactgaccag ctgctactga
     1321 cttaggcaat atagccatat caaggatata tggatccaaa gtgaatctct ttatgagagc
     1381 cgtgttgtta gtaaacatcc tcatagcatc agggatagga aagtctccta caggttgtgc
     1441 catcgcttgg tgtatgtgag tcgactgagg agccagactg aaaattccgg caaagaataa
     1501 caatgcgact ccgaatactg ccattgatgt tccgactgca atatggatta agctgatatt
     1561 gatcgtatag tgtttcagca tctggtttca tagagtcact aaatgttata tacgttgcat
     1621 ttatttacca tgtcgcacat ctgttgtgac ttaacctatc atacatatga aacaggactt
     1681 cataacaatt atcatatcta taaaaatgaa tcatgtcttg agtaaaaaag tcatatctct
     1741 ttatattcta taatacactt ctttttttga agtgcacatg ttatttttta ataattataa
     1801 attcaacaaa cgtaaagtac tagatgataa tagagataaa acaagtaatt caaaggtagg
     1861 cataaaaata tcatatgtaa taactttatc tcttcttcta gtattatcag tatccctcag
     1921 tgccattggt tcttctttga ctataaagag cgcatcagca caagctgtca tgtcacctcc
     1981 agcaccatta gtaacaggag tagtcaattc tggaaagccc ccaagtactt ctatattaaa
     2041 gattgctcca ggctacaaaa ttgagcctgt tctatggaac ctaacacttc caagcacagt
     2101 cacatttgat agtaatggaa gcatgtatgt agcagaagct ggatattcat atggtgaatt
     2161 caaaccaata ccaagaattc tcaaattaga cgacaaggga cgcgtatcag tcctggtgga
     2221 taggggatta aatggaccta taactgatat tgaatttaac aaacacgatg gcttgttata
     2281 tgcctcacat cggggagtga tttcagccat tgatggtagg ggtcatataa aagatctcat
     2341 agttgcattg ccaagcatgg gcgaccatca caatgatcaa attggatttg gatccgatgg
     2401 tcggctttat tttggtcagg gcactgttac taatacagga gtcgctggag aagatagtta
     2461 tgcttatgga tggttaaaga catcgccaga actacatgac attccaggaa aggatataaa
     2521 attagctgga cagaattttg aatcagcgaa tcctcttaca cctcaaaact ttagtgattt
     2581 tgccactaca ggcgcgtttg ttccatttgg cacgtctaca actaaaggcc aagtaatcaa
     2641 aggagaaacg aaatgcagtg gatgtattat aagttcaaag ctagacggta ctgatctcaa
     2701 agttgttgct tggggtcttc gcaatccata tggcttagca tttggcaacg acggtaaaac
     2761 actactgttt gacaataatg gcgctgacga gagaggaagc aggcgggtag ccaacgacag
     2821 cgataaagta tatactgtgg atatttcaaa gccaaccgat atcggaaagt ggtacggatg
     2881 gcctgactat tttggaaatg ccgaaccagt aacaaaccca aaattcaaat ctgaatctca
     2941 accaggtaat cagtctctcc aatttgtaat gcaagatcat ccaccagtcc aaaaaccgct
     3001 atcccttcta ggtgaaggag tagcagttac acagactgca ttttcaagta gcaataattt
     3061 tggctttaga ggattggctt tcataggaga gtttggaaca gcagcaccgc taattcatcc
     3121 ctttgcacaa ttaacaacac ctctccctgg tttcacacct acaataacag
//
LOCUS       DASQSJ010000430         4571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_76482, whole genome shotgun sequence.
ACCESSION   DASQSJ010000430 DASQSJ010000000
VERSION     DASQSJ010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4571
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76482"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..1006
                     /gene="larB"
                     /locus_tag="VE223_08365"
     CDS             131..1006
                     /gene="larB"
                     /locus_tag="VE223_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HZC21643.1"
                     /translation="MNIRTILEKYSRGQLTIDEVQRHISIHSIERIGANLARIDVDRE
                     IRKEVPEVIFAMGKENRDLLKIISASLSRNEEVIVSKVQKEFLPKLCNLLRKQKLVVE
                     VGNKSSTILVTTRSFSDHKFDGPCGKVGILAAGTSDIGVAEEARLVAKAMGCNTILSY
                     DIGIAGMHRMFPAIEEMMSRNANSIVVVAGMEGALASVVSSIVNVPVIGVPTSVGYGF
                     GSDGVAALASMLQSCTFGLAVVNIDNGIGGGAFAALIANQIVRKEVSITSKSRNQKQK
                     MIAETLDGKGRKKKH"
     gene            1075..1659
                     /locus_tag="VE223_08370"
     CDS             1075..1659
                     /locus_tag="VE223_08370"
                     /inference="COORDINATES: protein motif:HMM:NF006342.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HZC21644.1"
                     /translation="MNYNAMLRRNRQRKTNYRKREALLISRSSFVTVRISNQNVICQV
                     SKPSSVGDIVICSAHSRELKKYGWKGSMNNLPACYIIGYLLGKKSIEKGTNRAILYSG
                     KHAFTSRTAAALKGLIDAGLDVPVSKDILPTEERIRGRHIAEYANILKEDLEKYNTRF
                     SSLLKDGLQPQDYPSHFEAILNRINKGEKNDNKI"
     gene            1744..2364
                     /locus_tag="VE223_08375"
     CDS             1744..2364
                     /locus_tag="VE223_08375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HZC21645.1"
                     /translation="MSRYSKQQEHHLDWKPRTILGGQVASGKISSMDQVYENGMRIQE
                     AEIVRHLLPEIKSQVVHVGIVQKQTDAGEMTRFGAIVAVGNEAGWFGIGKGKASQMRI
                     AIDKATNAAYLNVIPIKLGCGSWECRCSQLHSVPFKVQGKGGSVTIDIVPGPRGLGLV
                     AGENIKSLLKLAGLKDAWTKSFGSTNTMSSTTKAIFNALRGTYVAG"
     gene            2364..2837
                     /locus_tag="VE223_08380"
     CDS             2364..2837
                     /locus_tag="VE223_08380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HZC21646.1"
                     /translation="MMVTMAYLVVRIRGTVNIPIWAKKTLDNLNLDKKFRATIIAENY
                     ETLGMLRKVKDIVAWTSVDASFVKELLEKRGRKNGYKPLTNSDLPNEYKNIEELATAI
                     AENKITTLSKLKSIKPWFALAPPRGGFRRKTKTQFAQSGILGENQQLIQLVKNML"
     gene            2920..3342
                     /locus_tag="VE223_08385"
     CDS             2920..3342
                     /locus_tag="VE223_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL15 family ribosomal protein"
                     /protein_id="HZC21647.1"
                     /translation="MATRFRKSRRQRGSRYCGWGQIGQHRQAGARGGVGQAGKHKHLW
                     IRTVIEEPNHFGHDPFNSFNRNHIQRWINIKDLDSVFAKYGKVESNGKVILDLTSLGY
                     DKLLGGGKPTGAFTVRVAKVSRNAKDRIESIGGEVVVN"
     gene            3339..>4571
                     /gene="secY"
                     /locus_tag="VE223_08390"
     CDS             3339..>4571
                     /gene="secY"
                     /locus_tag="VE223_08390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HZC21648.1"
                     /translation="MNTTDNESVLRRVIKKVSAYIPQVEKPKKKITLTEKFVWSGIAL
                     FAYLIMGQIPLYGVTSDPKFDFLAFARVIFAAQQGTLLELGIGPIVTAGLLMQLLKGS
                     DLLKLNFKNPDDRSLFTSATKIVTIIVIIAEGSLYGTSVYGHLVARPEFIGILVSQLV
                     GSSIIVMLLDELVQKGWGLGSGISLFIMAGVAQGILWSIFSPLPAQDGPVGIFPFLIN
                     SATNGHIGDTLFRSGQLPSIFGMIITSLVLLVLVYVQGIHIDIPIVSTKYRGFTAVYP
                     IKLLYTSNIPVILSSALLANAVFMGQMLWANYNPQNDNPVFNWIAQFDPGRPQTPTGG
                     LLYYITSPHSLDAATQDPVRAVAYVVFLTAIVTVFGRLWVELGGLSAKSAAKNLLDAE
                     VQVPGFRRSEGSVQVLLNK"
BASE COUNT         1447 a          816 c         1045 g         1263 t
ORIGIN      
        1 tattgaactc gaacttgata ccattgaaca gaatattttt aatcggggaa taactagtct
       61 aaaggatgtg attaatgctt tgccaattta actacccttt cttctattgt aatgactttt
      121 gtgttaaaac atgaatataa ggactatatt ggagaaatac tcgcgtggtc agctcaccat
      181 agatgaggtg caaagacata tttctatcca ttctatagaa cgtattgggg ctaacctagc
      241 gcggattgat gtcgacagag aaatccgaaa ggaagtgcct gaagttattt ttgcgatggg
      301 taaggaaaac agggatcttt taaaaattat ctcggcttct ttaagtagaa atgaagaggt
      361 catagtcagc aaggttcaaa aagaattttt acctaaactt tgtaatttat tgagaaaaca
      421 gaaactagtg gtagaggttg ggaataaaag ctcgacaatt ctggtcacca ctagatcttt
      481 ttcagatcac aaatttgacg gtccctgtgg aaaagtaggc attcttgcag cagggacctc
      541 cgatatagga gtcgcagaag aagcacgact ggttgccaag gctatgggtt gcaacacaat
      601 tctgagttac gacataggaa ttgctggaat gcacagaatg tttcctgcta tagaagagat
      661 gatgtcccgt aacgctaatt ctatagttgt cgttgcaggc atggaaggcg ctctagcatc
      721 tgtagtatct tcaatagtaa acgttccagt cattggcgta cctacctctg taggctatgg
      781 atttggttca gatggagttg ctgctctcgc atctatgcta cagagctgta cttttggtct
      841 agcagtagta aatatagata atggcattgg tggcggtgca tttgcggcat taatagccaa
      901 tcaaattgta cgaaaggaag tgagcattac gtcaaaatct cggaatcaaa aacaaaaaat
      961 gattgcagaa acgttagacg gcaaaggacg gaaaaaaaag cattaaaacg tttataagtg
     1021 cttagaaccg cttgcctgat cgtatttggc aggaatacgt ggtgaatgtt aattatgaat
     1081 tataatgcta tgctcaggcg gaacagacaa aggaaaacca attacagaaa aagagaagca
     1141 ctactaatca gtaggagttc tttcgtaaca gtcaggatca gcaaccagaa tgttatctgt
     1201 caagtgtcga aaccaagctc agttggagac attgtcattt gttccgctca cagcagggag
     1261 ctaaagaagt atggttggaa aggttcaatg aacaatttgc ctgcttgcta tattatcggt
     1321 tatcttttag gcaaaaaatc tattgaaaag ggaaccaatc gcgcaatctt atattcaggc
     1381 aaacatgcct ttacatcacg aacagctgca gctttgaaag gtttaatcga tgctggactt
     1441 gacgtccccg tctccaaaga tattttacca actgaggaac gcatacgagg aagacatatt
     1501 gctgaatacg cgaatatttt aaaagaggac ttagaaaaat ataatactcg tttttcatca
     1561 cttttgaaag atggattgca gcctcaagat tatccatctc attttgaagc gatcctaaac
     1621 agaattaata agggagagaa gaatgataat aaaatttaga cacaaatatt ataagagaaa
     1681 taattatgca gattatgaaa tgataaaagt gagagcttat ataataggag gcaatgacat
     1741 ctattgagca gatactctaa acagcaagaa catcacttag attggaaacc ccgtactatt
     1801 ctaggtggcc aagtagccag cggcaaaatc agctctatgg atcaggtcta cgaaaatggt
     1861 atgaggatcc aagaagctga aattgttaga catttactcc cagagataaa aagccaagtt
     1921 gttcatgttg gtatcgtgca aaagcagact gatgctggcg aaatgacacg ttttggtgcc
     1981 atagttgcgg taggaaatga ggcaggatgg tttgggattg gtaaaggcaa ggcatctcaa
     2041 atgcgcattg ctattgacaa ggctaccaat gcagcttatc ttaatgtaat tccaatcaag
     2101 ctaggatgcg gcagctggga atgtaggtgc agccagcttc actcggttcc gtttaaagtt
     2161 cagggaaagg gaggcagcgt aactatagac attgttccgg gtcccagagg tctaggttta
     2221 gttgctggag aaaatatcaa aagccttttg aagttggcag gattaaagga tgcctggact
     2281 aaatcctttg gatcaactaa tacaatgtct tctacaacaa aggcgatatt caatgctctt
     2341 agaggtactt acgtcgcagg ttgatgatgg ttacgatggc atatttggtc gtaagaataa
     2401 ggggaacagt taacatccca atctgggcta aaaaaactct ggataattta aatcttgata
     2461 aaaagtttcg agctacaatc attgctgaaa attatgaaac tctgggcatg ctaagaaaag
     2521 taaaagatat agttgcgtgg acttcggttg acgcgagttt tgtaaaagaa ctgttggaaa
     2581 agaggggacg aaaaaatggt tacaaaccgc tcacgaattc tgatctgcca aacgaataca
     2641 agaatatcga ggagctagca acagctatag cagaaaataa aataacaaca ttatccaaat
     2701 taaaaagcat aaaaccgtgg ttcgcacttg ctccacccag gggcggattc agacgaaaaa
     2761 ccaagactca gtttgctcaa agtgggattc ttggagagaa ccaacaattg atccagctgg
     2821 taaagaatat gctatgaatg cagcaaaaga cttatttaag gtgacatgtt cattttaaaa
     2881 cacgttccta tttaatatat ggagaatgta tcgataatta tggctaccag atttagaaaa
     2941 agtagaaggc aaagaggaag tcgttactgc gggtggggac agattggtca gcatagacaa
     3001 gctggagcca gagggggagt agggcaggca ggtaaacata agcacctctg gattagaact
     3061 gttattgaag agcccaatca ttttggtcat gatccattca attcctttaa ccggaaccac
     3121 atccaaagat ggataaatat aaaagatttg gactcagtct ttgctaaata cggaaaggtt
     3181 gagagtaacg gcaaagttat tttagacttg acgtcccttg gctacgacaa gctacttggc
     3241 ggcggcaagc cgactggcgc tttcacagtc agggttgcaa aggtatcaag gaatgccaag
     3301 gatcgaatcg aatctattgg aggagaagta gtagtcaatt gaatactaca gataacgaaa
     3361 gcgtattaag acgggtcatt aaaaaagtat ccgcatacat tcctcaagtt gagaagccaa
     3421 agaagaagat cacacttacg gagaagtttg tttggagtgg gattgcgctt tttgcttatt
     3481 tgatcatggg ccaaattccc ctttatggcg ttacaagcga tccaaagttc gattttctag
     3541 catttgccag agtgattttc gcagcacagc agggaactct attagaactt ggaatcggtc
     3601 caatagttac agccggtttg ctcatgcagc tcctcaaggg ttctgacctc ctcaaactca
     3661 atttcaaaaa tcctgacgat cggtctttgt ttacatcagc tacaaagata gtaacaataa
     3721 tagtaatcat agcagaaggt tctctgtatg gcacaagtgt ttacggtcat ctagtggcac
     3781 gtccagaatt tatagggatc ctggtcagtc agctggttgg atctagtata atcgtaatgc
     3841 tgctggatga attagttcaa aagggttggg gattaggctc tggtattagt ctttttatca
     3901 tggctggtgt cgcacaggga atcctttgga gtatatttag tccactacct gctcaagatg
     3961 ggccagtagg gatatttcct tttctgatca actctgctac caatggtcat attggagaca
     4021 cattgttcag atcgggtcag cttccaagta tatttggcat gataataaca tctcttgtac
     4081 tattggtatt agtatatgtt caaggtatac atatagacat accaattgtt tccacaaaat
     4141 ataggggctt cactgcggtt tatccaatca agttattata tacctcgaac attcctgtaa
     4201 ttctgtcctc tgccttactc gctaatgctg tttttatggg acagatgttg tgggctaact
     4261 acaatcctca aaatgacaac cctgttttca attggatagc tcaatttgat cccgggagac
     4321 ctcagactcc cactggaggt ttgttgtact atattacttc accccacagt ttagatgctg
     4381 caacacaaga tcccgtaagg gctgtggcat acgtcgtgtt tctgacagct attgtaacgg
     4441 tttttggtag attgtgggta gaattagggg gcctgtcggc caaatctgct gctaagaatc
     4501 ttctggatgc tgaagttcag gtccctggct ttaggcgttc agagggatca gtacaggttc
     4561 tacttaacaa a
//
LOCUS       DASQSJ010000431         2076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_549712, whole genome shotgun sequence.
ACCESSION   DASQSJ010000431 DASQSJ010000000
VERSION     DASQSJ010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549712"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VE223_08395"
     CDS             complement(<1..552)
                     /locus_tag="VE223_08395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21649.1"
                     /translation="MNRNLRIGYIAALLLALVTTLAYEKVYPQPASQKVFTVSIASGS
                     GSKAGAVSIPFSPNTLFIHKGDIVSWRNQDTVNHTVVALSFNSGIIWPQGSAHGSPTY
                     SHTFDKEGTFIYVDRLHPYMGGVIYVDVPTSQRELVSTTGSFVKVNVEMPQNAAYENN
                     YGPFFIPANTQVASGTMVTWTNKD"
     gene            complement(1253..1891)
                     /locus_tag="VE223_08400"
     CDS             complement(1253..1891)
                     /locus_tag="VE223_08400"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HZC21650.1"
                     /translation="MKHSRDTNVYNRSDNKIKKYIVCTFIVFALLVVYMLAITNSAIF
                     KKGVANAIALSSNQTTVTKNNASIEKAGKPANKQTLTLSNITKMTTTQGNVTTNANAA
                     SSYPPKEANATKVFPPNNKVAIILGAALKRDKAYQPNPVNVKAGGTVVWSNEDTVVHT
                     VTSGSGFNDQNFGREFDSGFLGKGFSHIFFKPGVFPYFCEIHPTMVGKVIVK"
BASE COUNT          631 a          380 c          369 g          696 t
ORIGIN      
        1 gtccttatta gtccaggtca ccatcgtacc tgacgcaacc tgagtattag cagggataaa
       61 gaaaggtccg taattatttt cataggcagc attttgtggc atttctacat ttactttgac
      121 aaaggaacct gtggtggaaa ccaattctct ttgagatgta ggtacgtcca cataaataac
      181 tccacccata tatggatgta gcctgtcaac atagatgaat gtaccttctt tatcaaatgt
      241 gtgactgtat gttggcgaac cgtgtgctga tccttgtggc cagattatgc cagaattaaa
      301 gctcaatgct acaactgtat ggttcactgt atcttgattt ctccaagaaa caatatctcc
      361 tttatgaata aagagcgtgt taggactaaa tgggatggat acagctcctg ctttactacc
      421 tgaaccagaa gctatactaa cggtaaaaac cttttgtgat gcaggctgtg gatagacttt
      481 ttcataagcg agagtggtga caagtgctag gaggagagct gctatgtacc cgattcggag
      541 atttctattc atataagaaa tacttactaa caaggtaata agaagtgaca gtatattatt
      601 atatgaacaa catactacga atttgtactg atactacgaa ttcgtccagt gtatcggata
      661 ctgtttaaaa ataataatct taaatgaaat ttcagaatat attcccacca taaaaaaact
      721 gtattaaggt aaaaaattta ttctgagaag tttcaaatct tccaacatct ccagtaatga
      781 tggttttgga acatcacaaa gcatagccta gatgcgtgag agacacctgg caataccaaa
      841 aaattattcg atacgatatt tgctctttgt ttcttcttta ttaaaagtcg cggcatagca
      901 ctgctcaaat ccaatattac tcaaatactc ataccttttt cattgacttc tttctatgta
      961 tttttgtttc gtctttatca gaacatgcta ccgagaatcc ctagcatata cctacaacgc
     1021 gaacttagaa taataataga agggttattg attctttcct tagttattgc gaaagcataa
     1081 gttatgttat aatcaagaaa atagtattag tgactcatgc cttgtttttt ggttaatttg
     1141 tacaatgctc gatggattac ctgtatgcta aaagccgaga cgtcatacat cttgctacat
     1201 aacatctagt caaatcttta gatcaaatct cttacaacat gtgcgatagc agtcatttta
     1261 ctataacctt ccctaccatc gtaggatgaa tttcacagaa gtatggaaag acgcctggct
     1321 tgaagaatat gtgtgaaaaa cctttgccca agaatcctga atcaaattct cttccgaaat
     1381 tctgatcatt aaatcctgag ccagatgtta cagtatgtac tacagtatct tcgtttgacc
     1441 aaaccacggt acctcctgct ttgacattta ctggatttgg ctgatacgct ttatctcttt
     1501 taagagctgc ccctagaatg attgcgactt tgttattagg tgggaacact ttagtggcat
     1561 tagcttcttt tggtggataa ctagatgctg cgtttgcatt ggtggtaaca tttccctgag
     1621 ttgttgtcat cttcgttata ttacttaagg tcaaagtctg cttgttagct ggtttgcctg
     1681 ctttttctat gctcgcgtta tttttggtaa cggtggtttg attagatgat aatgctatcg
     1741 catttgctac tcctttctta aagattgcag aatttgttat agcaagcata tacacaacta
     1801 acaaggcaaa aacaataaaa gtacaaacaa tatatttttt aattttatta tcacttcgat
     1861 tatatacatt agtatctcta gaatgtttca tgatctcttg aatgagaaga gagtcatata
     1921 tgatttaaag agcggatgca atgtttactc taacattgtt ttataataaa aatatacaac
     1981 cttgttcaac cttttcattc cttaattctt ggcgaaacat cctcagtgga ttgccagtac
     2041 gttatttatc ttactggcgt ttcagcaatg cagagg
//
LOCUS       DASQSJ010000432         3666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_549826, whole genome shotgun sequence.
ACCESSION   DASQSJ010000432 DASQSJ010000000
VERSION     DASQSJ010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549826"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..321
                     /locus_tag="VE223_08405"
     CDS             133..321
                     /locus_tag="VE223_08405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21651.1"
                     /translation="MPSTLSTTISKMATVPNNTNSTLIDEYYQYIKTNGVSERHQNNS
                     LKMVIAFANSLGERYYFL"
     gene            353..601
                     /locus_tag="VE223_08410"
     CDS             353..601
                     /locus_tag="VE223_08410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21652.1"
                     /translation="MNTKVKSSEEDPDKRWITTWNYYLVHIKWFFRWLHNFKCKGNIS
                     EDTPESEWMTPPFINIKKGEPTDSVPTMKMRFGNEMSC"
     gene            607..1035
                     /locus_tag="VE223_08415"
     CDS             607..1035
                     /locus_tag="VE223_08415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21653.1"
                     /translation="MKYEPFIRNKAALTLLWDLDARNHEITLLKIKNIRLKENYGEGD
                     IPYQAKTGSGPILLTCSFPYVRDWLNEHPFKNSQDARLICSLPNGSPIKPEAMWTMMK
                     QLRGRIIRILESGSISDGESRSFTPLLKYLPDVKVCSSRW"
     gene            1181..1618
                     /locus_tag="VE223_08420"
     CDS             1181..1618
                     /locus_tag="VE223_08420"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HZC21654.1"
                     /translation="MKSFWILGDIYTVKISGDETQGRYSVWEIEAAPNSGPPLHKHSM
                     EDEAFYVLEGEFSFPYGSKETKAGKGQFIYSPRGQFHTYKNIDNYFGKLLLIISPPQF
                     EKFFEEIGIPIKDKSSFEPPQITPAVVENIVKIAARYGLEIKT"
     gene            2080..2487
                     /locus_tag="VE223_08425"
     CDS             2080..2487
                     /locus_tag="VE223_08425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21655.1"
                     /translation="MFITTKLSYYGAIVVNIAIQTSMYFDTTIRRAISHGMWTFDAKD
                     PLDFIQKNKDYTLKDVAGNIKCPTLVLEAQMDDDFPGGPKKIYDALACSKKYVLFTTE
                     EGAEDHCQVAALSLSNQRIFDWLDDVILQKQSS"
     gene            3352..3597
                     /locus_tag="VE223_08430"
     CDS             3352..3597
                     /locus_tag="VE223_08430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21656.1"
                     /translation="MYYTNKISTTMAIVAIVTTVTLVTAGNIVTASTLAVKKHTAAFN
                     SISSTITKRTTDQLGQFTNCLKAVDPELTRVAADLCW"
BASE COUNT         1247 a          610 c          692 g         1117 t
ORIGIN      
        1 gtggagcgtt cgactgataa tcgaaaggtc aagggttcaa ctccctttcg gcccatcaac
       61 tacatgggtt catataccta tgcaaggcac tatacaatac aagtaatctt aggtgaggtc
      121 aagagataat ctatgccatc aacgctatca acgaccatta gcaaaatggc aactgttcca
      181 aataatacaa attcaaccct gattgatgaa tattatcagt atataaagac aaatggtgta
      241 tcagaacggc atcagaataa cagtctaaaa atggttattg catttgcaaa ttctttgggg
      301 gaaagatatt actttttatg atataaaaag caaagagcaa gtcacttctt ttttgaatac
      361 caaagttaaa agctcagagg aagaccccga caaaaggtgg attactactt ggaattatta
      421 cttggtacac ataaaatggt tttttcgatg gctacataac tttaaatgta aaggcaatat
      481 ctctgaagat acacccgaat cagaatggat gacacctcct tttataaata ttaaaaaagg
      541 agaaccaaca gactcagtcc ctactatgaa aatgagattt gggaacgaga tgagctgcta
      601 actatagtga agtatgaacc atttattcgt aataaggcgg cattaactct tctttgggat
      661 ctagatgcta gaaaccatga aattacttta ttgaaaatca aaaacattag actcaaagag
      721 aactatggtg aaggagatat tccatatcaa gctaaaaccg gttctggccc aatactatta
      781 acatgttcat ttccgtatgt acgggattgg ctcaatgagc atccatttaa gaattcacaa
      841 gacgcaaggc tgatctgtag tctccccaat ggatctccca tcaaaccaga agcgatgtgg
      901 accatgatga aacagttaag aggaagaata attcgaatat tagaaagcgg ttctatctca
      961 gatggagaat caagatcttt tacacccttg ttaaagtatt taccagatgt caaagtttgt
     1021 tcttctagat ggtaatacta ctgcatttat ttaaattgtt ttttggaaat aaaatgcttc
     1081 aagtatataa ctatatacta ttcccaggcc gacaatgata aatatcatgt acaattaagt
     1141 ttcttagatt agatagttgt ttcctgcttc ggaaactaag atgaagagct tttggatctt
     1201 aggtgatatc tatactgtaa agattagtgg tgatgaaaca caggggagat atagcgtatg
     1261 ggaaattgaa gcagctccga atagcggacc tccacttcac aagcattcaa tggaagatga
     1321 ggcattttat gtcctagaag gagagttttc atttccatat ggcagtaaag agacaaaggc
     1381 tggtaaggga cagttcatat atagcccaag aggacagttt catacttaca agaatatcga
     1441 caactatttt ggaaagttat tgttaatcat ctcgccaccg cagtttgaaa agttctttga
     1501 agaaattgga ataccaatca aagacaagtc gtcatttgaa ccaccacaga taacgccagc
     1561 agttgttgag aatattgtaa agattgcagc aaggtatggt cttgaaataa aaacataggc
     1621 aactgcgtac ttccatatga gagccagctg gatatcagct ttcatttaca caaactgttg
     1681 ctgataataa attcactgct agcatctttt agacgtttat catgcgtgat agtttttgga
     1741 aacttggctg tgaacctaaa gttctcaggt gtcttgtcga accaattttt gactgtgaaa
     1801 acgttggcgt tttataaaag gaagaatcaa tctctacata gtcgcgatgg caggcgtgtt
     1861 acaggaaaat aatgtgttta tttattgacc tttttgttcg tatatgagag caaaaatatg
     1921 cataatattt aaatataatg tccatgtaat atcgttatac aaatgtgttt gcagacaagg
     1981 tgatgatgct actgctatag cacagacaga agctatgggc aaaaatatct gatctagtaa
     2041 agctatagca gagcatactt cgacgtaaat ggaactgaga tgtttataac aactaaatta
     2101 tcatactatg gtgctatagt tgttaatatt gcaattcaaa catctatgta ctttgataca
     2161 actataagaa gggcgatttc tcatggtatg tggacatttg atgcaaaaga tcctttggat
     2221 tttatacaga aaaacaaaga ctatactcta aaagatgtgg caggtaacat aaaatgtcct
     2281 accctcgtac ttgaagctca aatggacgat gactttcctg gaggaccaaa gaaaatatac
     2341 gatgctcttg catgttcaaa gaaatatgtg ttatttacta cagaagaagg agctgaggat
     2401 cattgtcaag ttgctgcact ttcgctgtca aatcaacgga tatttgattg gctagatgat
     2461 gttatattgc aaaagcaaag ttcttgaata aggttttcga tataaattct aggagaaaag
     2521 ttgtgagtcc atcaagctag atcacaaaca caaaatagca gtcaaataat atagtaataa
     2581 tcaactttgt tctattatgg tagtagctgc tactactgat tttctttatc ttagatttat
     2641 tggtgataga agtatagact agaagcactt tggaaagaaa caaaaggata gagtgatgga
     2701 aatgaaaaat ggacaagtaa agttaaaaga acaattaagg gaggaggaaa agtaggagga
     2761 agaaaaagta tcaatcttgc aatagtgtct gctaataacc attatgctgg ttttggtcca
     2821 ggtactccaa aagtcgttac tgaacatctt gacaaatcag atagtggata atgcaatggt
     2881 tgcagctgta gtaaaagaaa tgattcgtta tgaaggttta gctacgaagt tattacttta
     2941 ttgtccttct tccttttctt ttatcatatg tacttggctc ttcgtcattt gatataggag
     3001 tagccggatg acttactttt cgagttggtt ttcgttgctc atctagttca agttcctttg
     3061 cctgctcagt actaagacct ggtttttcga tttgttttta tcattactca ttttctagct
     3121 ctttataagg ctagacttta ctaggaatct ttcctggtag cataatgaaa gactacgaaa
     3181 caaaacttga cattgactaa caaccttctc ttgtttcgtt accaacgaaa gctacacttt
     3241 catactgtat tattactcac attgttacct tacattataa tactataata catcattctt
     3301 ttgatgataa tcttcgaata ttataataga tatatacaca actttaagtc gatgtactac
     3361 acaaacaaaa tatcgacaac gatggctatc gttgccattg tcacgacagt aaccttagta
     3421 acagcgggta atattgttac tgcttcaaca ctagcagtaa aaaaacacac tgctgcattt
     3481 aatagtataa gcagtactat tacaaaaaga acaactgacc aattaggtca atttactaac
     3541 tgtttaaaag cggtagatcc tgaacttact cgagttgccg cagacctgtg ctggtagaag
     3601 tagcagtatt agagcaacga gcagttttat tcgcatttct ctttctaatc tttttaaaaa
     3661 gccatg
//
LOCUS       DASQSJ010000433         3559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_549889, whole genome shotgun sequence.
ACCESSION   DASQSJ010000433 DASQSJ010000000
VERSION     DASQSJ010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549889"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..874
                     /gene="hemC"
                     /locus_tag="VE223_08435"
     CDS             <1..874
                     /gene="hemC"
                     /locus_tag="VE223_08435"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HZC21657.1"
                     /translation="KRNPSIGFEAVTIRTKGDVDRRPLFTIDEKGIFEKDVNEAVISR
                     EVDFAVHSLKDIPSELSDKLTIASIPKRATPNDVLVNGKKIKFIDLPSSSVIGTCSLR
                     RAIQVMRKRPDLCIKPIRGNVETRVKKSMTGEYDSLILAEAGLTRLNMREVIVERFSI
                     KDFLPSPGQGAIAIVCRKDDRGLIKILKRIEDARTRAEINAERSMLQEIEGGCRFPVG
                     TCAVSSRDESKITLYANVFSADGTKSIKVKETGSSREPKRLGIAVANLLIKSGTMKLV
                     DGWHEAVQKWNNGL"
     gene            856..1623
                     /gene="cobA"
                     /locus_tag="VE223_08440"
     CDS             856..1623
                     /gene="cobA"
                     /locus_tag="VE223_08440"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HZC21658.1"
                     /translation="MEQRIMTKSGKVFICGAGPGDPKLISIKAMETLNNCDVVLYDRL
                     VCKELIDQIPETAEKIYVGRSIGDAITHQDNTNDLMVEQAKKGKIVLRLKGGDPFIFG
                     RGGEEAEYLFEHNIEFEIIPGITSATGSAAYAGIPLTHRKFASSIAIVTGHEDPEKKE
                     TSIQWDKLAQAVSTIVVLMGIERLDSIVHSLIKAGLSNDTEIAIIENGTTMEQRVIKG
                     TLYNIVETVKSAKIKPPAIIIIGKVVSLQEKLNWFNK"
     gene            1620..2438
                     /locus_tag="VE223_08445"
     CDS             1620..2438
                     /locus_tag="VE223_08445"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HZC21659.1"
                     /translation="MNFLTASLDDKILAITRKDSDAQEFAQLVSSEGGRTISLPVIDI
                     KPKNPKVVEEFICNVNEKKHDYCLFMSSQAVKVLFDLARKIDRTRETISTLNSRTIVA
                     IGPKTKQSLINHGVAVKIVPEKYSSEGLIDLFSKMDSVNGKRIIVPRSEAAKEFVLKA
                     LCDLGMSVDELFLYNIFTSKIDNSWNDFSSLLKQKKVDAIIFTSTSTVRSFFEIMQIL
                     SLNVNSLLNNVKAIIAIGPFTNRELRRRNIQSLEAKEHTIRGTFELAKLVLREI"
     gene            2577..>3559
                     /gene="sufB"
                     /locus_tag="VE223_08450"
     CDS             2577..>3559
                     /gene="sufB"
                     /locus_tag="VE223_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HZC21660.1"
                     /translation="MTTEELNMDYSKYDFKDSTELYVYLSKKGLSRGTVEEISKMKGE
                     PDWMRNFRLRSYDVFMSKPMPNWGGDMSKIDFQNIYYYAKASEKQSKNWDDVPESVRN
                     TFDKLGIPEAEKKFLAGVGAQYESEVVYHNLREDLQKQGVIFIDTDTAVKEQPEIMRK
                     HFGKVIPPEDNKFAALNSAVWSGGSFIYVPPNVKVELPLQAYFRINAENIGQFERTLI
                     IADEGAEVHYIEGCTAPIYTTESLHSAVVELIAKKGAKIRYTTIQNWSKDVYNLVTKR
                     AYAYENATVEWIDGNLGSKLTMKYPGVYMLGRGAHAEVVSVAFAGAGQHQDA"
BASE COUNT         1211 a          544 c          801 g         1003 t
ORIGIN      
        1 aaaaagaaat ccttctattg gttttgaagc tgttacgatt aggaccaaag gcgatgttga
       61 cagaagacca ctattcacca tagatgaaaa aggaattttt gaaaaagatg taaatgaagc
      121 tgttatttca cgggaggttg attttgctgt tcatagtttg aaggatattc cctcggaact
      181 ttccgataag ctaactattg catctattcc aaaaagggct acaccaaatg atgtgctagt
      241 aaatgggaag aaaattaaat tcatagacct cccttcttct tctgtaatag gaacttgcag
      301 cttaagacgc gctattcaag taatgcgtaa acgtcctgac ctatgtatta aacctattcg
      361 aggaaatgtg gaaacaagag taaaaaaatc aatgacagga gaatatgact ccttgatcct
      421 tgctgaagct ggcctaacca gactcaatat gcgggaagtc attgtcgaaa gatttagtat
      481 caaagatttc ctgccatctc caggacaagg tgcaattgca attgtgtgca gaaaggatga
      541 ccgagggtta ataaagattt taaagagaat tgaagatgca agaacaaggg ctgaaatcaa
      601 tgcagaacgc tcaatgctgc aagaaataga agggggatgc agatttcccg tgggcacctg
      661 tgctgtgagt agtcgtgatg aatcgaaaat tactctttat gctaatgtat tttcagcaga
      721 tggtacaaaa tcaattaagg taaaagaaac aggcagtagt agagaaccaa aaagactcgg
      781 gatagcggtg gccaacttgc ttattaagag cggtactatg aagttagtcg acggatggca
      841 tgaggcagta caaaagtgga acaacggatt atgacaaaaa gtggtaaagt tttcatctgt
      901 ggtgcaggac caggtgatcc gaaattaatt agtatcaaag ccatggaaac attgaataat
      961 tgtgatgtcg tactttacga cagactcgtt tgtaaggaac tcatcgatca gatacctgaa
     1021 acagccgaaa aaatttatgt cggtagatct ataggagatg cgataactca tcaggataat
     1081 actaatgatc ttatggtcga gcaagctaaa aagggtaaga tagtattgcg actgaaagga
     1141 ggcgatccgt tcatattcgg aaggggcgga gaagaagctg aatatttgtt tgaacacaat
     1201 attgaattcg aaataattcc cggtatcaca tccgcaacag gttcagctgc ttatgctgga
     1261 attcctttaa cgcatagaaa attcgcatct tccatagcta ttgttacggg tcatgaagat
     1321 cctgaaaaaa aagaaacatc tatacaatgg gacaaattgg ctcaagcagt cagtacaata
     1381 gttgttttga tggggataga gaggctagac tcgattgtac atagtttgat aaaagctggt
     1441 ttgagcaatg atacagagat agccattatt gaaaatggaa ctaccatgga gcaacgggta
     1501 attaagggta ccttatataa tattgtagaa acagtcaaga gtgcaaaaat aaaaccacct
     1561 gcaatcataa taattgggaa ggttgtttct ttacaggaaa agcttaattg gtttaataag
     1621 tgaattttct gactgcaagt ctggatgata agatattagc aataacaaga aaagactctg
     1681 atgctcaaga gtttgcacaa ctcgtaagtt cagagggtgg aagaactatt tcgttacctg
     1741 tgattgatat caaaccaaag aatccaaaag ttgtcgagga atttatctgt aatgtaaatg
     1801 aaaaaaaaca cgactattgt ctattcatga gttctcaggc agttaaggta ttatttgatc
     1861 tagcaagaaa gatagacaga acaagagaga ctatttctac actaaactca cgaactattg
     1921 tagcgattgg acccaagacc aaacagagcc tgataaatca tggtgtagca gtcaaaatcg
     1981 tacctgaaaa atactcatct gaaggattga tagatctttt ttcaaagatg gattctgtaa
     2041 atggaaaaag gatcattgtc cctagaagtg aggctgctaa agaatttgtt ctaaaggctt
     2101 tgtgtgattt gggcatgtct gtggatgaat tatttctgta taatatattt acttctaaaa
     2161 ttgataatag ttggaacgat tttagttcgt tattgaaaca gaaaaaagtg gatgctatta
     2221 ttttcactag tacatctacg gttaggtctt tttttgaaat catgcaaata ctctcgctta
     2281 atgtgaactc cttactgaac aacgttaaag ctataatagc tattggccct tttactaata
     2341 gagagttgag gaggagaaat attcaatcat tagaagcaaa agaacacacc ataagaggga
     2401 catttgaatt ggcaaaactt gtactgcgtg agatatagga tgatcatata ttcgtgatct
     2461 tagctctagg ctccgttttg tgttaacaga aggtatttat agaattgtta gattagttaa
     2521 aggtatagct gttatacccg taagtatata taaaacataa cgccgttata ctctatatga
     2581 ccactgaaga attgaatatg gattatagca aatatgactt taaggattct actgagcttt
     2641 atgtttactt gagcaagaag ggactatcta gggggactgt tgaagaaatt agcaagatga
     2701 aaggtgagcc agactggatg aggaacttta gattgaggtc atatgatgtt ttcatgagca
     2761 aaccaatgcc taattggggt ggtgatatgt caaagatcga ttttcagaat atttattact
     2821 atgcaaaggc ttctgagaag caaagcaaga attgggatga cgttccagag tccgtaagaa
     2881 acacgtttga taaactcgga attccagaag cagaaaaaaa attccttgca ggcgttggcg
     2941 ctcagtatga gtctgaagta gtctatcata acttaagaga agacctgcaa aaacagggcg
     3001 tgatatttat tgatacggat actgcagtca aagagcagcc ggaaattatg aggaagcatt
     3061 ttggaaaggt cattccacca gaagataata aatttgcggc gttgaatagt gctgtttggt
     3121 caggtggttc atttatttat gttccaccaa atgtgaaagt ggaacttcca ctccaggcgt
     3181 attttcgaat taatgctgaa aacataggtc agttcgaaag aactctgatt attgcagatg
     3241 aaggtgccga agttcattat attgaaggct gtactgcacc gatttatact actgaatctt
     3301 tgcactctgc agttgtagaa ttgattgcta agaagggtgc taaaattaga tataccacaa
     3361 tacagaactg gagtaaggat gtatataacc tggtaacaaa aagagcatat gcgtatgaaa
     3421 atgctactgt tgagtggatc gatggaaatc tgggtagcaa gttgactatg aagtatcctg
     3481 gtgtttatat gcttggtaga ggtgctcatg ctgaagttgt gtcagttgct tttgctggtg
     3541 caggccagca ccaagatgc
//
LOCUS       DASQSJ010000434         2327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_315720, whole genome shotgun sequence.
ACCESSION   DASQSJ010000434 DASQSJ010000000
VERSION     DASQSJ010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_315720"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..306
                     /locus_tag="VE223_08455"
     CDS             178..306
                     /locus_tag="VE223_08455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21661.1"
                     /translation="MISTGVLEDGAKLGWPGAKALNSKSTLWAYEFPASNSADIQR"
     gene            375..1394
                     /locus_tag="VE223_08460"
     CDS             375..1394
                     /locus_tag="VE223_08460"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HZC21662.1"
                     /translation="MVLTNQKVAVVSGSSTGIGFETCLLFARSGIRTYATMRDLTKAH
                     LIKDIVQKEKIPLKVIQMDVDKDDSVAEAFKQIGKDDDYGRKMRVDILVNNAGFGLFG
                     ALEDQSIEDIKKQFETNVFGAIRTIQQVLPIMRDQRSGVIVNISSLAGYIGFPASSVY
                     NSTKFALEGLSESLAYEIEPYGISVVLIEPGVINTNFVEKIMIPGNTRSISSYLLSSS
                     SSSLSPSTTSPKVTSSLSTIGSDSNIHSYNSKSDREITKYAHVVERFLSHYYPAMRNA
                     PSPKEVAKVVLESINDSIVSTRQGANNNLFRYPVGEDAKLYADAKRKMSDSELHSFVA
                     KRILS"
     gene            1701..2054
                     /locus_tag="VE223_08465"
     CDS             1701..2054
                     /locus_tag="VE223_08465"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HZC21663.1"
                     /translation="MDYDKLCKDILILDPKVRFAGVCDESGETKYGGFREGINHLLSP
                     DDTKKANLQALARWGLRNSLAPKIGKGKYAMAEYEKVKRITLPLENYHLLLITTEIDA
                     DHINIIDNALKLLRS"
     gene            complement(2141..>2327)
                     /locus_tag="VE223_08470"
     CDS             complement(2141..>2327)
                     /locus_tag="VE223_08470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21664.1"
                     /translation="KSTRDIAKELRMSLRDISNISIKNQSSHGNVITNDNDNRKNKTT
                     KPIPESRSLVVSIFLDA"
BASE COUNT          755 a          367 c          466 g          739 t
ORIGIN      
        1 ctagataatt tggagtaaat ttattttctt caacaaatct gtctactctg cctgcatcat
       61 atttcttttg ttcagcggtg tatgtatggt tattatcatt tgttatagct tcagatctat
      121 ctagtcgaaa tggtttaacc aaattagggt tattgaacag tcgaagttac taaattattg
      181 atatctaccg gagtattaga agatggagca aaattgggtt ggccaggagc taaggcatta
      241 aattccaaga gcacactttg ggcatatgaa tttccagcca gtaattctgc agatatacaa
      301 aggtagactt ctaaggtcaa tttgaggatg gtttgcaata taaaggagga cgtagctaca
      361 ttagaatcga aaatttggta ttaacgaatc aaaaggttgc agttgttagt ggtagttcaa
      421 ctggcattgg atttgaaacc tgtttgctgt ttgctcgcag tggaattcgc acttatgcta
      481 caatgagaga tttaactaag gctcatttaa ttaaagacat tgtacaaaaa gaaaagattc
      541 cactaaaggt catccaaatg gatgtagata aagatgattc ggtggcagaa gcattcaagc
      601 aaataggtaa agatgacgat tatggtagaa aaatgagagt ggacattttg gtaaacaacg
      661 ccggctttgg gctatttggt gccttagaag atcaaagcat tgaggatatc aaaaaacagt
      721 ttgaaacaaa tgtgttcgga gcaattagaa ctatacagca agtacttcct ataatgaggg
      781 atcaaagaag tggggttatt gttaacattt cctctctagc aggatatatt ggatttcctg
      841 cgtcatcagt ttataatagc acaaagtttg cgttagaagg attgagtgag tctttagcat
      901 atgagataga accatacgga attagcgtag tactcattga accaggtgta attaacacca
      961 attttgtaga aaagattatg ataccgggta atactcgatc gatttcatcg tatctattgt
     1021 catcatcatc atcatcttta tctccttcta ctacatcacc aaaagtaact tcttctctct
     1081 cgacaattgg tagtgacagt aatatacact catacaattc taaatctgac agagaaatta
     1141 ccaaatatgc tcatgtggta gaaaggtttc tatctcatta ctatccggcc atgagaaatg
     1201 caccatctcc aaaggaagtt gccaaagtgg tacttgaaag cattaatgat tcaatagttt
     1261 ccacgaggca aggagctaat aataatttgt ttagataccc tgttggtgag gatgcaaagt
     1321 tgtatgcaga tgcaaaaagg aaaatgagtg attctgaatt acattctttt gtagctaaaa
     1381 ggatactctc ataagattag tttagcctcc gtccagctga aataatattt tgaattgata
     1441 acgtaaagac gaaggaattg caaggtgtaa tggatagata aatagataaa gagatgtaca
     1501 gacgccttct attacgtgcc agcagaatga cttctacaac tttaaccaca caatcaaggg
     1561 ttcatctatt cattttgaat ttatgttgtt gttgttggtt atgattctcg catcatcaaa
     1621 tatgcaaact cttttctcac gcttgagtct tcaaccgaaa aagaatgttt attagcatac
     1681 catttttgtt atgtatatcc atggattatg acaaactgtg taaggatata cttatcctag
     1741 atccaaaggt tcgctttgct ggtgtatgcg atgagagtgg cgagaccaag tatggaggtt
     1801 ttcgtgaagg tataaatcat cttctttcac cagatgatac taaaaaagca aatttacaag
     1861 cattagcgag atggggattg cgtaactcac ttgctccgaa aattggtaaa ggaaaatatg
     1921 cgatggctga atatgaaaaa gtgaaacgta taacattgcc attagaaaac tatcatttac
     1981 ttttgataac cacagagatt gatgccgatc atatcaacat tatagataat gctcttaagt
     2041 tgttaaggag ttgagctaag gttagtcata ttggctagag tattcctagt gaaacaaagc
     2101 ctgacaagct gcttatagga aaattctttc acacatagta ctatgcgtcc aagaatatag
     2161 aaactactag agatcttgat tcaggaattg gctttgtagt cttgttcttt cgattgtcat
     2221 tatcatttgt tattacattt ccatggcttg attgattttt tatagaaatg ttgcttatgt
     2281 ccctaaggga catccttaat tcttttgcaa tgtcgcgagt acttttg
//
LOCUS       DASQSJ010000435         2761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_551415, whole genome shotgun sequence.
ACCESSION   DASQSJ010000435 DASQSJ010000000
VERSION     DASQSJ010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551415"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1110
                     /locus_tag="VE223_08475"
     CDS             <1..1110
                     /locus_tag="VE223_08475"
                     /inference="COORDINATES: protein motif:HMM:NF038049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SelD-related putative sulfur metabolism protein"
                     /protein_id="HZC21665.1"
                     /translation="GEDPILLSGALQKFLKCFHSKTMIRKMTATLTAYPEAQWVLLDY
                     IESHRGNKVGYITASNSATQITDPTQRPESEIHSNIALTTAMENLNLLGCTSGFKVFP
                     IYDAPTEETLDKIRKNLDAFTSRYNLAMDDYSSLKIGKLFFGATAIANTLKELPTRYD
                     QVEEGMQIIITNKFGTMPAVSLYMLTEMDHNNLAKLDQNNISWNDLSSAKDEAIKNLS
                     EPHFSFGKIISRYCPDFGTTFDKHAHITAVYPVTTDGIFAISKFAGLTNSHVVIDDLP
                     IKYEEIAKFATKEFLIENATASSNGCHLIVATKDLASSIIADLRKHNFEPAIIGFIAK
                     KGRPFVAIEKDIGQYVASKAKLAKLNPIVQTETDL"
     gene            complement(1384..1509)
                     /locus_tag="VE223_08480"
     CDS             complement(1384..1509)
                     /locus_tag="VE223_08480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21666.1"
                     /translation="MTDLFAKGLEGFVDVIVADLLSIERRDHFSHPVLTLPSKYN"
     gene            1652..2047
                     /locus_tag="VE223_08485"
     CDS             1652..2047
                     /locus_tag="VE223_08485"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HZC21667.1"
                     /translation="MIKNKKAVNLYSRSDVTRIMDHLEANQFDNLLSSGEKFVVMFYA
                     DWCPFCQRFKPVFESVTPKQSKSAISYKTYGAKVNDDENPLWDRFSINAVPTIIAFDK
                     GDIISRRDAKMGAGLNKSDLDSLLEELEE"
     gene            complement(2553..2657)
                     /locus_tag="VE223_08490"
     tRNA            complement(join(2553..2587,2619..2657))
                     /locus_tag="VE223_08490"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2620..2622),aa:His,seq:gtg)
BASE COUNT          944 a          499 c          499 g          819 t
ORIGIN      
        1 ggtgaagacc cgatattgct gtcaggagcg cttcaaaagt ttctgaaatg ttttcattca
       61 aaaaccatga taagaaaaat gactgcgact ctaacagcat atcctgaagc ccaatgggta
      121 ttgctagact atattgagtc acacagaggc aacaaagttg gatatattac tgctagtaat
      181 tccgctaccc aaataacgga tccaacccaa aggccggaat ctgaaattca tagcaatatt
      241 gcattgacga ctgcaatgga aaatctaaat cttcttggat gcacatcagg gtttaaagta
      301 tttcctatat atgacgctcc aactgaggaa acgctggata aaattagaaa aaacctggat
      361 gcatttacct cacgatataa cttagctatg gacgattata gctctcttaa gatcggcaaa
      421 ctcttcttcg gtgcaactgc gatagcaaat actctgaaag agttgcctac gagatacgac
      481 caagttgaag aaggaatgca gattattatt acaaacaaat ttggcacaat gccggcagta
      541 agcctttata tgttaacaga aatggatcat aacaacctag ccaaattgga tcagaacaat
      601 atttcatgga atgatctttc ttctgcaaaa gatgaggcta taaaaaatct aagtgaacct
      661 catttttcat ttggcaaaat aatttcaaga tattgtcctg attttggtac aacgtttgac
      721 aaacatgcac acataactgc tgtctatcct gtcacaactg atggcatctt tgcaatatca
      781 aaatttgcag gtctaacaaa ttctcacgta gtaattgacg atcttcctat aaagtatgaa
      841 gaaattgcta aatttgcaac gaaggagttt cttatagaga atgcaacagc ttcctcaaat
      901 ggttgtcatt taatagtcgc aacaaaagat ttagcaagtt caattattgc agatttacga
      961 aagcataact ttgaaccagc aataatcgga ttcatcgcaa agaaaggaag gccctttgtg
     1021 gccattgaaa aggatatagg tcaatatgta gcttccaaag caaaacttgc taaattaaat
     1081 cccatagtac agacagaaac agacctttga aatatgcaaa agacttgaag atactgacac
     1141 ctttccgaac aaagagtgca attttctcaa aatcaaacaa gaggagatat tcctagaaag
     1201 tagttataat atcacaatcg cctagcagac attaccactc ctttttatct agatttggag
     1261 taggaagaga tgctaatgct gatgttgatg atgatacttt ttaagcatac actattgagg
     1321 tattgccaaa acaggagata aaatagtcca aatgcaagtg ctactataat aatcatgtgg
     1381 tccttagtta tattttgatg gcaatgtcaa tacaggatgt gaaaaatgat ctctcctctc
     1441 gatgctcaac aaatcagcaa ctataacatc aacaaaacct tctaatcctt ttgcgaaaag
     1501 gtcggtcata gatcaaacaa tctctaatgc cgtcaataac atcatttcct ctgcttcatt
     1561 atcgtttgga ggttattcca gataatgcac atttggtatg aatttggcta tttactaagt
     1621 aacagtgttt ccctttggag gaaaaagaca attgatcaaa aacaaaaaag cagttaattt
     1681 atacagtcgt tcagatgtta caagaataat ggatcatctt gaagcaaatc aatttgataa
     1741 cttgctgtca tcaggggaaa agtttgtagt aatgttttat gcagattggt gtcctttttg
     1801 ccagagattt aaaccagttt ttgaatctgt tactccaaag cagtcaaaat ctgccattag
     1861 ttacaaaacg tatggagcca aggtgaatga tgatgagaat ccactatggg acagattctc
     1921 aataaatgct gttcctacca ttattgcttt tgacaagggt gatattatct ctagaaggga
     1981 tgctaagatg ggggcaggtc taaacaaatc ggatcttgat tctctattag aggaattaga
     2041 agaatagcta tgtggcctat tattctattg aaaaatgaaa gctcagacga gtgagagaca
     2101 tgaattctcc tagaactagt aggcaaaacc aagtttgagc ctatcacttt agagcaaagt
     2161 ctatctcgat acagattttg aaaacagggc tatcccagtt aatgatgtta gtaattattt
     2221 agctcagaat gatgataatt ttagaagaga tcaatattga aatattggat tcactaggga
     2281 acgttgtcga aatacaactc cagcaatgtt gctggacata tattgtgata tttcaatagt
     2341 gtatcttatt agatatgaaa ttacctattg tatcccgcca ctcagttgga gtgaagtgat
     2401 tttgtccctc aaatactcta ctccttccta tcatgattgt atttattcta tgttcttcgc
     2461 cagtacatta accaaaatac atctgcaaca tgtgagcctt agaaaatcaa ccttcatcat
     2521 ccagaattaa aagctagtca attttgtgat agggccttcg gagggatttg aaccctcctc
     2581 aagcggtttc tttcgataac tagtttagca gtagtcgtcc acagccgcct atactcgcca
     2641 ggctatacta cgaaggccaa ccaatatttc tgcagaaata accgtatata attgtagata
     2701 tattttttgt ggctgtaata gatcattaat ataaatccgc cttacaataa ataattagat
     2761 t
//
LOCUS       DASQSJ010000436         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_551416, whole genome shotgun sequence.
ACCESSION   DASQSJ010000436 DASQSJ010000000
VERSION     DASQSJ010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551416"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1470
                     /gene="argH"
                     /locus_tag="VE223_08495"
     CDS             <1..1470
                     /gene="argH"
                     /locus_tag="VE223_08495"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HZC21668.1"
                     /translation="TELDRYAFKFLSSISEDSVILHYDILGSEAHCIMLYEIGFLTLT
                     DLKKILQALEEVKINPSVLHTDDYEDIHESLEAFVIKDAGNDSGGKMHTARSRNDQVI
                     LDIRMKVRDDINDICNAIIDLINSLLEKANENKETVMPMYTHLQQAQIGTFSHFLLSY
                     GDALFRDMDRLYVLYGRINKSPLGACAIGGSSISIDRMKTAVLLGFDGLIKNSVDATS
                     SRDSFIEFASALSILMITLSRMAEDFIIWSTFEFGYIDVADKYSSTSSAMPQKKNPDV
                     LELIRAKAALMTGNLVAMLSTVKSLPSGYNRDLQDLKPTLWKMSTTTLESLKIMNGLV
                     KSLYIHREKMLEAARNSYAISFDIAEQLVVQMGIPFRSAHKVVGALVEKAVSKNNIAF
                     TMLQKEDVEAVLNNIKSSLQAEELMQIIREMTPIRSLELRISSGSPNPKEQDTAISFS
                     YRKLAGYKEGVSKRKRCIAAAFDNLGKSTKNYLNAKTSS"
     gene            complement(1826..1917)
                     /locus_tag="VE223_08500"
     tRNA            complement(join(1826..1888,1908..1917))
                     /locus_tag="VE223_08500"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1862..1864),aa:Gln,seq:ttg)
BASE COUNT          681 a          340 c          394 g          623 t
ORIGIN      
        1 actgaacttg acagatatgc attcaagttt ctatcttcaa taagtgaaga cagtgttata
       61 ttacattatg atatactagg tagcgaagcc cattgcatta tgttatatga gattggattt
      121 ttgactctga ctgatttaaa gaaaattttg caagcattag aggaagtaaa aataaacccc
      181 agtgttctgc atactgatga ttatgaggat attcatgaat cgcttgaagc attcgtaata
      241 aaagatgcag gaaatgactc tggtgggaaa atgcatactg cacgttctag aaatgatcag
      301 gtaatacttg acatacggat gaaagtcaga gacgatatta atgatatttg caatgcaatt
      361 atcgatttaa ttaattcact attagaaaaa gcaaatgaaa ataaagaaac tgtgatgcca
      421 atgtatacgc atttacaaca agcacagatt ggaactttct cacactttct attgtcatat
      481 ggtgatgctc tcttcagaga tatggatagg ctctatgttt tatatggaag aatcaataag
      541 tcccccctcg gcgcatgtgc aataggcgga tcaagcatta gtattgatag aatgaaaact
      601 gcggttctat tgggttttga tggattaata aaaaattctg ttgatgccac ttcttctcgc
      661 gattcattca tagaatttgc ttcagcactt tctatcttaa tgattacatt aagtaggatg
      721 gcagaggatt ttataatctg gtccacattc gaatttgggt atatagacgt tgctgacaaa
      781 tatagttcaa catcaagtgc aatgccacaa aaaaagaatc ctgacgtgtt ggaacttatc
      841 agagcaaaag cagcattaat gacaggtaat ttggtagcaa tgttgtcaac agtcaaatcc
      901 ctgccatcag gttacaacag agatctacag gatttgaaac caactctatg gaaaatgtca
      961 accacaacac ttgaatcatt aaaaataatg aatggcttgg tgaaatcact ttatatacac
     1021 agggagaaga tgctggaggc agcaagaaat agttacgcaa tttcatttga catagctgaa
     1081 caactcgtgg tgcaaatggg cataccattt cgatctgctc acaaggtcgt tggagctctc
     1141 gttgaaaagg ccgtaagtaa gaataatatt gcgttcacta tgttgcagaa agaagatgta
     1201 gaggctgtat taaataatat taaatctagt cttcaagcag aagaactaat gcaaattata
     1261 agggagatga ctcccattag atcgcttgaa ttaaggatct catctggatc acctaatcca
     1321 aaagaacaag acactgctat cagcttttcc tatcgtaagc tagccggtta taaggaagga
     1381 gtgtctaaac gcaagagatg tattgcagca gcatttgata accttggaaa atccacaaaa
     1441 aattatctta atgctaaaac atcctcgtga taaaagatgg ataatgaatg aacaaattag
     1501 tggcatgacg gattcagtat gctatatata caaaaagatt agaaaactac cttggactag
     1561 tagtacattt ttgtagtatt attgcgtata ggagggtaat tttgatatag gttagtacga
     1621 tgttaacaca tcaaaaatgt ttgatatacg ttttttgata tatttttaac aatgtcatat
     1681 gagtcaaata catacatagt ttctttacat gactatgcct gtgtaataat aatcttgcat
     1741 gataattctg gttactattt ggcgccgtct tgttgtaata ttattgtggt attacttact
     1801 gatggtatac catgatataa aaggatagcc cggcccagat tcgaactggg gtcaaaggct
     1861 ccaaaggcct ctatgcttgg ccactacact cggcggaaac ttttcctcca ccgggcttcc
     1921 gggcgtattt ccgtatatat tttactatct ttataatctt actcacgaca tttctaaaaa
     1981 tggtaatatc ctgtctacag gatcatccat ctcatcaaga atgagcttgg ctttcttt
//
LOCUS       DASQSJ010000437         2514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_317749, whole genome shotgun sequence.
ACCESSION   DASQSJ010000437 DASQSJ010000000
VERSION     DASQSJ010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_317749"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..461)
                     /locus_tag="VE223_08505"
     CDS             complement(<1..461)
                     /locus_tag="VE223_08505"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HZC21669.1"
                     /translation="MQLRQPVVVVLGHVDSGKTSLLDRVRGTAVQAREIGGITQHIGA
                     SFFPIETIKDITGPLYQRLSKSETQIPGLLVIDTPGHEVFANLRMRGGSAADLAIVVA
                     DVNKGFEAQTIESIEILRKRKVPFVVAVNKIDMVTGWRKNYSQFISEEMKK"
     gene            complement(475..879)
                     /gene="ndk"
                     /locus_tag="VE223_08510"
     CDS             complement(475..879)
                     /gene="ndk"
                     /locus_tag="VE223_08510"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HZC21670.1"
                     /translation="MATEKTLIVVKPDGFKRCLTGKILSRFEDKGFKIKDLKLFNFTQ
                     QKAEQFYSAHKAKSFFNELVSFISSGTVVACILEGNNAINTVRIMIGSTNSFEAAAGT
                     IRGDFGLGLTDNVIHASDSSESFIKESQVIFS"
     gene            complement(912..1124)
                     /locus_tag="VE223_08515"
     CDS             complement(912..1124)
                     /locus_tag="VE223_08515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HZC21671.1"
                     /translation="MSKTATSLRNCSFCGRHIVTGQGTMLVRNDGSIQWTCSDKCKKN
                     LRKLKRDPRRLKWTAKYVKGGIKVKK"
     gene            complement(1156..1371)
                     /locus_tag="VE223_08520"
     CDS             complement(1156..1371)
                     /locus_tag="VE223_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HZC21672.1"
                     /translation="MSKTVEEKVVPAEVIQIVGRTGIAGEVIQVRVKVLEGKDRGRIL
                     TRNVKGSIRMNDILMLRETEREARKIK"
     gene            complement(1384..1767)
                     /gene="rpl7ae"
                     /locus_tag="VE223_08525"
     CDS             complement(1384..1767)
                     /gene="rpl7ae"
                     /locus_tag="VE223_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HZC21673.1"
                     /translation="MSKPYYVKFETPKDLVNAVYEAVRLAKQSGRVRKGTNETTKAIE
                     RGSSRLVVIAEDVEPPEVVAHLPILCDERNAAYVFVPSKQQLGTSLGIDVGSAAATIL
                     DAGEAQNIVEQVVDSIANMKGNKKG"
     gene            complement(1850..>2514)
                     /locus_tag="VE223_08530"
     CDS             complement(1850..>2514)
                     /locus_tag="VE223_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HZC21674.1"
                     /translation="AYDGDGDRSIFCDEKGTIQWGDRTGTLLVKHLLKNKHKGAEIVC
                     PINTTMALSLIAEQAGSKTIYTKVGSVEVSREMVRRKSYIGLEENGGFMYGKLNEVRD
                     GIMTTALLLDMLASSKERFSQLISSLPKIFQYKSKFRCPTKQVADEIVNACLKHGSPR
                     KVETLDGAKIWVDEETWIMVRPSGTEPLVRMYAESTDKSLLDSKVREYSTIVGSKIND
                     RI"
BASE COUNT          644 a          587 c          416 g          867 t
ORIGIN      
        1 tgctttttca tttcctcgct aataaattgg gaatagtttt tgcgccagcc tgtaaccatg
       61 tcaattttat ttactgcgac aacaaatggg acctttcttt tccgtagaat ttctatgctt
      121 tcaattgtct gtgcctcaaa acctttgttg acatcagcaa ctacaattgc tagatccgct
      181 gcagaacccc ctcgcattct aagatttgca aagacttcat gtcctggcgt atctataaca
      241 agtagtcctg gaatttgagt ttcagatttc gaaagtcttt ggtacagtgg cccagtaata
      301 tccttaatcg tttcaatagg aaaaaaactt gctcctatgt gttgtgtaat acctccaatc
      361 tctcgtgctt ggacagcagt accacgtact ctgtccaata atgatgtctt ccctgagtct
      421 acatgaccca acactactac tactggttgt cttaactgca cttaactact gcacttaact
      481 aaaaatgacc tgggactctt ttatgaagct ttcagatgaa tctgatgcat ggataacgtt
      541 atctgtaagg ccaaggccaa aatcaccacg aatagtcccg gctgccgctt caaatgaatt
      601 ggtggatcct atcataattc ggactgtatt aattgcattg ttcccttcta gaatacaagc
      661 taccaccgtg cccgaggaaa taaatgatac cagctcatta aaaaaagatt ttgccttgtg
      721 tgcagaataa aattgctcag ctttttgttg tgtaaaattg aacaatttta agtccttgat
      781 tttaaatccc ttatcctcaa acctagagag gattttcccg gtcaagcagc gtttaaagcc
      841 gtcgggctta acaactatta gagttttttc ggtagccatg actatttgta tatataaaaa
      901 atagtgactg actacttctt taccttaata ccgcccttta catatttagc ggtccacttc
      961 aatcttcgag ggtcgcgttt caatttacgc aaattcttct tgcatttgtc tgaacaagtc
     1021 cactgtatcg aaccatcatt tctaacaagc attgttcctt ggcctgttac aatatgtcta
     1081 ccacaaaaag agcagtttcg tagagatgta gctgttttac tcatatgcta gtatatctcc
     1141 tacagatact ttcaatcact ttatcttgcg ggcttcgcgt tctgtttccc taagcatcag
     1201 gatatcattc attctgatcg atcctttgac atttcgtgtc agaatacgcc ctctgtcttt
     1261 gccttctagg acctttaccc tgacttgtat cacctcccct gcaatgcctg ttctaccaac
     1321 tatttgaata acttctgcag gaacaacctt ttcttctacc gtcttgctca tcttaggcca
     1381 tcatcatcct tttttattac ctttcatatt tgcaatagaa tcgacaacct gctccactat
     1441 attttgcgcc tcgccagcat ctaatatagt tgctgctgca gagccaacat ctattccaag
     1501 cgatgtacct aactgttgtt tacttgggac aaaaacataa gctgcgtttc tctcatcgca
     1561 gagaattggc aaatgtgcta ctacttctgg tggctccacg tcttctgcaa taacgactaa
     1621 tctacttgag ccgcgttcta tcgcttttgt agtttcattg gttccttttc ttactctgcc
     1681 actctgcttt gccagccgta ctgcttcata aactgcgttt acaaggtctt taggagtttc
     1741 aaattttaca taatatggtt tactcatagt ctattttgtc acccattggg atcatcttaa
     1801 tacttcttta agagaagaac aggcgtttta aaagtgttgt ctataagttt tagattctat
     1861 cgtttatttt gctcccaact attgtactat attctcgaac ttttgaatcc aacagcgatt
     1921 tatcggtgga ttctgcatac atcctaacca gtggttctgt tccgctcggc cttaccatga
     1981 tccaagtttc ttcatctacc catatcttgg cgccgtctaa ggtttcaacc tttcgaggac
     2041 taccatgttt caagcatgca ttcactatct cgtcagcaac ttgctttgta ggacatctaa
     2101 actttgactt gtattgaaat atctttggta atgaggatat caattgtgaa aatctttctt
     2161 tacttgaggc cagcatatcc aataggaggg ccgtagtcat tatgccatcc cttacttcat
     2221 tcaactttcc atacataaat ccaccattct cttctaagcc aatgtaagat ttacgcctaa
     2281 ccatttctct tgaaacttct acacttccaa cttttgtata gattgttttt gaacctgctt
     2341 gttctgcaat tagtgaaaga gccattgtgg tgtttatcgg acaaacgatc tcggcgcctt
     2401 tatgcttatt ttttagtaaa tgtttgacaa gtaaagtacc ggtcctgtct ccccattgga
     2461 ttgttccttt ttcgtcgcag aatatgctac ggtcaccatc gccatcgtaa gcta
//
LOCUS       DASQSJ010000438         6322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_433756, whole genome shotgun sequence.
ACCESSION   DASQSJ010000438 DASQSJ010000000
VERSION     DASQSJ010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_433756"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VE223_08535"
     CDS             <1..396
                     /locus_tag="VE223_08535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21675.1"
                     /translation="AARRIHSELAKAGMHGLDVQSLHEKLAFEYPVLLEAIKKLEKLK
                     RIEWLNDRTIIIVDSLKKSEGKVYDIYIEKIVRGKALAIINEKWHARLNNYDYEGPRD
                     VLRSGSQFKAIADLYRENGVLNIRIKQIV"
     gene            complement(450..524)
                     /locus_tag="VE223_08540"
     tRNA            complement(450..524)
                     /locus_tag="VE223_08540"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(487..489),aa:Arg,seq:tcg)
     gene            694..1881
                     /locus_tag="VE223_08545"
     CDS             694..1881
                     /locus_tag="VE223_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HZC21676.1"
                     /translation="MKVSERTYGVEYAIRDIISYARAYESTGKQITYLNIGDPVKYDF
                     VTPEHIKQALIDAVNNNQNYYTESEGLFELREAIVEKESQKGLSVTEEDVLVTNGVSE
                     GLDMIMASVVDPNTEVLMPGPYYPPYASYVKFYGGKPIEFKLNDDGGPDLEDLESKIT
                     SRSNAICIISPNNPTGEVFDRRSLQQLIEVATEHELYIICDEIYDKIVFDDQFTGIGK
                     VAKDAPLILLNGFSKGYLMTGWRCGYICTNSNSRKLDGIRKNVPKLARVRISANLPVQ
                     IAAVQALRGPQDHIKEMVEKLRRRRDYVVKRLNAIEGISCKIPQGAFYVFPEIDLDSR
                     WKDDLQFVVDLLQKTGVLTVHGSGFGTAFGAGHFRIVYLPPEEVLEQAMDKLEYFVYN
                     LGK"
     gene            1915..2835
                     /gene="htpX"
                     /locus_tag="VE223_08550"
     CDS             1915..2835
                     /gene="htpX"
                     /locus_tag="VE223_08550"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HZC21677.1"
                     /translation="MSIPKTPSWQRRDAGLTARIILSFFILALLYIGFLSALAYVGLD
                     FVSITVIATIMILAQWYFSDKIVLWSSGAKKVTREQFPELHDIIERVVARNNLPKPKI
                     AVINTNMPNAFATGKGPRSSVVVVTTGLMDLLDTEELEGVLSHELTHIRNRDVLILTL
                     ASLFSTVAWYLMQFGFYGGMGYGYGYGYRDRNNSGAGAMIIVLVVAMLTWVISFLIIR
                     AISRYREFAADRGSAQMTGKPVKLANALMKISGNMRQIPTKDLRQVEGLNAFFIIPAI
                     SGSTIGNLFSTHPPVEKRIQKLMEMEASMG"
     gene            2832..3416
                     /locus_tag="VE223_08555"
     CDS             2832..3416
                     /locus_tag="VE223_08555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21678.1"
                     /translation="MSFFRKLRKSINNNKPRTDSDAIFSLSSAYITLETKLGLKSTGR
                     SALSLKSADGMHFTEMKEGIQRFLDISKPDIELKNRMVVDSYGYLWLVLEGKSMADIL
                     TGISAIGDTVEERGFSKQLLVAIFEFKIEKDNNEVTQYLIYNYKFNKFYPFVPFGQKT
                     RSTEDEMKIMAAIVDEVPFEKDMTLWYPLWDLPI"
     gene            complement(3413..3895)
                     /locus_tag="VE223_08560"
     CDS             complement(3413..3895)
                     /locus_tag="VE223_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21679.1"
                     /translation="MNRTKPVKKNARTKKSKKAVKKQPSRSIKKTNKSNNKKVTGKLK
                     ISRGKTATEASTADSERVRKNKIVRIMGEGQFVVDDKTLNRLNKIDNSLIQLVSNDIP
                     DNTEFKKRLVELVDIVEQSGKRLDPKRIIPSDIILPSVDLSIDEAKKLFKGDGVIPEL
                     "
     gene            complement(4048..4791)
                     /locus_tag="VE223_08565"
     CDS             complement(4048..4791)
                     /locus_tag="VE223_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HZC21680.1"
                     /translation="MNRISTVVKQKVNTLLDRYEDPKEALDYSYVKQTEMLNKLRRNI
                     AEVITAKKRLEMQKAKLWDNIHTLDEQSQRAIDANRDDLARQALERKNANMLQLQTLD
                     KQITDMKSEQQKLEDTERRLSAKVEEFNSKKEVIKAQYSAAEAQVRIKESVTGISEEM
                     TDVGIAMNRAEDKTEKMKAKSQALDEMIDSGVLTDYTSNKDDTIERELEQTSTQRSVE
                     EELAKLKAEREKKKKLAGGKDEEEVQVSQ"
     gene            complement(4905..5219)
                     /locus_tag="VE223_08570"
     CDS             complement(4905..5219)
                     /locus_tag="VE223_08570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21681.1"
                     /translation="MGYNRTKRDAGGENHSGKNWMSAMGILFIVMAIIIALRNLYFVS
                     TYYSLGFYIDNYTNGQINNEKFVIAMIIAGVILLYWGYFKKKEDHGLHGEQEWRRFND
                     VK"
     gene            complement(5224..5898)
                     /gene="npdG"
                     /locus_tag="VE223_08575"
     CDS             complement(5224..5898)
                     /gene="npdG"
                     /locus_tag="VE223_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent F420 reductase"
                     /protein_id="HZC21682.1"
                     /translation="MRIGIVGGTGGMGEGFALRWCFKHDVTIGSRELQRAKEAAEKYT
                     KVARDAYGNSMIGNIIGADNFALAADSDLLILSIPYEHIENTCGRLTNKIRSDCIVVS
                     PIVPMTRTDLGFIYTPLEEGKKPAAYLVAENLPPRSRVVSAFHTISEVKLRNIKQHLD
                     ADTFVCSDDQNAVAVLNNLISEINGLRSIYLGPLSMTYQAEILTPMLLNAAKRNKMKN
                     LGIRLV"
     gene            6063..>6322
                     /locus_tag="VE223_08580"
     CDS             6063..>6322
                     /locus_tag="VE223_08580"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HZC21683.1"
                     /translation="MNLPLAIFMRHGQADNNVNRILVGRHIESHLTEYGKQQVLDTAE
                     HLRNLPIEKVYVSPVIRTVETAKIVCKTLGMNYEVDERLYEI"
BASE COUNT         1827 a         1191 c         1224 g         2080 t
ORIGIN      
        1 gctgctagac gaattcacag cgaacttgca aaagctggaa tgcatgggct tgacgttcaa
       61 tcacttcacg aaaagcttgc tttcgaatat cctgtgctac ttgaagcaat aaagaaactt
      121 gaaaagctaa agagaataga atggttgaat gatcgtacaa tcataatcgt tgatagcttg
      181 aaaaagtctg agggtaaagt atatgatata tatattgaaa aaatagtccg aggtaaagcg
      241 ctagcaataa taaatgagaa gtggcacgcc agattgaata attatgacta tgaaggacca
      301 agagatgttc ttaggagtgg atcacagttc aaagctattg cagatctgta ccgtgaaaac
      361 ggtgtattga acataagaat caaacaaata gtctgacact tattacaagc agctgctgct
      421 acaataaatc tgtctaatct ctgaaaagcc gagcccggag ggcttcgatc cctcgatctg
      481 tggttccgaa gaccaccgcg atatcctaac tacgctacgg gcccatgcaa aatttcttta
      541 tgggttgata tatatatcaa ttgaacaacc aataggccag aaaatatact caagagcagt
      601 gtataattga cttggtattt gagacattta gtaaccatac aatagcatat acatataaca
      661 atttatctag gtaatatttc ctgtagataa taattgaaag tctctgagag aacctacgga
      721 gtagaatatg caattcgtga tatcatttct tatgcgagag cgtatgaaag cactggaaaa
      781 cagataacgt atctgaacat tggagatcca gtcaaatatg attttgtaac acctgaacac
      841 atcaaacaag cattaattga tgctgtcaac aataaccaaa actattatac agaatcagaa
      901 gggctctttg agctaaggga agctatcgta gaaaaagaat cacaaaaagg gctctcagta
      961 acagaagaag atgtcttggt aactaatggg gtctcggagg gtcttgatat gatcatggct
     1021 tcagttgttg atcctaatac tgaggttctt atgcctggac catattatcc accttatgca
     1081 tcatacgtta aattttatgg aggtaagcct atagaattca aactaaatga tgacggtgga
     1141 cctgacctag aagacctgga atccaaaatt acttccagat ccaatgcaat atgtataatt
     1201 agcccaaaca atccgaccgg cgaagttttt gatcgcagaa gcctgcaaca actaatagaa
     1261 gttgctaccg aacatgagct gtatataata tgcgatgaaa tatatgataa aatcgttttc
     1321 gatgatcaat ttacaggtat tggtaaagtg gcaaaagatg ctcctttgat tctccttaat
     1381 ggtttttcta aaggatattt gatgactggc tggcgatgtg gttatatttg tacaaatagt
     1441 aattcaagaa aactggatgg tatacgaaaa aatgtaccaa aacttgctcg agtacgtata
     1501 tctgctaatt tacctgttca aatagcagca gtacaagcgt tgcgcggacc acaagatcat
     1561 atcaaagaga tggtagaaaa attacgtaga cggagagact atgtggtaaa acgtctaaat
     1621 gctatagagg gaatttcctg taaaatacct caaggtgcct tttatgtatt tccagaaatc
     1681 gatcttgatt cacgatggaa agatgacctg caatttgtag ttgatctact acaaaagacc
     1741 ggagtcctaa cggtacatgg atcaggattt ggtaccgcct ttggggcagg tcattttaga
     1801 atagtttatc ttccacctga agaagtactt gagcaagcga tggacaagct agaatatttt
     1861 gtgtataact taggcaaata attaaaagtg gtttcagtat aaatataatc acatttgtct
     1921 attccaaaga caccatcatg gcagaggagg gatgctggcc tgactgctcg aataatactt
     1981 agcttcttca tccttgcact gctgtatata ggcttcctta gcgcattggc atatgtaggt
     2041 cttgattttg tttccataac cgtaattgcc accataatga ttttagcgca atggtatttc
     2101 tctgacaaga ttgtgctttg gagttctgga gcaaagaaag taacgaggga acaatttccc
     2161 gaattacatg acattataga gagagtcgtt gcgaggaata accttcctaa accaaaaata
     2221 gctgtaatca atacaaatat gcccaacgcc tttgcaacag gtaagggccc acgcagttcg
     2281 gtagtcgttg tgacgacagg tcttatggat ctattggata cagaagagtt agaaggcgtg
     2341 ctttcacacg agttaacaca catcagaaat agagatgtac tcattctaac acttgcaagt
     2401 ctattctcga cagttgcgtg gtatcttatg caatttggat tctatggcgg tatgggctat
     2461 ggctatggct atggctacag agatcgtaat aacagtggcg caggggctat gatcattgta
     2521 ctagttgtgg caatgctaac ttgggttatt agttttctga ttattcgggc tatatcgcgt
     2581 tatagagaat ttgcagcaga taggggctct gcacaaatga ccggaaaacc tgtaaagctt
     2641 gctaatgctt tgatgaagat tagtggtaat atgcgccaaa tacctacaaa agatttacgt
     2701 caggtagaag gattgaatgc attttttatt atccctgcca tatccggtag tacgattgga
     2761 aatctcttct ctacccatcc gccagtcgaa aagagaatac aaaaactcat ggagatggag
     2821 gcttctatgg gttgagtttc tttcgcaaac tcagaaagag tattaacaat aacaaaccaa
     2881 gaaccgattc ggatgcgatc ttttcacttt cttcggcata tattacatta gaaactaaac
     2941 ttggattgaa aagtactggt agatctgcct tgagcctcaa aagcgctgat gggatgcatt
     3001 ttaccgaaat gaaagagggt attcagcggt ttcttgacat cagtaaaccg gatattgaat
     3061 taaaaaatcg tatggttgtt gattcttatg gttatctttg gttagtcctt gaaggtaaaa
     3121 gcatggcaga tattctgaca ggaatatctg ctataggaga tactgttgag gaaagaggct
     3181 tttccaagca gttactcgta gctatctttg aatttaagat agaaaaagac aataatgagg
     3241 tgactcagta tttgatctat aactataaat tcaacaaatt ttaccctttt gttccttttg
     3301 gtcaaaaaac acgaagcact gaggatgaga tgaaaataat ggccgcgatt gtggatgagg
     3361 ttccatttga aaaagatatg actttgtggt atcctttatg ggatttgccg atttaaagct
     3421 ctgggattac cccatcaccc ttaaacagct tttttgcctc atctattgaa aggtctacac
     3481 ttggcaagat aatatcagat gggataattc gctttggatc tagtcgtttc ccgctttgtt
     3541 ctacaatatc taccagttca accagccgtt ttttaaattc ggtattatct ggtatatcat
     3601 tgcttaccaa ctggataaga gaattgtcaa ttttatttag cctatttagc gtcttatcat
     3661 ctactacaaa ctggccctct cccataattc tgacgatctt gttctttctg actcgctcag
     3721 aatctgctgt tgaagcttct gtagcggttt tccctctgga aatttttaac ttgcccgtca
     3781 ctttcttatt attgctcttg tttgtttttt tgatgcttct tgatggttgc ttcttgacgg
     3841 cttttttgct cttctttgtc cttgcatttt tttttacagg tttagtacgg ttcatgctat
     3901 acctccctat ttcacctatg ctgtccgttt ccttttattg aacctgggcc tttaactttg
     3961 ctgattcttc tttgctgcca tgactagcct actgtcagca atggctttga ttcctgttga
     4021 tcacagggat cctgtttgtt tttgttttca ttgggatact tgtacttcct cttcgtcctt
     4081 tccaccagca agttttttct ttttttcacg ttctgccttt aactttgcca attcttcttc
     4141 aactgaacgt tgtgtagaag tctgttctaa ttctctttca atagtatcat ccttgtttga
     4201 ggtgtagtca gtaaggacac ctgaatctat catttcatct agagcttgag attttgcttt
     4261 cattttttca gttttatctt ctgctctgtt cattgctata cctacatcgg tcatttcttc
     4321 tgaaattcct gtaacactct ccttaatacg aacctgagct tcagctgccg agtattgtgc
     4381 ctttatgact tctttctttg aattgaactc ttcaacttta gccgacaaac gtctctctgt
     4441 atcttcaagt ttttgttgtt ctgacttcat atctgttatt tgcttgtcta gcgtttgcaa
     4501 ttgcaacata tttgcattct tgcgctctaa tgcctgtctt gctagatcat ctctatttgc
     4561 gtcaatcgcc cgttgggact gttcatcaag cgtatggata ttgtcccaca gcttagcctt
     4621 ttgcatttca agtcgctttt tggcagttat tacctctgct atgttccttc gcagcttgtt
     4681 taacatctct gtttgtttga cataagagta atctagtgct tctttaggat cttcatatct
     4741 gtcgaggagg gtgttaacct tctgctttac aactgtggaa atacgattca ttaaacccaa
     4801 tatagttcat attataatag cttgatctct cctattaaat cttgattttt ttcaggtatg
     4861 tgtatagatt acttgcctcc tagtctcttg cattttgcgt ctgtctattt tacgtcatta
     4921 aacctgcgcc attcctgttc gccatgtagc ccatgatctt ctttcttctt aaaatagccc
     4981 cagtagagta ggattacacc tgcgattatc attgcgatta cgaatttttc attattaatc
     5041 tgtccattag tgtaattatc aatataaaat cctagagagt aataggtgct cacaaagtaa
     5101 agatttctta atgcaattat gatcgccata acgatgaaaa gaattcccat tgcagacatc
     5161 caattttttc cactatgatt ttctcctcct gcatctctct tggttctgtt gtaacccatc
     5221 ctgttacact aatctaatcc ctaaattttt cattttattt ctttttgctg cgtttagcaa
     5281 cattggagtc agaatttctg cttgatatgt cattgataat gggcctaaat agatagagcg
     5341 aagaccatta atttcagata ttaagttgtt taatactgcc actgcatttt ggtcatcgct
     5401 gcagacaaat gtatctgcat ctagatgttg ttttatattt cttaacttga cctctgagat
     5461 tgtatgaaag gctgaaacaa ctcttgatct tggtggtaaa ttttctgcca ccagatatgc
     5521 agctggcttt tttccctctt ctagcggagt gtaaatgaaa cctaaatcag ttcttgtcat
     5581 tggtacgatt ggagacacaa cgatgcagtc acttctaatt ttgttggtca gtctaccgca
     5641 agtattttcg atatgctcat atggtataga taatataagt agatctgaat ctgcagctaa
     5701 tgcaaaatta tccgcaccta taatatttcc tatcatgctg tttccatatg catccctggc
     5761 cactttagta tatttttctg cggcttcctt tgctctctga agttcccttg aacctatggt
     5821 aacgtcatgt ttgaaacacc atctgagagc aaaaccttca cccatgcccc cagtgccacc
     5881 aactattcct attctcataa gatgtagtca gttcgtaaat gagtagatat aaggttatca
     5941 acaaatggct gatactgctg atatctaata tataaaatag gctgtcggat attgatagga
     6001 agaatttttc ctagtcattg gtaggttggt gaaaattaat attataatta tacaaatttc
     6061 taatgaattt gccgctcgca atatttatgc gtcacgggca agctgataat aacgttaata
     6121 ggatcctcgt aggtaggcat attgaatcac atctcactga atatggcaaa cagcaggtcc
     6181 tggatacagc tgagcatttg aggaacttac ctatcgaaaa agtatatgta agtcctgtaa
     6241 taaggactgt agaaactgca aagattgttt gcaaaacctt gggaatgaac tatgaggtag
     6301 atgagcgatt gtatgagatt ga
//
LOCUS       DASQSJ010000439         3665 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_553623, whole genome shotgun sequence.
ACCESSION   DASQSJ010000439 DASQSJ010000000
VERSION     DASQSJ010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553623"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(12..320)
                     /locus_tag="VE223_08585"
                     /pseudo
     CDS             complement(12..320)
                     /locus_tag="VE223_08585"
                     /inference="COORDINATES: protein motif:HMM:TIGR01509.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
     gene            complement(550..717)
                     /locus_tag="VE223_08590"
     CDS             complement(550..717)
                     /locus_tag="VE223_08590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21684.1"
                     /translation="MLLIFMKVIVFDSDGVLVDSMSSHYKAWKTAFKEVSDIDVDERT
                     IYLLEVCAVLT"
     gene            complement(1037..1417)
                     /locus_tag="VE223_08595"
     CDS             complement(1037..1417)
                     /locus_tag="VE223_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HZC21685.1"
                     /translation="MKKILVVDDEPDVNLTLKVTLEDKGFTVDTFDDPLFALQNFRAG
                     RSYDLLILDVKMPKMNGFELYREMRKINDKVKVCFLTAGEMYYDDIYSDIFDGKNQFI
                     RKPIENEELIKRVNEILMAAEQAG"
     gene            complement(1882..2232)
                     /gene="trxA"
                     /locus_tag="VE223_08600"
     CDS             complement(1882..2232)
                     /gene="trxA"
                     /locus_tag="VE223_08600"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HZC21686.1"
                     /translation="MESQSKSKNVIHVTTNSWDTDILKSDLPVFVDFWAEWCGPCRMV
                     GPAVEQLSQTMSDKIKVAKLNVDENQEIAMRYGVRSIPSLILFKSGKEIARTVGAAPK
                     EAYQKFVEQHLSKV"
     gene            complement(2343..3206)
                     /locus_tag="VE223_08605"
     CDS             complement(2343..3206)
                     /locus_tag="VE223_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HZC21687.1"
                     /translation="MKTKLEDKKIDIPKIKNMDDNNNFRLPIICDTETLRTLMRKKAI
                     RIVDVRKAEDYQQEHIPTAVSLPLAVLLGKDTPSGIVDILENLGISDKMPVVIYDDTF
                     GALAARVAWTFQYVGHTNTALLEVTFSHWKSLGLEIDKKINTFPRIQHSLNINYDIHA
                     DASYVETAREQPNKILVDSRERLNFLTEHIPGAKNIPYTMVGSTNGSILRKPEEIKRF
                     VDNRGIPPDAEVITYCGSVGTLSGLTYYALKLAGVKNVKLYSKSFREWKSLGKPKEEF
                     KDANYWDLSAE"
     gene            complement(3203..>3665)
                     /locus_tag="VE223_08610"
     CDS             complement(3203..>3665)
                     /locus_tag="VE223_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HZC21688.1"
                     /translation="TDDSLRDSTIKISGCPNSCGQHEIATIGFFGGASRMGTAMAPTY
                     TMLFGGSAEEQGELGKAIMRVPAKRVIDTICKIVEIYKQERSGTETLKQWINKIVKGD
                     GTGSIKCIENIKATLTPLTQLPPIEQDPESYRDYGTDIKFSAKTARGECAA"
BASE COUNT         1035 a          767 c          563 g         1300 t
ORIGIN      
        1 caagatatag tctaatattt attagaccaa cctcgcacaa ctgtcgttgc agatcgggtt
       61 tccttaagaa ttctatcttc atcaattaca gatttaagat cctcaatagt cagtgcagta
      121 ttatttaata ctactataca ctgaattcct gccttatttg cagcttcgac tccgaggggt
      181 gcattctcaa ctatcagagc ttcagaagga gatattttga tcttgtctaa tgtcgccata
      241 aaagatgaag ggtcagggtt tccctgttca ctgtcttcag cagtaattag tgtatcaaaa
      301 acgtttttta ttttcaagac ttcccgagca ggatttcaac aacctttctt gcggatccgc
      361 tcactacagc cttttacaat cgtcacccag gttcacaatt aaatccctaa caccctcata
      421 tgctctaggc ggcgaagatt gcagcacatc tctgacaatt tcattttttc gctcactaac
      481 ttgatcagca acctctgctt actatcgctg ctgccattat gataattttt caattcaaaa
      541 accttcttat caagtcaata ccgcgcatac ctctagtaaa taaatggttc tttcatctac
      601 atcaatatcg gatacttctt taaatgcagt tttccaagcc ttataatgac tagacatgga
      661 atctaccaat actccgtctg aatcgaaaac aatcactttc atgaaaatta gtagcatgca
      721 agctaattat gaattcatcg gtgaaaggct ttcattccac tatcgttgcc tcgggtttga
      781 acaatggtta tgccgggtca tatttttgca caagtactga aggacagaga taaaatcagc
      841 aagcgagcga gctgtctttt caacggcata aaatagaagt gttttgcaat aaacgcctac
      901 catggacaac taaaaagaga ggtgaatgtt tatgaaccta cactaatgat atttcttgga
      961 agtaacaacc tatgtcagtt agagtaaaat aaagtaaaat aaaataaatt gataatatta
     1021 atgtacacat agatatttag cccgcctgtt ctgccgccat caatatttca tttactcttt
     1081 ttatcaactc ttcattttca attggcttcc taataaattg attttttcca tcaaatatgt
     1141 ctgaatatat atcatcataa tacatttcac cggctgttag aaagcatacc ttaaccttat
     1201 catttatctt cctcatttcc ctatataact caaatccatt catctttggc atcttaacat
     1261 caagaattaa aaggtcatac gaccgacctg ctctaaaatt ctgtagtgca aaaagaggat
     1321 catcaaacgt atcaactgtg aaccctttat cttctagagt tacttttaac gttaaattaa
     1381 catcaggctc atcatcaact accaagattt tcttcatgta atcatttact ccacgtatag
     1441 ttgtccttgc ttaatgggag actgaatgta aaggtatcct cttttttctg ccaccataac
     1501 cattagcatt attattatta ttatcatcct caacccatat tctaccacca tgagcttcga
     1561 ttatgctttt tgatattata tcatattata tattgatatc agaaataatt cctagaattt
     1621 ttggtctttg gctctattat tccattttgt ataataatat aagaaattat aatgactttg
     1681 taattgcctt cttgttctgt tttaattgta gtatgtgata tgtgttcgat cagccgtttg
     1741 ccagttattg ttatttctta ttctgttgtt ctgttgcttc cgctataaca gtagtcatat
     1801 cgtagtcatc ctaagacact acgcccggac tctttatagg taggtgtatt aagcacccta
     1861 ttttgttgta ttaagtgtca gctaaacctt tgatagatgt tgttctacaa atttctggta
     1921 tgcttctttt ggagcagcac ctactgttct tgcgatttcc tttccagatt tgaataatat
     1981 tagagaagga attgagcgca caccgtatct cattgcaatc tcttgatttt catcaacgtt
     2041 tagtttggct acctttattt tatcactcat tgtttgtgat aattgctcta ctgctggacc
     2101 aaccattctg catggaccac accattcagc ccaaaagtcc acgaaaactg gtaaatcaga
     2161 ctttagtata tcggtatccc atgagttggt tgtaacatga attacatttt tacttttgct
     2221 ttgactttcc ataacaattt aagatatgta tataatccta tataaaatgc attacaatta
     2281 cagaattggt ttagataata ccgttgtgaa aacgttctga atgtacccgt agtagtatta
     2341 ttttattctg ctgataaatc ccagtagttg gcatctttaa attcttcttt gggtttccct
     2401 aatgacttcc attccctaaa tgattttgaa tatagcttaa cattctttac tcctgccaat
     2461 tttaatgcat agtacgttaa gccagataat gttccaacac tgccacaata tgtgatgact
     2521 tcagcgtcag gtgggattcc tctgttatca acaaatcttt ttatttcttc aggtttgcgt
     2581 aatatactac cgttggtgga tcctaccata gtatatggaa tatttttagc gccaggaata
     2641 tgctcagtca aaaaattcaa tctctctcta gaatctacca atattttatt aggctgttcc
     2701 cttgcagtct caacatatga tgcatccgca tgaatatcat aatttatatt tagcgaatgt
     2761 tgtatccttg gaaaagtgtt gatcttctta tcaatttcca atcctaaact cttccaatga
     2821 ctaaatgtta cttccagcag tgcagtattt gtatggccaa catactgaaa agtccaagcg
     2881 actcgagctg ctaacgcacc gaatgtatca tcataaatga cgactggcat tttatccgat
     2941 atccctagat tctccagaat atccactatt ccagacggag tgtctttacc taataacacc
     3001 gcaagtggca gcgaaactgc agttggaatg tgttcctgtt ggtaatcttc cgctttacgc
     3061 acgtccacta tacggatcgc tttttttctc atcaatgttc gtaaggtctc agtatcacag
     3121 ataattggaa gtctaaaatt attattatca tccatatttt ttatttttgg gatatctatc
     3181 tttttgtctt ccagtttagt tttcacgctg cacattctcc tctggctgtc tttgcactaa
     3241 atttaatatc agtaccataa tctctatatg attctggatc ttgttctatt ggaggtaact
     3301 gcgtaagtgg agtgagtgtt gctttgatat tttcaataca ctttatgctg cctgttccgt
     3361 ccccctttac aattttatta atccactgct tcagtgtttc ggtcccagat ctttcctgtt
     3421 tgtatatttc aactatctta caaattgtat cgatgacacg ttttgctggt acacgcatta
     3481 ttgccttgcc taattccccc tgttcttctg cacttccacc gaatagcatt gtatatgttg
     3541 gagccattgc agttcccatt cttgatgcac caccaaagaa tccaatcgta gcaatttcgt
     3601 gctgtccaca cgagtttgga caaccactga tcttgatcgt tgaatctcta agactatcgt
     3661 cagta
//
LOCUS       DASQSJ010000440         3719 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U10906
            k141_434015, whole genome shotgun sequence.
ACCESSION   DASQSJ010000440 DASQSJ010000000
VERSION     DASQSJ010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37946383
            Sequence Read Archive: SRR5918970
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 17:10:10
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,726
            CDSs (total)                      :: 1,699
            Genes (coding)                    :: 1,689
            CDSs (with protein)               :: 1,689
            Genes (RNA)                       :: 27
            tRNAs                             :: 26
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 3 of 10
            Pseudo Genes (multiple problems)  :: 2 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434015"
                     /isolate="SMAG_U10906"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /lat_lon="25.2875 S 130.92864 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..976)
                     /locus_tag="VE223_08615"
     CDS             complement(<1..976)
                     /locus_tag="VE223_08615"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HZC21689.1"
                     /translation="MVSSINKNSYEKNIVLLRSAFREYYFKHSKIIEIPERVEEREFG
                     FMLFEAGMIRHLSFRNIGELLATLIKEVPSDVYCSNAYYRFPTYDMHEKQWMGADLIF
                     DIDAKDLHLPCELMHSYILCANCGEPQEIKTDVCIYCKTGKLNHVSIPCNKCNYGLKK
                     EVKHLIDLLISDLGIKEKTISIYFSGNNGYHIHISDKEFHRLDSQARSDIISYLIGND
                     MMTESIGIRKAEVSSDGFLVKFPKSGIMYGWRRRIAQKLGIDQASTTKLRNIVQQKGG
                     YSRFKTELLKMTKDMGVRIDPQVTMDVHRVFRMAGTINSKSGLTKIRCN"
     gene            complement(969..2012)
                     /locus_tag="VE223_08620"
     CDS             complement(969..2012)
                     /locus_tag="VE223_08620"
                     /inference="COORDINATES: protein motif:HMM:NF016030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HZC21690.1"
                     /translation="MLSTLSIKLGTGDIAKYPFLNEASDYIRETHFDFEEFNRPEMRH
                     IINRAAERMETELISGTIYQKLDKYEVEILTFLVTLMVAKYIGIGLILKKYSLFEAMR
                     AERFLSEDLKKEKNEQRKHLLLSKIFEELFKVTVDVDSTDNRLFKVRVTDYLMRASHF
                     HEQEWKLINRLVHMGYVYLDAEETVRLIRSELSTLIYNRVKSMTLSSFPETIKLKADE
                     LRVKLVPKYEHNMYRITGYYPPCIRHALKVMNQGENLPHSARLMLATYMLTIGKSIDD
                     IVILFHNAPDFNEKITRYQVEHLAGTKGSRTKYSVPSCEKLRNENLCFATEECSGIIN
                     PSQFGRNSKNYNG"
     gene            2088..2957
                     /locus_tag="VE223_08625"
     CDS             2088..2957
                     /locus_tag="VE223_08625"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016888 - endodeoxyribonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HZC21691.1"
                     /translation="MDLRIGFHVSIAGSISNSVANALKIGCSAFQIFSRNPKGWNAKP
                     IDNEDSKIFQMKLADSRIQRNSVIVHMPYLPNLSSPNGELYKKSISVLSEEVYRCSIL
                     GISYLVIHLGSHLGKGSENGISQLTKACNYAFDNYKSSYQKTSPVTVLLENSAGQKNS
                     IGSKFEEISLILDRLDSRKFGVCLDTCHAFASGYDLRTETGVDQMLEHFNKTIGLKEM
                     KIVHLNDSKGDLNSHSDRHEHIGLGNIGETGFGALFKHKNVTNLPIIMETPIDEKRGD
                     PENLKVVIDLIKQ"
     gene            3326..>3719
                     /locus_tag="VE223_08630"
     CDS             3326..>3719
                     /locus_tag="VE223_08630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE3 domain-containing protein"
                     /protein_id="HZC21692.1"
                     /translation="MTSEIHHFYIELIAVILAAVLAFYYLLRASTLYDKFSLFVGIGF
                     LTSALIDMLHVIVSYVAFDNPMFLKYFIPQTWFAGRIFLSAMLVMAIVKYPTLSSWSL
                     KENEERGKRKRYQQHRVEREQQQHQPIRL"
BASE COUNT         1165 a          692 c          611 g         1251 t
ORIGIN      
        1 tgttacatct tattttggtt agtccactct tgctatttat tgtacctgcc attctgaata
       61 ctctgtgaac atccattgtc acttgaggat caattctgac tcccatgtct ttagtcattt
      121 taagcaattc tgtcttaaat ctgctatatc ctcctttttg ttgaactata ttacgcaatt
      181 tagttgttga tgcttgatca attcctaatt tttgagctat ccgtcgacgc caaccataca
      241 taattccact ctttggaaat ttaactaaga aaccgtcgct agatacttct gcttttctta
      301 tgccaatact ttccgtcatc atatcattac caattagata gcttataata tctgatctgg
      361 cctgcgaatc caatcgatga aactctttat ctgaaatatg aatatggtac ccattattgc
      421 ctgaaaaata tatactaata gtcttttctt ttatacccag atctgagatt aataaatcaa
      481 ttagatgctt aacttctttt ttcaatccgt agttacactt gttgcatgga atcgatacat
      541 gatttagttt tcctgtttta caatatatgc atacatcagt cttgatttct tgtggctctc
      601 cgcaattcgc gcatagaata tatgagtgca ttagttcgca aggcaaatgc aaatcctttg
      661 catcaatatc gaaaataaga tctgcgccca tccactgctt ttcgtgcata tcataagttg
      721 gaaatctata gtatgcattt gaacagtaaa catctgaagg gacttcttta atcagtgttg
      781 ccagaagttc accaatattt ctaaatgaga ggtgtctaat catgcctgct tcaaatagca
      841 tgaatccaaa ttcacgttct tcaacgcgtt ctgggatttc aataatttta ctatgcttga
      901 agtaatattc tctgaatgca cttctgagta atactatatt tttctcatac gaatttttat
      961 taatactgct aaccattata attcttcgaa tttcttccaa attgacttgg gtttattata
     1021 ccactgcatt cttcagttgc aaagcaaaga ttttcgtttc gaagtttttc acaagaagga
     1081 acggaatatt ttgtgcggct gcctttagta cctgcaaggt gctccacctg atacctggta
     1141 atcttttcat taaaatcagg tgcattgtga aataggatta caatgtcgtc tatacttttc
     1201 ccaatcgtca acatgtaagt tgcaagcatt aatcttgccg aatgtggaag gttttctcct
     1261 tggttcatta cttttaatgc atgtctgatg catgggggat aataacctgt tattcgatac
     1321 atattatgct catacttggg cacaagtttg actctcaact catcagcttt tagcttaatt
     1381 gtttctggaa atgaagacaa tgtcatcgac ttcaccctat tataaattag agtactcagt
     1441 tcacttctaa tgagccttac agtttcttca gcatcaagat agacatatcc catatgtacc
     1501 aatctattta ttaatttcca ttcttgttca tggaagtggg aggctcgcat aaggtagtcc
     1561 gtaactctga ctttaaacaa tcgattatcg gtggaatcaa catcaacagt gactttgaat
     1621 aactcctcaa aaattttaga cagaagaaga tgtttccttt gttcattttt ttctttcttt
     1681 aaatcctcgc ttaaaaatct ctctgccctc atcgcttcaa acagggaata cttctttagg
     1741 atcagtccta ttccaatata ttttgcaacc ataagtgtaa caagaaaagt gagtatttca
     1801 acttcatatt tatccaattt ctgatagatt gttccgctga ttaattctgt ctccatcctc
     1861 tctgctgctc tattaatgat atgcctcatc tcaggtcgat taaattcttc aaagtcaaag
     1921 tgcgtttctc gaatataatc tgaggcttca tttaaaaaag gatatttagc aatatctcct
     1981 gttccgagct ttatagacaa tgtagacagc aatttataga tatactacaa taaaaagacc
     2041 aatgtaaaat tatataatct ttaaatggtt gatattttaa tcgaacaatg gatctccgaa
     2101 tagggtttca tgtatcaatt gctggttcaa tatcaaactc agttgctaat gctctaaaaa
     2161 ttggctgtag tgcttttcag atatttagca gaaatcctaa aggctggaat gccaaaccaa
     2221 ttgataatga agatagcaaa atttttcaga tgaaactggc tgacagccgg attcagcgaa
     2281 attcagtcat agtccatatg ccataccttc ccaacctatc atctcccaat ggagagctat
     2341 ataaaaaatc aattagtgtt ctctcagaag aagtgtatag atgttccata ctaggtattt
     2401 cttatcttgt aatccacctt ggaagccatc ttggaaaagg atctgaaaat ggaatcagtc
     2461 aattgacaaa ggcttgtaat tatgcttttg acaattacaa atcgtcctat caaaaaacaa
     2521 gtccagtcac cgtactcctt gaaaatagtg ccggtcagaa aaatagcata ggcagtaaat
     2581 ttgaagagat cagtttaata ttggatagat tggattctcg aaaatttggt gtatgtcttg
     2641 atacttgcca tgcttttgct tcaggttatg atttaaggac agagaccgga gttgaccaaa
     2701 tgctagaaca ttttaacaaa acaatagggt taaaggagat gaaaatcgta catctaaatg
     2761 actctaaggg cgatctaaat tctcattctg atcgtcatga gcatattgga cttggaaata
     2821 ttggggagac aggatttggt gcgttattta agcataaaaa tgtcactaat ttaccaatta
     2881 taatggaaac tccaattgat gaaaaaaggg gcgaccccga aaatcttaaa gttgttatcg
     2941 accttatcaa acagtgatgg tggcaacact ttaagaaaga tacaatcatc cacattacac
     3001 atccaaacga taaccttggt ttgtgtgaaa gagatattct tatagcaaac ctgcctgatc
     3061 tataacaatt gatacggtga atttatataa ataagatttt ggctagctct tcaattgata
     3121 acaagagtca agtaattcaa tcatgggcac aactactaaa gacgaggaat aattgcatat
     3181 gtagggggaa aggaagataa atccactact acataaatct aaatccttat tatcttcaaa
     3241 atatgaaatt ctaattaaat atacactcgt accatcaatc cccctttcaa ttatagcaat
     3301 tctatctgct aatcctcata cttgggtgac atctgaaatt catcatttct atatagagct
     3361 gattgcagtt atacttgccg ctgtactggc gttctattat cttttaaggg ctagtacatt
     3421 gtatgataaa ttcagccttt ttgttggaat aggatttctg acaagtgctt taattgatat
     3481 gctacatgtg atagtatcct atgttgcttt cgataatcct atgtttctca aatactttat
     3541 tcctcagaca tggtttgctg gaagaatatt cctaagcgcc atgctagtaa tggcaattgt
     3601 gaaataccct actttatcat cgtggtcgtt aaaagaaaat gaagagagag gaaaacgaaa
     3661 gcgttatcag cagcatagag tagaaagaga acaacagcaa catcagccaa ttagattgc
//
